Query 033090
Match_columns 127
No_of_seqs 117 out of 548
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:42:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03058 dynein light chain ty 100.0 9E-51 2E-55 295.1 16.6 127 1-127 1-128 (128)
2 KOG3430 Dynein light chain typ 100.0 1.2E-38 2.6E-43 217.6 11.4 88 32-121 3-90 (90)
3 PTZ00059 dynein light chain; P 100.0 1.3E-37 2.8E-42 214.0 11.8 85 34-121 6-90 (90)
4 PF01221 Dynein_light: Dynein 100.0 1.4E-36 3.1E-41 207.5 10.1 87 32-121 3-89 (89)
5 PF04155 Ground-like: Ground-l 97.3 0.0035 7.5E-08 41.3 8.4 53 66-119 23-76 (76)
6 PF05075 DUF684: Protein of un 85.2 10 0.00022 31.6 9.3 55 66-120 187-251 (345)
7 PF12006 DUF3500: Protein of u 73.0 22 0.00049 29.3 7.6 27 36-62 215-241 (313)
8 PRK00286 xseA exodeoxyribonucl 68.4 16 0.00034 31.0 5.9 56 66-125 7-66 (438)
9 COG1570 XseA Exonuclease VII, 66.9 9.4 0.0002 33.3 4.3 57 66-126 7-67 (440)
10 PF10703 MoaF: Molybdenum cofa 66.3 10 0.00022 30.9 4.2 34 85-121 182-216 (265)
11 PF15650 Tox-REase-9: Restrict 65.9 5.2 0.00011 27.6 2.1 53 37-90 28-86 (89)
12 PF13742 tRNA_anti_2: OB-fold 58.5 25 0.00054 23.9 4.5 55 67-125 4-64 (99)
13 PF08006 DUF1700: Protein of u 57.6 41 0.0009 24.9 5.9 52 10-79 3-65 (181)
14 TIGR00237 xseA exodeoxyribonuc 54.0 32 0.00069 29.5 5.3 54 67-126 2-61 (432)
15 PRK13007 succinyl-diaminopimel 51.7 89 0.0019 24.9 7.3 42 42-83 1-42 (352)
16 COG4709 Predicted membrane pro 47.0 91 0.002 24.4 6.3 54 10-81 3-67 (195)
17 smart00848 Inhibitor_I29 Cathe 47.0 32 0.0007 20.2 3.2 42 3-45 15-56 (57)
18 TIGR02084 leud 3-isopropylmala 43.6 21 0.00046 26.7 2.4 33 66-98 25-61 (156)
19 PF08246 Inhibitor_I29: Cathep 43.6 39 0.00084 20.3 3.2 42 2-45 14-56 (58)
20 PF10069 DICT: Sensory domain 42.4 29 0.00062 24.8 2.8 90 11-101 26-127 (129)
21 PLN00072 3-isopropylmalate iso 42.3 20 0.00043 29.0 2.2 59 34-97 72-142 (246)
22 PF12652 CotJB: CotJB protein; 40.6 16 0.00034 24.4 1.2 15 71-85 42-56 (78)
23 PF12362 DUF3646: DNA polymera 40.2 32 0.00069 24.6 2.7 30 66-95 47-76 (117)
24 cd03472 Rieske_RO_Alpha_BPDO_l 39.4 48 0.001 23.5 3.6 40 78-122 1-41 (128)
25 COG4831 Roadblock/LC7 domain [ 37.9 1.5E+02 0.0031 21.0 6.6 42 14-55 5-46 (109)
26 KOG4025 Putative apoptosis rel 37.8 80 0.0017 24.6 4.7 14 67-80 126-139 (207)
27 PF11144 DUF2920: Protein of u 37.6 95 0.0021 26.9 5.6 27 9-37 118-144 (403)
28 PF06457 Ectatomin: Ectatomin; 37.3 32 0.0007 19.4 1.9 14 67-80 21-34 (34)
29 KOG3091 Nuclear pore complex, 37.1 69 0.0015 28.5 4.8 69 3-77 429-499 (508)
30 PF08776 VASP_tetra: VASP tetr 36.4 64 0.0014 19.0 3.1 32 44-80 6-37 (40)
31 PF06150 ChaB: ChaB; InterPro 35.4 68 0.0015 20.0 3.4 43 40-87 7-54 (57)
32 PRK00103 rRNA large subunit me 33.5 53 0.0011 24.5 3.1 33 64-97 79-111 (157)
33 PF14900 DUF4493: Domain of un 33.1 91 0.002 24.1 4.5 37 76-112 119-160 (235)
34 PF11858 DUF3378: Domain of un 32.4 60 0.0013 21.6 3.0 21 101-121 28-48 (81)
35 PF12550 GCR1_C: Transcription 30.3 17 0.00036 23.9 -0.1 12 76-87 29-40 (81)
36 KOG1569 50S ribosomal protein 29.4 1.1E+02 0.0023 25.8 4.5 57 35-95 194-261 (323)
37 PRK00466 acetyl-lysine deacety 28.9 1.8E+02 0.0038 23.4 5.7 44 44-88 6-49 (346)
38 PF08015 Pheromone: Fungal mat 28.8 32 0.00069 21.9 1.1 13 78-90 55-69 (69)
39 cd05127 RasGAP_IQGAP_related T 28.5 85 0.0018 25.6 3.8 36 48-85 129-164 (325)
40 TIGR00246 tRNA_RlmH_YbeA rRNA 28.1 71 0.0015 23.7 3.0 33 64-98 77-109 (153)
41 PRK14023 homoaconitate hydrata 27.9 43 0.00094 25.3 1.9 33 66-98 27-63 (166)
