Query 033088
Match_columns 127
No_of_seqs 133 out of 1149
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 15:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 6.6E-35 2.3E-39 189.1 11.4 120 6-126 11-132 (216)
2 1gwn_A RHO-related GTP-binding 100.0 5.1E-32 1.7E-36 174.3 14.5 125 1-125 21-145 (205)
3 3reg_A RHO-like small GTPase; 100.0 1.8E-31 6.1E-36 169.9 16.1 122 5-126 20-141 (194)
4 2j0v_A RAC-like GTP-binding pr 100.0 6.2E-32 2.1E-36 174.1 14.0 125 2-126 3-127 (212)
5 2atx_A Small GTP binding prote 100.0 1.9E-31 6.6E-36 169.6 15.7 123 4-126 14-136 (194)
6 3q3j_B RHO-related GTP-binding 100.0 9.1E-32 3.1E-36 174.0 14.3 121 5-125 24-144 (214)
7 1m7b_A RND3/RHOE small GTP-bin 100.0 1.7E-31 5.9E-36 168.8 14.7 122 4-125 3-124 (184)
8 3t5g_A GTP-binding protein RHE 100.0 5.9E-31 2E-35 165.6 16.7 123 3-126 1-125 (181)
9 3tw8_B RAS-related protein RAB 100.0 3.7E-31 1.3E-35 166.1 15.7 125 1-126 2-127 (181)
10 2fu5_C RAS-related protein RAB 100.0 1.6E-31 5.3E-36 168.5 12.8 125 1-126 1-127 (183)
11 2q3h_A RAS homolog gene family 100.0 6.1E-31 2.1E-35 168.1 14.8 122 4-125 16-137 (201)
12 3bwd_D RAC-like GTP-binding pr 100.0 5.2E-32 1.8E-36 170.3 9.3 125 2-126 2-126 (182)
13 1mh1_A RAC1; GTP-binding, GTPa 100.0 7.8E-31 2.7E-35 165.3 14.6 122 5-126 2-123 (186)
14 2bcg_Y Protein YP2, GTP-bindin 100.0 2.4E-30 8.1E-35 166.0 16.7 125 1-126 1-127 (206)
15 2gco_A H9, RHO-related GTP-bin 100.0 2E-30 6.8E-35 166.1 15.8 121 6-126 23-143 (201)
16 3c5c_A RAS-like protein 12; GD 100.0 1.3E-30 4.5E-35 165.3 14.3 119 5-125 18-140 (187)
17 3kkq_A RAS-related protein M-R 100.0 1.2E-30 4E-35 164.4 14.0 122 4-126 14-137 (183)
18 2j1l_A RHO-related GTP-binding 100.0 8.6E-31 2.9E-35 169.3 13.7 121 6-126 32-152 (214)
19 2iwr_A Centaurin gamma 1; ANK 100.0 1.4E-30 4.9E-35 163.4 12.9 116 2-124 1-120 (178)
20 3tkl_A RAS-related protein RAB 100.0 4.5E-30 1.5E-34 163.2 15.0 123 3-126 11-135 (196)
21 4gzl_A RAS-related C3 botulinu 100.0 1.7E-30 5.8E-35 166.8 13.1 122 5-126 27-148 (204)
22 2bme_A RAB4A, RAS-related prot 100.0 3.9E-30 1.3E-34 162.3 14.2 124 1-125 3-128 (186)
23 3oes_A GTPase rhebl1; small GT 100.0 3.1E-30 1E-34 165.1 13.8 122 3-125 19-142 (201)
24 2fv8_A H6, RHO-related GTP-bin 100.0 5.1E-30 1.7E-34 164.8 14.6 121 6-126 23-143 (207)
25 1ky3_A GTP-binding protein YPT 100.0 2.3E-30 8E-35 162.5 12.7 124 1-125 1-131 (182)
26 2fn4_A P23, RAS-related protei 100.0 3.3E-30 1.1E-34 161.7 13.1 125 1-126 2-128 (181)
27 1vg8_A RAS-related protein RAB 100.0 6.4E-30 2.2E-34 163.9 14.7 124 1-125 1-130 (207)
28 1c1y_A RAS-related protein RAP 100.0 2.5E-30 8.7E-35 160.4 12.0 119 7-126 2-122 (167)
29 1z2a_A RAS-related protein RAB 100.0 5.1E-30 1.7E-34 159.1 13.2 121 5-126 2-123 (168)
30 1z08_A RAS-related protein RAB 100.0 5.8E-30 2E-34 159.3 13.3 121 5-126 3-125 (170)
31 1zbd_A Rabphilin-3A; G protein 100.0 1.7E-29 5.9E-34 161.6 15.8 123 3-126 3-127 (203)
32 3ihw_A Centg3; RAS, centaurin, 100.0 1E-29 3.4E-34 161.0 14.5 115 4-125 16-132 (184)
33 2ew1_A RAS-related protein RAB 100.0 7.4E-30 2.5E-34 163.7 13.9 120 5-125 23-144 (201)
34 1x3s_A RAS-related protein RAB 100.0 1E-29 3.5E-34 161.3 14.5 123 2-125 9-134 (195)
35 2efe_B Small GTP-binding prote 100.0 2.4E-29 8.3E-34 158.0 15.9 121 5-126 9-131 (181)
36 1z0j_A RAB-22, RAS-related pro 100.0 1.6E-29 5.4E-34 157.2 14.8 121 5-126 3-125 (170)
37 2hup_A RAS-related protein RAB 100.0 3.8E-30 1.3E-34 164.9 12.2 121 5-126 26-148 (201)
38 2gf9_A RAS-related protein RAB 100.0 3.9E-29 1.3E-33 158.5 16.5 121 5-126 19-141 (189)
39 4dsu_A GTPase KRAS, isoform 2B 100.0 1.6E-29 5.4E-34 159.7 14.6 120 6-126 2-123 (189)
40 2g6b_A RAS-related protein RAB 100.0 4.1E-29 1.4E-33 156.8 16.3 122 4-126 6-130 (180)
41 1u8z_A RAS-related protein RAL 100.0 4.7E-30 1.6E-34 159.1 11.8 119 7-126 3-123 (168)
42 1ek0_A Protein (GTP-binding pr 100.0 1.3E-29 4.6E-34 157.4 13.9 118 7-125 2-121 (170)
43 2a5j_A RAS-related protein RAB 100.0 1.9E-29 6.6E-34 160.2 14.6 120 5-125 18-139 (191)
44 1z0f_A RAB14, member RAS oncog 100.0 1.1E-29 3.8E-34 159.1 13.2 121 4-125 11-133 (179)
45 2fg5_A RAB-22B, RAS-related pr 100.0 1.4E-29 4.8E-34 161.0 13.7 121 4-125 19-141 (192)
46 1r2q_A RAS-related protein RAB 100.0 1.9E-29 6.4E-34 156.7 13.9 120 5-125 3-124 (170)
47 2bov_A RAla, RAS-related prote 100.0 1.1E-29 3.7E-34 162.6 13.2 121 5-126 11-133 (206)
48 3con_A GTPase NRAS; structural 100.0 5E-29 1.7E-33 157.9 16.1 121 5-126 18-140 (190)
49 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.8E-29 9.7E-34 157.2 14.7 120 5-125 4-129 (177)
50 1kao_A RAP2A; GTP-binding prot 100.0 1.5E-29 5.2E-34 156.6 12.4 118 7-125 2-121 (167)
51 1g16_A RAS-related protein SEC 100.0 1.9E-29 6.4E-34 156.9 12.9 118 7-125 2-121 (170)
52 3bc1_A RAS-related protein RAB 100.0 3E-29 1E-33 158.9 14.0 122 4-126 7-141 (195)
53 1z06_A RAS-related protein RAB 100.0 2.9E-29 9.8E-34 159.1 13.8 120 5-125 17-140 (189)
54 2a9k_A RAS-related protein RAL 100.0 1.5E-29 5.2E-34 159.4 12.4 120 6-126 16-137 (187)
55 3q72_A GTP-binding protein RAD 100.0 3.9E-29 1.3E-33 155.1 13.9 117 8-126 2-120 (166)
56 3cpj_B GTP-binding protein YPT 100.0 3.7E-29 1.3E-33 162.5 14.3 120 5-125 10-131 (223)
57 2atv_A RERG, RAS-like estrogen 100.0 1.1E-29 3.6E-34 162.0 11.5 122 3-126 23-146 (196)
58 2nzj_A GTP-binding protein REM 100.0 5.3E-29 1.8E-33 155.6 14.0 120 6-126 2-125 (175)
59 2erx_A GTP-binding protein DI- 100.0 1.1E-29 3.8E-34 158.1 10.8 118 7-125 2-122 (172)
60 2oil_A CATX-8, RAS-related pro 100.0 5.3E-29 1.8E-33 158.2 13.8 122 4-126 21-144 (193)
61 2p5s_A RAS and EF-hand domain 100.0 1.2E-29 4.2E-34 162.1 10.9 120 5-125 25-146 (199)
62 3l0i_B RAS-related protein RAB 100.0 2.6E-30 8.8E-35 165.2 7.6 123 3-126 28-152 (199)
63 3gj0_A GTP-binding nuclear pro 100.0 1E-29 3.4E-34 164.8 10.3 122 4-126 11-133 (221)
64 2ce2_X GTPase HRAS; signaling 100.0 5.4E-29 1.8E-33 153.9 13.0 119 7-126 2-122 (166)
65 2o52_A RAS-related protein RAB 100.0 2.8E-29 9.4E-34 160.7 11.9 120 5-125 22-143 (200)
66 2y8e_A RAB-protein 6, GH09086P 100.0 3.9E-29 1.3E-33 156.6 12.3 119 6-125 12-132 (179)
67 2yc2_C IFT27, small RAB-relate 100.0 1.4E-29 4.7E-34 162.2 10.1 120 6-126 18-146 (208)
68 2il1_A RAB12; G-protein, GDP, 100.0 2.4E-29 8.1E-34 160.0 10.8 120 5-125 23-144 (192)
69 3clv_A RAB5 protein, putative; 100.0 1.1E-28 3.8E-33 157.2 13.8 120 3-124 2-159 (208)
70 3cbq_A GTP-binding protein REM 100.0 2.7E-29 9.4E-34 160.3 10.8 122 4-126 19-144 (195)
71 3dz8_A RAS-related protein RAB 100.0 2.9E-30 1E-34 164.0 6.1 121 4-125 19-141 (191)
72 2hxs_A RAB-26, RAS-related pro 100.0 1.4E-29 4.8E-34 158.7 8.8 120 5-125 3-128 (178)
73 4bas_A ADP-ribosylation factor 100.0 7.1E-29 2.4E-33 158.0 12.2 119 4-126 13-141 (199)
74 3cph_A RAS-related protein SEC 100.0 2.1E-28 7.3E-33 157.3 14.5 120 5-125 17-138 (213)
75 3q85_A GTP-binding protein REM 100.0 9.4E-29 3.2E-33 153.8 12.4 117 8-125 2-122 (169)
76 2gf0_A GTP-binding protein DI- 100.0 4.4E-29 1.5E-33 159.0 11.0 121 5-126 5-128 (199)
77 2g3y_A GTP-binding protein GEM 100.0 3.1E-28 1.1E-32 157.3 14.3 120 5-125 34-158 (211)
78 1zd9_A ADP-ribosylation factor 100.0 1.1E-28 3.6E-33 156.5 11.5 117 6-126 20-138 (188)
79 3t1o_A Gliding protein MGLA; G 100.0 4.7E-29 1.6E-33 158.4 9.9 121 4-126 10-149 (198)
80 2f7s_A C25KG, RAS-related prot 100.0 5.8E-29 2E-33 160.7 10.1 122 4-126 21-155 (217)
81 1f6b_A SAR1; gtpases, N-termin 100.0 4.7E-28 1.6E-32 154.8 12.9 116 6-126 23-140 (198)
82 1m2o_B GTP-binding protein SAR 100.0 1.6E-27 5.5E-32 151.5 15.1 116 6-126 21-138 (190)
83 1ksh_A ARF-like protein 2; sma 100.0 7.7E-28 2.6E-32 152.0 13.3 116 6-126 16-133 (186)
84 2wkq_A NPH1-1, RAS-related C3 100.0 7.3E-28 2.5E-32 163.9 14.0 120 6-125 153-272 (332)
85 2h17_A ADP-ribosylation factor 100.0 4.7E-28 1.6E-32 152.6 12.0 117 5-126 18-136 (181)
86 2h57_A ADP-ribosylation factor 100.0 8.8E-28 3E-32 152.3 13.2 117 6-126 19-140 (190)
87 1zj6_A ADP-ribosylation factor 100.0 4.9E-28 1.7E-32 153.2 11.6 116 6-126 14-131 (187)
88 3th5_A RAS-related C3 botulinu 99.9 1.8E-30 6.3E-35 166.4 0.0 121 6-126 28-148 (204)
89 1r8s_A ADP-ribosylation factor 100.0 4.1E-28 1.4E-32 150.2 10.4 113 9-126 1-115 (164)
90 4djt_A GTP-binding nuclear pro 100.0 3E-28 1E-32 157.4 9.8 121 5-126 8-131 (218)
91 1upt_A ARL1, ADP-ribosylation 100.0 2.4E-27 8.3E-32 147.5 13.2 116 6-126 5-122 (171)
92 2zej_A Dardarin, leucine-rich 100.0 1.6E-28 5.3E-33 155.3 7.4 118 8-126 2-126 (184)
93 2cjw_A GTP-binding protein GEM 99.9 6.8E-27 2.3E-31 148.9 14.1 119 6-125 4-127 (192)
94 1fzq_A ADP-ribosylation factor 99.9 1.5E-27 5.2E-32 150.5 10.6 116 6-126 14-131 (181)
95 3llu_A RAS-related GTP-binding 99.9 9.5E-28 3.3E-32 153.0 9.7 118 4-125 16-142 (196)
96 2b6h_A ADP-ribosylation factor 99.9 1.7E-27 5.7E-32 151.6 10.6 116 6-126 27-144 (192)
97 2x77_A ADP-ribosylation factor 99.9 3.8E-27 1.3E-31 149.2 11.3 116 6-126 20-137 (189)
98 1moz_A ARL1, ADP-ribosylation 99.9 2.1E-27 7.2E-32 149.4 10.0 116 6-126 16-133 (183)
99 2fh5_B SR-beta, signal recogni 99.9 5.8E-27 2E-31 151.0 10.6 120 5-126 4-129 (214)
100 2f9l_A RAB11B, member RAS onco 99.9 7.4E-26 2.5E-30 144.6 14.3 119 6-125 3-123 (199)
101 3r7w_B Gtpase2, GTP-binding pr 99.9 5.1E-27 1.7E-31 159.3 8.2 112 10-126 1-120 (331)
102 3r7w_A Gtpase1, GTP-binding pr 99.9 2E-26 6.9E-31 156.2 10.7 117 7-126 2-129 (307)
103 1oix_A RAS-related protein RAB 99.9 1.4E-25 4.6E-30 142.7 13.6 120 5-125 26-147 (191)
104 2lkc_A Translation initiation 99.9 6.8E-25 2.3E-29 137.3 13.6 116 5-126 5-121 (178)
105 3lvq_E ARF-GAP with SH3 domain 99.9 5.9E-25 2E-29 157.2 13.3 116 6-126 320-437 (497)
106 3o47_A ADP-ribosylation factor 99.9 5.2E-26 1.8E-30 155.5 6.9 116 7-126 164-280 (329)
107 3c5h_A Glucocorticoid receptor 99.9 7.5E-26 2.6E-30 149.8 7.3 121 5-126 16-212 (255)
108 2ged_A SR-beta, signal recogni 99.9 1.3E-25 4.4E-30 142.5 6.8 112 6-126 46-170 (193)
109 1nrj_B SR-beta, signal recogni 99.9 1.4E-25 4.9E-30 144.8 6.3 113 5-126 9-134 (218)
110 1wf3_A GTP-binding protein; GT 99.9 9.7E-24 3.3E-28 142.7 11.0 117 6-126 5-131 (301)
111 3dpu_A RAB family protein; roc 99.9 3.1E-24 1E-28 154.7 8.8 119 4-126 37-164 (535)
112 2dyk_A GTP-binding protein; GT 99.9 1.2E-23 4.2E-28 129.5 9.1 112 9-126 2-122 (161)
113 1svi_A GTP-binding protein YSX 99.9 2.9E-24 9.7E-29 136.4 6.4 116 4-126 19-148 (195)
114 2wji_A Ferrous iron transport 99.9 4E-23 1.4E-27 128.4 11.1 110 8-125 3-121 (165)
115 2gj8_A MNME, tRNA modification 99.9 1.3E-23 4.6E-28 131.5 8.6 115 7-125 3-128 (172)
116 2qu8_A Putative nucleolar GTP- 99.9 1.6E-23 5.4E-28 136.4 8.9 119 6-126 27-156 (228)
117 3iev_A GTP-binding protein ERA 99.9 6.6E-23 2.3E-27 139.0 9.2 119 3-125 5-135 (308)
118 2cxx_A Probable GTP-binding pr 99.9 7.1E-24 2.4E-28 133.8 3.4 113 9-126 2-136 (190)
119 2wjg_A FEOB, ferrous iron tran 99.9 1.4E-22 4.9E-27 127.8 8.2 113 5-125 4-125 (188)
120 3def_A T7I23.11 protein; chlor 99.9 4.2E-22 1.4E-26 132.3 8.5 117 6-125 34-164 (262)
121 3pqc_A Probable GTP-binding pr 99.9 3.4E-22 1.2E-26 126.5 7.4 114 5-126 20-147 (195)
122 3a1s_A Iron(II) transport prot 99.9 1.1E-21 3.8E-26 130.1 10.0 113 5-125 2-123 (258)
123 3gee_A MNME, tRNA modification 99.9 1.4E-21 4.6E-26 139.1 10.2 114 7-126 232-357 (476)
124 1h65_A Chloroplast outer envel 99.9 2.2E-21 7.5E-26 129.3 9.6 118 6-126 37-168 (270)
125 4dhe_A Probable GTP-binding pr 99.9 2.8E-22 9.5E-27 129.7 5.1 118 5-126 26-158 (223)
126 3iby_A Ferrous iron transport 99.9 5.3E-22 1.8E-26 131.5 6.5 109 9-125 2-123 (256)
127 3b1v_A Ferrous iron uptake tra 99.9 1.1E-21 3.6E-26 131.0 7.3 111 7-125 2-120 (272)
128 3i8s_A Ferrous iron transport 99.9 9.4E-22 3.2E-26 131.4 6.6 111 7-125 2-125 (274)
129 3lxw_A GTPase IMAP family memb 99.8 6E-21 2E-25 125.8 8.8 120 5-126 18-153 (247)
130 3lxx_A GTPase IMAP family memb 99.8 4.3E-21 1.5E-25 125.7 8.1 117 6-126 27-159 (239)
131 2hjg_A GTP-binding protein ENG 99.8 1.3E-21 4.4E-26 138.1 5.8 115 6-126 173-300 (436)
132 2xtp_A GTPase IMAP family memb 99.8 2.5E-20 8.4E-25 123.4 10.9 119 6-126 20-153 (260)
133 3qq5_A Small GTP-binding prote 99.8 3.9E-21 1.3E-25 134.9 7.2 115 5-126 31-154 (423)
134 1mky_A Probable GTP-binding pr 99.8 1.2E-20 4.1E-25 133.3 9.7 111 9-125 2-123 (439)
135 2hjg_A GTP-binding protein ENG 99.8 1.9E-21 6.4E-26 137.3 4.9 114 8-126 3-125 (436)
136 1ega_A Protein (GTP-binding pr 99.8 4E-20 1.4E-24 125.0 10.5 119 1-126 1-130 (301)
137 3k53_A Ferrous iron transport 99.8 1.5E-20 5.2E-25 125.3 8.2 112 7-125 2-122 (271)
138 2xtz_A Guanine nucleotide-bind 99.8 5.7E-21 1.9E-25 131.5 5.8 71 54-125 181-263 (354)
139 4fid_A G protein alpha subunit 99.8 1.9E-20 6.3E-25 128.0 8.2 70 55-125 160-241 (340)
140 3izy_P Translation initiation 99.8 7.3E-22 2.5E-26 141.8 0.4 116 6-126 2-118 (537)
141 4dcu_A GTP-binding protein ENG 99.8 2E-20 7E-25 132.6 6.9 115 6-126 193-320 (456)
142 3geh_A MNME, tRNA modification 99.8 5.3E-20 1.8E-24 130.5 8.7 112 7-126 223-344 (462)
143 1xzp_A Probable tRNA modificat 99.8 3.5E-20 1.2E-24 132.0 7.3 111 8-126 243-364 (482)
144 4dcu_A GTP-binding protein ENG 99.8 8.7E-21 3E-25 134.5 4.1 115 7-126 22-145 (456)
145 1cip_A Protein (guanine nucleo 99.8 3.5E-20 1.2E-24 127.5 6.8 70 55-125 192-273 (353)
146 1lnz_A SPO0B-associated GTP-bi 99.8 2.1E-20 7.1E-25 128.2 4.9 116 9-126 159-288 (342)
147 2ywe_A GTP-binding protein LEP 99.8 3.1E-19 1.1E-23 129.7 11.2 118 5-126 3-139 (600)
148 3ohm_A Guanine nucleotide-bind 99.8 2.8E-19 9.4E-24 121.8 10.2 70 55-125 166-247 (327)
149 3sjy_A Translation initiation 99.8 2E-19 6.9E-24 125.8 9.2 122 3-126 3-143 (403)
150 2e87_A Hypothetical protein PH 99.8 4.5E-19 1.5E-23 122.3 10.6 118 6-126 165-294 (357)
151 3t5d_A Septin-7; GTP-binding p 99.8 8.6E-20 3E-24 121.8 6.6 118 5-126 5-158 (274)
152 3cb4_D GTP-binding protein LEP 99.8 2.1E-19 7.3E-24 130.7 8.4 116 7-126 3-137 (599)
153 2h5e_A Peptide chain release f 99.8 3.7E-19 1.3E-23 128.0 9.1 117 6-126 11-148 (529)
154 3tr5_A RF-3, peptide chain rel 99.8 2E-20 6.7E-25 134.6 2.4 117 6-126 11-148 (528)
155 2qag_A Septin-2, protein NEDD5 99.8 8.2E-20 2.8E-24 126.2 4.5 117 7-126 36-188 (361)
156 3j2k_7 ERF3, eukaryotic polype 99.8 1.3E-18 4.6E-23 122.8 10.6 117 5-125 14-168 (439)
157 1zo1_I IF2, translation initia 99.8 9.1E-20 3.1E-24 130.1 4.3 115 6-126 2-117 (501)
158 1g7s_A Translation initiation 99.8 9.3E-19 3.2E-23 127.3 9.5 113 6-125 3-135 (594)
159 3p26_A Elongation factor 1 alp 99.8 3.4E-19 1.1E-23 127.2 7.0 120 6-126 31-185 (483)
160 1mky_A Probable GTP-binding pr 99.8 1.3E-18 4.4E-23 122.9 9.7 115 6-126 178-306 (439)
161 2qtf_A Protein HFLX, GTP-bindi 99.8 3.9E-18 1.3E-22 117.9 11.9 115 8-126 178-306 (364)
162 2c78_A Elongation factor TU-A; 99.8 4.6E-19 1.6E-23 124.1 6.8 117 5-125 8-141 (405)
163 1s0u_A EIF-2-gamma, translatio 99.8 9.9E-18 3.4E-22 117.4 13.4 117 4-126 4-149 (408)
164 1wb1_A Translation elongation 99.8 1.4E-18 4.6E-23 124.0 8.9 117 4-126 15-139 (482)
165 1jny_A EF-1-alpha, elongation 99.8 7.5E-20 2.6E-24 129.1 2.4 118 4-126 2-158 (435)
166 1zun_B Sulfate adenylate trans 99.8 2.5E-18 8.4E-23 121.3 9.8 117 6-126 22-171 (434)
167 1n0u_A EF-2, elongation factor 99.8 1.1E-18 3.8E-23 131.2 8.4 117 5-125 16-163 (842)
168 2aka_B Dynamin-1; fusion prote 99.8 1.8E-18 6.3E-23 116.3 8.7 118 6-126 24-206 (299)
169 1dar_A EF-G, elongation factor 99.8 8.1E-19 2.8E-23 129.7 7.4 116 4-126 8-143 (691)
170 1d2e_A Elongation factor TU (E 99.8 2.4E-18 8.2E-23 120.2 8.2 115 7-125 2-132 (397)
171 1kk1_A EIF2gamma; initiation o 99.7 1.1E-17 3.9E-22 117.2 10.4 117 4-126 6-151 (410)
172 2xex_A Elongation factor G; GT 99.7 4.3E-18 1.5E-22 125.9 8.1 116 5-126 7-141 (693)
173 1f60_A Elongation factor EEF1A 99.7 9.5E-18 3.2E-22 119.1 9.4 113 6-125 5-158 (458)
174 1jwy_B Dynamin A GTPase domain 99.7 2.5E-18 8.5E-23 116.5 6.0 118 6-126 22-212 (315)
175 1r5b_A Eukaryotic peptide chai 99.7 2.2E-18 7.6E-23 122.5 6.0 116 5-125 40-194 (467)
176 2qpt_A EH domain-containing pr 99.7 2.4E-18 8.1E-23 124.4 5.7 117 6-126 63-232 (550)
177 2rdo_7 EF-G, elongation factor 99.7 2.6E-17 8.8E-22 121.9 11.3 117 5-126 7-148 (704)
178 3izq_1 HBS1P, elongation facto 99.7 8.8E-18 3E-22 122.7 8.5 119 6-126 165-319 (611)
179 2j69_A Bacterial dynamin-like 99.7 3.3E-17 1.1E-21 121.2 10.5 116 7-125 68-243 (695)
180 3t34_A Dynamin-related protein 99.7 1E-17 3.5E-22 115.6 7.3 117 7-126 33-217 (360)
181 3avx_A Elongation factor TS, e 99.7 1.4E-17 4.7E-22 127.4 6.6 118 5-126 293-426 (1289)
182 1pui_A ENGB, probable GTP-bind 99.7 2.1E-17 7E-22 105.8 6.4 114 6-126 24-151 (210)
183 2dy1_A Elongation factor G; tr 99.7 3.9E-17 1.3E-21 120.3 8.0 117 5-125 6-139 (665)
184 1wxq_A GTP-binding protein; st 99.7 2.5E-16 8.6E-21 110.0 11.1 84 9-92 1-114 (397)
185 3mca_A HBS1, elongation factor 99.7 5.7E-18 2E-22 123.3 2.7 116 6-126 175-329 (592)
186 2elf_A Protein translation elo 99.7 3.8E-17 1.3E-21 113.2 5.8 101 10-124 23-125 (370)
187 1azs_C GS-alpha; complex (lyas 99.7 4.4E-16 1.5E-20 108.5 10.3 69 56-125 217-297 (402)
188 2qag_C Septin-7; cell cycle, c 99.6 8.9E-16 3.1E-20 107.7 9.9 117 7-126 30-181 (418)
189 1zcb_A G alpha I/13; GTP-bindi 99.6 2.3E-15 7.9E-20 103.9 9.8 70 55-125 200-281 (362)
190 2x2e_A Dynamin-1; nitration, h 99.6 6.1E-16 2.1E-20 106.6 6.5 117 7-126 30-211 (353)
191 1u0l_A Probable GTPase ENGC; p 99.6 6.3E-17 2.1E-21 109.4 1.5 96 23-126 32-129 (301)
192 3vqt_A RF-3, peptide chain rel 99.6 2.2E-15 7.5E-20 108.9 6.2 118 5-126 28-166 (548)
193 1jal_A YCHF protein; nucleotid 99.6 2.7E-14 9.3E-19 98.4 11.3 82 9-91 3-108 (363)
194 4fn5_A EF-G 1, elongation fact 99.5 2.6E-14 8.9E-19 106.1 9.0 117 6-126 11-151 (709)
195 2qnr_A Septin-2, protein NEDD5 99.5 1.3E-15 4.5E-20 102.9 1.7 117 6-126 16-169 (301)
196 1udx_A The GTP-binding protein 99.5 5.2E-14 1.8E-18 98.7 9.0 115 9-126 158-283 (416)
197 4a9a_A Ribosome-interacting GT 99.5 1.9E-13 6.6E-18 94.6 10.3 116 8-125 72-195 (376)
198 2ohf_A Protein OLA1, GTP-bindi 99.4 8.6E-14 2.9E-18 96.8 4.3 89 7-95 21-132 (396)
199 3j25_A Tetracycline resistance 99.4 4E-14 1.4E-18 104.0 0.5 115 8-126 2-133 (638)
200 3zvr_A Dynamin-1; hydrolase, D 99.4 3.6E-12 1.2E-16 94.9 10.1 116 7-126 50-231 (772)
201 2dby_A GTP-binding protein; GD 99.3 1.5E-11 5.1E-16 85.1 8.9 82 9-91 2-111 (368)
202 2wsm_A Hydrogenase expression/ 99.3 2.5E-12 8.6E-17 82.8 4.7 108 7-125 29-167 (221)
203 3p32_A Probable GTPase RV1496/ 99.3 3.4E-13 1.2E-17 93.0 0.1 59 56-125 172-230 (355)
204 2www_A Methylmalonic aciduria 99.3 2.6E-13 8.9E-18 93.4 -0.9 59 56-125 167-225 (349)
205 2hf9_A Probable hydrogenase ni 99.2 5.6E-14 1.9E-18 90.8 -5.3 38 7-44 37-74 (226)
206 1yrb_A ATP(GTP)binding protein 99.2 1.4E-11 4.7E-16 81.2 4.9 68 56-126 109-185 (262)
207 2p67_A LAO/AO transport system 99.2 1.2E-12 4E-17 89.8 -0.9 60 56-126 149-208 (341)
208 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 3.3E-10 1.1E-14 79.0 6.4 85 7-91 19-127 (392)
209 2qag_B Septin-6, protein NEDD5 99.0 3.6E-09 1.2E-13 74.4 10.6 115 7-126 41-190 (427)
210 3sop_A Neuronal-specific septi 99.0 1.6E-09 5.4E-14 72.2 8.2 114 8-126 2-154 (270)
211 3l82_B F-box only protein 4; T 99.0 1.8E-10 6.3E-15 73.7 1.8 62 63-125 109-176 (227)
212 2yv5_A YJEQ protein; hydrolase 98.9 1.4E-09 4.6E-14 73.5 5.7 58 66-126 66-124 (302)
213 3ec1_A YQEH GTPase; atnos1, at 98.9 1.6E-10 5.5E-15 80.0 0.1 110 8-125 162-287 (369)
214 2qm8_A GTPase/ATPase; G protei 98.9 1.9E-10 6.5E-15 78.8 0.4 59 56-125 148-206 (337)
215 3h2y_A GTPase family protein; 98.8 3.3E-10 1.1E-14 78.5 -0.2 111 8-125 160-286 (368)
216 1puj_A YLQF, conserved hypothe 98.8 7E-09 2.4E-13 69.4 5.5 58 6-67 118-176 (282)
217 3cnl_A YLQF, putative uncharac 98.8 4E-09 1.4E-13 69.9 3.7 56 9-68 100-156 (262)
218 2j37_W Signal recognition part 98.7 6.6E-09 2.3E-13 74.5 3.9 113 6-125 99-253 (504)
219 3l2o_B F-box only protein 4; s 98.7 4.6E-09 1.6E-13 70.3 2.2 64 63-126 194-262 (312)
220 1f5n_A Interferon-induced guan 98.5 1.3E-07 4.4E-12 69.0 5.8 65 5-69 35-104 (592)
221 1tq4_A IIGP1, interferon-induc 98.4 3.5E-07 1.2E-11 64.2 6.1 111 8-124 69-187 (413)
222 3szr_A Interferon-induced GTP- 98.4 3E-07 1E-11 67.5 4.7 23 10-32 47-69 (608)
223 1bif_A 6-phosphofructo-2-kinas 98.3 7.5E-09 2.6E-13 73.7 -4.5 99 6-109 37-148 (469)
224 2v3c_C SRP54, signal recogniti 98.3 5.4E-07 1.8E-11 63.7 4.7 63 56-125 181-251 (432)
225 3dm5_A SRP54, signal recogniti 98.2 1.3E-06 4.4E-11 61.8 4.0 64 56-125 183-252 (443)
226 3h2y_A GTPase family protein; 98.1 7E-07 2.4E-11 61.8 1.2 56 65-126 55-110 (368)
227 1knq_A Gluconate kinase; ALFA/ 98.0 6.2E-06 2.1E-10 50.9 3.8 30 1-30 1-30 (175)
228 1ye8_A Protein THEP1, hypothet 97.9 7.9E-06 2.7E-10 51.0 3.2 22 10-31 2-23 (178)
229 3ec1_A YQEH GTPase; atnos1, at 97.9 1.5E-06 5.3E-11 60.1 -0.3 56 65-126 57-112 (369)
230 3q5d_A Atlastin-1; G protein, 97.9 2.6E-05 8.8E-10 55.3 5.9 26 5-30 64-89 (447)
231 1kgd_A CASK, peripheral plasma 97.9 8.3E-06 2.9E-10 50.8 3.0 23 9-31 6-28 (180)
232 3kl4_A SRP54, signal recogniti 97.8 6.6E-06 2.3E-10 58.1 2.5 23 7-29 96-118 (433)
233 1lvg_A Guanylate kinase, GMP k 97.8 1.2E-05 4E-10 51.0 3.0 22 9-30 5-26 (198)
234 2yv5_A YJEQ protein; hydrolase 97.8 7.8E-05 2.7E-09 50.2 7.1 21 9-29 166-186 (302)
235 1y63_A LMAJ004144AAA protein; 97.8 1.6E-05 5.5E-10 49.6 3.4 30 2-31 4-33 (184)
236 3ney_A 55 kDa erythrocyte memb 97.8 1.8E-05 6.3E-10 50.2 3.4 25 7-31 18-42 (197)
237 3asz_A Uridine kinase; cytidin 97.8 1.6E-05 5.4E-10 50.5 3.0 26 5-30 3-28 (211)
238 3a00_A Guanylate kinase, GMP k 97.7 1.7E-05 5.9E-10 49.6 2.9 20 11-30 4-23 (186)
239 3tr0_A Guanylate kinase, GMP k 97.7 1.8E-05 6.1E-10 49.9 3.0 22 10-31 9-30 (205)
240 4gp7_A Metallophosphoesterase; 97.7 1.6E-05 5.6E-10 49.1 2.7 19 10-28 11-29 (171)
241 1znw_A Guanylate kinase, GMP k 97.7 2E-05 6.9E-10 50.1 3.0 22 10-31 22-43 (207)
242 1s96_A Guanylate kinase, GMP k 97.7 2.1E-05 7.1E-10 50.7 3.0 23 9-31 17-39 (219)
243 1zp6_A Hypothetical protein AT 97.7 2.1E-05 7.1E-10 49.1 2.8 24 8-31 9-32 (191)
244 2j41_A Guanylate kinase; GMP, 97.7 2.6E-05 9E-10 49.2 3.3 25 8-32 6-30 (207)
245 3c8u_A Fructokinase; YP_612366 97.7 2.8E-05 9.5E-10 49.5 3.3 25 6-30 20-44 (208)
246 1z6g_A Guanylate kinase; struc 97.7 2.4E-05 8.2E-10 50.3 3.0 23 9-31 24-46 (218)
247 1ex7_A Guanylate kinase; subst 97.7 2.7E-05 9.4E-10 49.0 3.1 21 11-31 4-24 (186)
248 2wwf_A Thymidilate kinase, put 97.7 3.1E-05 1.1E-09 49.1 3.4 30 1-30 3-32 (212)
249 3tau_A Guanylate kinase, GMP k 97.7 2.8E-05 9.4E-10 49.5 3.0 24 8-31 8-31 (208)
250 1qf9_A UMP/CMP kinase, protein 97.7 3.6E-05 1.2E-09 47.9 3.5 26 5-30 3-28 (194)
251 4eun_A Thermoresistant glucoki 97.7 3.1E-05 1.1E-09 48.9 3.2 24 7-30 28-51 (200)
252 2qor_A Guanylate kinase; phosp 97.6 3.5E-05 1.2E-09 48.8 3.0 24 8-31 12-35 (204)
253 1t9h_A YLOQ, probable GTPase E 97.6 2.1E-05 7.4E-10 53.2 2.1 24 9-32 174-197 (307)
254 1t9h_A YLOQ, probable GTPase E 97.6 0.00011 3.7E-09 49.7 5.5 52 73-126 80-131 (307)
255 1puj_A YLQF, conserved hypothe 97.6 1.4E-05 4.8E-10 53.4 1.1 59 61-126 4-64 (282)
256 3tif_A Uncharacterized ABC tra 97.6 3.5E-05 1.2E-09 50.1 3.0 22 10-31 33-54 (235)
257 1kag_A SKI, shikimate kinase I 97.6 4.2E-05 1.4E-09 47.0 3.0 22 9-30 5-26 (173)
258 1uf9_A TT1252 protein; P-loop, 97.6 4.4E-05 1.5E-09 48.0 3.2 31 1-31 1-31 (203)
259 3kb2_A SPBC2 prophage-derived 97.6 4.4E-05 1.5E-09 46.7 3.1 21 10-30 3-23 (173)
260 1cke_A CK, MSSA, protein (cyti 97.6 4.9E-05 1.7E-09 48.7 3.4 22 9-30 6-27 (227)
261 1ly1_A Polynucleotide kinase; 97.6 5.4E-05 1.9E-09 46.6 3.4 22 9-30 3-24 (181)
262 1via_A Shikimate kinase; struc 97.6 4.1E-05 1.4E-09 47.2 2.8 21 10-30 6-26 (175)
263 1htw_A HI0065; nucleotide-bind 97.6 4.9E-05 1.7E-09 46.6 3.0 24 9-32 34-57 (158)
264 2bbw_A Adenylate kinase 4, AK4 97.5 5.7E-05 1.9E-09 49.2 3.4 22 8-29 27-48 (246)
265 3vaa_A Shikimate kinase, SK; s 97.5 5.6E-05 1.9E-09 47.7 3.2 23 8-30 25-47 (199)
266 3lw7_A Adenylate kinase relate 97.5 5.3E-05 1.8E-09 46.2 3.0 20 9-28 2-21 (179)
267 2bdt_A BH3686; alpha-beta prot 97.5 5.1E-05 1.8E-09 47.3 3.0 21 10-30 4-24 (189)
268 1nn5_A Similar to deoxythymidy 97.5 4.9E-05 1.7E-09 48.2 2.9 24 7-30 8-31 (215)
269 3fb4_A Adenylate kinase; psych 97.5 5.7E-05 1.9E-09 48.1 3.1 21 10-30 2-22 (216)
