BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033090
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
++ +DMP LQ A CA L+ + D +A +KKEFD + P WHC+VG +FGS
Sbjct: 8 IKNADMPEDLQQDAIDCANQALEKYNIEKD---IAAFIKKEFDRKHNPTWHCVVGRNFGS 64
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH F+YF I +V +LLFK+
Sbjct: 65 YVTHETHHFIYFYIGQVAVLLFKSG 89
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
++ +DM +Q + +CA L+ + D +A +KKEFD Y P WHCIVG +FGS
Sbjct: 4 IKNADMSEEMQQDSVECATQALEKYNIEKD---IAAHIKKEFDKKYNPTWHCIVGRNFGS 60
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH F+YF + +V ILLFK+
Sbjct: 61 YVTHETKHFIYFYLGQVAILLFKSG 85
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein
Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
++ +DM +Q A CA L+ + D +A +KKEFD Y P WHCIVG +FGS
Sbjct: 8 IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH F+YF + +V ILLFK+
Sbjct: 65 YVTHETRHFIYFYLGQVAILLFKSG 89
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
++ +DM +Q A CA L+ + D +A +KKEFD Y P WHCIVG +FGS
Sbjct: 10 IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH F+YF + +V ILLFK+
Sbjct: 67 YVTHETRHFIYFYLGQVAILLFKSG 91
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
Length = 89
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
++ +DM +Q + +CA L+ + D +A +KKEFD Y P WHCIVG +FGS
Sbjct: 8 IKNADMSEEMQQDSVECATQALEKYNIEKD---IAAHIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH F+YF + +V ILLFK+
Sbjct: 65 YVTHETKHFIYFYLGQVAILLFKSG 89
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
++ +DM +Q A CA L+ + D +A +KKEFD Y P WHCIVG +FGS
Sbjct: 8 IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 97 YVTHSLGGFLYFSIDKVYILLFK 119
YVTH F+YF + +V ILLFK
Sbjct: 65 YVTHETRHFIYFYLGQVAILLFK 87
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
++ +DM +Q A CA ++ + D +A +KKEFD Y P WHCIVG +FGS
Sbjct: 8 IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH F+YF + +V ILLFK+
Sbjct: 65 YVTHETKHFIYFYLGQVAILLFKSG 89
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
++ +DM +Q A CA L+ + D +A +KKEFD Y P WHCIVG +FGS
Sbjct: 10 IKNADMSEEMQQDAVDCATQALEKYNIEPD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH F+YF + +V ILLFK+
Sbjct: 67 YVTHETRHFIYFYLGQVAILLFKSG 91
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
++ +DM +Q A CA ++ + D +A +KKEFD Y P WHCIVG +FGS
Sbjct: 11 IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH F+YF + +V ILLFK+
Sbjct: 68 YVTHETKHFIYFYLGQVAILLFKSG 92
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
Length = 94
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
++ +DM +Q A CA ++ + D +A +KKEFD Y P WHCIVG +FGS
Sbjct: 13 IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 69
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH F+YF + +V ILLFK+
Sbjct: 70 YVTHETKHFIYFYLGQVAILLFKSG 94
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
V+ DM +Q A CA L + D +A +KKEFD Y P WHC+VG +FGS
Sbjct: 21 VKNVDMTEEMQIDAIDCANQALQKYNVEKD---IAAHIKKEFDRKYDPTWHCVVGRNFGS 77
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH F+YF I +V ILLFK+
Sbjct: 78 YVTHETKNFIYFYIGQVAILLFKSG 102
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTS--F 94
++ +DM +Q A CA ++ + D +A +KKEFD Y P WHCIVG S F
Sbjct: 8 IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRSGNF 64
Query: 95 GSYVTHSLGGFLYFSIDKVYILLFKTA 121
GSYVTH F+YF + +V ILLFK+
Sbjct: 65 GSYVTHETKHFIYFYLGQVAILLFKSG 91
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 96
V+ASD+ L+ ++D LD + D +A +KK+ D YG WH IVG +FGS
Sbjct: 16 VKASDITDKLKEDILTISKDALDKYQLERD---IAGTVKKQLDVKYGNTWHVIVGKNFGS 72
Query: 97 YVTHSLGGFLYFSIDKVYILLFKTA 121
YVTH G F+YF I + L+FKTA
Sbjct: 73 YVTHEKGHFVYFYIGPLAFLVFKTA 97
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 43 PLPLQNK----AFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYV 98
P+ L N+ A +R+Q+ G+LDS R L +EFD+ + GT G +
Sbjct: 121 PVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPV----QNVEGTILGEHG 176
Query: 99 THSLGGFLYFSID 111
+ F S+D
Sbjct: 177 DAQVPVFSKVSVD 189
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 43 PLPLQNK----AFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYV 98
P+ L N+ A +R+Q+ G+LDS R L +EFD+ + GT G +
Sbjct: 122 PVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPV----QNVEGTILGEHG 177
Query: 99 THSLGGFLYFSID 111
+ F S+D
Sbjct: 178 DAQVPVFSKVSVD 190
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 43 PLPLQNK----AFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVG 91
P+ L N+ A +R+Q+ G+LDS R L +EFD+ I+G
Sbjct: 122 PVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILG 174
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 43 PLPLQNK----AFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVG 91
P+ L N+ A +R+Q+ G+LDS R L +EFD+ I+G
Sbjct: 121 PVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILG 173
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 43 PLPLQNK----AFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVG 91
P+ L N+ A +R+Q+ G+LDS R L +EFD+ I+G
Sbjct: 121 PVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILG 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,130,893
Number of Sequences: 62578
Number of extensions: 105214
Number of successful extensions: 160
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 18
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)