42 cd01579 AcnA_Bact_Swivel Bacte 27.1 42 0.0009 24.1 1.6 17 81-97 45-61 (121)
43 cd03538 Rieske_RO_Alpha_AntDO 26.9 1.4E+02 0.0031 21.5 4.5 44 74-122 11-55 (146)
44 PRK06489 hypothetical protein; 26.3 38 0.00083 27.4 1.4 34 66-99 134-168 (360)
45 PF06840 DUF1241: Protein of u 24.3 50 0.0011 24.9 1.6 14 67-80 122-135 (154)
46 PF10655 DUF2482: Hypothetical 24.2 45 0.00097 23.3 1.2 47 40-95 6-65 (100)
47 cd05133 RasGAP_IQGAP1 IQGAP1 i 23.6 91 0.002 26.4 3.2 36 49-86 132-167 (360)
48 KOG2130 Phosphatidylserine-spe 23.2 66 0.0014 27.5 2.2 18 83-100 277-294 (407)
49 PRK13602 putative ribosomal pr 22.9 1.2E+02 0.0026 19.9 3.1 49 5-57 4-52 (82)
50 PRK00439 leuD 3-isopropylmalat 22.8 81 0.0018 23.6 2.5 32 66-97 26-61 (163)
51 PF08958 DUF1871: Domain of un 22.6 90 0.002 20.8 2.4 37 44-84 18-54 (79)
52 cd05498 Bromo_Brdt_II_like Bro 22.6 2.1E+02 0.0046 19.0 4.4 39 44-82 64-102 (102)
53 cd01578 AcnA_Mitochon_Swivel M 21.8 50 0.0011 24.8 1.2 17 83-99 68-84 (149)
54 PF10440 WIYLD: Ubiquitin-bind 21.8 1E+02 0.0023 19.9 2.5 43 50-95 10-52 (65)
55 TIGR00139 h_aconitase homoacon 21.7 54 0.0012 30.4 1.5 34 66-99 560-597 (712)
56 COG0655 WrbA Multimeric flavod 21.4 62 0.0013 24.4 1.7 59 40-99 59-121 (207)
57 KOG4194 Membrane glycoprotein 21.4 47 0.001 30.9 1.1 22 82-103 585-606 (873)
58 KOG2451 Aldehyde dehydrogenase 21.3 1.8E+02 0.0039 25.6 4.5 45 34-79 50-94 (503)
59 cd05392 RasGAP_Neurofibromin_l 21.0 60 0.0013 26.4 1.6 39 51-91 136-174 (323)
60 cd05503 Bromo_BAZ2A_B_like Bro 20.8 2.5E+02 0.0054 18.7 4.4 38 45-82 60-97 (97)
61 KOG2915 tRNA(1-methyladenosine 20.8 68 0.0015 26.8 1.8 34 76-109 37-71 (314)
62 PF05577 Peptidase_S28: Serine 20.8 54 0.0012 27.5 1.3 31 68-99 97-127 (434)
63 cd01056 Euk_Ferritin eukaryoti 20.6 2.1E+02 0.0046 20.6 4.3 21 2-22 46-66 (161)
64 cd03545 Rieske_RO_Alpha_OHBDO_ 20.6 2.7E+02 0.0059 20.1 4.9 45 72-121 11-57 (150)
65 cd01674 Homoaconitase_Swivel H 20.5 1E+02 0.0022 22.6 2.6 33 66-99 23-60 (129)
66 COG2021 MET2 Homoserine acetyl 20.5 1E+02 0.0022 26.4 2.9 34 65-98 127-160 (368)
67 PF08908 DUF1852: Domain of un 20.3 51 0.0011 27.4 1.0 51 32-99 69-120 (322)
68 PF01743 PolyA_pol: Poly A pol 20.2 2.5E+02 0.0054 19.6 4.5 36 72-109 29-64 (126)
69 PTZ00203 cathepsin L protease; 20.2 1.3E+02 0.0029 25.1 3.5 40 4-46 53-93 (348)
No 1
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=100.00 E-value=9e-51 Score=295.14 Aligned_cols=127 Identities=88% Similarity=1.321 Sum_probs=120.0
Q ss_pred Chh-HHHHHHHHHHHHHHHHhhhhhHhhhhccccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 033090 1 MEA-AEELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFD 79 (127)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lD 79 (127)
||. .-||+||++||+||||+++++||+...|..++.|+.+|||++||++|+++|.+|+++++...++++||.+||+.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fD 80 (128)
T PLN03058 1 MEGAELELERRSKFLSSLIQKKKAKEQQDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFD 80 (128)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhHHhhccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHh
Confidence 443 4499999999999999999999999999999999999999999999999999999998643478999999999999
Q ss_pred ccCCCceEEEEcCCceeeEEecCCcEEEEEeCCEEEEEeeeCCCCCCC
Q 033090 80 SSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLDH 127 (127)
Q Consensus 80 kkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~~~~iLlfKt~~~~~~~ 127 (127)
++|||+||||||++|||+|||++++||||++|+++||||||+.+|+|.