270 2onk_A Molybdate/tungstate ABC 97.5 6E-05 2E-09 49.2 3.2 22 10-31 26-47 (240)
271 2pcj_A ABC transporter, lipopr 97.5 4.7E-05 1.6E-09 49.2 2.6 22 10-31 32-53 (224)
272 3dl0_A Adenylate kinase; phosp 97.5 6.3E-05 2.2E-09 47.9 3.1 21 10-30 2-22 (216)
273 1b0u_A Histidine permease; ABC 97.5 5.9E-05 2E-09 49.9 3.0 22 10-31 34-55 (262)
274 3gfo_A Cobalt import ATP-bindi 97.5 5.9E-05 2E-09 50.3 3.0 22 10-31 36-57 (275)
275 3t61_A Gluconokinase; PSI-biol 97.5 5.7E-05 1.9E-09 47.7 2.8 23 8-30 18-40 (202)
276 1sgw_A Putative ABC transporte 97.5 6.4E-05 2.2E-09 48.3 3.0 22 10-31 37-58 (214)
277 3tlx_A Adenylate kinase 2; str 97.5 8.4E-05 2.9E-09 48.5 3.6 24 7-30 28-51 (243)
278 2cbz_A Multidrug resistance-as 97.5 7E-05 2.4E-09 48.8 3.2 22 10-31 33-54 (237)
279 3sr0_A Adenylate kinase; phosp 97.5 7.1E-05 2.4E-09 47.8 3.1 21 10-30 2-22 (206)
280 1qhx_A CPT, protein (chloramph 97.5 7E-05 2.4E-09 46.1 3.0 22 9-30 4-25 (178)
281 1mv5_A LMRA, multidrug resista 97.5 7.5E-05 2.6E-09 48.8 3.2 22 10-31 30-51 (243)
282 4g1u_C Hemin import ATP-bindin 97.5 6.6E-05 2.3E-09 49.8 3.0 22 10-31 39-60 (266)
283 2ff7_A Alpha-hemolysin translo 97.5 7.4E-05 2.5E-09 49.0 3.2 22 10-31 37-58 (247)
284 2rcn_A Probable GTPase ENGC; Y 97.5 7.8E-05 2.7E-09 51.5 3.4 24 10-33 217-240 (358)
285 2cdn_A Adenylate kinase; phosp 97.5 9.3E-05 3.2E-09 46.6 3.5 25 6-30 18-42 (201)
286 1g6h_A High-affinity branched- 97.5 6.7E-05 2.3E-09 49.4 3.0 22 10-31 35-56 (257)
287 2i3b_A HCR-ntpase, human cance 97.5 6.7E-05 2.3E-09 47.3 2.8 21 10-30 3-23 (189)
288 2eyu_A Twitching motility prot 97.5 7.2E-05 2.5E-09 49.4 3.0 22 9-30 26-47 (261)
289 1nks_A Adenylate kinase; therm 97.5 7.8E-05 2.7E-09 46.3 3.1 22 9-30 2-23 (194)
290 3cm0_A Adenylate kinase; ATP-b 97.5 0.00011 3.9E-09 45.5 3.7 23 8-30 4-26 (186)
291 2olj_A Amino acid ABC transpor 97.5 7.4E-05 2.5E-09 49.5 3.0 22 10-31 52-73 (263)
292 2pze_A Cystic fibrosis transme 97.5 8.5E-05 2.9E-09 48.1 3.2 22 10-31 36-57 (229)
293 1aky_A Adenylate kinase; ATP:A 97.4 8.8E-05 3E-09 47.4 3.2 24 7-30 3-26 (220)
294 1ji0_A ABC transporter; ATP bi 97.4 7.7E-05 2.6E-09 48.7 3.0 22 10-31 34-55 (240)
295 3umf_A Adenylate kinase; rossm 97.4 0.00011 3.6E-09 47.4 3.5 24 7-30 27-51 (217)
296 2jaq_A Deoxyguanosine kinase; 97.4 9.3E-05 3.2E-09 46.4 3.2 21 10-30 2-22 (205)
297 3be4_A Adenylate kinase; malar 97.4 8.5E-05 2.9E-09 47.5 3.1 26 5-30 2-27 (217)
298 2ehv_A Hypothetical protein PH 97.4 8.5E-05 2.9E-09 48.1 3.1 20 10-29 32-51 (251)
299 1ukz_A Uridylate kinase; trans 97.4 0.00014 4.6E-09 45.9 4.0 25 6-30 13-37 (203)
300 2d2e_A SUFC protein; ABC-ATPas 97.4 8.5E-05 2.9E-09 48.7 3.1 22 10-31 31-52 (250)
301 2if2_A Dephospho-COA kinase; a 97.4 7.7E-05 2.6E-09 47.0 2.8 22 9-30 2-23 (204)
302 2rhm_A Putative kinase; P-loop 97.4 9.2E-05 3.2E-09 46.1 3.1 23 8-30 5-27 (193)
303 1vpl_A ABC transporter, ATP-bi 97.4 8.2E-05 2.8E-09 49.0 3.0 22 10-31 43-64 (256)
304 2qi9_C Vitamin B12 import ATP- 97.4 8.3E-05 2.9E-09 48.8 3.0 22 10-31 28-49 (249)
305 1kht_A Adenylate kinase; phosp 97.4 9.6E-05 3.3E-09 45.9 3.2 22 9-30 4-25 (192)
306 2zu0_C Probable ATP-dependent 97.4 9E-05 3.1E-09 49.1 3.2 22 10-31 48-69 (267)
307 3ec2_A DNA replication protein 97.4 7.7E-05 2.7E-09 46.2 2.7 24 8-31 38-61 (180)
308 2v9p_A Replication protein E1; 97.4 8.9E-05 3E-09 50.1 3.1 23 8-30 126-148 (305)
309 2ixe_A Antigen peptide transpo 97.4 8.3E-05 2.8E-09 49.4 3.0 22 10-31 47-68 (271)
310 3uie_A Adenylyl-sulfate kinase 97.4 0.00012 3.9E-09 46.3 3.5 24 7-30 24-47 (200)
311 2ihy_A ABC transporter, ATP-bi 97.4 9.6E-05 3.3E-09 49.3 3.2 22 10-31 49-70 (279)
312 2ghi_A Transport protein; mult 97.4 9.6E-05 3.3E-09 48.8 3.2 22 10-31 48-69 (260)
313 3trf_A Shikimate kinase, SK; a 97.4 0.0001 3.5E-09 45.7 3.2 23 8-30 5-27 (185)
314 3b85_A Phosphate starvation-in 97.4 6.9E-05 2.3E-09 47.9 2.4 22 10-31 24-45 (208)
315 1tev_A UMP-CMP kinase; ploop, 97.4 0.00012 4.1E-09 45.6 3.4 23 8-30 3-25 (196)
316 1jjv_A Dephospho-COA kinase; P 97.4 0.00012 4.3E-09 46.2 3.5 22 9-30 3-24 (206)
317 1lw7_A Transcriptional regulat 97.4 8.2E-05 2.8E-09 51.3 2.9 23 8-30 170-192 (365)
318 3lnc_A Guanylate kinase, GMP k 97.4 5.5E-05 1.9E-09 48.8 1.8 23 9-31 28-51 (231)
319 1zd8_A GTP:AMP phosphotransfer 97.4 9.5E-05 3.2E-09 47.5 2.9 24 7-30 6-29 (227)
320 1u0l_A Probable GTPase ENGC; p 97.4 0.00012 4.1E-09 49.3 3.5 24 10-33 171-194 (301)
321 1zak_A Adenylate kinase; ATP:A 97.4 7.4E-05 2.5E-09 47.8 2.4 24 7-30 4-27 (222)
322 1gvn_B Zeta; postsegregational 97.4 0.00013 4.6E-09 48.8 3.7 25 6-30 31-55 (287)
323 1np6_A Molybdopterin-guanine d 97.4 0.00011 3.6E-09 45.8 3.0 24 8-31 6-29 (174)
324 2qt1_A Nicotinamide riboside k 97.4 0.00014 4.9E-09 46.0 3.7 26 6-31 19-44 (207)
325 2plr_A DTMP kinase, probable t 97.4 0.00013 4.4E-09 46.0 3.5 23 8-30 4-26 (213)
326 2nq2_C Hypothetical ABC transp 97.4 9.8E-05 3.4E-09 48.6 2.9 22 10-31 33-54 (253)
327 3iij_A Coilin-interacting nucl 97.4 0.00012 4.3E-09 45.2 3.3 24 7-30 10-33 (180)
328 3aez_A Pantothenate kinase; tr 97.4 0.00015 5.1E-09 49.2 3.8 26 5-30 87-112 (312)
329 1sxj_E Activator 1 40 kDa subu 97.4 0.00017 6E-09 49.1 4.2 20 11-30 39-58 (354)
330 2yz2_A Putative ABC transporte 97.4 0.0001 3.5E-09 48.8 3.0 22 10-31 35-56 (266)
331 2v54_A DTMP kinase, thymidylat 97.4 0.00015 5.1E-09 45.6 3.6 24 8-31 4-27 (204)
332 1e4v_A Adenylate kinase; trans 97.4 9.9E-05 3.4E-09 47.0 2.8 21 10-30 2-22 (214)
333 1zcb_A G alpha I/13; GTP-bindi 97.4 0.00014 4.7E-09 50.3 3.5 23 6-28 31-53 (362)
334 4a74_A DNA repair and recombin 97.4 9.7E-05 3.3E-09 47.2 2.6 22 10-31 27-48 (231)
335 2pjz_A Hypothetical protein ST 97.4 0.00013 4.5E-09 48.3 3.2 23 10-32 32-54 (263)
336 1odf_A YGR205W, hypothetical 3 97.3 0.00017 5.9E-09 48.4 3.8 25 5-29 28-52 (290)
337 2jeo_A Uridine-cytidine kinase 97.3 0.00016 5.6E-09 47.0 3.5 24 7-30 24-47 (245)
338 3fvq_A Fe(3+) IONS import ATP- 97.3 0.00011 3.9E-09 50.7 2.7 23 10-32 32-54 (359)
339 1uj2_A Uridine-cytidine kinase 97.3 0.00017 5.8E-09 47.2 3.4 26 5-30 19-44 (252)
340 3nh6_A ATP-binding cassette SU 97.3 9.2E-05 3.1E-09 50.1 2.1 23 9-31 81-103 (306)
341 1rz3_A Hypothetical protein rb 97.3 0.0002 7E-09 45.2 3.6 25 6-30 20-44 (201)
342 1z47_A CYSA, putative ABC-tran 97.3 0.00014 5E-09 50.1 3.1 22 10-31 43-64 (355)
343 2f1r_A Molybdopterin-guanine d 97.3 6E-05 2.1E-09 46.8 1.1 21 10-30 4-24 (171)
344 2c95_A Adenylate kinase 1; tra 97.3 0.00015 5E-09 45.3 2.9 23 8-30 9-31 (196)
345 1ak2_A Adenylate kinase isoenz 97.3 0.00018 6.1E-09 46.5 3.3 24 7-30 15-38 (233)
346 3tqc_A Pantothenate kinase; bi 97.3 0.00021 7.3E-09 48.6 3.8 24 6-29 90-113 (321)
347 1jbk_A CLPB protein; beta barr 97.3 0.00018 6.2E-09 44.2 3.2 24 8-31 43-66 (195)
348 2pt5_A Shikimate kinase, SK; a 97.3 0.00018 6.2E-09 43.8 3.2 21 10-30 2-22 (168)
349 2ze6_A Isopentenyl transferase 97.3 0.00015 5.2E-09 47.5 3.0 21 10-30 3-23 (253)
350 3rlf_A Maltose/maltodextrin im 97.3 0.00016 5.4E-09 50.3 3.2 23 10-32 31-53 (381)
351 2yyz_A Sugar ABC transporter, 97.3 0.00016 5.3E-09 50.0 3.1 22 10-31 31-52 (359)
352 2it1_A 362AA long hypothetical 97.3 0.00016 5.4E-09 50.0 3.2 22 10-31 31-52 (362)
353 2xb4_A Adenylate kinase; ATP-b 97.3 0.00018 6.3E-09 46.2 3.2 21 10-30 2-22 (223)
354 1g29_1 MALK, maltose transport 97.3 0.00017 5.8E-09 50.0 3.1 22 10-31 31-52 (372)
355 1v43_A Sugar-binding transport 97.3 0.00018 6E-09 50.0 3.2 22 10-31 39-60 (372)
356 2bbs_A Cystic fibrosis transme 97.3 0.00016 5.4E-09 48.5 2.8 22 10-31 66-87 (290)
357 2x8a_A Nuclear valosin-contain 97.3 0.00017 5.9E-09 47.9 3.0 22 10-31 46-67 (274)
358 1ixz_A ATP-dependent metallopr 97.3 0.00018 6.1E-09 46.9 3.0 22 10-31 51-72 (254)
359 3tui_C Methionine import ATP-b 97.2 0.00019 6.4E-09 49.7 3.2 22 10-31 56-77 (366)
360 2kjq_A DNAA-related protein; s 97.2 0.00013 4.4E-09 44.2 2.1 22 10-31 38-59 (149)
361 3jvv_A Twitching mobility prot 97.2 0.00017 5.9E-09 49.7 3.0 21 10-30 125-145 (356)
362 2p5t_B PEZT; postsegregational 97.2 0.00016 5.4E-09 47.4 2.6 25 6-30 30-54 (253)
363 2z0h_A DTMP kinase, thymidylat 97.2 0.0002 6.9E-09 44.7 3.0 22 10-31 2-23 (197)
364 2bwj_A Adenylate kinase 5; pho 97.2 0.00018 6.1E-09 45.0 2.7 23 8-30 12-34 (199)
365 1rj9_A FTSY, signal recognitio 97.2 0.00019 6.5E-09 48.5 3.0 23 7-29 101-123 (304)
366 2yvu_A Probable adenylyl-sulfa 97.2 0.00029 1E-08 43.7 3.7 24 7-30 12-35 (186)
367 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00026 9E-09 46.5 3.6 23 8-30 4-26 (260)
368 4e22_A Cytidylate kinase; P-lo 97.2 0.00024 8.3E-09 46.5 3.4 22 8-29 27-48 (252)
369 2vli_A Antibiotic resistance p 97.2 0.00015 5E-09 44.8 2.2 24 7-30 4-27 (183)
370 1vht_A Dephospho-COA kinase; s 97.2 0.00029 9.9E-09 44.9 3.6 23 8-30 4-26 (218)
371 1xjc_A MOBB protein homolog; s 97.2 0.00028 9.6E-09 43.7 3.3 23 8-30 4-26 (169)
372 2pbr_A DTMP kinase, thymidylat 97.2 0.00025 8.6E-09 44.1 3.1 21 10-30 2-22 (195)
373 3d31_A Sulfate/molybdate ABC t 97.2 0.00014 4.9E-09 50.0 2.1 22 10-31 28-49 (348)
374 1e6c_A Shikimate kinase; phosp 97.2 0.00025 8.6E-09 43.4 3.0 22 9-30 3-24 (173)
375 1sq5_A Pantothenate kinase; P- 97.2 0.00027 9.3E-09 47.7 3.4 25 6-30 78-102 (308)
376 1gtv_A TMK, thymidylate kinase 97.2 7.5E-05 2.6E-09 47.3 0.5 21 10-30 2-22 (214)
377 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00028 9.5E-09 45.0 3.1 21 10-30 25-45 (235)
378 3gd7_A Fusion complex of cysti 97.2 0.00022 7.5E-09 49.8 2.7 21 10-30 49-69 (390)
379 2ewv_A Twitching motility prot 97.1 0.00027 9.2E-09 49.0 3.1 22 9-30 137-158 (372)
380 2vp4_A Deoxynucleoside kinase; 97.1 0.0002 6.7E-09 46.3 2.3 25 7-31 19-43 (230)
381 1in4_A RUVB, holliday junction 97.1 0.00026 8.7E-09 48.3 3.0 23 9-31 52-74 (334)
382 2gza_A Type IV secretion syste 97.1 0.00022 7.5E-09 49.2 2.7 23 9-31 176-198 (361)
383 2iyv_A Shikimate kinase, SK; t 97.1 0.00029 9.8E-09 43.6 3.0 21 10-30 4-24 (184)
384 2pez_A Bifunctional 3'-phospho 97.1 0.00038 1.3E-08 43.0 3.5 24 7-30 4-27 (179)
385 3kta_A Chromosome segregation 97.1 0.00027 9.2E-09 43.7 2.8 21 10-30 28-48 (182)
386 1iy2_A ATP-dependent metallopr 97.1 0.00028 9.7E-09 46.7 3.0 22 10-31 75-96 (278)
387 3r20_A Cytidylate kinase; stru 97.1 0.00034 1.2E-08 45.5 3.3 23 7-29 8-30 (233)
388 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00024 8.2E-09 48.5 2.6 24 9-32 172-195 (330)
389 2p65_A Hypothetical protein PF 97.1 0.00023 7.9E-09 43.7 2.4 24 8-31 43-66 (187)
390 3e70_C DPA, signal recognition 97.1 0.00042 1.4E-08 47.3 3.8 25 6-30 127-151 (328)
391 3bos_A Putative DNA replicatio 97.1 0.00036 1.2E-08 44.7 3.2 23 8-30 52-74 (242)
392 1oxx_K GLCV, glucose, ABC tran 97.1 0.00015 5E-09 50.0 1.4 22 10-31 33-54 (353)
393 2f6r_A COA synthase, bifunctio 97.1 0.00043 1.5E-08 46.1 3.6 25 6-30 73-97 (281)
394 3b9q_A Chloroplast SRP recepto 97.1 0.00058 2E-08 46.1 4.2 24 7-30 99-122 (302)
395 1p9r_A General secretion pathw 97.1 0.00031 1.1E-08 49.4 3.0 22 10-31 169-190 (418)
396 1zuh_A Shikimate kinase; alpha 97.1 0.00043 1.5E-08 42.2 3.3 23 8-30 7-29 (168)
397 1lv7_A FTSH; alpha/beta domain 97.1 0.00037 1.3E-08 45.5 3.0 24 8-31 45-68 (257)
398 4eaq_A DTMP kinase, thymidylat 97.0 0.0006 2.1E-08 44.1 3.8 24 7-30 25-48 (229)
399 2cvh_A DNA repair and recombin 97.0 0.00045 1.5E-08 43.8 3.1 21 10-30 22-42 (220)
400 3nwj_A ATSK2; P loop, shikimat 97.0 0.00038 1.3E-08 45.7 2.8 23 8-30 48-70 (250)
401 3co5_A Putative two-component 97.0 0.00042 1.4E-08 41.4 2.8 24 8-31 27-50 (143)
402 2w58_A DNAI, primosome compone 97.0 0.0005 1.7E-08 43.2 3.2 23 9-31 55-77 (202)
403 3d3q_A TRNA delta(2)-isopenten 97.0 0.00058 2E-08 46.8 3.6 22 9-30 8-29 (340)
404 1m7g_A Adenylylsulfate kinase; 97.0 0.00059 2E-08 43.3 3.5 24 7-30 24-47 (211)
405 1njg_A DNA polymerase III subu 97.0 0.00046 1.6E-08 43.9 3.0 21 10-30 47-67 (250)
406 1ltq_A Polynucleotide kinase; 97.0 0.00056 1.9E-08 45.7 3.4 22 9-30 3-24 (301)
407 1n0w_A DNA repair protein RAD5 97.0 0.0005 1.7E-08 44.2 3.1 22 10-31 26-47 (243)
408 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00056 1.9E-08 41.3 3.1 19 11-29 26-44 (149)
409 3cnl_A YLQF, putative uncharac 97.0 5.2E-05 1.8E-09 50.1 -1.6 55 63-126 4-60 (262)
410 1cr0_A DNA primase/helicase; R 97.0 0.00039 1.3E-08 46.4 2.6 21 10-30 37-57 (296)
411 2chg_A Replication factor C sm 97.0 0.0005 1.7E-08 43.2 3.0 21 10-30 40-60 (226)
412 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00038 1.3E-08 49.6 2.6 23 9-31 139-161 (460)
413 2yhs_A FTSY, cell division pro 97.0 0.00049 1.7E-08 49.5 3.0 24 7-30 292-315 (503)
414 2oap_1 GSPE-2, type II secreti 96.9 0.00052 1.8E-08 49.5 3.1 24 9-32 261-284 (511)
415 3gmt_A Adenylate kinase; ssgci 96.9 0.00066 2.3E-08 44.1 3.2 30 1-30 1-30 (230)
416 1nij_A Hypothetical protein YJ 96.9 0.00036 1.2E-08 47.3 2.0 25 8-32 4-28 (318)
417 3crm_A TRNA delta(2)-isopenten 96.9 0.00075 2.6E-08 45.9 3.6 22 9-30 6-27 (323)
418 3t15_A Ribulose bisphosphate c 96.9 0.00064 2.2E-08 45.5 3.2 25 7-31 35-59 (293)
419 2og2_A Putative signal recogni 96.9 0.00098 3.4E-08 46.0 4.1 24 7-30 156-179 (359)
420 3b9p_A CG5977-PA, isoform A; A 96.9 0.00058 2E-08 45.4 2.9 24 8-31 54-77 (297)
421 1d2n_A N-ethylmaleimide-sensit 96.9 0.001 3.5E-08 43.8 4.1 27 5-31 61-87 (272)
422 2obl_A ESCN; ATPase, hydrolase 96.9 0.00057 2E-08 47.0 2.9 24 9-32 72-95 (347)
423 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.00075 2.6E-08 43.9 3.3 24 7-30 38-61 (262)
424 3n70_A Transport activator; si 96.9 0.00071 2.4E-08 40.5 3.0 26 7-32 23-48 (145)
425 3h4m_A Proteasome-activating n 96.9 0.0007 2.4E-08 44.7 3.2 25 7-31 50-74 (285)
426 1azs_C GS-alpha; complex (lyas 96.9 0.00079 2.7E-08 47.2 3.5 23 6-28 38-60 (402)
427 2qmh_A HPR kinase/phosphorylas 96.9 0.00072 2.5E-08 43.0 3.0 25 8-32 34-58 (205)
428 1q3t_A Cytidylate kinase; nucl 96.9 0.00077 2.6E-08 43.5 3.3 25 6-30 14-38 (236)
429 3foz_A TRNA delta(2)-isopenten 96.9 0.00095 3.2E-08 45.2 3.7 24 8-31 10-33 (316)
430 1yqt_A RNAse L inhibitor; ATP- 96.9 0.00075 2.6E-08 49.0 3.4 23 10-32 49-71 (538)
431 3b60_A Lipid A export ATP-bind 96.9 0.00059 2E-08 49.9 2.9 23 9-31 370-392 (582)
432 3b5x_A Lipid A export ATP-bind 96.9 0.0007 2.4E-08 49.5 3.3 23 9-31 370-392 (582)
433 2dpy_A FLII, flagellum-specifi 96.8 0.00064 2.2E-08 48.1 2.9 23 10-32 159-181 (438)
434 3syl_A Protein CBBX; photosynt 96.8 0.00084 2.9E-08 44.8 3.3 24 7-30 66-89 (309)
435 3euj_A Chromosome partition pr 96.8 0.00072 2.5E-08 48.5 3.0 21 10-30 31-51 (483)
436 3qf7_A RAD50; ABC-ATPase, ATPa 96.8 0.00078 2.7E-08 46.5 3.1 19 11-29 26-44 (365)
437 1l8q_A Chromosomal replication 96.8 0.00072 2.5E-08 45.6 2.9 22 9-30 38-59 (324)
438 3cf0_A Transitional endoplasmi 96.8 0.00077 2.6E-08 45.2 2.9 24 8-31 49-72 (301)
439 4fcw_A Chaperone protein CLPB; 96.8 0.0014 4.7E-08 43.8 4.1 23 9-31 48-70 (311)
440 2grj_A Dephospho-COA kinase; T 96.8 0.0012 4E-08 41.6 3.6 25 7-31 11-35 (192)
441 1nlf_A Regulatory protein REPA 96.8 0.00073 2.5E-08 44.8 2.7 21 10-30 32-52 (279)
442 3u61_B DNA polymerase accessor 96.8 0.0021 7.1E-08 43.3 5.0 21 11-31 51-71 (324)
443 1svm_A Large T antigen; AAA+ f 96.8 0.0008 2.7E-08 46.8 3.0 24 7-30 168-191 (377)
444 1p5z_B DCK, deoxycytidine kina 96.8 0.0006 2E-08 44.8 2.2 25 7-31 23-47 (263)
445 4ido_A Atlastin-1; GTPase, GTP 96.8 0.0051 1.8E-07 43.7 7.1 25 5-29 64-88 (457)
446 3ozx_A RNAse L inhibitor; ATP 96.8 0.00079 2.7E-08 48.9 3.0 22 10-31 27-48 (538)
447 2qby_A CDC6 homolog 1, cell di 96.8 0.00071 2.4E-08 46.2 2.6 23 8-30 45-67 (386)
448 2yl4_A ATP-binding cassette SU 96.8 0.00062 2.1E-08 49.9 2.5 22 10-31 372-393 (595)
449 3zvl_A Bifunctional polynucleo 96.8 0.0013 4.3E-08 46.3 3.9 25 7-31 257-281 (416)
450 2dr3_A UPF0273 protein PH0284; 96.7 0.00086 2.9E-08 43.2 2.8 21 10-30 25-45 (247)
451 3qf4_B Uncharacterized ABC tra 96.7 0.00071 2.4E-08 49.7 2.6 23 9-31 382-404 (598)
452 1a7j_A Phosphoribulokinase; tr 96.7 0.00048 1.6E-08 46.1 1.6 24 7-30 4-27 (290)
453 1tue_A Replication protein E1; 96.7 0.00076 2.6E-08 43.1 2.4 22 9-30 59-80 (212)
454 3j16_B RLI1P; ribosome recycli 96.7 0.00095 3.2E-08 49.2 3.2 22 10-31 105-126 (608)
455 3ake_A Cytidylate kinase; CMP 96.7 0.0011 3.9E-08 41.5 3.2 21 10-30 4-24 (208)
456 3a8t_A Adenylate isopentenyltr 96.7 0.0011 3.8E-08 45.4 3.2 23 9-31 41-63 (339)
457 1ofh_A ATP-dependent HSL prote 96.7 0.001 3.5E-08 44.3 3.0 23 8-30 50-72 (310)
458 1c9k_A COBU, adenosylcobinamid 96.7 0.0011 3.7E-08 41.5 2.9 21 11-31 2-22 (180)
459 1fnn_A CDC6P, cell division co 96.7 0.001 3.4E-08 45.7 3.0 22 10-31 46-67 (389)
460 3exa_A TRNA delta(2)-isopenten 96.7 0.0011 3.9E-08 45.0 3.1 23 9-31 4-26 (322)
461 4b4t_M 26S protease regulatory 96.7 0.0012 4E-08 46.8 3.3 25 7-31 214-238 (434)
462 4a82_A Cystic fibrosis transme 96.7 0.00062 2.1E-08 49.8 1.8 23 9-31 368-390 (578)
463 2qen_A Walker-type ATPase; unk 96.7 0.0011 3.9E-08 44.6 3.0 23 9-31 32-54 (350)
464 4b4t_K 26S protease regulatory 96.6 0.0014 4.7E-08 46.4 3.3 24 7-30 205-228 (428)
465 1sxj_C Activator 1 40 kDa subu 96.6 0.0011 3.9E-08 45.0 2.9 21 11-31 49-69 (340)
466 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0012 4E-08 44.8 2.9 24 8-31 45-68 (322)
467 3eie_A Vacuolar protein sortin 96.6 0.0018 6.1E-08 43.8 3.8 24 8-31 51-74 (322)
468 3qf4_A ABC transporter, ATP-bi 96.6 0.00083 2.8E-08 49.2 2.3 23 9-31 370-392 (587)
469 3bk7_A ABC transporter ATP-bin 96.6 0.0013 4.3E-08 48.5 3.2 22 10-31 119-140 (607)
470 3ozx_A RNAse L inhibitor; ATP 96.6 0.0012 4E-08 48.0 3.0 22 10-31 296-317 (538)
471 4b4t_L 26S protease subunit RP 96.6 0.0015 5.1E-08 46.3 3.3 25 7-31 214-238 (437)
472 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0015 5.1E-08 47.5 3.4 23 10-32 314-336 (538)
473 3qks_A DNA double-strand break 96.6 0.0016 5.3E-08 41.3 3.1 20 10-29 25-44 (203)
474 2v1u_A Cell division control p 96.6 0.0011 3.7E-08 45.4 2.5 24 7-30 43-66 (387)
475 2ga8_A Hypothetical 39.9 kDa p 96.6 0.002 6.9E-08 44.4 3.8 23 7-29 23-45 (359)
476 2fna_A Conserved hypothetical 96.6 0.0012 3.9E-08 44.7 2.6 22 10-31 32-53 (357)
477 3bk7_A ABC transporter ATP-bin 96.6 0.0015 5E-08 48.2 3.2 22 10-31 384-405 (607)
478 1pzn_A RAD51, DNA repair and r 96.6 0.0013 4.4E-08 45.2 2.7 23 9-31 132-154 (349)
479 1sxj_D Activator 1 41 kDa subu 96.6 0.0015 5E-08 44.3 3.0 22 10-31 60-81 (353)
480 2ocp_A DGK, deoxyguanosine kin 96.5 0.0017 5.8E-08 42.0 3.1 23 8-30 2-24 (241)
481 2px0_A Flagellar biosynthesis 96.5 0.0014 4.7E-08 44.1 2.7 22 8-29 105-126 (296)
482 1vma_A Cell division protein F 96.5 0.0029 9.8E-08 42.8 4.2 23 7-29 103-125 (306)
483 3pxg_A Negative regulator of g 96.5 0.0015 5.1E-08 46.6 3.0 23 8-30 201-223 (468)
484 2h92_A Cytidylate kinase; ross 96.5 0.0016 5.4E-08 41.4 2.8 23 8-30 3-25 (219)
485 2qgz_A Helicase loader, putati 96.5 0.0019 6.4E-08 43.6 3.2 23 8-30 152-174 (308)
486 2r62_A Cell division protease 96.5 0.00064 2.2E-08 44.6 0.9 22 9-30 45-66 (268)
487 3uk6_A RUVB-like 2; hexameric 96.5 0.0014 4.8E-08 44.8 2.6 23 9-31 71-93 (368)
488 3tqf_A HPR(Ser) kinase; transf 96.5 0.002 6.7E-08 40.1 2.9 23 9-31 17-39 (181)
489 3ld9_A DTMP kinase, thymidylat 96.5 0.0024 8.3E-08 41.2 3.5 26 5-30 18-43 (223)
490 3pfi_A Holliday junction ATP-d 96.5 0.0017 6E-08 43.9 3.0 24 8-31 55-78 (338)
491 3j16_B RLI1P; ribosome recycli 96.5 0.0018 6.2E-08 47.7 3.2 22 11-32 381-402 (608)
492 4b4t_J 26S protease regulatory 96.5 0.0017 5.9E-08 45.5 2.8 25 7-31 181-205 (405)
493 1tf7_A KAIC; homohexamer, hexa 96.5 0.0015 5.3E-08 47.1 2.7 19 10-28 41-59 (525)
494 2z4s_A Chromosomal replication 96.5 0.0017 6E-08 45.9 2.9 23 8-30 130-152 (440)
495 2qp9_X Vacuolar protein sortin 96.5 0.0018 6.3E-08 44.5 3.0 24 8-31 84-107 (355)
496 3lda_A DNA repair protein RAD5 96.4 0.0016 5.6E-08 45.6 2.7 20 10-29 180-199 (400)
497 2qby_B CDC6 homolog 3, cell di 96.4 0.0016 5.5E-08 44.6 2.6 23 8-30 45-67 (384)
498 4edh_A DTMP kinase, thymidylat 96.4 0.0021 7.3E-08 41.1 3.0 23 8-30 6-28 (213)
499 2bjv_A PSP operon transcriptio 96.4 0.0021 7.2E-08 42.1 3.0 25 8-32 29-53 (265)
500 1um8_A ATP-dependent CLP prote 96.4 0.002 6.9E-08 44.4 3.0 24 8-31 72-95 (376)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=6.6e-35 Score=189.15 Aligned_cols=120 Identities=30% Similarity=0.520 Sum_probs=99.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
.+.+||+++|++|||||||+++|..+.|...+.+|.+.++ ......++..+.+++|||+|+++|+.++..|++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 4679999999999999999999999999999999998766 456777888999999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
+|||++++++|.++ ..|+..+.+. .+++|++|||||+|+.+
T Consensus 91 lv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 91 VVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred EEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 99999999999998 8899888765 47899999999999864
No 2
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-32 Score=174.27 Aligned_cols=125 Identities=36% Similarity=0.714 Sum_probs=109.9
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (127)
|+......+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+.+||++|++.|...+..+++.+
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 44556678999999999999999999999999988888888877766677788889999999999999999999999999
Q ss_pred cEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 81 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|++++|||++++.++..+...|+..+.+..++.|+++|+||+|+.
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 999999999999999997678999998887899999999999985
No 3
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.8e-31 Score=169.86 Aligned_cols=122 Identities=48% Similarity=0.881 Sum_probs=112.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
..+.+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 45679999999999999999999999999888889998888878888888999999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|||+++++++..+...|+..+.+..++.|+++|+||+|+..
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 999999999999976899999998888999999999999863
No 4
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=6.2e-32 Score=174.08 Aligned_cols=125 Identities=81% Similarity=1.351 Sum_probs=111.7
Q ss_pred CCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 2 ~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
.|+..+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+..++..+.+.+||+||++.+..++..+++.+|
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 82 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence 46667899999999999999999999999999888888888777767778888899999999999999999999999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++++|||+++++++..+...|+..+....++.|+++|+||+|+..
T Consensus 83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 83 IFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 999999999999999985589999998878999999999999753
No 5
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-31 Score=169.63 Aligned_cols=123 Identities=52% Similarity=1.037 Sum_probs=111.5
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
...+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+..++..+.+.+||+||++++...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34578999999999999999999999999888888888877766777788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|||+++++++..+...|+..+.+..++.|+++|+||+|+..
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 9999999999999984489999998888999999999999864
No 6
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=9.1e-32 Score=174.02 Aligned_cols=121 Identities=37% Similarity=0.685 Sum_probs=109.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
....+||+++|++|||||||+++|.++.+...+.+|.+..+......++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 34689999999999999999999999999988899998888777778888899999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|||+++++++..+...|+..+.+..+++|++||+||+|+.
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 99999999999995599999999988899999999999985
No 7
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.98 E-value=1.7e-31 Score=168.76 Aligned_cols=122 Identities=36% Similarity=0.719 Sum_probs=110.0
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
.....+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+.+||+||++.|...+..+++.+|++
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45678999999999999999999999999988888888877776777788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++|||+++++++..+...|+..+.+..++.|+++|+||+|+.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 999999999999997678999998887899999999999985
No 8
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.98 E-value=5.9e-31 Score=165.56 Aligned_cols=123 Identities=27% Similarity=0.409 Sum_probs=109.5
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
|...+.+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++.+|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 35567899999999999999999999999998888898888887778888888999999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
+++|||+++++++..+ ..|+..+.+.. .+.|+++|+||+|+..
T Consensus 81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 9999999999999998 88988886653 5899999999999853
No 9
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.98 E-value=3.7e-31 Score=166.09 Aligned_cols=125 Identities=33% Similarity=0.615 Sum_probs=107.7
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (127)
|+......+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 5667788999999999999999999999999888777787766654 466778888999999999999999999999999
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|++++|||++++.++..+ ..|+..+.+..++.|+++|+||+|+..
T Consensus 82 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 9999999999999999998 899999998888999999999999853
No 10
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.98 E-value=1.6e-31 Score=168.50 Aligned_cols=125 Identities=29% Similarity=0.633 Sum_probs=84.0
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (127)
|++.....+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 6667778999999999999999999999998887777777776654 456778888999999999999999999999999
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+|++++|||++++.++..+ ..|+..+.... +++|+++|+||+|+..
T Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 9999999999999999998 88999888764 6899999999999864
No 11
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=6.1e-31 Score=168.14 Aligned_cols=122 Identities=52% Similarity=0.959 Sum_probs=102.3
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
.....+||+++|++|+|||||+++|.++.+...+.+|....+...+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 34578999999999999999999999998888888888877777778888889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++|||++++.++..+...|+..+....+++|+++|+||+|+.
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 999999999999998448999999888899999999999985
No 12
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=5.2e-32 Score=170.32 Aligned_cols=125 Identities=84% Similarity=1.370 Sum_probs=93.7
Q ss_pred CCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 2 ~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
+|...+.+||+++|++|+|||||+++|..+.+...+.++.+..+......++..+.+++||+||++.+...+..+++.+|
T Consensus 2 s~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp -----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 56677889999999999999999999999998888888887766655566777788999999999999999999999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++++|||++++.++..+...|+..+....++.|+++|+||+|+..
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 999999999999999984489999998878999999999999743
No 13
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=7.8e-31 Score=165.33 Aligned_cols=122 Identities=66% Similarity=1.134 Sum_probs=110.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
..+.+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+++||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 34689999999999999999999999998888888887777777788888999999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|||++++.++..+...|+..+....++.|+++|+||+|+..
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 999999999999984489999988878999999999999853
No 14
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=2.4e-30 Score=166.04 Aligned_cols=125 Identities=32% Similarity=0.669 Sum_probs=110.4
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (127)
|+......+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 6666778899999999999999999999999998888888776664 456778888999999999999999999999999
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+|++++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 81 ~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 9999999999999999998 88999887765 6799999999999964
No 15
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=2e-30 Score=166.06 Aligned_cols=121 Identities=51% Similarity=0.963 Sum_probs=110.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
...+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 46799999999999999999999999998888888887776677788888999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+...|+..+....++.|+++|+||+|+..
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 99999999999986789999988878999999999999864
No 16
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=165.28 Aligned_cols=119 Identities=21% Similarity=0.389 Sum_probs=103.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
..+.+||+++|++|||||||+++|+++.+...+.+|.+..+......++..+.+++||++|++.+... ..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45689999999999999999999999999888889988887777778888899999999999988875 56899999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~~lv~nK~Dl~ 125 (127)
+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 97 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 97 VVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 99999999999998 88999887753 689999999999985
No 17
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=1.2e-30 Score=164.45 Aligned_cols=122 Identities=30% Similarity=0.482 Sum_probs=110.1
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
...+.+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34578999999999999999999999999988888888888877788889889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
++|||++++.++..+ ..|+..+.+. ..++|+++|+||+|+.+
T Consensus 94 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 94 LIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 999999999999998 8888888653 36899999999999864
No 18
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=8.6e-31 Score=169.32 Aligned_cols=121 Identities=43% Similarity=0.886 Sum_probs=90.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|+|||||+++|.++.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999999888888888877777777888888999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++..+...|+..+....+++|+++|+||+|+..
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 99999999999985589999988888999999999999864
No 19
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=1.4e-30 Score=163.44 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=100.3
Q ss_pred CCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 2 ~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
||...+.+||+++|++|||||||+++|.++.+.+ +.+|.+..+...+..++..+.+++||++|++. ..+++++|
T Consensus 1 Sm~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 4666789999999999999999999999999876 67888777777778888889999999999876 35788899
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhh----CCCCCEEEEeecCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLGR 124 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~~lv~nK~Dl 124 (127)
++++|||+++++++..+ ..|+..+... .+++|+++|+||+|+
T Consensus 75 ~~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp EEEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 99999999999999998 7776655443 268999999999998
No 20
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=4.5e-30 Score=163.25 Aligned_cols=123 Identities=32% Similarity=0.683 Sum_probs=109.2
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
......+||+++|++|+|||||+++|.++.+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 34557899999999999999999999999998888888776654 46777888899999999999999999999999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 91 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp EEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 99999999999999998 88999887765 5899999999999864
No 21
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=1.7e-30 Score=166.84 Aligned_cols=122 Identities=66% Similarity=1.145 Sum_probs=108.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
..+.+||+++|.+|+|||||+++|.++.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 35679999999999999999999999999888888888777777788888899999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|||++++.++..+...|+..+....++.|+++|+||+|+..
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 999999999999985589999998888999999999999753
No 22
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=3.9e-30 Score=162.31 Aligned_cols=124 Identities=28% Similarity=0.555 Sum_probs=109.1
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (127)
|+....+.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 555667889999999999999999999999998888788777655 4456778888899999999999999999999999
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+|++++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 83 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 83 AAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp CSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999999999999999998 88998887654 689999999999985
No 23
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=165.11 Aligned_cols=122 Identities=32% Similarity=0.437 Sum_probs=103.2
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
|...+.+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 34567899999999999999999999999999888888888776666677777899999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
+++|||+++++++..+ ..|+..+.... .++|+++|+||+|+.
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 9999999999999998 89999887753 579999999999985
No 24
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.1e-30 Score=164.81 Aligned_cols=121 Identities=50% Similarity=0.954 Sum_probs=104.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
...+||+++|++|+|||||+++|.++.+...+.++.+..+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45789999999999999999999999988888888877776667788888999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++..+...|+..+....++.|+++|+||+|+..
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 99999999999986789999988778999999999999853
No 25
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=2.3e-30 Score=162.53 Aligned_cols=124 Identities=32% Similarity=0.636 Sum_probs=91.3
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEEC-CeEEEEEEEeCCCcccccccCCCccc
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYR 78 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~ 78 (127)
|+......+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+..+ +..+.+.+||+||++.+...+..+++
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 666777899999999999999999999999998887777776554 3345555 55688999999999999999999999
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCCC
Q 033088 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLGRG 125 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~~lv~nK~Dl~ 125 (127)
.+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred cCCEEEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 99999999999999999998 88988876643 689999999999984
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=3.3e-30 Score=161.74 Aligned_cols=125 Identities=33% Similarity=0.544 Sum_probs=109.2
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (127)
|.....+.+||+++|++|+|||||+++|.+..+...+.++.+..+......++..+.+.+||+||++.+...+..+++.+
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 44456678999999999999999999999999888888888887777778888889999999999999999999999999
Q ss_pred cEEEEEEeCCChHHHHHHHHHHHHHHhh-h-CCCCCEEEEeecCCCCC
Q 033088 81 DVFVLAFSLVSRASYENVLKKWIPELQH-Y-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~-~~~~p~~lv~nK~Dl~~ 126 (127)
|++++|||++++.++..+ ..|+..+.+ . ..+.|+++|+||+|+..
T Consensus 82 d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp SEEEEEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred CEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999999998 788887744 2 36899999999999853
No 27
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=6.4e-30 Score=163.86 Aligned_cols=124 Identities=31% Similarity=0.614 Sum_probs=104.9
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG 79 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (127)
|+....+.+||+++|++|+|||||+++|.+..+...+.++.+.++ ...+..++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 666677899999999999999999999999998888788776555 4456667778899999999999999999999999
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLGRG 125 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~~lv~nK~Dl~ 125 (127)
+|++|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 81 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp CSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CcEEEEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 9999999999999999998 88888876653 478999999999986
No 28
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=2.5e-30 Score=160.38 Aligned_cols=119 Identities=26% Similarity=0.506 Sum_probs=106.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
+.+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888888888877777777788889999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
||++++.++..+ ..|+..+.+. .++.|+++|+||+|+.+
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 999999999998 7888887664 36899999999999853
No 29
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=5.1e-30 Score=159.15 Aligned_cols=121 Identities=36% Similarity=0.583 Sum_probs=106.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
.++.+||+++|++|+|||||+++|.++.+...+.++.+.++ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35689999999999999999999999998888888876555 44566788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|||++++.++..+ ..|+..+....++.|+++|+||+|+..
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 999999999999997 889998877668899999999999853
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=5.8e-30 Score=159.27 Aligned_cols=121 Identities=33% Similarity=0.624 Sum_probs=100.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
..+.+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 457899999999999999999999999988777788776664 4566778889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 999999999999998 89998887654 6899999999999853
No 31
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-29 Score=161.58 Aligned_cols=123 Identities=29% Similarity=0.589 Sum_probs=108.8
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
+.....+||+++|++|+|||||+++|++..+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 34567899999999999999999999999988887888776653 45667888899999999999999999999999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 83 ~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 83 GFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp EEEEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred EEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 99999999999999998 88999988765 6899999999999864
No 32
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=1e-29 Score=160.98 Aligned_cols=115 Identities=24% Similarity=0.363 Sum_probs=102.1
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
...+.+||+++|++|||||||+++|+++.+...+.++ ...+...+.+++..+.+++||++|++.+. +++.+|++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 3457899999999999999999999999998877777 44566778889989999999999998877 78889999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
++|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.
T Consensus 90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999999998 88999998764 689999999999983
No 33
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.4e-30 Score=163.75 Aligned_cols=120 Identities=32% Similarity=0.613 Sum_probs=107.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
..+.+||+++|++|+|||||+++|+++.+...+.++.+.++ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 45689999999999999999999999999888888877665 44677788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 103 i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 103 ILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999999999998 89999988765 579999999999985
No 34
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1e-29 Score=161.34 Aligned_cols=123 Identities=28% Similarity=0.634 Sum_probs=108.7
Q ss_pred CCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCC
Q 033088 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80 (127)
Q Consensus 2 ~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (127)
.....+.+||+++|++++|||||+++|.+..+...+.++.+.++ ...+..++..+.+.+||+||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34445789999999999999999999999998888888876665 34567788889999999999999999999999999
Q ss_pred cEEEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 81 DVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 89 d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp CEEEEEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred CEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 999999999999999998 89999988764 589999999999985
No 35
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=2.4e-29 Score=157.97 Aligned_cols=121 Identities=34% Similarity=0.579 Sum_probs=106.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||+++|++|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45689999999999999999999999998887777776655 34566778888999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 89 IIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 999999999999997 89998888765 6899999999999854
No 36
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=1.6e-29 Score=157.18 Aligned_cols=121 Identities=26% Similarity=0.564 Sum_probs=107.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
..+.+||+++|++|+|||||+++|.+..+.+.+.++.+.++ ......++....+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45689999999999999999999999998888788877666 34567788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhh-CCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
++|||++++.++..+ ..|+..+... .+++|+++|+||+|+..
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 999999999999998 8999998876 47899999999999853
No 37
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=3.8e-30 Score=164.87 Aligned_cols=121 Identities=31% Similarity=0.576 Sum_probs=100.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
..+.+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 45679999999999999999999999998877778876655 45667788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
|+|||++++.++..+ ..|+..+.... +++|++||+||+|+..
T Consensus 106 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 106 ILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp EEEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 999999999999998 89999988765 7899999999999853
No 38
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=3.9e-29 Score=158.48 Aligned_cols=121 Identities=31% Similarity=0.623 Sum_probs=107.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||+++|++|+|||||+++|++..+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 456899999999999999999999999988877787776664 4566777889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+..
T Consensus 99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 999999999999998 88999988765 6899999999999853
No 39
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=1.6e-29 Score=159.68 Aligned_cols=120 Identities=33% Similarity=0.551 Sum_probs=106.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
++.+||+++|++|+|||||+++|.++.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999999988888888877777778888988999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 9999999999998 88888887753 6899999999999863
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.1e-29 Score=156.79 Aligned_cols=122 Identities=32% Similarity=0.654 Sum_probs=99.0
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeeee-EEEECCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
.....+||+++|++|+|||||+++|.+..+.. .+.++.+..+.. ....++..+.+.+||+||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 45678999999999999999999999988853 566777666544 4567888899999999999999999999999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 86 ~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp EEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred EEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 99999999999999998 89999888765 6899999999999864
No 41
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=4.7e-30 Score=159.07 Aligned_cols=119 Identities=31% Similarity=0.564 Sum_probs=104.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
+.+||+++|++|+|||||++++.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 47999999999999999999999999888888888877777777888889999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
||+++++++..+ ..|+..+.+.. .+.|+++|+||+|+..
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 999999999998 88988887765 4899999999999853
No 42
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-29 Score=157.41 Aligned_cols=118 Identities=31% Similarity=0.596 Sum_probs=105.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
+.+||+++|++|+|||||+++|.++.+...+.++.+.++ ......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999998887788877665 3456778888999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 9999999999998 88998887765 689999999999985
No 43
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=1.9e-29 Score=160.19 Aligned_cols=120 Identities=28% Similarity=0.583 Sum_probs=103.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
..+.+||+++|++|+|||||+++|.++.+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 457899999999999999999999999988777777766553 4567788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 98 i~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 98 LLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 999999999999998 88999887764 689999999999985
No 44
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=1.1e-29 Score=159.06 Aligned_cols=121 Identities=29% Similarity=0.604 Sum_probs=107.4
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
...+.+||+++|++|+|||||+++|.+..+...+.++.+.++ ......++..+.+.+||+||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 345789999999999999999999999998877777776655 4456678888999999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999999999999997 89999887765 689999999999985
No 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=161.03 Aligned_cols=121 Identities=29% Similarity=0.560 Sum_probs=106.7
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
...+.+||+++|++|+|||||+++|++..+...+.++.+.++. .....++..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 4467899999999999999999999999988777888776664 346667778899999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+++|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.
T Consensus 99 iilV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp EEEEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999999999999998 89999988765 589999999999985
No 46
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=1.9e-29 Score=156.73 Aligned_cols=120 Identities=32% Similarity=0.602 Sum_probs=106.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
+.+.+||+++|++|+|||||+++|+++.+.+.+.++.+.++ ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35689999999999999999999999998887777776665 44566788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
++|||++++.++..+ ..|+..+.+.. +++|+++|+||+|+.