T Consensus 81 kkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig~~aiLLfKt~~~~~~~ 128 (128)
T PLN03058 81 SAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFKTAVEPLDQ 128 (128)
T ss_pred hhhCCceEEEECCcEEEEEEEcCCcEEEEEECCEEEEEEeccCccCCC
Confidence 999999999999999999999999999999999999999999999984
No 2
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=100.00 E-value=1.2e-38 Score=217.62 Aligned_cols=88 Identities=49% Similarity=0.856 Sum_probs=84.5
Q ss_pred ccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeC
Q 033090 32 QLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSID 111 (127)
Q Consensus 32 ~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~ 111 (127)
..++.|+.+|||++||++|+++|.+|+++|+. ++++||..||+.||++|||+||||||++|||+|||++++||||++|
T Consensus 3 ~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~--~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g 80 (90)
T KOG3430|consen 3 ERKAVVKATDMPEEMQQEAIELARQALEKFNV--IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLG 80 (90)
T ss_pred CccceEecCCCChHHHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEec
Confidence 35789999999999999999999999999985 7899999999999999999999999999999999999999999999
Q ss_pred CEEEEEeeeC
Q 033090 112 KVYILLFKTA 121 (127)
Q Consensus 112 ~~~iLlfKt~ 121 (127)
.++|||||++
T Consensus 81 ~l~illfK~~ 90 (90)
T KOG3430|consen 81 VLAILLFKCA 90 (90)
T ss_pred eEEEEEEecC
Confidence 9999999985
No 3
>PTZ00059 dynein light chain; Provisional
Probab=100.00 E-value=1.3e-37 Score=214.02 Aligned_cols=85 Identities=46% Similarity=0.853 Sum_probs=82.4
Q ss_pred ccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeCCE
Q 033090 34 NVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKV 113 (127)
Q Consensus 34 ~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~~~ 113 (127)
++.|+.+|||++||++|+++|.+|+++++ ++++||++||+.||++|||+||||||++|||+|||++++||||++|++
T Consensus 6 ~~~i~~~dM~~emq~~a~~~~~~Al~~~~---~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~~ 82 (90)
T PTZ00059 6 KAVVKNADMSEDMQQDAIDCANQALEKFN---IEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQV 82 (90)
T ss_pred ccEEEECCCCHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECCE
Confidence 56899999999999999999999999998 689999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeC
Q 033090 114 YILLFKTA 121 (127)
Q Consensus 114 ~iLlfKt~ 121 (127)
+|||||++
T Consensus 83 ~vLlfK~~ 90 (90)
T PTZ00059 83 AILLFKSG 90 (90)
T ss_pred EEEEEecC
Confidence 99999985
No 4
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=100.00 E-value=1.4e-36 Score=207.49 Aligned_cols=87 Identities=46% Similarity=0.857 Sum_probs=81.7
Q ss_pred ccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeC
Q 033090 32 QLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSID 111 (127)
Q Consensus 32 ~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~ 111 (127)
+.+++|+.+|||++|+++|+++|.+|+++++ ++++||++||+.||++|||+||||||++|||++||++++|+||+++
T Consensus 3 ~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~---~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~ 79 (89)
T PF01221_consen 3 ENKIVIKSSDMPEEMQEEAIELAKEALKKYQ---DEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIG 79 (89)
T ss_dssp SCSEEEEEEES-HHHHHHHHHHHHHHHHHCS---SHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEET
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence 3579999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred CEEEEEeeeC
Q 033090 112 KVYILLFKTA 121 (127)
Q Consensus 112 ~~~iLlfKt~ 121 (127)
+++||||||+
T Consensus 80 ~~~~li~kt~ 89 (89)
T PF01221_consen 80 NIAFLIFKTQ 89 (89)
T ss_dssp TEEEEEEEE-
T ss_pred CEEEEEEecC
Confidence 9999999985
No 5
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=97.27 E-value=0.0035 Score=41.32 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHhcccCCCceEEEEcC-CceeeEEecCCcEEEEEeCCEEEEEee
Q 033090 66 DSKRLALALKKEFDSSYGPAWHCIVGT-SFGSYVTHSLGGFLYFSIDKVYILLFK 119 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG~~WHcIVG~-~Fgs~vthe~~~fi~F~~~~~~iLlfK 119 (127)
+...+++.|.+.+.++||+.+-||++. +|.....+. ..|.-...+++..++|+
T Consensus 23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~ 76 (76)
T PF04155_consen 23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA 76 (76)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence 689999999999999999999999995 777766665 78888899999999995
No 6
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=85.16 E-value=10 Score=31.61 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHhcccCC-CceEEEEcC------Cc--eeeEEecCCcEEE-EEeCCEEEEEeee
Q 033090 66 DSKRLALALKKEFDSSYG-PAWHCIVGT------SF--GSYVTHSLGGFLY-FSIDKVYILLFKT 120 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG-~~WHcIVG~------~F--gs~vthe~~~fi~-F~~~~~~iLlfKt 120 (127)
+-.+.|..||+.||+-.- -.+-+||-. +. .+...+..+.+|. |.-|+..++||||
T Consensus 187 sn~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS 251 (345)
T PF05075_consen 187 SNEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS 251 (345)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence 457899999999999653 368888821 11 1222345555665 5679999999999
No 7