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 999999999999998 88988887763 789999999999985
No 47
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=162.56 Aligned_cols=121 Identities=31% Similarity=0.552 Sum_probs=109.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
....+||+++|++|||||||+++|.++.+...+.++.+..+...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 34679999999999999999999999998888888888777777788888899999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 91 CVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 99999999999998 89999888765 4899999999999853
No 48
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=5e-29 Score=157.90 Aligned_cols=121 Identities=33% Similarity=0.541 Sum_probs=97.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
..+.+||+++|.+|+|||||+++|+++.+...+.++.+..+...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 34679999999999999999999999988887778877777777778888899999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
+|||+++..++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 98 CVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 99999999999998 89998887754 4899999999999863
No 49
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=2.8e-29 Score=157.16 Aligned_cols=120 Identities=35% Similarity=0.675 Sum_probs=103.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45789999999999999999999999998888788877665 45667788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~~lv~nK~Dl~ 125 (127)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 84 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999999999999998 88988887643 678999999999985
No 50
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=1.5e-29 Score=156.62 Aligned_cols=118 Identities=30% Similarity=0.548 Sum_probs=105.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
+.+||+++|++|+|||||++++.++.+...+.++.+..+......++....+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999999888888888777777778888889999999999999999989999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 999999999998 78887776643 589999999999985
No 51
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=1.9e-29 Score=156.85 Aligned_cols=118 Identities=31% Similarity=0.644 Sum_probs=99.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
..+||+++|++|+|||||+++|.+..+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4789999999999999999999999988777777776553 456667778899999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 9999999999997 89998887765 689999999999984
No 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=3e-29 Score=158.87 Aligned_cols=122 Identities=36% Similarity=0.567 Sum_probs=106.4
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee--eEEEECCe---------EEEEEEEeCCCccccccc
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVVAEGT---------TVNLGLWDTAGQEDYNRL 72 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~D~~g~~~~~~~ 72 (127)
...+.+||+++|++|+|||||+++|.++.+.+.+.++.+..+. .....++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4567899999999999999999999999988877888776664 34445554 789999999999999999
Q ss_pred CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
+..+++.+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999999999998 89999888765 6899999999999853
No 53
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=2.9e-29 Score=159.07 Aligned_cols=120 Identities=31% Similarity=0.601 Sum_probs=105.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCccccc-ccCCCcccCCcE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADV 82 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~ 82 (127)
..+.+||+++|++|+|||||+++|+++.+...+.++.+.++ ...+..++..+.+.+||+||++.+. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 34679999999999999999999999998887778777655 4456778888999999999999998 788889999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRG 125 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~ 125 (127)
+++|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.
T Consensus 97 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 97 VVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999998 88999887763 689999999999985
No 54
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=1.5e-29 Score=159.41 Aligned_cols=120 Identities=31% Similarity=0.553 Sum_probs=107.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|+|||||+++|++..+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 46799999999999999999999999988888888887777777888888999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 96 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 96 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999998 88888887765 3899999999999853
No 55
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=3.9e-29 Score=155.10 Aligned_cols=117 Identities=20% Similarity=0.305 Sum_probs=81.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 87 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 87 (127)
.+||+++|++|+|||||+++|.+..+. ...++.+.++......++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 589999999999999999999876654 3345556666667778888999999999999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
|+++++++..+ ..|+..+.+.. ++.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 99999999998 88888887643 6899999999999864
No 56
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-29 Score=162.48 Aligned_cols=120 Identities=33% Similarity=0.573 Sum_probs=100.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||+++|++++|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 456799999999999999999999999988887788776664 4567788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
|+|||++++.++..+ ..|+..+.... .++|++||+||+|+.
T Consensus 90 ilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 90 LIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999999998 88999987764 589999999999985
No 57
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-29 Score=161.98 Aligned_cols=122 Identities=27% Similarity=0.426 Sum_probs=105.9
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
|...+.+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+.+||+||++. ...+..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 455678999999999999999999999999988888888877777778888889999999999988 7777888999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
+++|||+++++++..+ ..|+..+.... .++|+++|+||+|+..
T Consensus 102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 9999999999999998 88888887643 6899999999999853
No 58
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=5.3e-29 Score=155.57 Aligned_cols=120 Identities=22% Similarity=0.326 Sum_probs=90.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc--ccccCCCcccCCcEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--YNRLRPLSYRGADVF 83 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~ 83 (127)
.+.+||+++|++|+|||||+++|.+..+...+.++..+.+...+..++..+.+.+||++|++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357999999999999999999999988765544333333455677788888999999999987 566667788999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
++|||++++.++..+ ..|+..+.+. .++.|+++|+||+|+..
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 999999999999998 8898888765 35899999999999964
No 59
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.1e-29 Score=158.06 Aligned_cols=118 Identities=26% Similarity=0.515 Sum_probs=104.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
..+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 47899999999999999999999998887778887777766777788888999999999999999889999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRG 125 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~ 125 (127)
||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+.
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 999999999887 77877776643 589999999999985
No 60
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=5.3e-29 Score=158.23 Aligned_cols=122 Identities=34% Similarity=0.530 Sum_probs=107.1
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
...+.+||+++|++|+|||||+++|.+..+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 3456899999999999999999999999988777777766553 456677888999999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 101 vi~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 9999999999999997 88998887754 6899999999999853
No 61
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=162.07 Aligned_cols=120 Identities=30% Similarity=0.557 Sum_probs=96.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
..+.+||+++|++|+|||||+++|+++.+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 456899999999999999999999999988777777776653 4677788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 999999999999998 88999887765 589999999999984
No 62
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.6e-30 Score=165.23 Aligned_cols=123 Identities=32% Similarity=0.683 Sum_probs=103.7
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
.+....+||+++|++|+|||||+++|.+..+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 34467899999999999999999999998888777777665553 45677888899999999999999999999999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 108 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp EEEECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred EEEEEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 99999999999999998 88999987765 5899999999999863
No 63
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=1e-29 Score=164.81 Aligned_cols=122 Identities=30% Similarity=0.507 Sum_probs=108.5
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
.....+||+++|.+|||||||+++|+.+.+...+.++.+.++ ......++..+.+.+||++|++.+...+..+++.+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 445789999999999999999999888877777777776554 4456778888999999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+++|||++++.++..+ ..|+..+.+..+++|+++|+||+|+.+
T Consensus 91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 9999999999999998 899999999888999999999999864
No 64
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=5.4e-29 Score=153.88 Aligned_cols=119 Identities=33% Similarity=0.548 Sum_probs=106.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
+.+||+++|++|+|||||++++.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 36899999999999999999999998888878887777777777888889999999999999999888999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
||+++..++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 999999999998 88998887764 3899999999999864
No 65
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=160.70 Aligned_cols=120 Identities=33% Similarity=0.604 Sum_probs=96.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
..+.+||+++|++|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 45689999999999999999999999988877777776555 44566788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
|+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 999999999999998 89998887654 689999999999985
No 66
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=3.9e-29 Score=156.58 Aligned_cols=119 Identities=33% Similarity=0.547 Sum_probs=105.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
.+.+||+++|++|+|||||+++|+++.+...+.++.+.++ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3579999999999999999999999988887777776554 456677888889999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 92 VVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 99999999999997 88888887654 689999999999985
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=1.4e-29 Score=162.19 Aligned_cols=120 Identities=32% Similarity=0.418 Sum_probs=76.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC--CCCCCCCCceeeee-eeEEEECCe--EEEEEEEeCCCcccccccCCCcccCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNF-SANVVAEGT--TVNLGLWDTAGQEDYNRLRPLSYRGA 80 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (127)
...+||+++|++|+|||||+++|.+. .+...+.+|.+.++ ...+..++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999998 77777777776443 456667766 88999999999999999999999999
Q ss_pred cEEEEEEeCCChHHHHHHHHHHHHHHhhhCC----CCCEEEEeecCCCCC
Q 033088 81 DVFVLAFSLVSRASYENVLKKWIPELQHYSP----GVPVVLVGTKLGRGT 126 (127)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~~lv~nK~Dl~~ 126 (127)
|++++|||++++.++..+ ..|+..+....+ +.|+++|+||+|+..
T Consensus 98 d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred cEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 999999999999999998 899999987654 899999999999864
No 68
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.4e-29 Score=160.02 Aligned_cols=120 Identities=28% Similarity=0.569 Sum_probs=99.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||+++|++|+|||||+++|.++.+...+.++.+.++ ...+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45689999999999999999999999988877777776555 44567788889999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 103 ilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 103 ILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999998 89998888765 589999999999985
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=1.1e-28 Score=157.22 Aligned_cols=120 Identities=28% Similarity=0.537 Sum_probs=103.1
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeE--------------------------
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTT-------------------------- 55 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------------------------- 55 (127)
|+..+.+||+++|++|+|||||+++|++..+...+.++.+..+.. .+..++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 567789999999999999999999999999887777777655533 34444433
Q ss_pred -----------EEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 56 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 56 -----------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
..+.+||+||++.+...+..+++.+|++++|||++++.++..+ ..|+..+..... .|+++|+||+|+
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D~ 159 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKIDK 159 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTTC
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCCc
Confidence 8899999999999999999999999999999999999999997 899998887654 999999999994
No 70
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=160.30 Aligned_cols=122 Identities=24% Similarity=0.363 Sum_probs=98.2
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcee-eeeeeEEEECCeEEEEEEEeCCCcccccc-cCCCcccCCc
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGAD 81 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~ 81 (127)
.....+||+++|++|||||||+++|.+..+.....++.+ +.+...+.+++..+.+.+||++|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345679999999999999999999975444323333333 33455667788889999999999988765 7777889999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
++++|||++++.++..+ ..|+..+.... .++|+++|+||+|+..
T Consensus 99 ~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp EEEEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred EEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 99999999999999998 88999887765 5899999999999964
No 71
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.9e-30 Score=163.96 Aligned_cols=121 Identities=32% Similarity=0.621 Sum_probs=107.1
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
.....+||+++|++|+|||||+++|.++.+...+.++.+.++. .....++..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 3457899999999999999999999999988887777765553 456667777899999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.
T Consensus 99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 99 FILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999999999999998 88999998866 689999999999985
No 72
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=1.4e-29 Score=158.70 Aligned_cols=120 Identities=30% Similarity=0.529 Sum_probs=102.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECC-eEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
..+.+||+++|++|+|||||+++|.++.+...+.++.+.++ ...+..++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999999888766667765443 44566665 67899999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC---CCCC-EEEEeecCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS---PGVP-VVLVGTKLGRG 125 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~~lv~nK~Dl~ 125 (127)
+++|||++++.++..+ ..|+..+.... .+.| +++|+||+|+.
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 9999999999999997 88998887743 2455 89999999985
No 73
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=7.1e-29 Score=158.02 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=96.2
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
......||+++|++|||||||+++|.+..+.. .+.+|.+.... .+ +...+.+.+||++|++.+...+..+++.+|+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 89 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDA 89 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence 34578999999999999999999999999887 77777763332 22 3345789999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC---------CCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS---------PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~~lv~nK~Dl~~ 126 (127)
+|+|||+++++++..+ ..|+..+.+.. +++|+++|+||+|+..
T Consensus 90 ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 90 VIFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp EEEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred EEEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 9999999999999998 77777665531 2899999999999865
No 74
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.1e-28 Score=157.35 Aligned_cols=120 Identities=31% Similarity=0.630 Sum_probs=104.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+||+++|++++|||||+++|++..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 345799999999999999999999999988777787776654 4567788888999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 97 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 97 ILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999999999997 88998887765 479999999999984
No 75
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=9.4e-29 Score=153.77 Aligned_cols=117 Identities=24% Similarity=0.360 Sum_probs=88.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcee-eeeeeEEEECCeEEEEEEEeCCCcccccc-cCCCcccCCcEEEE
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVL 85 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 85 (127)
.+||+++|++|+|||||+++|.+..+.....++.. ..+...+..++..+.+.+||++|++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998776655444433 34455677888889999999999998876 77778899999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCC--CCCEEEEeecCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLGRG 125 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~~lv~nK~Dl~ 125 (127)
|||+++++++..+ ..|+..+....+ +.|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 9999999999998 888888877654 89999999999985
No 76
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.4e-29 Score=158.99 Aligned_cols=121 Identities=26% Similarity=0.490 Sum_probs=106.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
....+||+++|++|+|||||+++|.++.+...+.++.+..+......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45679999999999999999999999998888888887777777777888899999999999999999899999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~~ 126 (127)
+|||++++.++..+ ..|+..+.+.. ++.|+++|+||+|+..
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99999999999987 77777665542 5789999999999863
No 77
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.1e-28 Score=157.33 Aligned_cols=120 Identities=19% Similarity=0.370 Sum_probs=95.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCC--CCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc-ccccCCCcccCCc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGAD 81 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 81 (127)
....+||+++|++|+|||||+++|.+.. +...+.++..+.+...+.+++..+.+.+||++|++. ++.+...+++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 4567999999999999999999999643 344433333334455677888889999999999876 5556778889999
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCC
Q 033088 82 VFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRG 125 (127)
Q Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~ 125 (127)
++++|||++++.+|..+ ..|...+.+. .+++|++||+||+|+.
T Consensus 114 ~~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred EEEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 99999999999999998 7888877653 3589999999999985
No 78
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=1.1e-28 Score=156.49 Aligned_cols=117 Identities=26% Similarity=0.367 Sum_probs=99.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|+|||||+++|.++.+...+.+|.+..+.. +..+ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 467999999999999999999999999887777877765543 2333 4689999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+ ..|+..+.+. ..+.|+++|+||+|+..
T Consensus 97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 9999999999998 6777666543 36899999999999864
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.96 E-value=4.7e-29 Score=158.40 Aligned_cols=121 Identities=26% Similarity=0.306 Sum_probs=97.2
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCC-----------CCceeeeeee-EE-EECCeEEEEEEEeCCCccccc
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----------IPTVFDNFSA-NV-VAEGTTVNLGLWDTAGQEDYN 70 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~-----------~~~~~~~~~~-~~-~~~~~~~~~~~~D~~g~~~~~ 70 (127)
.....+||+++|++|+|||||++. +.+.+...+ .+|.+.++.. .. ..++..+.+++||+||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 446789999999999999999954 445555443 2344444322 23 456778899999999999999
Q ss_pred ccCCCcccCCcEEEEEEeCC------ChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 71 RLRPLSYRGADVFVLAFSLV------SRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+..+++.+|++++|||++ +.+++..+ ..|+..+....+++|+++|+||+|+.+
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhccc
Confidence 99999999999999999999 56777777 789888876668999999999999864
No 80
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=5.8e-29 Score=160.69 Aligned_cols=122 Identities=39% Similarity=0.620 Sum_probs=104.7
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCe----------EEEEEEEeCCCccccccc
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGT----------TVNLGLWDTAGQEDYNRL 72 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~D~~g~~~~~~~ 72 (127)
...+.+||+++|++++|||||+++|++..+...+.++.+..+. ..+.+++. .+.+.+||+||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 3467899999999999999999999999887777777766553 34555554 688999999999999999
Q ss_pred CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC--CCCCEEEEeecCCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~~lv~nK~Dl~~ 126 (127)
+..+++.+|++++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 99999999999999999999999998 89999887755 6899999999999853
No 81
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=4.7e-28 Score=154.84 Aligned_cols=116 Identities=19% Similarity=0.287 Sum_probs=90.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|||||||+++|.++.+. .+.+|.+.. ...+..++ +.+.+|||||++.++..+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999988764 455665543 33455565 789999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+ ..|+..+.+. ..+.|+++|+||+|+.+
T Consensus 99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 9999999999998 7788777553 36899999999999864
No 82
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.6e-27 Score=151.46 Aligned_cols=116 Identities=17% Similarity=0.281 Sum_probs=95.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|+|||||++++.++.+. .+.+|.+.. ...+..++ +.+.+||+||++.++..+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999998875 445565543 33455565 789999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+ ..|+..+.+. ..+.|+++|+||+|+.+
T Consensus 97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 9999999999998 7787777543 36899999999999864
No 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=7.7e-28 Score=151.97 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=97.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|+|||||++++.++. ...+.+|.+... ..+..+ ...+++||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 578999999999999999999999888 566667766332 334444 3689999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++..+ ..|+..+.+. .++.|+++|+||+|+..
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 9999999999998 7777766543 36899999999999864
No 84
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=7.3e-28 Score=163.92 Aligned_cols=120 Identities=65% Similarity=1.157 Sum_probs=110.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
...+||+++|.+|+|||||++++.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 35689999999999999999999999998888888888877778888889999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|||++++.++..+...|+..+....++.|+++|+||+|+.
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 9999999999998558999998887899999999999984
No 85
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=4.7e-28 Score=152.61 Aligned_cols=117 Identities=18% Similarity=0.269 Sum_probs=95.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
..+.+||+++|++|+|||||+++|.++.+ ..+.++.+... ..+..++ ..+.+||++|++.+...+..+++.+|+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45689999999999999999999999887 44455555333 3344454 78999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
+|||+++++++..+ ..|+..+.+. ..+.|+++|+||+|+..
T Consensus 94 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 94 VVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp EEEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 99999999999998 6777666553 37899999999999864
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=8.8e-28 Score=152.33 Aligned_cols=117 Identities=15% Similarity=0.276 Sum_probs=96.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCC-CCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
.+.+||+++|.+|+|||||+++|.+.. +...+.+|.+.. ...+..++ ..+.+||++|++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999887 555666666532 33344444 68999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC----CCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~~lv~nK~Dl~~ 126 (127)
+|||++++.++..+ ..|+..+.+.. .+.|+++|+||+|+.+
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 99999999999998 77777765543 5899999999999964
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.9e-28 Score=153.17 Aligned_cols=116 Identities=17% Similarity=0.255 Sum_probs=94.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|||||||+++|.++.+. .+.+|.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999988876 555665532 23344554 789999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+ ..|+..+.+. ..+.|+++|+||+|+.+
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 9999999999998 7788777664 36899999999999964
No 88
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.8e-30 Score=166.40 Aligned_cols=121 Identities=67% Similarity=1.167 Sum_probs=108.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|+|||||+++|.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 57899999999999999999999999888887888877776666777778889999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++..+...|+..+....++.|+++|+||+|+..
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 99999999999984489999988777899999999999863
No 89
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.95 E-value=4.1e-28 Score=150.18 Aligned_cols=113 Identities=18% Similarity=0.257 Sum_probs=93.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEe
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 88 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 88 (127)
+||+++|++|+|||||+++|.++.+.. +.||.+.. ...+.. ..+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999888764 45555522 222333 34689999999999999988889999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 89 LVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 89 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
+++++++..+ ..|+..+... .++.|+++|+||+|+.+
T Consensus 77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 9999999998 7777776543 36899999999999964
No 90
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=3e-28 Score=157.43 Aligned_cols=121 Identities=29% Similarity=0.485 Sum_probs=101.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeE-EEE-CCeEEEEEEEeCCCcccccccCCCcccCCcE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 82 (127)
....+||+++|++|+|||||+++|+++.+...+.++.+..+... ... ++..+.+.+||++|++.+...+..+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 45689999999999999999999999888877677766555433 222 3445889999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 88 AILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 9999999999999998 89999988765 4599999999999864
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=2.4e-27 Score=147.49 Aligned_cols=116 Identities=18% Similarity=0.224 Sum_probs=95.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|+|||||+++|.++.+.. +.++.+.. ...+..+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 457999999999999999999999888753 45555433 2334444 4689999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++..+ ..|+..+... ..+.|+++|+||+|+..
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 9999999999998 6666665443 26899999999999864
No 92
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.95 E-value=1.6e-28 Score=155.31 Aligned_cols=118 Identities=23% Similarity=0.361 Sum_probs=89.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC--CCCCCCCCceeeeeee-EEEE---CCeEEEEEEEeCCCcccccccCCCcccCCc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSA-NVVA---EGTTVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~--~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 81 (127)
.+||+++|++|||||||+++|.+. .+...+.+|.+..+.. .+.. ++..+.+.+||++|++.|...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 4555566776655432 2222 235678999999999999999999999999
Q ss_pred EEEEEEeCCCh-HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 82 VFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 82 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+..
T Consensus 82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 99999999987 578887 899999887777899999999999864
No 93
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=6.8e-27 Score=148.86 Aligned_cols=119 Identities=19% Similarity=0.366 Sum_probs=92.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC--CCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc-ccccCCCcccCCcE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADV 82 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~ 82 (127)
...+||+++|++|||||||+++|.+. .+...+.++..+.+...+.+++..+.+.+||++|++. ++.+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 45799999999999999999999953 3444433333334455677888889999999999876 55677778899999
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCC
Q 033088 83 FVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRG 125 (127)
Q Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~ 125 (127)
+++|||+++++++..+ ..|...+.+. .++.|+++|+||+|+.
T Consensus 84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 9999999999999998 8888877654 2589999999999985
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=1.5e-27 Score=150.47 Aligned_cols=116 Identities=22% Similarity=0.316 Sum_probs=94.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
...+||+++|++|+|||||+++|.+..+. .+.+|.+.. ...+..+ .+.+.+||++|++.++..+..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE-EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 57899999999999999999999987542 334444422 2334444 3689999999999999988999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+ ..|+..+.+. ..+.|+++|+||+|+.+
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 9999999999998 7777766443 36899999999999864
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=9.5e-28 Score=153.04 Aligned_cols=118 Identities=14% Similarity=0.201 Sum_probs=89.6
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee---eEEEE-CCeEEEEEEEeCCCcccccccC---CCc
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS---ANVVA-EGTTVNLGLWDTAGQEDYNRLR---PLS 76 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~D~~g~~~~~~~~---~~~ 76 (127)
...+.+||+++|++|||||||++++.+. +... ++.+..+. ....+ ++..+.+++||++|++.|.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 4567899999999999999999987764 3333 23322221 12223 2556789999999999987776 789
Q ss_pred ccCCcEEEEEEeCCCh--HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 77 YRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++++|++|+|||++++ +++..+ ..|+..+....+++|++||+||+|+.
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred cccCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccC
Confidence 9999999999999997 677776 77888776667899999999999974
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=1.7e-27 Score=151.61 Aligned_cols=116 Identities=17% Similarity=0.251 Sum_probs=90.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|+|||||+++|..+.+.. +.+|.+.. ...+..+ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 568999999999999999999999887753 34444422 2233333 3789999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+ ..|+..+... .++.|+++|+||+|+.+
T Consensus 103 v~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 103 VVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 9999999999998 7777776543 26899999999999964
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=3.8e-27 Score=149.19 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=95.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|+|||||++++..+.+.. +.+|.+.. ...+..+ ...+.+|||||++.+...+..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 578999999999999999999999877653 44555422 2234444 3689999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+ ..|+..+... .++.|+++|+||+|+..
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 9999999999998 6666666443 26899999999999864
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=2.1e-27 Score=149.43 Aligned_cols=116 Identities=14% Similarity=0.219 Sum_probs=92.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|++|+|||||++++.++.+ ..+.++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998776 4445555432 23344443 789999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||++++.++..+ ..|+..+.+. ..+.|+++|+||+|+..
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 9999999999998 7787777664 37899999999999864
No 99
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=5.8e-27 Score=151.00 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=92.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCe-EEEEEEEeCCCcccccc-cCCCcccCCcE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNR-LRPLSYRGADV 82 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~~~ 82 (127)
..+.+||+++|++|+|||||+++|+++.+...+.++...... +..++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 456899999999999999999999999887776544432222 444533 57899999999999987 78888999999
Q ss_pred EEEEEeCCChH-HHHHHHHHHHHHHhhh---CCCCCEEEEeecCCCCC
Q 033088 83 FVLAFSLVSRA-SYENVLKKWIPELQHY---SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 83 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~~lv~nK~Dl~~ 126 (127)
+++|||+++.. ++......|...+... .+++|+++|+||+|+..
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 99999999854 4666545666665542 35799999999999864
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=7.4e-26 Score=144.57 Aligned_cols=119 Identities=34% Similarity=0.627 Sum_probs=101.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
...+|++++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4579999999999999999999999988877777776555 446778888899999999999999988888999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
+|||+++..++..+ ..|+..+.... .+.|+++++||+|+.
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 99999999999887 78888876654 578999999999985
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=5.1e-27 Score=159.30 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=86.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccc---cCCCcccCCcEE
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---LRPLSYRGADVF 83 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~ 83 (127)
||+++|++|+|||||++++.++.++. .+.+|.+..+.. ++ ..+.+++|||+||++|+. .+..|+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 79999999999999999887654432 245666655542 23 347899999999999974 357899999999
Q ss_pred EEEEeCCCh--HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|+|||++++ +..... ..|+..+.+..+++|++++|||+|+..
T Consensus 77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 999999997 333333 445666666678999999999999964
No 102
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=2e-26 Score=156.19 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=93.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCC---CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccc-----cccCCCccc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPLSYR 78 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~ 78 (127)
..+||+++|++|||||||+++|+++... ..+.+|.+..+.. ..+++ .+.+.+||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~-~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH-LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE-EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE-EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 4689999999999999999999987332 1344555544432 33444 578999999999988 778888899
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHH---HHhhhCCCCCEEEEeecCCCCC
Q 033088 79 GADVFVLAFSLVSRASYENVLKKWIP---ELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~---~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|++++|||+++++++.++ ..|.. .+....+++|+++|+||+|+..
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 99999999999999999987 66644 4455567999999999999864
No 103
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.94 E-value=1.4e-25 Score=142.71 Aligned_cols=120 Identities=32% Similarity=0.589 Sum_probs=105.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
....+|++++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+++||++|++++...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 34679999999999999999999999998888888887666 44677888888999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
++|||.++..++.++ ..|+..+.... .+.|+++++||+|+.
T Consensus 106 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 106 LLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999887 78888776643 578999999999985
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.93 E-value=6.8e-25 Score=137.27 Aligned_cols=116 Identities=17% Similarity=0.253 Sum_probs=89.7
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 83 (127)
..+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++. .+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 45789999999999999999999999988776666554433 334555653 578999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|+|++++...... .++..+.. .+.|+++|+||+|+..
T Consensus 83 i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPE 121 (178)
T ss_dssp EEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSC
T ss_pred EEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCc
Confidence 999999884322221 22233332 5799999999999864
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=5.9e-25 Score=157.18 Aligned_cols=116 Identities=20% Similarity=0.299 Sum_probs=95.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 85 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 85 (127)
.+.+||+++|.+|+|||||+++|.+..+.. +.+|.+..+.. +.. ..+.+.+|||+|++.++.++..+++.+|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~-~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET-VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE-EES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEE-EEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 457999999999999999999999988653 45565544322 233 34689999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
|||+++++++..+ ..|+..+.+. ..++|++||+||+|+..
T Consensus 396 V~D~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 396 VVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred EEECcchhHHHHH-HHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 9999999999998 6666666443 26899999999999853
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=5.2e-26 Score=155.48 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=86.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 86 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 86 (127)
+.+||+++|.+++|||||+++|.++.+... .+|.+..+ ..+.. ..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~-~~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE-EEEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE-EEEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 567999999999999999999998886543 23433322 12233 346899999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
||++++.++..+...|...+.... +++|++||+||+|+.+
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 999999999998444444444432 6899999999999864
No 107
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.92 E-value=7.5e-26 Score=149.84 Aligned_cols=121 Identities=19% Similarity=0.326 Sum_probs=92.1
Q ss_pred CcceeEEEEECCC---------CCcHHHHHHHHhc---CCCCCCCCCce-eeeee-eEE--------------EECCeEE
Q 033088 5 ASRFIKCVTVGDG---------AVGKTCMLICYTS---NKFPTDYIPTV-FDNFS-ANV--------------VAEGTTV 56 (127)
Q Consensus 5 ~~~~~ki~iiG~~---------~~GKssl~~~l~~---~~~~~~~~~~~-~~~~~-~~~--------------~~~~~~~ 56 (127)
....+||+++|++ |||||||+++|.+ +.+...+.+++ +..+. ..+ ..++..+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567999999999 9999999999999 56666666665 33332 111 1456678
Q ss_pred EEEEEe-----------------------CCCcccccccCCCccc---------------------CCcEEEEEEeCCCh
Q 033088 57 NLGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFVLAFSLVSR 92 (127)
Q Consensus 57 ~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~ 92 (127)
.+++|| ++|++.|..++..+++ ++|++|+|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 999999 7788888888888887 79999999999998
Q ss_pred --HHHHHHHHHHHHHHhhh--CCCCCEEEEeecCCCCC
Q 033088 93 --ASYENVLKKWIPELQHY--SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 93 --~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~Dl~~ 126 (127)
.++..+ ..|+..+.+. .+++|++||+||+|+..
T Consensus 176 ~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 176 MNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ---CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBC
T ss_pred chhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccc
Confidence 899998 8899888765 36899999999999853
No 108
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-25 Score=142.46 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=85.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCC---CCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccC---
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG--- 79 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~--- 79 (127)
...++|+++|++|||||||+++|.+..+... ..++.+..+ ....+.+||+||++.+...+..+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 4678999999999999999999999876542 222222111 34568899999999998887777766
Q ss_pred -CcEEEEEEeCC-ChHHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCCCC
Q 033088 80 -ADVFVLAFSLV-SRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~~lv~nK~Dl~~ 126 (127)
+|++++|||++ +..++..+ ..|+..+... .++.|+++|+||+|+..
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 89999999999 88999887 6666665432 25899999999999865
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.4e-25 Score=144.82 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=90.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCC---CCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccC--
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG-- 79 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~-- 79 (127)
....++|+++|++|+|||||+++|.+..+.. .+.++.+..+ ....+.+||+||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 4578999999999999999999999987654 2334333322 34568999999999998888888877
Q ss_pred --CcEEEEEEeCC-ChHHHHHHHHHHHHHHhhh-----CCCCCEEEEeecCCCCC
Q 033088 80 --ADVFVLAFSLV-SRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~~lv~nK~Dl~~ 126 (127)
+|++++|+|++ ++.++... ..|+..+... ..++|+++|+||+|+..
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 89999999999 88888887 6666665442 36899999999999864
No 110
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=9.7e-24 Score=142.67 Aligned_cols=117 Identities=20% Similarity=0.177 Sum_probs=83.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCC-CCC-ceeeeeeeEEEECCeEEEEEEEeCCCccc--------ccccCCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIP-TVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPL 75 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~ 75 (127)
.+..+|+++|.+|+|||||+|+|++..+... ..+ ++.......... ...++.+|||||..+ +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 5667899999999999999999999877532 222 221111112222 246799999999876 3344556
Q ss_pred cccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+++.+|++++|+|++++.+... ..+.+.+.+..++.|+++|+||+|+..
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 7899999999999988644433 344566766556899999999999864
No 111
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.91 E-value=3.1e-24 Score=154.73 Aligned_cols=119 Identities=23% Similarity=0.317 Sum_probs=90.3
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEE---------EECCeEEEEEEEeCCCcccccccCC
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV---------VAEGTTVNLGLWDTAGQEDYNRLRP 74 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~D~~g~~~~~~~~~ 74 (127)
.....+||+++|.+|||||||++++.+..+...+.+|.+..+.... ..++..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999999988777787766554321 1223457899999999999999999
Q ss_pred CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+++.+|++++|||+++. ... ..|+..+....++.|+++|+||+|+..
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNK-HYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGH-HHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred HHccCCcEEEEEEeCCCc---hhH-HHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 999999999999998765 344 788888888888899999999999864
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.90 E-value=1.2e-23 Score=129.53 Aligned_cols=112 Identities=22% Similarity=0.192 Sum_probs=76.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeeeeEEEECCeEEEEEEEeCCCcccc-------cccCCCcccC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-------NRLRPLSYRG 79 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~ 79 (127)
.||+++|++|+|||||++++.+..+.. ....+...........++. .+.+||+||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 689999999999999999999887542 2222222223334455553 6889999998873 3344567889
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|++++|+|.++..+... ..+...+.+ .+.|+++|+||+|+..
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPK 122 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGG
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECccccc
Confidence 999999999988543332 233333333 4789999999999864
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.90 E-value=2.9e-24 Score=136.36 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=80.1
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCC----------ccccccc
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAG----------QEDYNRL 72 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g----------~~~~~~~ 72 (127)
.....++|+++|++|+|||||+++|++..+...+.++.+.+... ....++ .+.+||||| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 34568999999999999999999999987666555555444322 233343 589999999 6677777
Q ss_pred CCCcccCC---cEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 73 RPLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+..+++.+ |++++|+|++++.++... .+...+.. .+.|+++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSC
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCC
Confidence 77777766 999999999987766653 33444444 5789999999999864
No 114
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.90 E-value=4e-23 Score=128.37 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=79.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccc------cCCCccc--
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSYR-- 78 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~-- 78 (127)
.++|+++|++|+|||||+++|.+..+.....++.+... ...+..++ ..+.+|||||++.+.. +...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998776554444433222 23344454 5799999999987753 2345554
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++|++++|+|.++.++ . ..|+..+.+ .+.|+++|+||+|+.
T Consensus 81 ~~~~~i~v~D~~~~~~---~-~~~~~~~~~--~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 81 KPDLVVNIVDATALER---N-LYLTLQLME--MGANLLLALNKMDLA 121 (165)
T ss_dssp CCSEEEEEEETTCHHH---H-HHHHHHHHH--TTCCEEEEEECHHHH
T ss_pred CCCEEEEEecCCchhH---h-HHHHHHHHh--cCCCEEEEEEchHhc
Confidence 8999999999988543 2 456666665 479999999999974
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.90 E-value=1.3e-23 Score=131.47 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=83.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccC--------CCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 76 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 76 (127)
...||+++|++|+|||||+++|.+..+. ..+..+....+...+..++. .+.+|||||+..+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999987643 22222322333445666664 48899999986542211 135
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLGRG 125 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~ 125 (127)
++.+|++++|||++++.++.. ..|+..+.+.. .++|+++|+||+|+.
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCC
Confidence 789999999999999887764 46777766554 579999999999974
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=1.6e-23 Score=136.37 Aligned_cols=119 Identities=10% Similarity=0.055 Sum_probs=81.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCccccc---------ccCCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN---------RLRPL 75 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~ 75 (127)
...+||+++|++|+|||||+++|++..+.....+...... ......++ ..+.+|||||+.... .....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 5679999999999999999999998876422222111111 11222232 679999999983311 11123
Q ss_pred cccCCcEEEEEEeCCChHHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 76 SYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++..+|++++|||++++.++... ...|+..+....++.|+++|+||+|+..
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 46788999999999998776522 2467777776556899999999999864
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.89 E-value=6.6e-23 Score=139.00 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=89.0
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee--eEEEECCeEEEEEEEeCCCccccc----------
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVVAEGTTVNLGLWDTAGQEDYN---------- 70 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~---------- 70 (127)
+.+...-.|+++|.+|+|||||+|+|++..+......+..+... .....+ ....+.+|||||+.++.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 35667889999999999999999999998775332222111221 222222 14679999999986654
Q ss_pred ccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.....+++.+|++++|+|+++..+.... ..|+..+.. .+.|+++|+||+|+.
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~--~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKP--LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGG--GCCCEEEEEECGGGS
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHh--cCCCEEEEEECccCC
Confidence 4555678899999999999998888886 777888887 579999999999986
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.88 E-value=7.1e-24 Score=133.85 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=83.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCC-----------cccccccCCCcc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLRPLSY 77 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~ 77 (127)
+||+++|++|+|||||+++|.+..+...+.++.+.. ......+ .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 699999999999999999999998876666544322 2222333 588999999 666777777777
Q ss_pred cC-CcEEEEEEeCCChHHHHHHHHHHHHH--------H-hhh-CCCCCEEEEeecCCCCC
Q 033088 78 RG-ADVFVLAFSLVSRASYENVLKKWIPE--------L-QHY-SPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 78 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~--------~-~~~-~~~~p~~lv~nK~Dl~~ 126 (127)
+. ++++++++++.+..++.++...|... + ... ..+.|+++|+||+|+..
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccC
Confidence 77 77777777777777787765666542 1 111 26899999999999865
No 119
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=1.4e-22 Score=127.82 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=82.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCccccc------ccCCCcc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSY 77 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~ 77 (127)
..+.+||+++|++|+|||||+++|.+..+.....++.+... ...+..++ ..+.+|||||++.+. .++..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 34679999999999999999999998765444334333222 33444444 679999999998774 2344555
Q ss_pred c--CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 78 R--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 78 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+ .++++++|+|.++ +... ..|+..+.. .+.|+++|+||+|+.
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~-~~~~~~~~~--~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERN-LYLTLQLME--MGANLLLALNKMDLA 125 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHH-HHHHHHHHT--TTCCEEEEEECHHHH
T ss_pred hccCCCEEEEEecchh---HHHH-HHHHHHHHh--cCCCEEEEEEhhhcc
Confidence 4 5999999999875 4444 667777765 578999999999974
No 120
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.87 E-value=4.2e-22 Score=132.27 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=82.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCccc-----
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR----- 78 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~----- 78 (127)
.+.++|+++|..|+|||||+++|++.... ..+.++...........++ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 46799999999999999999999987753 2222222222233344444 47999999999887665555543
Q ss_pred ----CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-CC--CCEEEEeecCCCC
Q 033088 79 ----GADVFVLAFSLVSRASYENVLKKWIPELQHYS-PG--VPVVLVGTKLGRG 125 (127)
Q Consensus 79 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~p~~lv~nK~Dl~ 125 (127)
.+|++++|++++... +......|++.+.+.. .+ .|+++|+||+|+.
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999987644 4433356777776643 22 4899999999985
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.87 E-value=3.4e-22 Score=126.50 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=79.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeE-EEECCeEEEEEEEeCCC----------cccccccC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAG----------QEDYNRLR 73 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g----------~~~~~~~~ 73 (127)
....+||+++|++|+|||||+++|++..+. ...++.+.+.... ...+. .+.+||+|| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 456789999999999999999999988743 3344444333222 22232 477999999 66676666
Q ss_pred CCcccCC---cEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 74 PLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+++.+ +++++|+|.++..+.... .+...+.. .+.|+++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS--LNIPFTIVLTKMDKVK 147 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEEChhcCC
Confidence 6677655 999999998875333331 22333333 2789999999999853
No 122
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.87 E-value=1.1e-21 Score=130.09 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=81.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccC------CCcc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLR------PLSY 77 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~------~~~~ 77 (127)
..+.+||+++|++|||||||+++|.+..+.....+..+.... ..+..++ ..+.+||+||+..+.... ..++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 356799999999999999999999987765433343322222 2233333 689999999998776532 4455
Q ss_pred --cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 78 --RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..+|++++|+|+++.++.. .|...+.+ .+.|+++|+||+|+.
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~----~~~~~l~~--~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSL----YLLLEILE--MEKKVILAMTAIDEA 123 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHH----HHHHHHHT--TTCCEEEEEECHHHH
T ss_pred hhcCCCEEEEEeCCCchhhHH----HHHHHHHh--cCCCEEEEEECcCCC
Confidence 5899999999999876533 35555554 479999999999973
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.86 E-value=1.4e-21 Score=139.08 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=68.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccC--------CCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 76 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 76 (127)
..+||+++|.+|+|||||+|+|.+.... .....++.+.....+..++ ..+.+|||||+.++...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4689999999999999999999987532 2222333333344556665 579999999987765433 346
Q ss_pred ccCCcEEEEEEeCCChHHHHHH--HHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++.+|++++|+|.+++.++... ...|+..+. +.|+++|+||+|+..
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP----AAKFLTVANKLDRAA 357 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT----TSEEEEEEECTTSCT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC----CCCEEEEEECcCCCC
Confidence 8899999999999988776432 134444443 799999999999864
No 124
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.86 E-value=2.2e-21 Score=129.29 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=80.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCC--CCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCC--------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD--YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL-------- 75 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-------- 75 (127)
...++|+++|.+|+|||||+|+|++..+... ..++... ............+.+|||||..++......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR--PVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS--CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee--eEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 3579999999999999999999998775322 1222111 122222223467999999999776543321
Q ss_pred -cccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCC-C--CCEEEEeecCCCCC
Q 033088 76 -SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-G--VPVVLVGTKLGRGT 126 (127)
Q Consensus 76 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~~lv~nK~Dl~~ 126 (127)
..+.+|++++|+|++.. ++......|+..+.+... + .|+++|+||+|+..
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 13469999999998653 344433577777765432 2 69999999999864
No 125
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.86 E-value=2.8e-22 Score=129.68 Aligned_cols=118 Identities=14% Similarity=0.038 Sum_probs=80.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEEC-CeEEEEEEEeCCCc----------cccccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQ----------EDYNRL 72 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~D~~g~----------~~~~~~ 72 (127)
....++|+++|.+|+|||||+++|++..+......+.+.+.. ...... .....+.+|||||. +.+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 346789999999999999999999988632222222222221 122232 33457899999994 334445
Q ss_pred CCCcccC---CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 73 RPLSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
...+++. +|++++|+|.++..+... ..|+..+.. .+.|+++|+||+|+..
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEeccccCC
Confidence 5555554 788999999987544333 566677766 5789999999999864
No 126
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=5.3e-22 Score=131.48 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=79.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccc----------cCCCcc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR----------LRPLSY 77 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 77 (127)
.+|+++|.+|||||||+|+|.+..+.....++.+... ...+..++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 5899999999999999999998765544444443333 334445553 789999999977654 445566
Q ss_pred --cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 78 --RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+.+|++++|+|+++.++...+ ...+.+ .+.|+++|+||+|+.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~--~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL----TSQLFE--LGKPVVVALNMMDIA 123 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH----HHHHTT--SCSCEEEEEECHHHH
T ss_pred hhCCCCEEEEEeeCCCchhHHHH----HHHHHH--cCCCEEEEEEChhcC
Confidence 899999999999986655443 333443 379999999999963
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=1.1e-21 Score=131.02 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=80.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCccccc------ccCCCccc--
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSYR-- 78 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 78 (127)
..+||+++|++|||||||+++|.+........+..+.. .....++. ...+.+|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 46899999999999999999999876544433422211 22333444 5579999999998775 34455564
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
.+|++++|+|+++.++. ..|...+.+ .+.|+++++||+|+.
T Consensus 80 ~~d~vi~V~D~t~~e~~----~~~~~~l~~--~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 80 RADSILNVVDATNLERN----LYLTTQLIE--TGIPVTIALNMIDVL 120 (272)
T ss_dssp CCSEEEEEEEGGGHHHH----HHHHHHHHH--TCSCEEEEEECHHHH
T ss_pred CCCEEEEEecCCchHhH----HHHHHHHHh--cCCCEEEEEEChhhC
Confidence 69999999999886543 345555554 579999999999973
No 128
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=9.4e-22 Score=131.42 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=78.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCccccccc----------CCC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL----------RPL 75 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~ 75 (127)
++++|+++|.+|||||||+|+|.+..+.....+..+... ...+..++ ..+.+|||||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999998776444444433222 22334444 36789999999877632 222
Q ss_pred cc--cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 76 SY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 76 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
++ +.+|++++|+|.++.++.... ...+.+. ++|+++|+||+|+.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYL----TLQLLEL--GIPCIVALNMLDIA 125 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH--TCCEEEEEECHHHH
T ss_pred HHhhcCCCEEEEEecCCChHHHHHH----HHHHHhc--CCCEEEEEECccch
Confidence 22 689999999999986655443 3333332 79999999999963
No 129
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=6e-21 Score=125.82 Aligned_cols=120 Identities=11% Similarity=0.018 Sum_probs=73.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee---eeEEEECCeEEEEEEEeCCCcc--------cccccC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVVAEGTTVNLGLWDTAGQE--------DYNRLR 73 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~ 73 (127)
....++|+++|.+|+|||||+|++++........++.+.+. ......++ ..+.+|||||.. .+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 35689999999999999999999998876544333322221 22333444 568999999963 232222
Q ss_pred CCcc----cCCcEEEEEEeCCChHHHHHHHHHHHHHH-hhhCCCCCEEEEeecCCCCC
Q 033088 74 PLSY----RGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 ~~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..++ +.+|++++|+|+++........-.|+..+ .....+.|++|++||.|+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 2233 89999999999975322111112233322 22224789999999999864
No 130
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=125.72 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=75.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc--eeeee-eeEEEECCeEEEEEEEeCCCcc-----------cccc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--VFDNF-SANVVAEGTTVNLGLWDTAGQE-----------DYNR 71 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~D~~g~~-----------~~~~ 71 (127)
...+||+++|.+|+|||||+++|++..+.....++ .+... ......++ ..+.+|||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 46799999999999999999999998876554442 22221 22344454 468999999943 3444
Q ss_pred cCCCcccCCcEEEEEEeCCChHH--HHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 72 LRPLSYRGADVFVLAFSLVSRAS--YENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
....+++.+|++++|+|+++... ...+ ..+...+... ...|+++|+||+|+..
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~-~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGER-ARSFMILIFTRKDDLG 159 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHH-HGGGEEEEEECGGGC-
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhh-ccceEEEEEeCCccCC
Confidence 44455678899999999875433 1221 3333322221 2458999999999753
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=1.3e-21 Score=138.11 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=83.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcc----------cccccC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----------DYNRLR 73 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~ 73 (127)
...+||+++|.+|+|||||+|+|++..+. ..+..++.+.....+..++. .+.+|||||+. .|...+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35699999999999999999999987653 22233333333445556664 58999999983 333322
Q ss_pred C-CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 74 P-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
. .+++.+|++++|+|++++.+.+.. .|...+.. .+.|+++|+||+|+..
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVD 300 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCC
Confidence 2 367889999999999998888874 57777765 5799999999999864
No 132
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.84 E-value=2.5e-20 Score=123.42 Aligned_cols=119 Identities=14% Similarity=0.088 Sum_probs=74.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCC-CCCCCCCc-eeee-eeeEEEECCeEEEEEEEeCCCcccccccCC--------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPT-VFDN-FSANVVAEGTTVNLGLWDTAGQEDYNRLRP-------- 74 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------- 74 (127)
...++|+++|.+|+|||||+++|++.. +.....++ .+.. .......++ ..+.+|||||+..+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 457999999999999999999999876 44443343 2211 122333444 4699999999876543322
Q ss_pred ---CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEee-cCCCCC
Q 033088 75 ---LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT-KLGRGT 126 (127)
Q Consensus 75 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~n-K~Dl~~ 126 (127)
.+++.+|++++|+|+++..........|+..+.......|.++++| |+|+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 2568899999999998622222111233333322112345555555 999863
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.84 E-value=3.9e-21 Score=134.92 Aligned_cols=115 Identities=21% Similarity=0.206 Sum_probs=79.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCC-------
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL------- 75 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~------- 75 (127)
....++|+++|..++|||||+++|++..+.. ....++.......+...+. ..+.+|||||+.++......
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 4567999999999999999999999877632 2222222333444555543 37899999999887665433
Q ss_pred cccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+++.+|++++|+|++..+ ....|+..+.+. +.|+++|+||+|+..
T Consensus 110 ~l~~aD~vllVvD~~~~~----~~~~~l~~l~~~--~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTP----YEDDVVNLFKEM--EIPFVVVVNKIDVLG 154 (423)
T ss_dssp HHTSCSEEEEECSSSCCH----HHHHHHHHHHHT--TCCEEEECCCCTTTT
T ss_pred HHhcCCEEEEEEeCCChH----HHHHHHHHHHhc--CCCEEEEEeCcCCCC
Confidence 688999999999983332 226677777763 899999999999865
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=1.2e-20 Score=133.30 Aligned_cols=111 Identities=22% Similarity=0.190 Sum_probs=72.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCcee-eeeeeEEEECCeEEEEEEEeCCCcccc---------cccCCCcc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPLSY 77 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 77 (127)
.+|+++|.+|||||||+|+|.+.+.. ....+..+ +.....+..++. .+.+|||||.+.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 12222222 233344555654 5789999997642 33445678
Q ss_pred cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+++|++++|+|+.++.+... ..+...+++ .+.|+++|+||+|+.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENL 123 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSH
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCc
Confidence 99999999999987544333 222233333 368999999999974
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=1.9e-21 Score=137.30 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=73.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcc--------cccccCCCccc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYR 78 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~ 78 (127)
..+|+++|.+|+|||||+|+|.+..+... .++.+.+. ............+.+|||+|++ .+......+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999998765421 22222221 1112222223468999999985 45666677889
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++|++++|+|+.++.+... ..+...+++ .+.|+++|+||+|+..
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC--
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCcc
Confidence 9999999999988766544 345555554 5789999999999853
No 136
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.83 E-value=4e-20 Score=125.00 Aligned_cols=119 Identities=17% Similarity=0.095 Sum_probs=79.0
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCC-CCC-ceeeeeeeEEEECCeEEEEEEEeCCCcc---------cc
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIP-TVFDNFSANVVAEGTTVNLGLWDTAGQE---------DY 69 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~ 69 (127)
|+-+..+..+|+++|.+|+|||||+|++++..+... ..+ ++..........+ ...+.+|||||.. .+
T Consensus 1 ~~v~~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~ 78 (301)
T 1ega_A 1 MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLM 78 (301)
T ss_dssp ---CCCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHH
T ss_pred CCcccccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHH
Confidence 343455677899999999999999999998765321 111 1111111112222 3578999999987 34
Q ss_pred cccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
......+++.+|++++|+|.++ -+ .....+...+.. .+.|+++++||+|+..
T Consensus 79 ~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~--~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 79 NKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE--GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS--SSSCEEEEEESTTTCC
T ss_pred HHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh--cCCCEEEEEECcccCc
Confidence 5556778999999999999876 22 221233333433 5789999999999874
No 137
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.83 E-value=1.5e-20 Score=125.28 Aligned_cols=112 Identities=18% Similarity=0.049 Sum_probs=79.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccc------cCCCcc--
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSY-- 77 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-- 77 (127)
+.+||+++|++|||||||+++|.+..+.....++.+... ...+..++ ..+.+||+||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 368999999999999999999998876444444443333 22344454 3589999999987765 444555
Q ss_pred cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..+|++++|+|.++.+. . ..|...+.+. ...|+++++||+|+.
T Consensus 80 ~~~d~vi~v~D~~~~~~---~-~~~~~~~~~~-~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---N-LFLTLELFEM-EVKNIILVLNKFDLL 122 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---H-HHHHHHHHHT-TCCSEEEEEECHHHH
T ss_pred cCCcEEEEEecCCcchh---h-HHHHHHHHhc-CCCCEEEEEEChhcC
Confidence 68999999999988642 2 2333344332 239999999999963
No 138
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=5.7e-21 Score=131.47 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=60.9
Q ss_pred eEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCC----------ChHHHHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 033088 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHY--SPGVPVVLVGTK 121 (127)
Q Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK 121 (127)
..+.+++||++|++.++.+|..++++++++|+|||++ +..++.++ ..|+..+.+. .+++|++||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence 5689999999999999999999999999999999998 78899998 7777776653 378999999999
Q ss_pred CCCC
Q 033088 122 LGRG 125 (127)
Q Consensus 122 ~Dl~ 125 (127)
+|+.
T Consensus 260 ~DL~ 263 (354)
T 2xtz_A 260 FDIF 263 (354)
T ss_dssp HHHH
T ss_pred cchh
Confidence 9973
No 139
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=1.9e-20 Score=128.01 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=60.3
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCC----------ChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 122 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~ 122 (127)
.+.+++||++|++.++..|..|+++++++|+|||++ +..++.+. ..|+..+.+. ..++|++|++||+
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEECc
Confidence 478999999999999999999999999999999998 77888888 5566555443 2789999999999
Q ss_pred CCC
Q 033088 123 GRG 125 (127)
Q Consensus 123 Dl~ 125 (127)
|+.
T Consensus 239 DL~ 241 (340)
T 4fid_A 239 DLF 241 (340)
T ss_dssp HHH
T ss_pred hhh
Confidence 974
No 140
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.82 E-value=7.3e-22 Score=141.85 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=87.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
++..+|+++|..++|||||+++|.+..+.....++.+..+. ..+..++ ...+.+|||||++.|..++..+++.+|+++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 35689999999999999999999977665444444433332 2222211 236889999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|+|+++....+.. + ++..+.. .++|+++++||+|+..
T Consensus 81 LVVDa~dg~~~qt~-e-~l~~~~~--~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 81 LVVAADDGVMKQTV-E-SIQHAKD--AHVPIVLAINKCDKAE 118 (537)
T ss_dssp EECBSSSCCCHHHH-H-HHHHHHT--TTCCEEECCBSGGGTT
T ss_pred EEEECCCCccHHHH-H-HHHHHHH--cCCcEEEEEecccccc
Confidence 99999987666654 3 3333433 4789999999999863
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=2e-20 Score=132.64 Aligned_cols=115 Identities=19% Similarity=0.227 Sum_probs=82.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCC-C-CCCCCceeeeeeeEEEECCeEEEEEEEeCCC----------cccccccC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-P-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAG----------QEDYNRLR 73 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 73 (127)
...+||+++|.+++|||||+++|.+... . ..+..++.+.....+..++. .+.+||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4679999999999999999999997642 2 22233333333445566664 789999999 56665554
Q ss_pred C-CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 74 P-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
. .+++.+|++++|+|+++..+.+. ..|...+.+ .+.|+++|+||+|+..
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVD 320 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSC
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCC
Confidence 4 36789999999999987644443 566666665 5799999999999864
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.81 E-value=5.3e-20 Score=130.50 Aligned_cols=112 Identities=22% Similarity=0.304 Sum_probs=74.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccC--------CCc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 76 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 76 (127)
..+||+++|.+|+|||||+|+|++..+. .....++.+.....+..++ ..+.+|||||..++.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4689999999999999999999986432 2222233333344556666 467999999986654332 336
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++.+|++++|+|.+++.+... ..|+..+.. .|+++|+||+|+..
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~~----~piivV~NK~Dl~~ 344 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVKH----RPLILVMNKIDLVE 344 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHTT----SCEEEEEECTTSSC
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhccC----CcEEEEEECCCCCc
Confidence 789999999999998766555 566666643 69999999999864
No 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.81 E-value=3.5e-20 Score=131.97 Aligned_cols=111 Identities=24% Similarity=0.257 Sum_probs=81.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcc-ccccc--------CCCc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-DYNRL--------RPLS 76 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~--------~~~~ 76 (127)
.++|+++|.+|+|||||+|+|.+..+ ...+..|+.+.....+.+++ ..+.+|||||.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999998753 23333344334445566665 468999999987 65432 1345
Q ss_pred ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++.+|++++|+|++++.+++.. .+++.+ .+.|+++|+||+|+..
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCC
T ss_pred hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECccccc
Confidence 7899999999999988776653 333444 4789999999999864
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=8.7e-21 Score=134.52 Aligned_cols=115 Identities=19% Similarity=0.139 Sum_probs=76.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCC--------cccccccCCCcc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAG--------QEDYNRLRPLSY 77 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~~ 77 (127)
...+|+++|.+|||||||+|+|.+..+... ..+.+.+. ............+.+||||| ++.+......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 357999999999999999999998765422 12222222 22223333345799999999 667777777888
Q ss_pred cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.+|++++|+|..+...... ..+.+.+++ .+.|+++|+||+|+..
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC----
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchh
Confidence 99999999999876433333 345555555 6899999999999753
No 145
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.81 E-value=3.5e-20 Score=127.52 Aligned_cols=70 Identities=11% Similarity=0.189 Sum_probs=61.2
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCC----------hHHHHHHHHHHHHHHhhh--CCCCCEEEEeecC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKL 122 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~ 122 (127)
.+.+++||++|++.++..|..++++++++|+|||+++ ..++.+. ..|+..+.+. ..++|++|++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECc
Confidence 4789999999999999999999999999999999998 5678887 6777776653 3789999999999
Q ss_pred CCC
Q 033088 123 GRG 125 (127)
Q Consensus 123 Dl~ 125 (127)
|+.
T Consensus 271 DL~ 273 (353)
T 1cip_A 271 DLF 273 (353)
T ss_dssp HHH
T ss_pred Cch
Confidence 973
No 146
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.80 E-value=2.1e-20 Score=128.23 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=83.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCceeeeeeeEEEECCeEEEEEEEeCCCccc----ccccCCCccc---CC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLSYR---GA 80 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~~---~~ 80 (127)
.+|+++|.+++|||||++++.+.+... .+..++.......+..++ ...+.+||+||... +..+...|++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 368899999999999999999875432 222122111112233333 14689999999643 3344455554 49
Q ss_pred cEEEEEEeCCC---hHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCCC
Q 033088 81 DVFVLAFSLVS---RASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 81 ~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~~ 126 (127)
+++++|+|+++ +.++..+ ..|..++.... .+.|+++|+||+|+..
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred cEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 99999999998 7888887 88998888764 4799999999999864
No 147
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.80 E-value=3.1e-19 Score=129.73 Aligned_cols=118 Identities=13% Similarity=0.131 Sum_probs=84.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcC--CCCC-----CCCCc------eeeee---eeEEEE---CCeEEEEEEEeCCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----DYIPT------VFDNF---SANVVA---EGTTVNLGLWDTAG 65 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~--~~~~-----~~~~~------~~~~~---~~~~~~---~~~~~~~~~~D~~g 65 (127)
..+..+|+++|..++|||||+++|+.. .... ....+ .+.+. ...+.. ++..+.+++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 356789999999999999999999752 1111 00010 11111 011111 45568999999999
Q ss_pred cccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.+|......+++.+|++++|+|+++..+.+.. ..|..... .++|+++++||+|+..
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPS 139 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTT
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccc
Confidence 999988888889999999999999998888876 77776654 4789999999999864
No 148
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.80 E-value=2.8e-19 Score=121.77 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=58.9
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCC----------ChHHHHHHHHHHHHHHhhh--CCCCCEEEEeecC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 122 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~ 122 (127)
.+.+++||++|++.++..|..|+++++++|+|||++ +..++.+. ..|+..+.+. ..++|++|++||+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECc
Confidence 378999999999999999999999999999999664 66778887 5566665543 2689999999999
Q ss_pred CCC
Q 033088 123 GRG 125 (127)
Q Consensus 123 Dl~ 125 (127)
|+.
T Consensus 245 DL~ 247 (327)
T 3ohm_A 245 DLL 247 (327)
T ss_dssp HHH
T ss_pred hhh
Confidence 974
No 149
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.80 E-value=2e-19 Score=125.83 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=85.8
Q ss_pred CCCcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCC---ceeeee----eeEE---------EE---CCeEEEEEEEeC
Q 033088 3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP---TVFDNF----SANV---------VA---EGTTVNLGLWDT 63 (127)
Q Consensus 3 ~~~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~---~~~~~~----~~~~---------~~---~~~~~~~~~~D~ 63 (127)
+.....+||+++|..++|||||+++|.+......... +.+... .... .. ......+.+|||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 4456789999999999999999999987543221100 000000 0000 00 112368999999
Q ss_pred CCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
||+++|.......+..+|++++|+|+++..+.... .+|+..+.... ..|+++++||+|+..
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVS 143 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSC
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccc
Confidence 99999999888889999999999999987655555 66666665532 358999999999864
No 150
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.80 E-value=4.5e-19 Score=122.34 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=82.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCccccccc---------CCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL---------RPL 75 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~---------~~~ 75 (127)
...++++++|.+|+|||||++++.+........+...... ......+ ...+.+|||||....... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4678999999999999999999998764322111111111 1122222 357899999998543211 112
Q ss_pred cccCCcEEEEEEeCCChH--HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 76 SYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+...+|++++|+|+++.. ++... ..|+..+....++.|+++|+||+|+..
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 345799999999998876 66765 788888877655899999999999864
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.80 E-value=8.6e-20 Score=121.84 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=72.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCC-CCC-------CCceeeeee-eEEEECCeEEEEEEEeCCCcccc------
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDY-------IPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDY------ 69 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~-~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~------ 69 (127)
....++|+++|.+|+|||||+|+++..... ..+ .+|.+.... ..+..++..+.+.+|||||..+.
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 345799999999999999999998765443 333 344433332 23333555578999999997322
Q ss_pred -cccC-------CCcc-------------cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 70 -NRLR-------PLSY-------------RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 70 -~~~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+. ..++ ..+|+++++++.+... +......+++.+.. ++|+++|+||+|+..