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=72.97 E-value=22 Score=29.34 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=24.1
Q ss_pred EEeeCCCCHHHHHHHHHHHHHHHhcCC
Q 033090 36 RVRASDMPLPLQNKAFKCARDQLDSMP 62 (127)
Q Consensus 36 ~V~~sDM~~emq~~ai~~a~~al~~~~ 62 (127)
=|..++|+.+.|+.+..++..-+..++
T Consensus 215 Gl~~s~Lt~~Qq~ll~~li~~y~~~~~ 241 (313)
T PF12006_consen 215 GLAVSELTADQQELLLALIKEYLGRLP 241 (313)
T ss_pred CcChhhCCHHHHHHHHHHHHHHHHhCC
Confidence 367899999999999999999998876
No 8
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=68.39 E-value=16 Score=31.03 Aligned_cols=56 Identities=23% Similarity=0.461 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEe----CCEEEEEeeeCCCCC
Q 033090 66 DSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSI----DKVYILLFKTAVEPL 125 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~----~~~~iLlfKt~~~~~ 125 (127)
+..++..+||..|+..++..| |.|. =|.+++-...++||.+ ..+.+.+|++....+
T Consensus 7 svsel~~~ik~~le~~~~~v~--v~gE--is~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~~~ 66 (438)
T PRK00286 7 SVSELNRYVKSLLERDLGQVW--VRGE--ISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSARRL 66 (438)
T ss_pred cHHHHHHHHHHHHHhhCCcEE--EEEE--eCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhhcC
Confidence 568999999999999988777 5565 1222333455789998 357899999866554
No 9
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=66.93 E-value=9.4 Score=33.31 Aligned_cols=57 Identities=25% Similarity=0.485 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeC----CEEEEEeeeCCCCCC
Q 033090 66 DSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSID----KVYILLFKTAVEPLD 126 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~----~~~iLlfKt~~~~~~ 126 (127)
+..++..+||..||..+|..| |-|. =|.+|+-+....||.+. .+...+|+....+|+
T Consensus 7 sVSeln~~ik~llE~~~~~V~--v~GE--ISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~~l~ 67 (440)
T COG1570 7 SVSELNDYIKRLLERDLGQVW--VRGE--ISNFTRPASGHLYFTLKDERAQIRCVMFKGNNRRLK 67 (440)
T ss_pred cHHHHHHHHHHHHHhcCCeEE--EEEE--ecCCccCCCccEEEEEccCCceEEEEEEcCcccccC
Confidence 468899999999999999888 3453 14456444448999983 578899999887765
No 10
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=66.34 E-value=10 Score=30.92 Aligned_cols=34 Identities=26% Similarity=0.725 Sum_probs=24.6
Q ss_pred ceEEEEcCCceeeEEecCCcEEEEEe-CCEEEEEeeeC
Q 033090 85 AWHCIVGTSFGSYVTHSLGGFLYFSI-DKVYILLFKTA 121 (127)
Q Consensus 85 ~WHcIVG~~Fgs~vthe~~~fi~F~~-~~~~iLlfKt~ 121 (127)
+|||+.|-.=|-. +.+.+-++++ .++.++.|+=.
T Consensus 182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~WrEk 216 (265)
T PF10703_consen 182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWREK 216 (265)
T ss_pred EEEEeeccccCCC---CccceEEEEecCCEEEEEEEec
Confidence 8999999544432 3467778888 58888888744
No 11
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=65.89 E-value=5.2 Score=27.57 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=31.5
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH------HHHhcccCCCceEEEE
Q 033090 37 VRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALAL------KKEFDSSYGPAWHCIV 90 (127)
Q Consensus 37 V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~I------K~~lDkkyG~~WHcIV 90 (127)
.+.--||.-.+-++++.....+=+.+ ..+.+.|..-+ |+.|...||.+|-|||
T Consensus 28 ~kEf~lpsGkR~D~id~~~k~IyELK-PnNPr~ik~G~kQl~~Y~~el~~~~G~~W~~~l 86 (89)
T PF15650_consen 28 EKEFRLPSGKRPDFIDFETKIIYELK-PNNPRAIKRGLKQLENYKQELEKIYGGGWKTRL 86 (89)
T ss_pred eeeeecCCCCcCccccCCcceEEEec-CCCHHHHHHHHHHHHHHHHHhcCccCCCeeEEe
Confidence 34445555555556655444222222 23566665433 4689999999999997
No 12
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=58.51 E-value=25 Score=23.89 Aligned_cols=55 Identities=15% Similarity=0.410 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhccc--CCCceEEEEcCCceeeEEecCCcEEEEEe----CCEEEEEeeeCCCCC
Q 033090 67 SKRLALALKKEFDSS--YGPAWHCIVGTSFGSYVTHSLGGFLYFSI----DKVYILLFKTAVEPL 125 (127)
Q Consensus 67 ~kdIA~~IK~~lDkk--yG~~WHcIVG~~Fgs~vthe~~~fi~F~~----~~~~iLlfKt~~~~~ 125 (127)
..++..+||..++.. ++..| |.|.=-+ ++.-.+.++||.+ ..+...+|++....+
T Consensus 4 Vs~l~~~ik~~le~~~~~~~vw--V~GEIs~--~~~~~~gh~YftLkD~~a~i~~~~~~~~~~~i 64 (99)
T PF13742_consen 4 VSELNNYIKDLLERDPPLPNVW--VEGEISN--LKRHSSGHVYFTLKDEEASISCVIFRSRARRI 64 (99)
T ss_pred HHHHHHHHHHHHhcCCCcCCEE--EEEEEee--cEECCCceEEEEEEcCCcEEEEEEEHHHHhhC
Confidence 578999999999998 56777 4454222 2222677788888 356888888765443
No 13
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=57.58 E-value=41 Score=24.94 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhhhHhhhhccccccEEeeCCCCHHHHHHHHHHHHHHHhcCCC-----------CCCHHHHHHHHHHHh
Q 033090 10 RSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPG-----------KLDSKRLALALKKEF 78 (127)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~-----------~~~~kdIA~~IK~~l 78 (127)
|+.||+.|.+.=+ +||++.++++++-..+-++.-.. -.+++++|+.|+...
T Consensus 3 k~efL~~L~~~L~------------------~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 3 KNEFLNELEKYLK------------------KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 6778888876554 58999999998877776654221 125678888887654
Q ss_pred c
Q 033090 79 D 79 (127)
Q Consensus 79 D 79 (127)
.