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE---KVNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT---TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc---cCCEEEEEeccCCCC
Confidence 1111 1111 2377999998766532 22222456666665 799999999999753
No 152
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.79 E-value=2.1e-19 Score=130.67 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=81.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCC--CCC-----CCCC------ceeeeee---eEEEE---CCeEEEEEEEeCCCcc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNK--FPT-----DYIP------TVFDNFS---ANVVA---EGTTVNLGLWDTAGQE 67 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~--~~~-----~~~~------~~~~~~~---~~~~~---~~~~~~~~~~D~~g~~ 67 (127)
+..+|+++|..++|||||+++|+... ... .... ..+.+.. ..+.. ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 57899999999999999999998632 111 1111 1111111 11111 4557899999999999
Q ss_pred cccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|......+++.+|++|+|+|+++..+.+.. ..|...... ++|+++++||+|+..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPA 137 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCccc
Confidence 9998888899999999999999998777776 777766653 789999999999864
No 153
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.79 E-value=3.7e-19 Score=128.03 Aligned_cols=117 Identities=13% Similarity=0.084 Sum_probs=80.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCC------------C--------CCceeeee-eeEEEECCeEEEEEEEeCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD------------Y--------IPTVFDNF-SANVVAEGTTVNLGLWDTA 64 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~------------~--------~~~~~~~~-~~~~~~~~~~~~~~~~D~~ 64 (127)
.+..+|+++|..++|||||+++|+...-... . ....+.+. .....+......+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4689999999999999999999986311100 0 00111111 1111222234679999999
Q ss_pred CcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|+.+|......+++.+|++|+|+|+++....+. ..+...+.. .++|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence 999998878888999999999999988644333 344444443 4789999999999864
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.79 E-value=2e-20 Score=134.58 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=82.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCC--------------C---CCCC---ceeeee-eeEEEECCeEEEEEEEeCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--------------T---DYIP---TVFDNF-SANVVAEGTTVNLGLWDTA 64 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~--------------~---~~~~---~~~~~~-~~~~~~~~~~~~~~~~D~~ 64 (127)
.+..+|+++|.+++|||||+++|+..... . .+.+ ..+.+. ............+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 46789999999999999999999621110 0 0000 001111 1112222224679999999
Q ss_pred CcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
|+.+|......+++.+|++|+|+|+++..+.+.. ..| ..+.. .++|+++|+||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~--~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRL--RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHT--TTCCEEEEEECTTSCC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEeCCCCcc
Confidence 9999999888999999999999999987777764 444 44443 4789999999999864
No 155
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.78 E-value=8.2e-20 Score=126.19 Aligned_cols=117 Identities=16% Similarity=0.216 Sum_probs=65.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCC-CCCCCC--------Cceeeee-eeEEEECCeEEEEEEEeCCCc-------ccc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYI--------PTVFDNF-SANVVAEGTTVNLGLWDTAGQ-------EDY 69 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~-~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~D~~g~-------~~~ 69 (127)
..++|+++|++|+|||||+++++... +...+. ++.+... ...+..++..+.+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999976543 332222 3333222 222333556678999999998 555
Q ss_pred cccCC-------CcccCCc-----------EEEEEEeCCC-hHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 70 NRLRP-------LSYRGAD-----------VFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 70 ~~~~~-------~~~~~~~-----------~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+.. .++++++ +.+++|++++ ..++..+...|++.+. .++|+++|+||+|+..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLT 188 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCC
Confidence 55554 4443332 2235555544 4555555345666653 5799999999999864
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.78 E-value=1.3e-18 Score=122.83 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=78.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCC--C-----------------------------CCCCCceeeeeeeEEEECC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKF--P-----------------------------TDYIPTVFDNFSANVVAEG 53 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 53 (127)
....++|+++|..++|||||+++|+...- . .+..+..+..... ..+..
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~-~~~~~ 92 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGR-AYFET 92 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeE-EEEec
Confidence 34679999999999999999999954311 0 0111111111111 11222
Q ss_pred eEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHH---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCCC
Q 033088 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y---ENVLKKWIPELQHYSPGVP-VVLVGTKLGRG 125 (127)
Q Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~ 125 (127)
....+.+|||||+++|.......++.+|++++|+|+++... + ... .+.+..+.. .++| +++++||+|+.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~--~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKT--AGVKHLIVLINKMDDP 168 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHH--cCCCeEEEEeecCCCc
Confidence 23589999999999999888888999999999999987642 1 111 222333332 3566 99999999984
No 157
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.78 E-value=9.1e-20 Score=130.12 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=81.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 84 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 84 (127)
.+..+|+++|..++|||||+++|.+..+.....+..+.+. ...+..++ ..+.+|||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4678999999999999999999987655433222221111 11222233 36889999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|+|+++....+.. +.| ..+.. .++|+++++||+|+..
T Consensus 80 LVVda~~g~~~qT~-e~l-~~~~~--~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 80 LVVAADDGVMPQTI-EAI-QHAKA--AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp EEEETTTBSCTTTH-HHH-HHHHH--TTCCEEEEEECSSSST
T ss_pred EEeecccCccHHHH-HHH-HHHHh--cCceEEEEEEeccccc
Confidence 99999875333332 222 22332 4789999999999863
No 158
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.78 E-value=9.3e-19 Score=127.31 Aligned_cols=113 Identities=20% Similarity=0.158 Sum_probs=79.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCC----CCCceeeeeeeEE-------------EECCeEEEEEEEeCCCccc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD----YIPTVFDNFSANV-------------VAEGTTVNLGLWDTAGQED 68 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~~~D~~g~~~ 68 (127)
.+..+|+++|..++|||||+++|++..+... ..++.+..+.... ..+.....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3578999999999999999999987644321 1112221111000 0001112589999999999
Q ss_pred ccccCCCcccCCcEEEEEEeCCC---hHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
|..++..+++.+|++|+|+|+++ ++++..+ . .+.. .++|+++++||+|+.
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRI 135 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGS
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEecccccc
Confidence 99999999999999999999998 5555443 2 2223 579999999999985
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.78 E-value=3.4e-19 Score=127.21 Aligned_cols=120 Identities=12% Similarity=0.039 Sum_probs=76.8
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCC--CCC---------------------------CCCceeeee-eeEEEECCeE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTD---------------------------YIPTVFDNF-SANVVAEGTT 55 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~--~~~---------------------------~~~~~~~~~-~~~~~~~~~~ 55 (127)
...+||+++|..++|||||+++|+.... ... .....+.+. .....++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3579999999999999999999975411 000 000001111 1112233334
Q ss_pred EEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-----VLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+.+|||||+++|......+++.+|++|+|+|+++..+... ...+.+..+.. ....|+++|+||+|+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCccc
Confidence 679999999999999988889999999999999998654321 11222222222 23356999999999864
No 160
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=1.3e-18 Score=122.90 Aligned_cols=115 Identities=22% Similarity=0.233 Sum_probs=75.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccC----------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR---------- 73 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~---------- 73 (127)
...+|++++|++|||||||++++++.... .....++.+.....+..++. .+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 35689999999999999999999987642 22222222233345566765 57899999975433221
Q ss_pred --CCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 74 --PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 74 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+++.+|++++|+|.++..+.+. ..+...+.. .+.|+++++||+|+..
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~--~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQD--QRMAGLMER--RGRASVVVFNKWDLVV 306 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGST
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCC
Confidence 124567999999999987665554 234444444 5789999999999853
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.77 E-value=3.9e-18 Score=117.88 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=76.9
Q ss_pred eeE-EEEECCCCCcHHHHHHHHhcCCCCCCCCC-ceeeeeeeEEEECCeEEEEEEEeCCCccc---------ccccCCCc
Q 033088 8 FIK-CVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLS 76 (127)
Q Consensus 8 ~~k-i~iiG~~~~GKssl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~ 76 (127)
.++ |+++|.+|+|||||++++.+........+ ++-+.....+.+++ ..+.+|||+|... +..... .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-E 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence 345 99999999999999999998765332222 22222344566666 4678999999621 222222 4
Q ss_pred ccCCcEEEEEEeCCChH--HHHHHHHHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 77 YRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 77 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
+..+|++++|+|++++. ..... ..|...+.... .+.|+++|+||+|+..
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred HHhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 68899999999998876 44444 56666665543 6789999999999854
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.77 E-value=4.6e-19 Score=124.06 Aligned_cols=117 Identities=19% Similarity=0.135 Sum_probs=82.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcC--------CCCCC--CC-----Cceeeee-eeEEEECCeEEEEEEEeCCCccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--------KFPTD--YI-----PTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~--------~~~~~--~~-----~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~ 68 (127)
....++|+++|..++|||||+++|.+. .+... .. ...+.+. .....++.....+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 446799999999999999999999873 22110 00 0111111 11223333345789999999999
Q ss_pred ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCC
Q 033088 69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRG 125 (127)
Q Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~ 125 (127)
|......+++.+|++|+|+|+++....+. .+|+..+.. .++| +++++||+|+.
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~--~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFMNKVDMV 141 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHH--TTCCCEEEEEECGGGC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEECcccc
Confidence 98887888999999999999988755444 455565555 4678 89999999986
No 163
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=9.9e-18 Score=117.43 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=77.0
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcC---CCCCCCCC--ceeeeeee-EEEE-------------C--C----eEEEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSN---KFPTDYIP--TVFDNFSA-NVVA-------------E--G----TTVNL 58 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~---~~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~ 58 (127)
.....++|+++|..++|||||+++|.+. .+.++..+ |....+.. .... + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 3456799999999999999999999843 33333333 33322221 1111 1 1 13689
Q ss_pred EEEeCCCcccccccCCCcccCCcEEEEEEeCCCh----HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 59 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 59 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+||+||+++|.......+..+|++++|+|+++. ++...+ . .+.. ....|+++++||+|+..
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~-l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-M----ALEI-LGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-H----HHHH-TTCCCEEEEEECTTSSC
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-H----HHHH-cCCCeEEEEEEccCCCC
Confidence 9999999999988777778889999999999854 333333 2 2222 12357999999999864
No 164
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.77 E-value=1.4e-18 Score=124.03 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=78.7
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcCC-------CCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCCC
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPL 75 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 75 (127)
...+.++|+++|..++|||||+++|.+.. +..+..+..+... ...+..++ ..+.+|||||+++|......
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 33467999999999999999999999765 2222222111111 11233344 57999999999999888788
Q ss_pred cccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+..+|++++|+|+++...-+. .+++..+.. .++|+++++||+|+..
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt--~e~l~~~~~--~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQT--GEHMLILDH--FNIPIIVVITKSDNAG 139 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCBCEEEECTTSSC
T ss_pred HHhhCCEEEEEEecCCCccHHH--HHHHHHHHH--cCCCEEEEEECCCccc
Confidence 8899999999999987322222 222223333 3688899999999864
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.77 E-value=7.5e-20 Score=129.11 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=79.6
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcC--CCCCCC-------------------------------CCceeeeeeeEEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDY-------------------------------IPTVFDNFSANVV 50 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~--~~~~~~-------------------------------~~~~~~~~~~~~~ 50 (127)
.....+||+++|..++|||||+++|+.. .+.... ..|....+ ..
T Consensus 2 ~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~---~~ 78 (435)
T 1jny_A 2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF---MR 78 (435)
T ss_dssp --CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC--------------CE
T ss_pred CCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE---EE
Confidence 3456799999999999999999999864 332110 01111111 11
Q ss_pred ECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhC-----CCC-CEEEEeecCCC
Q 033088 51 AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGV-PVVLVGTKLGR 124 (127)
Q Consensus 51 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~-p~~lv~nK~Dl 124 (127)
++.....+.+|||||+++|......+++.+|++|+|+|+++ .++++. ..|..+.+++. .++ |+++++||+|+
T Consensus 79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~-~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 156 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAG-MSVEGQTREHIILAKTMGLDQLIVAVNKMDL 156 (435)
T ss_dssp EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHH-HSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccc-cccchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence 22233579999999999998888888999999999999998 666654 33333322211 244 69999999998
Q ss_pred CC
Q 033088 125 GT 126 (127)
Q Consensus 125 ~~ 126 (127)
.+
T Consensus 157 ~~ 158 (435)
T 1jny_A 157 TE 158 (435)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.76 E-value=2.5e-18 Score=121.35 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=78.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCC--CCC----------CCCceeeee-------------------e-eEEEECC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTD----------YIPTVFDNF-------------------S-ANVVAEG 53 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~--~~~----------~~~~~~~~~-------------------~-~~~~~~~ 53 (127)
...+||+++|..++|||||+++|++... ... ...+.+..+ . .......
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4569999999999999999999986531 110 011111000 0 0111222
Q ss_pred eEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCC-CEEEEeecCCCCC
Q 033088 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-PVVLVGTKLGRGT 126 (127)
Q Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~~lv~nK~Dl~~ 126 (127)
....+.+|||||+++|......+++.+|++++|+|+++....+. .+++..+... ++ |+++|+||+|+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 33579999999999998877788999999999999988654333 3444444432 44 5999999999864
No 167
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.76 E-value=1.1e-18 Score=131.19 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=85.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCC------------CCC----CCC--Cceeeeee-eEEE------------ECC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNK------------FPT----DYI--PTVFDNFS-ANVV------------AEG 53 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~------------~~~----~~~--~~~~~~~~-~~~~------------~~~ 53 (127)
..+..||+++|..++|||||+++|+... +.+ +.. .|+..... .... .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998641 110 000 11111111 1111 234
Q ss_pred eEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..+.+++|||||+.+|......+++.+|++|+|+|+++..+++.. ..|..... .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcc
Confidence 478899999999999999999999999999999999998888875 56655443 479999999999974
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.76 E-value=1.8e-18 Score=116.26 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=77.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCC------CCcee--------------------eeee-------------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY------IPTVF--------------------DNFS------------- 46 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~------~~~~~--------------------~~~~------------- 46 (127)
...++|+++|.+|+|||||+|+|++..+.+.. .|+.. .+..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35689999999999999999999998874321 12100 0000
Q ss_pred -----------eEEEE-CCeEEEEEEEeCCCcc-------------cccccCCCcccCCcEEE-EEEeCCChHHHHHHHH
Q 033088 47 -----------ANVVA-EGTTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFV-LAFSLVSRASYENVLK 100 (127)
Q Consensus 47 -----------~~~~~-~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 100 (127)
..+.+ ......+.+|||||.. .+..+...+++.++.++ +|+|+++..+.... .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-H
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-H
Confidence 00000 0012579999999964 23445556778888776 79999876544443 3
Q ss_pred HHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 101 KWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 101 ~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.|...+.. .+.|+++|+||+|+..
T Consensus 183 ~~~~~~~~--~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 183 KIAKEVDP--QGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHHCT--TCSSEEEEEECGGGSC
T ss_pred HHHHHhCC--CCCeEEEEEEccccCC
Confidence 56666654 5789999999999864
No 169
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=8.1e-19 Score=129.68 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=83.6
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcC--CCC------C------------CCCCceeeeeeeEEEECCeEEEEEEEeC
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFP------T------------DYIPTVFDNFSANVVAEGTTVNLGLWDT 63 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~--~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 63 (127)
...+..+|+++|..++|||||+++|+.. .+. . ....|.... ...+..+ ...+++|||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDT 84 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDT 84 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEEC
Confidence 3467899999999999999999999842 110 0 011111111 1122222 367999999
Q ss_pred CCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
||+.+|......+++.+|++|+|+|+++..+.+.. ..|.. +.. .++|+++++||+|+..
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEK--YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHH--cCCCEEEEEECCCccc
Confidence 99999988888899999999999999988777775 55554 333 4799999999999864
No 170
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.75 E-value=2.4e-18 Score=120.19 Aligned_cols=115 Identities=18% Similarity=0.090 Sum_probs=79.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC-------CCCCC--CCC-----ceeeee-eeEEEECCeEEEEEEEeCCCcccccc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN-------KFPTD--YIP-----TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 71 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~-------~~~~~--~~~-----~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~ 71 (127)
..+||+++|..++|||||+++|.+. .+... ... ..+.+. .....+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999863 11100 000 000111 01122333345789999999999888
Q ss_pred cCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCC
Q 033088 72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRG 125 (127)
Q Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~ 125 (127)
....+++.+|++|+|+|+++....+.. +.| ..+.. .++| +++++||+|+.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~--~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQ--IGVEHVVVYVNKADAV 132 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHH--TTCCCEEEEEECGGGC
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHH--cCCCeEEEEEECcccC
Confidence 777889999999999999986555443 333 44443 4688 78999999986
No 171
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.74 E-value=1.1e-17 Score=117.21 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=78.3
Q ss_pred CCcceeEEEEECCCCCcHHHHHHHHhcC---CCCCCCCC--ceeeeeee-EEEE-------------C--C----eEEEE
Q 033088 4 SASRFIKCVTVGDGAVGKTCMLICYTSN---KFPTDYIP--TVFDNFSA-NVVA-------------E--G----TTVNL 58 (127)
Q Consensus 4 ~~~~~~ki~iiG~~~~GKssl~~~l~~~---~~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~ 58 (127)
.....++|+++|..++|||||+++|.+. .+.++..+ |....+.. .... . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3456799999999999999999999843 23333223 33222221 1111 0 1 13689
Q ss_pred EEEeCCCcccccccCCCcccCCcEEEEEEeCCCh----HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 59 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 59 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+|||||+++|.......+..+|++++|+|+++. ++...+ . .+... ...|+++++||+|+..
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~~-~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-M----ALQII-GQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-H----HHHHH-TCCCEEEEEECGGGSC
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-H----HHHHc-CCCcEEEEEECccCCC
Confidence 9999999999887766777889999999999864 333332 2 22221 2357999999999864
No 172
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=4.3e-18 Score=125.90 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=82.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc--CCCCCC---CC-Cce----------eeee---eeEEEECCeEEEEEEEeCCC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPTD---YI-PTV----------FDNF---SANVVAEGTTVNLGLWDTAG 65 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~--~~~~~~---~~-~~~----------~~~~---~~~~~~~~~~~~~~~~D~~g 65 (127)
..+..+|+++|.+++|||||+++|+. +.+... .. .+. +.+. ...+..+ ...+++|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence 45789999999999999999999985 222100 00 000 0001 1122233 36799999999
Q ss_pred cccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.+|......+++.+|++++|+|+++..+.+.. ..|.. +.. .++|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~--~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATT--YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEECCCccc
Confidence 999988888899999999999999987777764 55543 443 4799999999999864
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.74 E-value=9.5e-18 Score=119.05 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=78.1
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC--CCCCC-------------------------------CCCceeeeeeeEEEEC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD-------------------------------YIPTVFDNFSANVVAE 52 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~--~~~~~-------------------------------~~~~~~~~~~~~~~~~ 52 (127)
...++|+++|..++|||||+++|+.. .+... ...|....+ ..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~---~~~~ 81 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL---WKFE 81 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC---EEEE
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE---EEEe
Confidence 46799999999999999999999864 22110 001111111 1223
Q ss_pred CeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChH---HH----HHHHHHHHHHHhhhCCCCC-EEEEeecCCC
Q 033088 53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SY----ENVLKKWIPELQHYSPGVP-VVLVGTKLGR 124 (127)
Q Consensus 53 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl 124 (127)
.....+.+|||||+++|......++..+|++|+|+|+++.. +| +. .+++..+.. .++| +++++||+|+
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt--~~~~~~~~~--~~v~~iivviNK~Dl 157 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT--REHALLAFT--LGVRQLIVAVNKMDS 157 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH--HHHHHHHHH--TTCCEEEEEEECGGG
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH--HHHHHHHHH--cCCCeEEEEEEcccc
Confidence 33467999999999999888888899999999999998763 22 33 223333333 3566 9999999998
Q ss_pred C
Q 033088 125 G 125 (127)
Q Consensus 125 ~ 125 (127)
.
T Consensus 158 ~ 158 (458)
T 1f60_A 158 V 158 (458)
T ss_dssp G
T ss_pred c
Confidence 5
No 174
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.74 E-value=2.5e-18 Score=116.49 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=74.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCC------Cceeeeeee--------------------------------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI------PTVFDNFSA-------------------------------- 47 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~------~~~~~~~~~-------------------------------- 47 (127)
....+|+++|.+|+|||||+|+|++..+.+... ++.......
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 356799999999999999999999887633211 100000000
Q ss_pred ------EE--------------E-ECCeEEEEEEEeCCCccc-------------ccccCCCcccCCcEEEEEEeCCChH
Q 033088 48 ------NV--------------V-AEGTTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLVSRA 93 (127)
Q Consensus 48 ------~~--------------~-~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~ 93 (127)
.+ . .......+.+|||||... +......+++.+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 0 011124689999999753 3445566788999999999975432
Q ss_pred -HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 94 -SYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 94 -s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..... ..+...+.. .+.|+++|+||+|+..
T Consensus 182 ~~~~~~-~~i~~~~~~--~~~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 182 LANSDA-LQLAKEVDP--EGKRTIGVITKLDLMD 212 (315)
T ss_dssp STTCSH-HHHHHHHCS--SCSSEEEEEECTTSSC
T ss_pred hhhhHH-HHHHHHhCC--CCCcEEEEEcCcccCC
Confidence 11111 244444444 4789999999999864
No 175
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.74 E-value=2.2e-18 Score=122.53 Aligned_cols=116 Identities=19% Similarity=0.139 Sum_probs=66.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc--CCCCC-------------------------------CCCCceeeeeeeEEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT-------------------------------DYIPTVFDNFSANVVA 51 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~--~~~~~-------------------------------~~~~~~~~~~~~~~~~ 51 (127)
....++|+++|..++|||||+++|+. +.+.. ....|....+ ..+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~-~~~~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR-AYFET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C-CEEEC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee-EEEec
Confidence 34678999999999999999999974 22210 0001111111 11222
Q ss_pred CCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChH---HHHHH--HHHHHHHHhhhCCCCC-EEEEeecCCCC
Q 033088 52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVP-VVLVGTKLGRG 125 (127)
Q Consensus 52 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p-~~lv~nK~Dl~ 125 (127)
+ ...+.+|||||+++|.......+..+|++|+|+|+++.. +|... ..+.+..+.. .++| +++++||+|+.
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEP 194 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTST
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCC
Confidence 3 357899999999999988888899999999999999863 22211 0122222222 4677 99999999985
No 176
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.73 E-value=2.4e-18 Score=124.41 Aligned_cols=117 Identities=16% Similarity=0.128 Sum_probs=79.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCC---CCCCCceeeeeeeEEE-------EC-----------------------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSANVV-------AE----------------------- 52 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~---~~~~~~~~~~~~~~~~-------~~----------------------- 52 (127)
....+|+++|.+|+|||||+|+|++..+. ....+++. ....... .+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~-~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD-CFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC-SEEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc-eEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 45789999999999999999999998763 22222221 1000000 00
Q ss_pred CeE---------EEEEEEeCCCccc-----------ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCC
Q 033088 53 GTT---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG 112 (127)
Q Consensus 53 ~~~---------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 112 (127)
+.. ..+.+|||||... +......+++.+|++++|+|+++....... ..|+..+.. .+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRG--HE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTT--CG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHh--cC
Confidence 000 2588999999864 334445567889999999999875433443 667777765 35
Q ss_pred CCEEEEeecCCCCC
Q 033088 113 VPVVLVGTKLGRGT 126 (127)
Q Consensus 113 ~p~~lv~nK~Dl~~ 126 (127)
.|+++|+||+|+..
T Consensus 219 ~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 219 DKIRVVLNKADMVE 232 (550)
T ss_dssp GGEEEEEECGGGSC
T ss_pred CCEEEEEECCCccC
Confidence 78999999999864
No 177
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.73 E-value=2.6e-17 Score=121.91 Aligned_cols=117 Identities=16% Similarity=0.072 Sum_probs=83.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcC--CCCCC------------------CCCceeeeeeeEEEE-----CCeEEEEE
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------------YIPTVFDNFSANVVA-----EGTTVNLG 59 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~--~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~ 59 (127)
..+..+|+++|..++|||||+++|+.. .+... ...|..... ..+.. ++..+.++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA-TTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece-EEEEECCccccCCceeEE
Confidence 456899999999999999999999753 11110 001111110 11222 22347899
Q ss_pred EEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 60 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+|||||+.+|......+++.+|++|+|+|+++..+.+.. ..|.. +.. .++|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQ-ANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEeCCCccc
Confidence 999999999988888899999999999999987666654 44433 333 4799999999999864
No 178
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.8e-18 Score=122.68 Aligned_cols=119 Identities=12% Similarity=0.076 Sum_probs=77.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCC-------------------C----------ceeeee-eeEEEECCeE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-------------------P----------TVFDNF-SANVVAEGTT 55 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~-------------------~----------~~~~~~-~~~~~~~~~~ 55 (127)
...+||+++|.+++|||||+++|+.....-... . ..+.+. .....+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999998653221100 0 001111 0111122223
Q ss_pred EEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHH---H---HHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y---ENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..+.+|||||+++|......+++.+|++|+|+|+++... + ... ...+..+.. ....|++||+||+|+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~-lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASS-LGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHT-TTCCEEEEEEECTTTTT
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHH-cCCCeEEEEEecccccc
Confidence 578999999999999988889999999999999987421 0 111 222222222 12235999999999864
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.72 E-value=3.3e-17 Score=121.22 Aligned_cols=116 Identities=12% Similarity=0.179 Sum_probs=80.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCcee----eee----eeEEEE-CCe----------------------
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVF----DNF----SANVVA-EGT---------------------- 54 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~~~~----~~~----~~~~~~-~~~---------------------- 54 (127)
..++|+++|.+|+|||||+|+|++....+. ..+++. ..+ ...... ++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 578999999999999999999998765432 222221 000 001111 000
Q ss_pred -----------------------E--EEEEEEeCCCccc---ccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHH
Q 033088 55 -----------------------T--VNLGLWDTAGQED---YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL 106 (127)
Q Consensus 55 -----------------------~--~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 106 (127)
. ..+.+|||||... .......+++.+|++++|+|.++..+.... ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0 2589999999654 334556678999999999999988777775 6666666
Q ss_pred hhhCCCCCEEEEeecCCCC
Q 033088 107 QHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 107 ~~~~~~~p~~lv~nK~Dl~ 125 (127)
.. .+.|+++|+||+|+.
T Consensus 227 ~~--~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 227 KG--RGLTVFFLVNAWDQV 243 (695)
T ss_dssp TT--SCCCEEEEEECGGGG
T ss_pred Hh--hCCCEEEEEECcccc
Confidence 54 367899999999974
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.72 E-value=1e-17 Score=115.62 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=75.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceee-----e----------ee-------------------------
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-----N----------FS------------------------- 46 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~-----~----------~~------------------------- 46 (127)
...+|+++|++|||||||+++|.+..+.+....+... . +.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 3459999999999999999999998774432221110 0 00
Q ss_pred -------------eEEEE-CCeEEEEEEEeCCCcccc-------------cccCCCcccCCcEEEEEEeCCChHHHHHHH
Q 033088 47 -------------ANVVA-EGTTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLVSRASYENVL 99 (127)
Q Consensus 47 -------------~~~~~-~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 99 (127)
....+ ......+.+|||||...+ ..+...+++++|++|+|++.++.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---
Confidence 00000 011235889999998776 445667789999999999876543221
Q ss_pred HHHHHHHhhhC-CCCCEEEEeecCCCCC
Q 033088 100 KKWIPELQHYS-PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 100 ~~~~~~~~~~~-~~~p~~lv~nK~Dl~~ 126 (127)
..|+..+.... .+.|+++|+||+|+..
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~ 217 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMD 217 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCC
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCC
Confidence 23333333332 4689999999999864
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.70 E-value=1.4e-17 Score=127.37 Aligned_cols=118 Identities=16% Similarity=0.110 Sum_probs=80.3
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcC-------CCCC-------CCCCceeeeee-eEEEECCeEEEEEEEeCCCcccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSN-------KFPT-------DYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~-------~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~ 69 (127)
....++|+++|..++|||||+++|.+. .+.. ....+.+.+.. ....++.....+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 345799999999999999999999863 1100 00011121111 12233333467899999999999
Q ss_pred cccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCC-EEEEeecCCCCC
Q 033088 70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLGRGT 126 (127)
Q Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~~ 126 (127)
.......++.+|++|+|+|+++....+. .+++..+.. .++| +++++||+|+..
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~--lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQ--VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHH--HTCSCEEEEEECCTTCC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHH--cCCCeEEEEEeeccccc
Confidence 8877788999999999999988654444 344455544 3688 899999999864
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.70 E-value=2.1e-17 Score=105.85 Aligned_cols=114 Identities=15% Similarity=0.051 Sum_probs=68.4
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeee-eEEEECCeEEEEEEEeCCCccc----------ccccCC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQED----------YNRLRP 74 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 74 (127)
....+++++|++|||||||++++.+..+.....++.+.... .....++ .+.+||+||... ++....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 45689999999999999999999987654444444444332 2222333 477999999742 222222
Q ss_pred Ccc---cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 75 LSY---RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 75 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.++ +.++++++++|+++..+... ..+...+.. .+.|+++++||+|+..
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~--~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD--SNIAVLVLLTKADKLA 151 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH--TTCCEEEEEECGGGSC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEecccCCC
Confidence 233 57899999999987654432 122222322 4789999999999753
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.70 E-value=3.9e-17 Score=120.33 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=83.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc----------------eeeee-eeEEEECCeEEEEEEEeCCCcc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----------------VFDNF-SANVVAEGTTVNLGLWDTAGQE 67 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~D~~g~~ 67 (127)
..+..+++++|..|+|||||+++|+..........+ .+..+ ..........+.+++|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 356789999999999999999999843322110000 01111 1122222234689999999999
Q ss_pred cccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|......+++.+|++++|+|+++....+. ..++..+.. .++|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt--~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhH--HHHHHHHHH--ccCCEEEEecCCchh
Confidence 998888889999999999999887655554 355555554 479999999999974
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=2.5e-16 Score=109.95 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=47.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC-ce-eeeeee-EE-------------------EECC-eEEEEEEEeCCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TV-FDNFSA-NV-------------------VAEG-TTVNLGLWDTAG 65 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~-~~-~~~~~~-~~-------------------~~~~-~~~~~~~~D~~g 65 (127)
+||+++|.+|+|||||+|++.+........| ++ ...... .. ..++ ...++++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763222111 11 111110 00 1222 247899999999
Q ss_pred ccc----ccccCC---CcccCCcEEEEEEeCCCh
Q 033088 66 QED----YNRLRP---LSYRGADVFVLAFSLVSR 92 (127)
Q Consensus 66 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 92 (127)
... .+.+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 232333 457899999999999874
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.69 E-value=5.7e-18 Score=123.31 Aligned_cols=116 Identities=17% Similarity=0.156 Sum_probs=62.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCC--CC-----------------------------CCCCCceeeeeeeEEEECCe
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FP-----------------------------TDYIPTVFDNFSANVVAEGT 54 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (127)
...++|+++|..++|||||+++|+... .. .+..+.++.... ...+...
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~-~~~~~~~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVA-STTFESD 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEee-EEEEEeC
Confidence 457899999999999999999996421 00 000111111110 1111222
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChH---HH----HHHHHHHHHHHhhhCCCCC-EEEEeecCCCCC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SY----ENVLKKWIPELQHYSPGVP-VVLVGTKLGRGT 126 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-~~lv~nK~Dl~~ 126 (127)
...+.+|||||+++|.......++.+|++|+|+|+++.. .+ +. ...+..+.. .++| +++|+||+|+..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt--~e~l~~~~~--lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQT--REHAYLLRA--LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSH--HHHHHHHHH--SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHH--HHHHHHHHH--cCCCeEEEEEecccccc
Confidence 367899999999999998888999999999999998532 11 11 222222322 2455 999999999853
No 186
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.68 E-value=3.8e-17 Score=113.18 Aligned_cols=101 Identities=12% Similarity=0.030 Sum_probs=72.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 89 (127)
+|+++|..++|||||+++|+ ....|....+ .........+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~---~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM---YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE---EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE---EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 1111111111 1222223469999999999987776777899999999999
Q ss_pred CChHHHHHHHHHHHHHHhhhCCCCCE-EEEee-cCCC
Q 033088 90 VSRASYENVLKKWIPELQHYSPGVPV-VLVGT-KLGR 124 (127)
Q Consensus 90 ~~~~s~~~~~~~~~~~~~~~~~~~p~-~lv~n-K~Dl 124 (127)
+.. ..... .+++..+.. .++|. ++++| |+|+
T Consensus 93 ~~g-~~~qt-~e~~~~~~~--~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 93 PQG-LDAHT-GECIIALDL--LGFKHGIIALTRSDST 125 (370)
T ss_dssp TTC-CCHHH-HHHHHHHHH--TTCCEEEEEECCGGGS
T ss_pred CCC-CcHHH-HHHHHHHHH--cCCCeEEEEEEeccCC
Confidence 543 23333 556655554 35777 88999 9998
No 187
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.67 E-value=4.4e-16 Score=108.55 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=62.9
Q ss_pred EEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCC----------hHHHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 033088 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKLG 123 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~D 123 (127)
+.+++||++|++.++..|..|+++++++|+|||+++ ..++.++ ..|+..+.+. .+++|++||+||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence 789999999999999999999999999999999999 8899998 7888887664 37899999999999
Q ss_pred CC
Q 033088 124 RG 125 (127)
Q Consensus 124 l~ 125 (127)
+.
T Consensus 296 L~ 297 (402)
T 1azs_C 296 LL 297 (402)
T ss_dssp HH
T ss_pred hh
Confidence 73
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=8.9e-16 Score=107.66 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=67.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCC-C-------CCceeeee-eeEEEECCeEEEEEEEeCCCcccccc------
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD-Y-------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------ 71 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~-------~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~------ 71 (127)
..++|+++|++|+|||||++.|++..+... . .++..... ...+...+....+.+||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 468899999999999999999998766322 1 11111111 11112233345799999999765311
Q ss_pred -------------------cCCCcccCCcEEEEEEeCCCh-HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 72 -------------------LRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 72 -------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.+.++.++++.+++|..... .++......|+..+. .++|+++|+||+|+..
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLT 181 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCcc
Confidence 234556666665555554432 345554346777775 3799999999999864
No 189
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.63 E-value=2.3e-15 Score=103.94 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=54.6
Q ss_pred EEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCC----------hHHHHHHHHHHHHHHhhh--CCCCCEEEEeecC
Q 033088 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKL 122 (127)
Q Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~~lv~nK~ 122 (127)
.+.+++||++|++.++..|..++++++++|||||+++ ..++.++ ..|+..+.+. ..++|++|++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEECh
Confidence 3789999999999999999999999999999999998 7789988 6666666553 3789999999999
Q ss_pred CCC
Q 033088 123 GRG 125 (127)
Q Consensus 123 Dl~ 125 (127)
|+.
T Consensus 279 DL~ 281 (362)
T 1zcb_A 279 DLL 281 (362)
T ss_dssp HHH
T ss_pred hhh
Confidence 974
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.62 E-value=6.1e-16 Score=106.57 Aligned_cols=117 Identities=20% Similarity=0.197 Sum_probs=70.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCC------Ccee--------------------eeee--------------
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI------PTVF--------------------DNFS-------------- 46 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~------~~~~--------------------~~~~-------------- 46 (127)
...+|+++|.+++|||||+|+|.+..+.+... |+.. .++.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 46799999999999999999999987743221 2100 0000
Q ss_pred ----------eEEEEC-CeEEEEEEEeCCCccc-------------ccccCCCcccCCcEEE-EEEeCCChHHHHHHHHH
Q 033088 47 ----------ANVVAE-GTTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFV-LAFSLVSRASYENVLKK 101 (127)
Q Consensus 47 ----------~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~ 101 (127)
..+.+. .....+.+|||||... +..+...|++.++.++ +|.+.+....-... ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 000110 1125699999999632 3344455666665555 45565442222222 23
Q ss_pred HHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 102 WIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 102 ~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.+.+.. .+.|+++|+||+|+..
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSC
T ss_pred HHHHhCc--CCCceEEEeccccccC
Confidence 4444443 5789999999999864
No 191
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.62 E-value=6.3e-17 Score=109.37 Aligned_cols=96 Identities=16% Similarity=0.102 Sum_probs=81.1
Q ss_pred HHHHHHhcCCCC-CCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChH-HHHHHHH
Q 033088 23 CMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLK 100 (127)
Q Consensus 23 sl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 100 (127)
+|+.+++.+.|. ..+.||+++.+......++ .+++||+ +++++.+++.+++++|++++|||++++. ++..+ +
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence 688888999998 7889999876654432333 6889999 8999999999999999999999999987 67776 8
Q ss_pred HHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 101 KWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 101 ~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.|+..++. .++|+++|+||+||..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYD 129 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCC
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCC
Confidence 99998876 6899999999999864
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.58 E-value=2.2e-15 Score=108.95 Aligned_cols=118 Identities=14% Similarity=0.021 Sum_probs=83.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCC--------------CCCCCce------eeee-eeEEEECCeEEEEEEEeC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP--------------TDYIPTV------FDNF-SANVVAEGTTVNLGLWDT 63 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~--------------~~~~~~~------~~~~-~~~~~~~~~~~~~~~~D~ 63 (127)
..+..+|+|+|-.++|||||..+++...-. ....... +.+. ............++++||
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT 107 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence 347899999999999999999999621100 0000000 1111 111122222367999999
Q ss_pred CCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 64 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
||+.+|...-...++-+|++|+|+|+...-..+.. ..|....+ .++|.+++.||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH---hCCceEEEEecccchh
Confidence 99999999888999999999999999998777775 66655444 4899999999999864
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.58 E-value=2.7e-14 Score=98.42 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=54.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC--ceeeeeeeEEEECCe---------------EEEEEEEeCCCccccc-
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDYN- 70 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~- 70 (127)
++|+++|.+|+|||||+|++.+..+.....| |..... ..+...+. ...+++||+||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~-g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT-GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS-SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE-EEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 6899999999999999999998764322222 222211 12223321 1469999999987653
Q ss_pred ---ccCCCc---ccCCcEEEEEEeCCC
Q 033088 71 ---RLRPLS---YRGADVFVLAFSLVS 91 (127)
Q Consensus 71 ---~~~~~~---~~~~~~~i~v~d~~~ 91 (127)
.+...+ ++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 343433 689999999999985
No 194
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=2.6e-14 Score=106.11 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=82.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC--------CCCC--CCCCceeeeeee---------EEEEC-----CeEEEEEEE
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN--------KFPT--DYIPTVFDNFSA---------NVVAE-----GTTVNLGLW 61 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~--------~~~~--~~~~~~~~~~~~---------~~~~~-----~~~~~~~~~ 61 (127)
++..+|+|+|--.+|||||..+|+.. .... .+..+...+..+ .+... ...+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 57889999999999999999998621 1110 011111111111 11111 235789999
Q ss_pred eCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 62 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
||||+.+|...-...++-+|++|+|+|+...-..+.. ..|....+. ++|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccC
Confidence 9999999999888999999999999999988777774 566665555 799999999999853
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.53 E-value=1.3e-15 Score=102.91 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=59.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC-CCCCCCC--------Cceeeee-eeEEEECCeEEEEEEEeCCCc-------cc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN-KFPTDYI--------PTVFDNF-SANVVAEGTTVNLGLWDTAGQ-------ED 68 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~-~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~D~~g~-------~~ 68 (127)
...++|+++|++|+|||||+++++.. .++.... ++..... ......++....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999998865 4433221 1211111 112222344578999999998 44
Q ss_pred ccccCC-------Cccc-------------CCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 69 YNRLRP-------LSYR-------------GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 69 ~~~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+..+.. .+++ .+++++++.+.+. .++......+++.+ ..+.++++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---HhcCCEEEEEEeCCCCC
Confidence 433322 2222 2344555544322 22333322333333 35789999999999864
No 196
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.52 E-value=5.2e-14 Score=98.73 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=74.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCceeeeeeeEEEECCeEEEEEEEeCCCccc----ccccCCCc---ccCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLS---YRGA 80 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~ 80 (127)
-.+.++|++|+|||||++.+...... ..+..+........+..++ ...+.+||+||... +..+...+ .+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 35789999999999999999876432 1111111111111223332 24688999999743 22222222 3469
Q ss_pred cEEEEEEeCCChHHHHHHHHHHHHHHhhhC---CCCCEEEEeecCCCCC
Q 033088 81 DVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLGRGT 126 (127)
Q Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~~lv~nK~Dl~~ 126 (127)
+.++.++|++ ...+..+ ..|.+++.... .+.|.++++||+|+..
T Consensus 237 ~~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp SEEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred HhhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 9999999998 5566666 67777666543 3688999999999864
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.9e-13 Score=94.64 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=74.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCceeeeeeeEEEECCeEEEEEEEeCCCccccc----ccCC---CcccC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----RLRP---LSYRG 79 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~---~~~~~ 79 (127)
..+|.++|.|++|||||+|++.+...... +..++-+...-.+.+.+ .++++.|+||...-. .... ..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 35899999999999999999998664433 22222222233445555 468999999963221 1111 23578
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+|++++|+|++++..-......-+..........|..++.||+|..
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 9999999999987433222233233322222467888999999974
No 198
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.43 E-value=8.6e-14 Score=96.84 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=48.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCe---------------EEEEEEEeCCCccccc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGT---------------TVNLGLWDTAGQEDYN 70 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~~~D~~g~~~~~ 70 (127)
...++.++|.+|+|||||+|++.+........|..+... ...+...+. ...+++||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 458999999999999999999998765333222222111 112222221 2359999999987644
Q ss_pred c-------cCCCcccCCcEEEEEEeCCChHHH
Q 033088 71 R-------LRPLSYRGADVFVLAFSLVSRASY 95 (127)
Q Consensus 71 ~-------~~~~~~~~~~~~i~v~d~~~~~s~ 95 (127)
. .+..+++++|++++|+|+.+.+++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 3 234457899999999999865443
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.38 E-value=4e-14 Score=104.01 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=81.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc--CCCCC------C--CCCce------eeee-eeEEEECCeEEEEEEEeCCCccccc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS--NKFPT------D--YIPTV------FDNF-SANVVAEGTTVNLGLWDTAGQEDYN 70 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~--~~~~~------~--~~~~~------~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~ 70 (127)
..||.|+|-..+|||||..+++. +.... . +..+. +.+. ............+++.||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 46899999999999999999863 11110 0 00000 1111 1111222234578999999999999
Q ss_pred ccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
..-...++-+|++|+|+|+...-..+.. ..|....+. ++|.+++.||+|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEecccccc
Confidence 9888899999999999999988766664 555555554 789999999999753
No 200
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.37 E-value=3.6e-12 Score=94.89 Aligned_cols=116 Identities=17% Similarity=0.128 Sum_probs=72.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCC-Ccee----ee-------e-----------------------------
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-PTVF----DN-------F----------------------------- 45 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~-~~~~----~~-------~----------------------------- 45 (127)
...+|+++|..++|||||+|.+.+..+.+... .++. .. +
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45799999999999999999999977633211 1100 00 0
Q ss_pred -----------eeEEEECCeEEEEEEEeCCCcccc-------------cccCCCcc-cCCcEEEEEEeCCChHHHHHHHH
Q 033088 46 -----------SANVVAEGTTVNLGLWDTAGQEDY-------------NRLRPLSY-RGADVFVLAFSLVSRASYENVLK 100 (127)
Q Consensus 46 -----------~~~~~~~~~~~~~~~~D~~g~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 100 (127)
...+...+ ...+.++||||-... ..+...|+ +.+|++++|+|++........ .
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence 00000111 124779999995431 11222233 578999999999865333332 2
Q ss_pred HHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 101 KWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 101 ~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.++..+.. .+.|+++|+||+|+..
T Consensus 208 ~ll~~L~~--~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 208 KIAKEVDP--QGQRTIGVITKLDLMD 231 (772)
T ss_dssp HHHHHHCT--TCSSEEEEEECTTSSC
T ss_pred HHHHHHHh--cCCCEEEEEeCcccCC
Confidence 45555654 4789999999999864
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.29 E-value=1.5e-11 Score=85.11 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=53.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCC-ceeeeeeeEEEECC-------------------eEEEEEEEeCCCcc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIP-TVFDNFSANVVAEG-------------------TTVNLGLWDTAGQE 67 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~~ 67 (127)
+++.++|.+|+|||||++++.+.... ..+.. |...... .....+ ....+++||+||..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 68999999999999999999876422 11111 1111111 111111 23569999999987
Q ss_pred cccc----cCCC---cccCCcEEEEEEeCCC
Q 033088 68 DYNR----LRPL---SYRGADVFVLAFSLVS 91 (127)
Q Consensus 68 ~~~~----~~~~---~~~~~~~~i~v~d~~~ 91 (127)
.... +... .++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6532 2222 3689999999999975
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.29 E-value=2.5e-12 Score=82.77 Aligned_cols=108 Identities=15% Similarity=0.050 Sum_probs=62.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-------------eeEEEECC------------------eE
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-------------SANVVAEG------------------TT 55 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~------------------~~ 55 (127)
...+++++|.+|+|||||+++|+..............+. .....++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 467999999999999999999986532111111110000 00011111 12
Q ss_pred EEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..+.+|||+|+...... +....+.+++|+|+.+.... . ..+...+ +.|+++|+||+|+.
T Consensus 109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~--~-~~~~~~~-----~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV--V-EKHPEIF-----RVADLIVINKVALA 167 (221)
T ss_dssp CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH--H-HHCHHHH-----HTCSEEEEECGGGH
T ss_pred CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh--h-hhhhhhh-----hcCCEEEEecccCC
Confidence 46789999985211111 11256889999998765321 1 1222221 47899999999973
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.28 E-value=3.4e-13 Score=92.98 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=40.4
Q ss_pred EEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+.+.+|||||..... ...++.+|++++|+|....+..+.+ . ....+.|+++|+||+|+.
T Consensus 172 ~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 172 FDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGE 230 (355)
T ss_dssp CCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGG
T ss_pred CCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCc
Confidence 578999999953321 1235789999999998765444332 1 111245899999999975
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.27 E-value=2.6e-13 Score=93.38 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=34.9
Q ss_pred EEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+.+.++||+|..... ....+.+|++++|+|.+.....+.+ .. .+ -+.|.++++||+|+.
T Consensus 167 ~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 167 YDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGD 225 (349)
T ss_dssp CSEEEEECCCC--CH---HHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGG
T ss_pred CCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCC
Confidence 467899999953211 2345789999999998875433222 11 11 245789999999984
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.24 E-value=5.6e-14 Score=90.83 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=29.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeee
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN 44 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~ 44 (127)
+.++|+++|.+|||||||+++|+...+...+.+++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 56899999999999999999999876655444454433
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.21 E-value=1.4e-11 Score=81.23 Aligned_cols=68 Identities=15% Similarity=-0.075 Sum_probs=41.3
Q ss_pred EEEEEEeCCCcccccccCC------CcccCCcEEEEEEeCCCh---HHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRP------LSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.+.+|||||+........ ..+.. +++++++|.... .++............ ..+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 4789999999876543321 13356 888888887543 233222111111111 24689999999999853
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.19 E-value=1.2e-12 Score=89.84 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=38.2
Q ss_pred EEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
+.+.++||||..+.... ..+.+|++++|+|.+.....+.+ .. .. .+.|.++|+||+|+..
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~----~~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-KK---GL----MEVADLIVINKDDGDN 208 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC-CH---HH----HHHCSEEEECCCCTTC
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-HH---hh----hcccCEEEEECCCCCC
Confidence 57899999996544332 35889999999998765332211 10 11 1467899999999864
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.05 E-value=3.3e-10 Score=78.96 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=55.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCC-CCCCCCceeeee-eeEEEECCe---------------EEEEEEEeCCCcccc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF-SANVVAEGT---------------TVNLGLWDTAGQEDY 69 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~~~D~~g~~~~ 69 (127)
...++.++|++|+|||||+|.+.+... .....|...... .-.+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999998765 333333221111 122333321 135889999996432
Q ss_pred cc-------cCCCcccCCcEEEEEEeCCC
Q 033088 70 NR-------LRPLSYRGADVFVLAFSLVS 91 (127)
Q Consensus 70 ~~-------~~~~~~~~~~~~i~v~d~~~ 91 (127)
.. .....++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 22233578999999999864
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=3.6e-09 Score=74.38 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=60.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCC--ceeeeee-eEEEEC--CeEEEEEEEeCCCccccc-----------
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFS-ANVVAE--GTTVNLGLWDTAGQEDYN----------- 70 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~--~~~~~~~-~~~~~~--~~~~~~~~~D~~g~~~~~----------- 70 (127)
..++++++|++|+|||||++.+++..+...... ....... ..+..+ +....+.++|++|.....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 346799999999999999999988654221111 0111111 111112 223468899988743210
Q ss_pred --------------ccCC--CcccCC--cE-EEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 71 --------------RLRP--LSYRGA--DV-FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 71 --------------~~~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
...+ .....+ |+ +.|+.|....-+..+ ..+++.+. .++|+++|.||+|...
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~---~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD---SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC---SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh---hCCCEEEEEcchhccc
Confidence 0010 012233 33 556666554333333 35555554 5789999999999754
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.01 E-value=1.6e-09 Score=72.16 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=63.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCC--------CCceeeeeeeEEEECC--eEEEEEEEeCCCccccc-------
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY--------IPTVFDNFSANVVAEG--TTVNLGLWDTAGQEDYN------- 70 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~------- 70 (127)
.++++++|++|+|||||++.+++...+..- .+............+. ....+.++|++|-....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999864322110 0000000001111121 12367899998842110
Q ss_pred ---------------------ccCCCcccCCcEEEEEEeCC-ChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 71 ---------------------RLRPLSYRGADVFVLAFSLV-SRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 71 ---------------------~~~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
...+..+..+++++++.|.. .+-+... ...++.+.+ ..++++|.+|+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCC
Confidence 00112234568888888854 2222222 355566655 389999999999753
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.95 E-value=1.8e-10 Score=73.68 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=41.0
Q ss_pred CCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHH---HHHHhhhC--CCCCEEEEeecC-CCC
Q 033088 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYS--PGVPVVLVGTKL-GRG 125 (127)
Q Consensus 63 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~--~~~p~~lv~nK~-Dl~ 125 (127)
.+||..++..|+.||+++|++|||+|.+|++... +.+++ ...+.+.. .++|++|++||. |++
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 3488899999999999999999999999876544 32443 44444432 689999999995 675
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.94 E-value=1.4e-09 Score=73.54 Aligned_cols=58 Identities=16% Similarity=0.024 Sum_probs=50.4
Q ss_pred cccccccCCCcccCCcEEEEEEeCCChH-HHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 66 QEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
++++..+.+.+++++|++++|+|++++. ++..+ +.|+..+.. .++|+++|+||+|+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLN 124 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCC
Confidence 6677778888999999999999999886 78876 899988876 6899999999999864
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=1.6e-10 Score=80.05 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=62.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC-----C-CCCCCCCceeeeeeeEEEECCeEEEEEEEeCCCcccccc----cCCCc-
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN-----K-FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LRPLS- 76 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~~~~- 76 (127)
..+++++|.+|+|||||+|.+++. . ......+.++ ........+.. +.++||||-..... +....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT-~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT-LDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS-CEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE-EeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 357999999999999999999875 1 1111111111 11122333332 78999999643221 11111
Q ss_pred --c---cCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 77 --Y---RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 77 --~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+ +..+.++++++.....-...+ ..+..+.. .+.|++++.||+|..
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~l~~l~~--~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL--ARLDYIKG--GRRSFVCYMANELTV 287 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCE
T ss_pred HHHhcccccCceEEEEcCCceEEECCE--EEEEEccC--CCceEEEEecCCccc
Confidence 1 678899999987422111111 11222222 468999999999974
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.90 E-value=1.9e-10 Score=78.80 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=34.7
Q ss_pred EEEEEEeCCCcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
..+.++||+|..+... ...+.+|.+++++|....+..+.+ .... . +.+.+++.||+|+.
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i-~~~i---~----~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI-KKGI---F----ELADMIAVNKADDG 206 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C-CTTH---H----HHCSEEEEECCSTT
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH-HHHH---h----ccccEEEEEchhcc
Confidence 5689999999743221 234689999999998654322211 1111 1 23456777999963
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.83 E-value=3.3e-10 Score=78.50 Aligned_cols=111 Identities=9% Similarity=-0.024 Sum_probs=62.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCC-----CCCCceeeee-eeEEEECCeEEEEEEEeCCCcccccccCC----C--
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPT-----DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRP----L-- 75 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~----~-- 75 (127)
..+++++|.+|+|||||+|++++..... ......+++. ......+.. +.++||||-.....+.. .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 3579999999999999999998753211 0111111111 122233332 78999999643221111 0
Q ss_pred --c--ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 76 --S--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 76 --~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+ .+..+.++++++.....-...+ ..+..+.. .+.|+++++||+|..
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTI 286 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCE
T ss_pred HHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCcccc
Confidence 1 2567888888886322111111 11222222 468999999999974
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.80 E-value=7e-09 Score=69.44 Aligned_cols=58 Identities=21% Similarity=0.168 Sum_probs=35.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeee-eeEEEECCeEEEEEEEeCCCcc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~ 67 (127)
...++++++|.+|+|||||+|++.+...... ....+.+. ...+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 3568999999999999999999997653322 11111111 11223333 47899999964
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.78 E-value=4e-09 Score=69.90 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=34.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeeeeee-EEEECCeEEEEEEEeCCCccc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~ 68 (127)
++++++|.+|+|||||+|++.+...... .++.+.+... .+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 6999999999999999999997665322 2222322222 222232 478999999753
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.74 E-value=6.6e-09 Score=74.55 Aligned_cols=113 Identities=17% Similarity=0.100 Sum_probs=62.0
Q ss_pred cceeEEEEECCCCCcHHHHHHHHh------cCCCC----CCCCCcee-------eeeeeEEEE-----------------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYT------SNKFP----TDYIPTVF-------DNFSANVVA----------------- 51 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~------~~~~~----~~~~~~~~-------~~~~~~~~~----------------- 51 (127)
.....|+++|.+||||||+++++. +.+.. +.+.+... ......+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999997 22110 00011000 000000000
Q ss_pred -CCeEEEEEEEeCCCcccccc-cC---CCc--ccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCE-EEEeecCC
Q 033088 52 -EGTTVNLGLWDTAGQEDYNR-LR---PLS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLG 123 (127)
Q Consensus 52 -~~~~~~~~~~D~~g~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-~lv~nK~D 123 (127)
....+.+.++||||...... .. ... ...+|.+++|+|........ .....+.+ .+|+ .+|.||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~----~~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE----AQAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH----HHHHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH----HHHHHHHh---hcCceEEEEeCCc
Confidence 00235688999999753211 10 001 22789999999998754321 22233333 2575 89999999
Q ss_pred CC
Q 033088 124 RG 125 (127)
Q Consensus 124 l~ 125 (127)
..
T Consensus 252 ~~ 253 (504)
T 2j37_W 252 GH 253 (504)
T ss_dssp SC
T ss_pred cc
Confidence 75
No 219
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.71 E-value=4.6e-09 Score=70.27 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=46.1
Q ss_pred CCCcccccccCCCcccCCcEEEEEEeCCChHHHHHH--HHHHHHHHhhh--CCCCCEEEEeec-CCCCC
Q 033088 63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHY--SPGVPVVLVGTK-LGRGT 126 (127)
Q Consensus 63 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~--~~~~p~~lv~nK-~Dl~~ 126 (127)
.+||...+..|+.|++++|++|+|+|.+|++.+... ..++...+.+. ..++|++|++|| .|+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 468899999999999999999999999998754422 02233444432 368999999997 58753
No 220
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.53 E-value=1.3e-07 Score=69.05 Aligned_cols=65 Identities=20% Similarity=0.090 Sum_probs=39.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce-eeeeeeEEE---E-CCeEEEEEEEeCCCcccc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVV---A-EGTTVNLGLWDTAGQEDY 69 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~-~~~~~~~~~---~-~~~~~~~~~~D~~g~~~~ 69 (127)
......|+|+|.+|+|||||+|++++....-....+. ..+...... . ......+.++||||....
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 3467889999999999999999999875321111111 111111111 1 112246889999997543
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.45 E-value=3.5e-07 Score=64.19 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=58.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCce-eeee--eeEEEECCeEEEEEEEeCCCcccccccCCC-----cccC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNF--SANVVAEGTTVNLGLWDTAGQEDYNRLRPL-----SYRG 79 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-----~~~~ 79 (127)
...+.++|++|+|||||++.+.+...+..-.-.. +... ...+......-.+.+||++|.......... -+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4579999999999999999998743322211111 1000 011111111114789999985321111111 1334
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCC
Q 033088 80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGR 124 (127)
Q Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl 124 (127)
.+..++ ++..... -+. ..+...+.. .+.|+++|.||.|+
T Consensus 149 ~~~~~~-lS~G~~~-kqr--v~la~aL~~--~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 149 YDFFII-ISATRFK-KND--IDIAKAISM--MKKEFYFVRTKVDS 187 (413)
T ss_dssp CSEEEE-EESSCCC-HHH--HHHHHHHHH--TTCEEEEEECCHHH
T ss_pred cCCeEE-eCCCCcc-HHH--HHHHHHHHh--cCCCeEEEEecCcc
Confidence 455555 7765211 112 233333333 35799999999875
No 222
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.39 E-value=3e-07 Score=67.46 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.++++|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998764
No 223
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.34 E-value=7.5e-09 Score=73.73 Aligned_cols=99 Identities=16% Similarity=0.002 Sum_probs=59.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCceeee---eeeEEEECCeEEEEEEEeCCCccc--ccccC-------
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN---FSANVVAEGTTVNLGLWDTAGQED--YNRLR------- 73 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~------- 73 (127)
....+|+++|.+||||||+.++|...-... ..++.... +... ..+......+||..|.+. .+..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~--~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRD--MVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHH--HHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhh--hccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999987542211 11221111 1111 011112346889888732 33332
Q ss_pred -CCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhh
Q 033088 74 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY 109 (127)
Q Consensus 74 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 109 (127)
..++..+++.++|+|.++. +.... +.|...+++.
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~ 148 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN 148 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc
Confidence 4566677888999999987 34443 6777776653
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.33 E-value=5.4e-07 Score=63.66 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=38.7
Q ss_pred EEEEEEeCCCccccc-----cc-CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCC-C-EEEEeecCCCC
Q 033088 56 VNLGLWDTAGQEDYN-----RL-RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-P-VVLVGTKLGRG 125 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~-----~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~~lv~nK~Dl~ 125 (127)
+.+.++||||..... .+ ....+..+|.+++|+|...... . ......+. +.. | ..+|.||.|..
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A-GIQAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H-HHHHHHHH---TTSCSCEEEEEECSSSC
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H-HHHHHHHh---hcccCCeEEEEeCCCCc
Confidence 567899999965421 11 0112236899999999865532 2 12223333 345 6 88999999974
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.18 E-value=1.3e-06 Score=61.80 Aligned_cols=64 Identities=16% Similarity=0.065 Sum_probs=37.7
Q ss_pred EEEEEEeCCCcccccccC----C--CcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCC
Q 033088 56 VNLGLWDTAGQEDYNRLR----P--LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRG 125 (127)
Q Consensus 56 ~~~~~~D~~g~~~~~~~~----~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~ 125 (127)
+.+.++||+|........ . .....+|.+++|+|........+ ....+.+. -.+..+|.||.|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~----~a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN----QALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH----HHHHHHHS--CTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH----HHHHHHhh--CCCeEEEEECCCCc
Confidence 568899999964321100 0 11235789999999876543322 22333331 23457999999975
No 226
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.09 E-value=7e-07 Score=61.85 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=45.8
Q ss_pred CcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.++.|+.....+.+.++++++|+|+++.. ..|...+.+...+.|+++|+||+|+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIP 110 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSC
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCC
Confidence 46788888888899999999999998852 567666766667899999999999853
No 227
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.98 E-value=6.2e-06 Score=50.92 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=23.5
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
|.+.......++++|++||||||+++.+..