T Consensus 65 ~ 65 (181)
T PF08006_consen 65 S 65 (181)
T ss_pred h
Confidence 3
No 14
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=53.95 E-value=32 Score=29.51 Aligned_cols=54 Identities=22% Similarity=0.528 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcccCCCceEEEEcC--CceeeEEecCCcEEEEEe----CCEEEEEeeeCCCCCC
Q 033090 67 SKRLALALKKEFDSSYGPAWHCIVGT--SFGSYVTHSLGGFLYFSI----DKVYILLFKTAVEPLD 126 (127)
Q Consensus 67 ~kdIA~~IK~~lDkkyG~~WHcIVG~--~Fgs~vthe~~~fi~F~~----~~~~iLlfKt~~~~~~ 126 (127)
..++..+||..|+..|+..| |.|+ +|- .| ...++||.+ ..+...+|++...+++
T Consensus 2 Vsel~~~ik~~le~~~~~v~--V~GEisn~~---~~-~sGH~YFtLkD~~a~i~~vmf~~~~~~l~ 61 (432)
T TIGR00237 2 VSELNAQIKALLEATFLQVW--IQGEISNFT---QP-VSGHWYFTLKDENAQVRCVMFRGNNNRLK 61 (432)
T ss_pred HHHHHHHHHHHHHhhCCcEE--EEEEecCCe---eC-CCceEEEEEEcCCcEEEEEEEcChhhCCC
Confidence 35788999999999898777 4564 554 23 344689988 3578999999876653
No 15
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=51.70 E-value=89 Score=24.93 Aligned_cols=42 Identities=21% Similarity=0.099 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCC
Q 033090 42 MPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYG 83 (127)
Q Consensus 42 M~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG 83 (127)
|+.+...++++...+.++..+...++.++|++|++.|.+.+|
T Consensus 1 ~~~~~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~ 42 (352)
T PRK13007 1 MTLDLAADLAELTAALVDIPSVSGDEKALADAVEAALRALPH 42 (352)
T ss_pred CccchHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcC
Confidence 555677888888888887655444678999999999987533
No 16
>COG4709 Predicted membrane protein [Function unknown]
Probab=46.99 E-value=91 Score=24.44 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhhhHhhhhccccccEEeeCCCCHHHHHHHHHHHHHHHhcCCC-----------CCCHHHHHHHHHHHh
Q 033090 10 RSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPG-----------KLDSKRLALALKKEF 78 (127)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~-----------~~~~kdIA~~IK~~l 78 (127)
|+.|||+|.+.=+. +|++.+.+++.--.+-++.-.. -.+++|+|..++...
T Consensus 3 k~efL~eL~~yL~~------------------Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~ 64 (195)
T COG4709 3 KTEFLNELEQYLEG------------------LPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSER 64 (195)
T ss_pred HHHHHHHHHHHHHh------------------CCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHc
Confidence 78999999887763 5667777776654444332211 125678888888776
Q ss_pred ccc
Q 033090 79 DSS 81 (127)
Q Consensus 79 Dkk 81 (127)
+-+
T Consensus 65 ~~k 67 (195)
T COG4709 65 GIK 67 (195)
T ss_pred cch
Confidence 544
No 17
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=46.99 E-value=32 Score=20.16 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhhhccccccEEeeCCCCHH
Q 033090 3 AAEELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLP 45 (127)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~sDM~~e 45 (127)
+.|+..+...|..++..+.....++..--++.+. ..+||+++
T Consensus 15 ~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N-~fsDlt~e 56 (57)
T smart00848 15 EEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLN-QFADLTNE 56 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCc-ccccCCCC
Confidence 3466777799999988777653332111222332 47888764
No 18
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=43.60 E-value=21 Score=26.74 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHhcc----cCCCceEEEEcCCceeeE
Q 033090 66 DSKRLALALKKEFDS----SYGPAWHCIVGTSFGSYV 98 (127)
Q Consensus 66 ~~kdIA~~IK~~lDk----kyG~~WHcIVG~~Fgs~v 98 (127)
+..++++++-..+|. ++.+..-+|.|+||||==
T Consensus 25 ~~~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~GS 61 (156)
T TIGR02084 25 DPKELAKHCMEDLDKDFVKKVKEGDIIVAGENFGCGS 61 (156)
T ss_pred CHHHHHhhhhccCChhHHhhcCCCCEEEccCcccCCC
Confidence 456777777766664 445555455588999743
No 19
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=43.55 E-value=39 Score=20.30 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHhhhhccccccEE-eeCCCCHH
Q 033090 2 EAAEELERRSKFLNSLIQKKKAKEQQEQNDQLNVRV-RASDMPLP 45 (127)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V-~~sDM~~e 45 (127)
.+.|+..++..|..++......- ..........+ ..+||+.+
T Consensus 14 ~~~e~~~R~~~F~~N~~~I~~~N--~~~~~~~~~~~N~fsD~t~e 56 (58)
T PF08246_consen 14 SAEEEARRFAIFKENLRRIEEHN--ANGNNTYKLGLNQFSDMTPE 56 (58)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH--HTTSSSEEE-SSTTTTSSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh--cCCCCCeEEeCccccCcChh
Confidence 36788999999999998888753 12222223333 47788765
No 20
>PF10069 DICT: Sensory domain found in DIguanylate Cyclases & Two-component systems; InterPro: IPR019278 This entry, found in various cyanobacterial sensor proteins that catalyse the reaction [ATP + protein L-histidine = ADP + protein N- phospho-L-histidine], has no known function.
Probab=42.42 E-value=29 Score=24.77 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhhHhhhhccccccEEeeCCCCHH-HHHHHHHHHHHHHhcCCC----CCCHHHH----HHHHHHHhc--
Q 033090 11 SKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLP-LQNKAFKCARDQLDSMPG----KLDSKRL----ALALKKEFD-- 79 (127)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~V~~sDM~~e-mq~~ai~~a~~al~~~~~----~~~~kdI----A~~IK~~lD-- 79 (127)
+.+-..|+-++..-|..+..-.....|..+==... .+.++ +.-.+.-+.... .....+. ....--.|+
T Consensus 26 ~~~k~~L~alsr~iEd~a~~~~~~~~v~a~FQ~~s~~~~e~-~rY~~la~~~~~V~v~g~~d~~~~~~~~~~~~v~l~~~ 104 (129)
T PF10069_consen 26 SYSKRLLVALSRAIEDRAWRAGISGTVWAGFQRLSRFRQEI-DRYRQLADRSQDVYVYGVPDSPFPPPSPGVITVHLEPS 104 (129)
T ss_pred eecHHHHHHHHHHHHHHHHhcCCCCEEEEeCCChhhhHHHH-HHHHHHhhcCCcEEEEecCCcccCCCCCCcceeecCCC
Confidence 34456777788877777777665666654321111 22222 222222221110 0000110 001111133
Q ss_pred ccCCCceEEEE-cCCceeeEEec
Q 033090 80 SSYGPAWHCIV-GTSFGSYVTHS 101 (127)
Q Consensus 80 kkyG~~WHcIV-G~~Fgs~vthe 101 (127)
......|+||| |.+|.|.+...
T Consensus 105 d~L~~EWfvvv~~~~~~~~LvA~ 127 (129)
T PF10069_consen 105 DPLRREWFVVVDGPHFAAALVAR 127 (129)
T ss_pred CCceeEEEEEEECCCCeEEEEEe
Confidence 35677999998 78998877654
No 21
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=42.34 E-value=20 Score=28.99 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=32.3
Q ss_pred ccEEeeCCCCHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhcc----cC---C---CceEEEE-cCCceee
Q 033090 34 NVRVRASDMPLPLQNKAFKCARDQLDSM-PGKLDSKRLALALKKEFDS----SY---G---PAWHCIV-GTSFGSY 97 (127)
Q Consensus 34 ~i~V~~sDM~~emq~~ai~~a~~al~~~-~~~~~~kdIA~~IK~~lDk----ky---G---~~WHcIV-G~~Fgs~ 97 (127)
.+-+..-|.+.+.-.= .+.+... ++..+..++++++-..+|. +| | +.|.+|| |+||||=
T Consensus 72 rv~k~gDNIdTD~IiP-----a~~l~~~~sn~~~~~~l~~~~F~~l~~~~~~r~v~~Gd~~~~~~IIVaG~NFGcG 142 (246)
T PLN00072 72 LCFVVGDNIDTDQIIP-----AEYLTLVPSKPDEYEKLGSYALIGLPAFYKTRFVEPGEMKTKYSIIIGGENFGCG 142 (246)
T ss_pred eEEEeCCCcchhhccc-----HHHhccccccCCCHHHHHHhhhccCCcchhhcccCCCCCCCCceEEEecCcccCC
Confidence 4555566666663221 1233222 1011467888888766652 22 2 2478888 5799974
No 22
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=40.65 E-value=16 Score=24.41 Aligned_cols=15 Identities=47% Similarity=0.880 Sum_probs=12.2
Q ss_pred HHHHHHHhcccCCCc
Q 033090 71 ALALKKEFDSSYGPA 85 (127)
Q Consensus 71 A~~IK~~lDkkyG~~ 85 (127)
-+.+++.+.++|||-
T Consensus 42 ~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 42 RKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHHHHhCCC
Confidence 356889999999994
No 23
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=40.20 E-value=32 Score=24.57 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHhcccCCCceEEEEcCCce
Q 033090 66 DSKRLALALKKEFDSSYGPAWHCIVGTSFG 95 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fg 95 (127)
-..++|..|...|..-.|..|.|.+++.=|
T Consensus 47 ap~dl~~~L~~~L~~wTG~rW~V~~s~~~g 76 (117)
T PF12362_consen 47 APKDLAQRLSRKLQEWTGQRWIVSLSNEPG 76 (117)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 358999999999999999999999986644
No 24
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=39.40 E-value=48 Score=23.50 Aligned_cols=40 Identities=10% Similarity=0.282 Sum_probs=27.4
Q ss_pred hcccCCCceEEEEc-CCceeeEEecCCcEEEEEeCCEEEEEeeeCC
Q 033090 78 FDSSYGPAWHCIVG-TSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 122 (127)
Q Consensus 78 lDkkyG~~WHcIVG-~~Fgs~vthe~~~fi~F~~~~~~iLlfKt~~ 122 (127)
|++-|...|+.|.- ..+. +.+.+..+.+++..|+|||..+
T Consensus 1 ~~~i~~~~W~~v~~~~el~-----~~g~~~~~~~~~~~i~l~r~~~ 41 (128)
T cd03472 1 LERVFARSWLLLGHETHIP-----KAGDYLTTYMGEDPVIVVRQKD 41 (128)
T ss_pred CcchhhCCCeEeEEHHHCC-----CCCCEEEEEECCceEEEEECCC
Confidence 45567889998653 2331 3466777888998999998643
No 25
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=37.94 E-value=1.5e+02 Score=21.03 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=26.1
Q ss_pred HHHHHHhhhhhHhhhhccccccEEeeCCCCHHHHHHHHHHHH
Q 033090 14 LNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCAR 55 (127)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~V~~sDM~~emq~~ai~~a~ 55 (127)
|.+|+|-+-.---+.=-+.-+..--..|||++|-.-+...|.
T Consensus 5 LdeLlqi~Gv~AAGefs~DGkLv~Ykgdm~k~~A~maAkmca 46 (109)
T COG4831 5 LDELLQIKGVMAAGEFSPDGKLVEYKGDMPKEMAEMAAKMCA 46 (109)
T ss_pred HHHHhCccceeEeceeCCCCceEEeeCCCCHHHHHHHHHHHH
Confidence 566666655322222234446666788999998877766553
No 26
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=37.76 E-value=80 Score=24.56 Aligned_cols=14 Identities=43% Similarity=0.451 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcc
Q 033090 67 SKRLALALKKEFDS 80 (127)
Q Consensus 67 ~kdIA~~IK~~lDk 80 (127)
-++||+.||+-||.