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 566556667899999999999999988754
No 228
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.89 E-value=7.9e-06 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999888653
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.88 E-value=1.5e-06 Score=60.15 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=43.8
Q ss_pred CcccccccCCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 65 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.++.|+.....+++.++++++|+|+++..+ .|...+.+...+.|+++|+||+|+..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLP 112 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSC
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCC
Confidence 477888888888899999999999998763 45555555556889999999999853
No 230
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.88 E-value=2.6e-05 Score=55.33 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=22.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..+..-|.|+|++++|||+|+|++++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 34667799999999999999999985
No 231
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.87 E-value=8.3e-06 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-.++++|++|||||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998753
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.85 E-value=6.6e-06 Score=58.10 Aligned_cols=23 Identities=22% Similarity=0.017 Sum_probs=20.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~ 29 (127)
....++++|++|+||||++..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45778999999999999998876
No 233
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.82 E-value=1.2e-05 Score=50.97 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
-.++++|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 234
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.81 E-value=7.8e-05 Score=50.25 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 033088 9 IKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~ 29 (127)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999998
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.80 E-value=1.6e-05 Score=49.63 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCCCcceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 2 ASSASRFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 2 ~~~~~~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
+|...+...|+++|.+||||||+.+.|...
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 455556678999999999999999888654
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.77 E-value=1.8e-05 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
..--++++|++|||||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4456899999999999999998753
No 237
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.76 E-value=1.6e-05 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=21.0
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
......+.++|+.|||||||++.+.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999988765
No 238
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.74 E-value=1.7e-05 Score=49.57 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033088 11 CVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~ 30 (127)
++++|++|||||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999874
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.74 E-value=1.8e-05 Score=49.91 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998764
No 240
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.73 E-value=1.6e-05 Score=49.11 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.8
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 033088 10 KCVTVGDGAVGKTCMLICY 28 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l 28 (127)
-++++|++|||||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999943
No 241
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.71 E-value=2e-05 Score=50.07 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988753
No 242
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.71 E-value=2.1e-05 Score=50.72 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
--++++|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999998764
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.70 E-value=2.1e-05 Score=49.10 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.-.++++|++|||||||++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999764
No 244
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.69 E-value=2.6e-05 Score=49.16 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=21.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
...++++|++||||||+++.+...-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999987643
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.69 E-value=2.8e-05 Score=49.47 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=21.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.....+.|+|++|||||||++.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999987753
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.68 E-value=2.4e-05 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-.++++|++|||||||++.+.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999988763
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.68 E-value=2.7e-05 Score=48.97 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
|+|.||+|||||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999753
No 248
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.68 E-value=3.1e-05 Score=49.05 Aligned_cols=30 Identities=17% Similarity=0.017 Sum_probs=23.4
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
|.+...+...|++.|.+||||||+.+.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 333334467899999999999999998864
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.66 E-value=2.8e-05 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.--++++|++|||||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 345889999999999999999865
No 250
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.66 E-value=3.6e-05 Score=47.90 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=21.6
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
......|++.|.+||||||+...|..
T Consensus 3 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 3 KSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 33456799999999999999988864
No 251
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.66 E-value=3.1e-05 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..-.++++|++||||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998854
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.62 E-value=3.5e-05 Score=48.80 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
..-|+++|++|||||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998753
No 253
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.62 E-value=2.1e-05 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
-.++++|++|+|||||+|.+....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 468999999999999999998643
No 254
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.61 E-value=0.00011 Score=49.73 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=39.6
Q ss_pred CCCcccCCcEEEEEEeCCChHHHHHHHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.+....++|.+++|+|+.++..-.+..++++..... .++|.++|.||+||..
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIE 131 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCc
Confidence 344678999999999998664333344777766655 5789999999999865
No 255
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.61 E-value=1.4e-05 Score=53.41 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=39.9
Q ss_pred EeCCCcc-cccccCCCcccCCcEEEEEEeCCChHHHHH-HHHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 61 WDTAGQE-DYNRLRPLSYRGADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 61 ~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
-..||+. .........++.+|+++.|+|+.++.+..+ ....|+ .+.|.++|+||+|+..
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKAD 64 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSC
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCC
Confidence 3468875 455555567889999999999998766542 124443 5789999999999864
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.61 E-value=3.5e-05 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988754
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.59 E-value=4.2e-05 Score=46.96 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..|+++|++||||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 258
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.59 E-value=4.4e-05 Score=47.97 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=23.1
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
|.....++..|+|.|.+||||||+.+.|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 4334456788999999999999999998765
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.59 E-value=4.4e-05 Score=46.67 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 260
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.58 E-value=4.9e-05 Score=48.65 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..|.++|++||||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998764
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.58 E-value=5.4e-05 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 262
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.57 E-value=4.1e-05 Score=47.25 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
+|+++|++||||||+...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988754
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.56 E-value=4.9e-05 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
-.++++|+.|+|||||++.+.+.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999887654
No 264
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.55 E-value=5.7e-05 Score=49.20 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q 033088 8 FIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~ 29 (127)
.-.++++|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999987
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=5.6e-05 Score=47.67 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-.|+++|++||||||+...+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.54 E-value=5.3e-05 Score=46.25 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=18.3
Q ss_pred eEEEEECCCCCcHHHHHHHH
Q 033088 9 IKCVTVGDGAVGKTCMLICY 28 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l 28 (127)
.-|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999988
No 267
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.54 E-value=5.1e-05 Score=47.33 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-++++|++|||||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999874
No 268
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.54 E-value=4.9e-05 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.026 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.53 E-value=5.7e-05 Score=48.07 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 270
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.52 E-value=6e-05 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988864
No 271
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.52 E-value=4.7e-05 Score=49.18 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|++|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.51 E-value=6.3e-05 Score=47.90 Aligned_cols=21 Identities=19% Similarity=0.034 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
+|++.|++||||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.51 E-value=5.9e-05 Score=49.88 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.50 E-value=5.9e-05 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988764
No 275
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.50 E-value=5.7e-05 Score=47.66 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|++.|.+||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.50 E-value=6.4e-05 Score=48.29 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|+.|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 277
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.49 E-value=8.4e-05 Score=48.48 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+..+|++.|++||||||+..+|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998864
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.49 E-value=7e-05 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
No 279
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.49 E-value=7.1e-05 Score=47.78 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.|+++|+|||||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.49 E-value=7e-05 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-|++.|.+||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.48 E-value=7.5e-05 Score=48.78 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988764
No 282
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.48 E-value=6.6e-05 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|++|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988864
No 283
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.48 E-value=7.4e-05 Score=48.97 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 284
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.48 E-value=7.8e-05 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKF 33 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~ 33 (127)
.++++|++|+|||||+|.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999997543
No 285
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.47 E-value=9.3e-05 Score=46.63 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=21.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.....|++.|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.47 E-value=6.7e-05 Score=49.44 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.47 E-value=6.7e-05 Score=47.26 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
++.++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 578999999999999988765
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.46 E-value=7.2e-05 Score=49.43 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
-.++++|++|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998865
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.46 E-value=7.8e-05 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..|++.|.+||||||+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988754
No 290
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.46 E-value=0.00011 Score=45.50 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|+++|.+||||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.46 E-value=7.4e-05 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999988764
No 292
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.46 E-value=8.5e-05 Score=48.11 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|+.|||||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988764
No 293
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.45 E-value=8.8e-05 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+...|+++|.+||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988854
No 294
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.45 E-value=7.7e-05 Score=48.67 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 295
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.44 E-value=0.00011 Score=47.38 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=18.7
Q ss_pred ceeE-EEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIK-CVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~k-i~iiG~~~~GKssl~~~l~~ 30 (127)
+..| |+++|++||||+|...++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344 56789999999999988764
No 296
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.44 E-value=9.3e-05 Score=46.43 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
No 297
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.44 E-value=8.5e-05 Score=47.50 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+.+...|+++|.+||||||+.+.+..
T Consensus 2 ~~~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 2 NSKKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GGGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988854
No 298
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.44 E-value=8.5e-05 Score=48.07 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 033088 10 KCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~ 29 (127)
-++++|++|||||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999776
No 299
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.44 E-value=0.00014 Score=45.86 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=21.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.....|++.|.+||||||+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999988863
No 300
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.44 E-value=8.5e-05 Score=48.74 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|++|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 301
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.44 E-value=7.7e-05 Score=47.04 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+|+++|.+||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998875
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.44 E-value=9.2e-05 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|++.|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 303
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.44 E-value=8.2e-05 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|+.|||||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 304
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.43 E-value=8.3e-05 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|+.|||||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 305
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.43 E-value=9.6e-05 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..|++.|.+||||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988754
No 306
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.43 E-value=9e-05 Score=49.13 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998875
No 307
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.43 E-value=7.7e-05 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.-.++++|++|+|||+|+..+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999887653
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.43 E-value=8.9e-05 Score=50.11 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.=.++|+|++|+|||||++.+.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34689999999999999998764
No 309
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.43 E-value=8.3e-05 Score=49.41 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 310
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.43 E-value=0.00012 Score=46.25 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+...|+++|++||||||+.+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999987754
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.42 E-value=9.6e-05 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999988764
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.42 E-value=9.6e-05 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999988764
No 313
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.42 E-value=0.0001 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|+++|++||||||+...+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 314
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.42 E-value=6.9e-05 Score=47.92 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 315
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.41 E-value=0.00012 Score=45.56 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|++.|.+||||||+...+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988753
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.41 E-value=0.00012 Score=46.17 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+.|.++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 317
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.41 E-value=8.2e-05 Score=51.30 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-+++|+|++|||||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998865
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.40 E-value=5.5e-05 Score=48.78 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=15.3
Q ss_pred eEEEEECCCCCcHHHHHHHHh-cC
Q 033088 9 IKCVTVGDGAVGKTCMLICYT-SN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~-~~ 31 (127)
--++++|++|||||||++.+. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 458899999999999999998 53
No 319
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.40 E-value=9.5e-05 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+...|++.|.+||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998863
No 320
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.40 E-value=0.00012 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNKF 33 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~~ 33 (127)
.++++|++|||||||++.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999986543
No 321
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.40 E-value=7.4e-05 Score=47.83 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
....|+++|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998864
No 322
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.40 E-value=0.00013 Score=48.76 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
....-|++.|++||||||++..+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 323
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.40 E-value=0.00011 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
..-+++.|++|||||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346889999999999999998853
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.39 E-value=0.00014 Score=45.97 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=22.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.....|.++|++||||||+++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998764
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.39 E-value=0.00013 Score=46.03 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 326
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.39 E-value=9.8e-05 Score=48.57 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|++|||||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.39 E-value=0.00012 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.6
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
....|++.|.+||||||+.+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.38 E-value=0.00015 Score=49.17 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=21.8
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.....-+.|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34567899999999999999987754
No 329
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.38 E-value=0.00017 Score=49.08 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 033088 11 CVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~ 30 (127)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 330
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.38 E-value=0.0001 Score=48.80 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988764
No 331
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.38 E-value=0.00015 Score=45.56 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998764
No 332
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.37 E-value=9.9e-05 Score=47.01 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 333
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.36 E-value=0.00014 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHH
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICY 28 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l 28 (127)
.+..||+++|.+|||||||+.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45799999999999999999875
No 334
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.36 E-value=9.7e-05 Score=47.20 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
No 335
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.36 E-value=0.00013 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.++++|++|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988654
No 336
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.35 E-value=0.00017 Score=48.36 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=21.2
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHh
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~ 29 (127)
......|.|.|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3467889999999999999998764
No 337
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.33 E-value=0.00016 Score=47.03 Aligned_cols=24 Identities=21% Similarity=0.082 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
....+.++|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998765
No 338
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.32 E-value=0.00011 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999888643
No 339
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.31 E-value=0.00017 Score=47.15 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=21.4
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...++.|.|.|.+||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988865
No 340
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.31 E-value=9.2e-05 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
=.++++|++|||||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 36899999999999999888753
No 341
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=0.0002 Score=45.19 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=21.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.....+.++|++|||||||++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999988763
No 342
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.31 E-value=0.00014 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998864
No 343
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.30 E-value=6e-05 Score=46.76 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+.|+|++|||||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998875
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.30 E-value=0.00015 Score=45.28 Aligned_cols=23 Identities=17% Similarity=-0.003 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988863
No 345
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.30 E-value=0.00018 Score=46.49 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
....|+++|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988864
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.29 E-value=0.00021 Score=48.60 Aligned_cols=24 Identities=21% Similarity=0.030 Sum_probs=20.9
Q ss_pred cceeEEEEECCCCCcHHHHHHHHh
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~ 29 (127)
..++-+.++|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998774
No 347
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.00018 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888653
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.29 E-value=0.00018 Score=43.81 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 349
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.29 E-value=0.00015 Score=47.54 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-++|+|++|||||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 350
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.29 E-value=0.00016 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999888643
No 351
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.29 E-value=0.00016 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999988864
No 352
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.29 E-value=0.00016 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998864
No 353
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.27 E-value=0.00018 Score=46.16 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 354
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.26 E-value=0.00017 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999998864
No 355
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.26 E-value=0.00018 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999988764
No 356
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.26 E-value=0.00016 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|+.|||||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999988754
No 357
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.26 E-value=0.00017 Score=47.87 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|+|||+|++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999998763
No 358
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.25 E-value=0.00018 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998864
No 359
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.25 E-value=0.00019 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-+.++|++|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999988764
No 360
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.25 E-value=0.00013 Score=44.15 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988763
No 361
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.24 E-value=0.00017 Score=49.71 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.++++|++|||||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999998865
No 362
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.23 E-value=0.00016 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.5
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.....|+++|++||||||+...+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998764
No 363
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.23 E-value=0.0002 Score=44.68 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988653
No 364
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.23 E-value=0.00018 Score=45.00 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|++.|.+||||||+...+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988864
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.23 E-value=0.00019 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~ 29 (127)
..-.++++|++||||||++..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34578899999999999999886
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.23 E-value=0.00029 Score=43.74 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+...|++.|.+||||||+...+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999988753
No 367
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.22 E-value=0.00026 Score=46.53 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|++.|.+||||||+...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 368
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.22 E-value=0.00024 Score=46.51 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q 033088 8 FIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~ 29 (127)
...|.|+|++||||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 369
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.22 E-value=0.00015 Score=44.82 Aligned_cols=24 Identities=25% Similarity=0.026 Sum_probs=16.3
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 370
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.21 E-value=0.00029 Score=44.89 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 371
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.20 E-value=0.00028 Score=43.68 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...+.+.|.+|||||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999998864
No 372
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.19 E-value=0.00025 Score=44.06 Aligned_cols=21 Identities=19% Similarity=-0.026 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988865
No 373
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.19 E-value=0.00014 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999988864
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.19 E-value=0.00025 Score=43.36 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999988864
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.19 E-value=0.00027 Score=47.65 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=21.3
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.....+.|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988765
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.16 E-value=7.5e-05 Score=47.32 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998864
No 377
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.15 E-value=0.00028 Score=45.03 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998873
No 378
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.15 E-value=0.00022 Score=49.78 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.++++|++|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 578999999999999998875
No 379
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.15 E-value=0.00027 Score=49.00 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
-.++++|++|||||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 380
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.15 E-value=0.0002 Score=46.26 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
+..-|++.|+.||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4567899999999999999988764
No 381
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.15 E-value=0.00026 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999988763
No 382
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.15 E-value=0.00022 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-.++++|++|||||||++.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999998864
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.14 E-value=0.00029 Score=43.65 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.|++.|.+||||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988764
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.14 E-value=0.00038 Score=42.99 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999988865
No 385
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.13 E-value=0.00027 Score=43.70 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999988754
No 386
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.13 E-value=0.00028 Score=46.70 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|+|||+|++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999998864
No 387
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.13 E-value=0.00034 Score=45.50 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.1
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~ 29 (127)
.++.|++.|++||||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999876
No 388
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.12 E-value=0.00024 Score=48.47 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
-.++++|++|||||||++.+.+-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988653
No 389
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.12 E-value=0.00023 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.-.+++.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999888653
No 390
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.11 E-value=0.00042 Score=47.27 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.2
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+.--++++|++||||||++..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988764
No 391
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.10 E-value=0.00036 Score=44.65 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-.+++.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988875
No 392
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.09 E-value=0.00015 Score=50.04 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|||||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998864
No 393
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.08 E-value=0.00043 Score=46.10 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=21.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..++.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998863
No 394
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.08 E-value=0.00058 Score=46.05 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=20.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..--++++|++||||||++..+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345788999999999999988763
No 395
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.08 E-value=0.00031 Score=49.44 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++|+|+.|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 396
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.08 E-value=0.00043 Score=42.24 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=19.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-.|++.|.+||||||+...|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998864
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.06 E-value=0.00037 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...+++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999988753
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.03 E-value=0.0006 Score=44.07 Aligned_cols=24 Identities=17% Similarity=-0.025 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+..-|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999988764
No 399
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.02 E-value=0.00045 Score=43.78 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999876
No 400
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.01 E-value=0.00038 Score=45.71 Aligned_cols=23 Identities=22% Similarity=-0.024 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-.|+++|.+||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 401
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.01 E-value=0.00042 Score=41.39 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...+++.|++|+|||+++..+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 346999999999999999877653
No 402
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.01 E-value=0.0005 Score=43.19 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999887753
No 403
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.00 E-value=0.00058 Score=46.83 Aligned_cols=22 Identities=36% Similarity=0.317 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-|+|.|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998875
No 404
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.00 E-value=0.00059 Score=43.30 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
....|++.|.+||||||+++.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999987753
No 405
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.99 E-value=0.00046 Score=43.89 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-+++.|++|+|||+|+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988865
No 406
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.99 E-value=0.00056 Score=45.65 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 407
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.99 E-value=0.0005 Score=44.22 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999998863
No 408
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.98 E-value=0.00056 Score=41.29 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.8
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 033088 11 CVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~ 29 (127)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999998764
No 409
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.98 E-value=5.2e-05 Score=50.15 Aligned_cols=55 Identities=9% Similarity=-0.010 Sum_probs=35.9
Q ss_pred CCCcc-cccccCCCcccCCcEEEEEEeCCChHHHHHH-HHHHHHHHhhhCCCCCEEEEeecCCCCC
Q 033088 63 TAGQE-DYNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLGRGT 126 (127)
Q Consensus 63 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~~lv~nK~Dl~~ 126 (127)
.||+. .........++++|+++.|+|+.++.+..+. .+ ++ +.|.++|+||+||..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIAD 60 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCC
Confidence 46664 2333445567899999999999987655432 12 21 789999999999864
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.98 E-value=0.00039 Score=46.40 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-++++|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999988764
No 411
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.97 E-value=0.0005 Score=43.24 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999988875
No 412
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00038 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-.++|+|+.|||||||++.+++-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999988753
No 413
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.95 E-value=0.00049 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=20.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..--++|+|++|||||||+..+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345689999999999999988753
No 414
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.94 E-value=0.00052 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
-.++++|++||||||+++.+++--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999988644
No 415
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.91 E-value=0.00066 Score=44.05 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred CCCCCcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 1 MASSASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 1 m~~~~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
|+-..-...++.++|++||||||+..++..
T Consensus 1 ~~~~~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 1 MAHHHHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --------CEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcccccccceeeECCCCCCHHHHHHHHHH
Confidence 344445678999999999999999988854
No 416
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.91 E-value=0.00036 Score=47.31 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.--++++|..|||||||++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3457899999999999999998653
No 417
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.91 E-value=0.00075 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..|+|+|++|||||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 418
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.91 E-value=0.00064 Score=45.48 Aligned_cols=25 Identities=12% Similarity=-0.096 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.-+++.|++|+|||+|+..+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999988753
No 419
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00098 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=20.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..--++++|++||||||++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345789999999999999988763
No 420
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.90 E-value=0.00058 Score=45.42 Aligned_cols=24 Identities=17% Similarity=0.121 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999999998763
No 421
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.89 E-value=0.001 Score=43.79 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=22.9
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
......+++.|++|+|||+|+..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345678999999999999999988764
No 422
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.89 E-value=0.00057 Score=46.97 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
=++.++|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998764
No 423
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.89 E-value=0.00075 Score=43.93 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998875
No 424
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.89 E-value=0.00071 Score=40.46 Aligned_cols=26 Identities=12% Similarity=-0.056 Sum_probs=21.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcCC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
....|++.|++|+|||+++..+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34569999999999999999887643
No 425
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.88 E-value=0.0007 Score=44.74 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=21.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
....+++.|++|+|||+|++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999998764
No 426
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.88 E-value=0.00079 Score=47.17 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.7
Q ss_pred cceeEEEEECCCCCcHHHHHHHH
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICY 28 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l 28 (127)
.+.+|++++|.++|||||++.++
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 46899999999999999999765
No 427
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.87 E-value=0.00072 Score=43.00 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.4
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
...|+|+|++|+|||+|+..|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999998653
No 428
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.87 E-value=0.00077 Score=43.54 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.6
Q ss_pred cceeEEEEECCCCCcHHHHHHHHhc
Q 033088 6 SRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 6 ~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.....|.++|.+||||||+...+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988764
No 429
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.86 E-value=0.00095 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.164 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
..-|+|.|++|||||+|...+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 445789999999999999998753
No 430
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.86 E-value=0.00075 Score=48.99 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.+.++|++|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988643
No 431
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.86 E-value=0.00059 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
=.++++|++|||||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 36899999999999999988754
No 432
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.85 E-value=0.0007 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
=.++++|++|||||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999988764
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.84 E-value=0.00064 Score=48.14 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
++.++|++|||||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999888753
No 434
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.83 E-value=0.00084 Score=44.82 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=19.9
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
....+++.|++|+|||+++..+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999976653
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.82 E-value=0.00072 Score=48.46 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.++++|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998864
No 436
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.82 E-value=0.00078 Score=46.53 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=17.1
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 033088 11 CVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~ 29 (127)
.+|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999875
No 437
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.82 E-value=0.00072 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998875
No 438
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.80 E-value=0.00077 Score=45.21 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.-.+++.|++|+|||+|++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 446999999999999999998864
No 439
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.80 E-value=0.0014 Score=43.80 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-.+++.|++|+|||+++..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999888753
No 440
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.79 E-value=0.0012 Score=41.64 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
....|.+.|..||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999988653
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.79 E-value=0.00073 Score=44.75 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999988764
No 442
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.79 E-value=0.0021 Score=43.31 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
+++-|++|+|||++++.+.+.
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999998754
No 443
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.79 E-value=0.0008 Score=46.78 Aligned_cols=24 Identities=17% Similarity=0.056 Sum_probs=20.5
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344789999999999999998874
No 444
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.78 E-value=0.0006 Score=44.79 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
+...|++.|..||||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999887653
No 445
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.78 E-value=0.0051 Score=43.75 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=20.5
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHh
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~ 29 (127)
..+..-|.|+|+.++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3456777799999999999999554
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.78 E-value=0.00079 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-+.++|+.|||||||++.+.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988864
No 447
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.77 E-value=0.00071 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.098 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-.+++.|++|+|||+|++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998875
No 448
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.77 E-value=0.00062 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.++++|++|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.77 E-value=0.0013 Score=46.29 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=21.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...-|+++|.+||||||+.+++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566889999999999999998753
No 450
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.00086 Score=43.17 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
-+++.|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877753
No 451
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.75 E-value=0.00071 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
=.++++|++|||||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999988753
No 452
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.74 E-value=0.00048 Score=46.14 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=17.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
+.+-|.|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999988764
No 453
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.73 E-value=0.00076 Score=43.11 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=19.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
-.+++.|++|+|||+++..+.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999888765
No 454
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.00095 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|++|+|||||++.+.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999988764
No 455
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.73 E-value=0.0011 Score=41.55 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 033088 10 KCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~ 30 (127)
.|.|.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988854
No 456
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.73 E-value=0.0011 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.-|+|+|+.|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998753
No 457
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.71 E-value=0.001 Score=44.26 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 458
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.71 E-value=0.0011 Score=41.46 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 459
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.71 E-value=0.001 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+++.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988754
No 460
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.70 E-value=0.0011 Score=44.98 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.-|+|.|++|||||+|...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999998754
No 461
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0012 Score=46.77 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+..|++.||||+|||+|+..+.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999863
No 462
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.67 E-value=0.00062 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
=.++++|++|||||||++.+.+-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 36899999999999999877653
No 463
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.66 E-value=0.0011 Score=44.65 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
--++|.|++|+|||+|++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 35889999999999999998764
No 464
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0014 Score=46.36 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.2
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.+..+++.|++|+|||+|+..+.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999999885
No 465
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.64 E-value=0.0011 Score=45.00 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 033088 11 CVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~ 31 (127)
+++.|++|+||||++..+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 466
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.64 E-value=0.0012 Score=44.83 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=21.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...+++.|++|+|||+|+..+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998864
No 467
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.64 E-value=0.0018 Score=43.82 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...+++.|++|+|||+|+..+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998753
No 468
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.64 E-value=0.00083 Score=49.22 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
=.++++|++|||||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999877653
No 469
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.63 E-value=0.0013 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|++|+|||||++.+.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999988764
No 470
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.63 E-value=0.0012 Score=48.02 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|+.|||||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 471
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0015 Score=46.29 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=22.0
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+-.|++.|++|+|||+|+..+.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999998863
No 472
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.60 E-value=0.0015 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
.+.++|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998643
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.60 E-value=0.0016 Score=41.32 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=16.9
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 033088 10 KCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~ 29 (127)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999998763
No 474
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.59 E-value=0.0011 Score=45.38 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=20.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhc
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998875
No 475
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.59 E-value=0.002 Score=44.44 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=19.7
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~ 29 (127)
...+++++|++|+||||+...+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999997664
No 476
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.58 E-value=0.0012 Score=44.70 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999988753
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.56 E-value=0.0015 Score=48.17 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+.++|+.|+|||||++.+.+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 478
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.56 E-value=0.0013 Score=45.21 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
--+.++|++|+|||||+..++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998764
No 479
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.0015 Score=44.34 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 033088 10 KCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999888753
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.54 E-value=0.0017 Score=42.03 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|++-|..||||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 481
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.54 E-value=0.0014 Score=44.09 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHh
Q 033088 8 FIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~ 29 (127)
.-.++++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998775
No 482
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.53 E-value=0.0029 Score=42.77 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=19.4
Q ss_pred ceeEEEEECCCCCcHHHHHHHHh
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~ 29 (127)
..--++++|++|+||||++..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 34568899999999999998775
No 483
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.52 E-value=0.0015 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=19.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-.++++|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999988764
No 484
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.51 E-value=0.0016 Score=41.39 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
...|++.|.+||||||+...+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 485
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.50 E-value=0.0019 Score=43.62 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988765
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.50 E-value=0.00064 Score=44.55 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 033088 9 IKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..+++.|++|+|||+|+..+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999998875
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.49 E-value=0.0014 Score=44.79 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
-.+++.|++|+|||+++..+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 488
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.49 E-value=0.002 Score=40.15 Aligned_cols=23 Identities=13% Similarity=0.403 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 033088 9 IKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 9 ~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.-+++.|++|+||||+...|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999888754
No 489
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.49 E-value=0.0024 Score=41.20 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=21.1
Q ss_pred CcceeEEEEECCCCCcHHHHHHHHhc
Q 033088 5 ASRFIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 5 ~~~~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..+..-|++-|..||||||+++.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567799999999999999987753
No 490
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.48 E-value=0.0017 Score=43.90 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...+++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346899999999999999998754
No 491
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.0018 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 033088 11 CVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 11 i~iiG~~~~GKssl~~~l~~~~ 32 (127)
+.++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999988643
No 492
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0017 Score=45.50 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=21.8
Q ss_pred ceeEEEEECCCCCcHHHHHHHHhcC
Q 033088 7 RFIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 7 ~~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
.+-.+++.|+||+|||+|+..+.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999763
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.46 E-value=0.0015 Score=47.13 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.4
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 033088 10 KCVTVGDGAVGKTCMLICY 28 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l 28 (127)
-++++|++|||||||++.|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999985
No 494
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.45 E-value=0.0017 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-.+++.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 495
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.45 E-value=0.0018 Score=44.45 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.7
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...+++.|++|+|||+|+..+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999988764
No 496
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.44 E-value=0.0016 Score=45.55 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 033088 10 KCVTVGDGAVGKTCMLICYT 29 (127)
Q Consensus 10 ki~iiG~~~~GKssl~~~l~ 29 (127)
-+.|+|++|+|||||+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999775
No 497
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.44 E-value=0.0016 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
.-.+++.|++|+|||+|++.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998875
No 498
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.42 E-value=0.0021 Score=41.09 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=19.6
Q ss_pred eeEEEEECCCCCcHHHHHHHHhc
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTS 30 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~ 30 (127)
..-|++-|.+||||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999988753
No 499
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.42 E-value=0.0021 Score=42.06 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.5
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcCC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSNK 32 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~~ 32 (127)
...+++.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3578999999999999999988654
No 500
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.42 E-value=0.002 Score=44.40 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCcHHHHHHHHhcC
Q 033088 8 FIKCVTVGDGAVGKTCMLICYTSN 31 (127)
Q Consensus 8 ~~ki~iiG~~~~GKssl~~~l~~~ 31 (127)
...+++.|++|+|||+++..+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
Done!