T Consensus 126 IK~IASaIKkLLd~ 139 (207)
T KOG4025|consen 126 IKLIASAIKKLLDA 139 (207)
T ss_pred HHHHHHHHHHHHHH
Confidence 47899999999884
No 27
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=37.55 E-value=95 Score=26.88 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhhHhhhhccccccEE
Q 033090 9 RRSKFLNSLIQKKKAKEQQEQNDQLNVRV 37 (127)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~V 37 (127)
.--++|++.|+..| +|+--+.+.++.+
T Consensus 118 ~~~~~L~~~I~~lK--~~~~L~~d~kl~l 144 (403)
T PF11144_consen 118 QIYELLNQNITELK--EQGILPQDYKLNL 144 (403)
T ss_pred HHHHHHHHHHHHHH--hcCCCCCCcEEeE
Confidence 33455666665555 4544444444443
No 28
>PF06457 Ectatomin: Ectatomin; InterPro: IPR009458 Ectatomin is a toxin from the venom of the ant Ectatomma tuberculatum. Ectatomin can efficiently insert into the plasma membrane, where it can form channels. Ectatomin was shown to inhibit L-type calcium currents in isolated rat cardiac myocytes []. In these cells, ectatomin induces a gradual, irreversible increase in ion leakage across the membrane, which can lead to cell death. Ectatomin is comprised of two subunits, A and B, which are homologous. The structure of ectatomin reveals that each subunit consists of two alpha helices with a connecting hinge region, which form a hairpin structure that is stabilised by disulphide bridges. A disulphide bridge between the hinge regions of the two subunits links the heterodimer together, forming a closed bundle of four helices with a left-handed twist [].; GO: 0005216 ion channel activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ECI_A.
Probab=37.28 E-value=32 Score=19.36 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhcc
Q 033090 67 SKRLALALKKEFDS 80 (127)
Q Consensus 67 ~kdIA~~IK~~lDk 80 (127)
+.+||.+||+..|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T PF06457_consen 21 SGSIATMIKRKCDK 34 (34)
T ss_dssp SCCHHHHHHHHCH-
T ss_pred cccHHHHHHHHhCC
Confidence 36799999998764
No 29
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.12 E-value=69 Score=28.55 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhhhccccccEEeeCCCCHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHH
Q 033090 3 AAEELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPG--KLDSKRLALALKKE 77 (127)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~--~~~~kdIA~~IK~~ 77 (127)
+--||+.|=+-|-+++++.. .+.+...--++.-||..||++.....- +++.+..+ ..+.++|+.-|-+.
T Consensus 429 ~Pnq~k~Rl~~L~e~~r~q~-----~~~~~~~~~~iD~~~~~e~~e~lt~~~-e~l~~Lv~Ilk~d~edi~~~l~E~ 499 (508)
T KOG3091|consen 429 APNQLKARLDELYEILRMQN-----SQLKLQESYWIDFDKLIEMKEHLTQEQ-EALTKLVNILKGDQEDIKHQLIED 499 (508)
T ss_pred ChHHHHHHHHHHHHHHHhhc-----chhccccceeechhhhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHhh
Confidence 33577888777777777654 244444555678899999876655543 44444332 12556665444333
No 30
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=36.44 E-value=64 Score=19.05 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc
Q 033090 44 LPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDS 80 (127)
Q Consensus 44 ~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDk 80 (127)
+.|++++++.++.-+++.+ .+|-..|++.|-+
T Consensus 6 e~~KqEIL~EvrkEl~K~K-----~EIIeA~~~eL~r 37 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVK-----EEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhc
Confidence 3588899999998888854 6788888888754
No 31
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=35.42 E-value=68 Score=20.01 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHhcccCCCceE
Q 033090 40 SDMPLPLQNKAFKCARDQLDSMPGKLDSKRLA-----LALKKEFDSSYGPAWH 87 (127)
Q Consensus 40 sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA-----~~IK~~lDkkyG~~WH 87 (127)
..||..=|..-++....|++.|. + ++.| ..+|+...+ -|+.|.
T Consensus 7 ~~LP~~Aq~if~~afn~a~~~~~---d-e~~A~~vAw~AVk~~Y~k-~~g~W~ 54 (57)
T PF06150_consen 7 EHLPEHAQRIFRKAFNSAWEEYG---D-EERAHRVAWAAVKRKYEK-VNGRWV 54 (57)
T ss_dssp TT--SHHHHHHHHHHHHHHHH-----S-HHHHHHHHHHHHHHHEEE-SSS-EE
T ss_pred hHCCHHHHHHHHHHHHHHHHhcC---C-HhHHHHHHHHHHHHHhee-cCCEee
Confidence 46777777777788888888886 4 3333 579999999 688895
No 32
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=33.55 E-value=53 Score=24.48 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHhcccCCCceEEEEcCCceee
Q 033090 64 KLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSY 97 (127)
Q Consensus 64 ~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~ 97 (127)
..+..++|+.|.+..+... +...-|||+.||-.
T Consensus 79 ~~sS~~fA~~l~~~~~~g~-~~i~F~IGGa~G~~ 111 (157)
T PRK00103 79 QLSSEEFAQELERWRDDGR-SDVAFVIGGADGLS 111 (157)
T ss_pred cCCHHHHHHHHHHHHhcCC-ccEEEEEcCccccC
Confidence 4567899999999865532 36888899998864
No 33
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=33.10 E-value=91 Score=24.06 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=27.8
Q ss_pred HHhcccCCCceEEEEcCCceeeEEe--cCC---cEEEEEeCC
Q 033090 76 KEFDSSYGPAWHCIVGTSFGSYVTH--SLG---GFLYFSIDK 112 (127)
Q Consensus 76 ~~lDkkyG~~WHcIVG~~Fgs~vth--e~~---~fi~F~~~~ 112 (127)
..|.+.|+..|++-|...-+..+++ ... .-.||..+.
T Consensus 119 ~~f~~~f~~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~ 160 (235)
T PF14900_consen 119 DEFKKYFGSDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGE 160 (235)
T ss_pred HHHHhhhccceEEEEEccCCccEEEeeccCCCCcceEEECCC
Confidence 3466677888999996543777777 555 889999987
No 34
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=32.45 E-value=60 Score=21.63 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=16.4
Q ss_pred cCCcEEEEEeCCEEEEEeeeC
Q 033090 101 SLGGFLYFSIDKVYILLFKTA 121 (127)
Q Consensus 101 e~~~fi~F~~~~~~iLlfKt~ 121 (127)
.++..+.++.++..|.+|+|+
T Consensus 28 ~p~~~f~aK~~~~tIt~Y~SG 48 (81)
T PF11858_consen 28 PPYAVFQAKYNGVTITAYKSG 48 (81)
T ss_dssp -TTEEEEEEETTEEEEEETTS
T ss_pred CCCEEEEEeCCCeEEEEEeCC
Confidence 355566688899999999987
No 35
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=30.30 E-value=17 Score=23.94 Aligned_cols=12 Identities=25% Similarity=1.027 Sum_probs=9.9
Q ss_pred HHhcccCCCceE
Q 033090 76 KEFDSSYGPAWH 87 (127)
Q Consensus 76 ~~lDkkyG~~WH 87 (127)
..|+++||..|-
T Consensus 29 ~~le~~yG~~WR 40 (81)
T PF12550_consen 29 RSLEKKYGSKWR 40 (81)
T ss_pred HHHHHHhChhhc
Confidence 357899999996
No 36
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=29.41 E-value=1.1e+02 Score=25.81 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=35.4
Q ss_pred cEEeeCCCCHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHhcc------cCCCce-EEEEcC-Cce
Q 033090 35 VRVRASDMPLPLQNKAFKCARDQLDSMPG---KLDSKRLALALKKEFDS------SYGPAW-HCIVGT-SFG 95 (127)
Q Consensus 35 i~V~~sDM~~emq~~ai~~a~~al~~~~~---~~~~kdIA~~IK~~lDk------kyG~~W-HcIVG~-~Fg 95 (127)
-.|-+.||-.+.+. ...-.=.+||+ .....+|++.|-++..- .+++.| ||.||+ +|.
T Consensus 194 ~~vA~Pdim~~l~~----Lr~iL~~r~Pn~k~gtvg~nipemieeFk~G~~i~~d~~~~~~~~~~vGkl~mt 261 (323)
T KOG1569|consen 194 FYVAHPDIMPELNR----LRKILGPRFPNPKRGTVGRNIPEMIEEFKNGHEIKFDEERENILQIKVGKLDMT 261 (323)
T ss_pred eeeecchHHHHHHH----HHHHhcccCCCcccCccccchHHHHHHhhCCcccccccccCceeeeeeeeecCC
Confidence 55667777666544 33333344664 22245788877766554 357889 999997 664
No 37
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=28.86 E-value=1.8e+02 Score=23.40 Aligned_cols=44 Identities=11% Similarity=-0.037 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEE
Q 033090 44 LPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHC 88 (127)
Q Consensus 44 ~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHc 88 (127)
+.|.+++++...+.++--+...++.++|.+|++.|.+ .|-.++.
T Consensus 6 ~~~~~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~-~g~~~~~ 49 (346)
T PRK00466 6 ELVKQKAKELLLDLLSIYTPSGNETNATKFFEKISNE-LNLKLEI 49 (346)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-cCCeEEE
Confidence 3566777787777776544334678999999999984 4655543
No 38
>PF08015 Pheromone: Fungal mating-type pheromone; InterPro: IPR012597 This family corresponds to mating-type pheromone proteins. The homobasidiomycetes, or mushroom fungi, have arguably the most complex mating system of all known organisms. Many species possess a mating system known as bifactorial incompatibility, where two unlinked loci control the mating-type of an individual incompatibility loci (the A and B mating-type loci). Each A mating-type sublocus encodes a pair of divergently transcribed homeodomain transcription factors while the genes responsible for B mating-type activity encode lipopeptide pheromones and G-protein -coupled pheromone receptors [].; GO: 0000772 mating pheromone activity, 0016020 membrane
Probab=28.83 E-value=32 Score=21.87 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=8.4
Q ss_pred hcccCCC--ceEEEE
Q 033090 78 FDSSYGP--AWHCIV 90 (127)
Q Consensus 78 lDkkyG~--~WHcIV 90 (127)
.++..|+ +|-|||
T Consensus 55 ~Er~~~g~~~~fCVI 69 (69)
T PF08015_consen 55 FERRGGGGAGAFCVI 69 (69)
T ss_pred ccccCCCCceEEEeC
Confidence 4455554 788886
No 39
>cd05127 RasGAP_IQGAP_related This family represents IQ motif containing GTPase activating protein (IQGAP) which associated with the Ras GTP-binding protein. A primary function of IQGAP proteins is to modulate cytoskeletal architecture. There are three known IQGAP family members: IQGAP1, IQGAP2 and IQGAP3. Human IQGAP1 and IQGAP2 share 62% indentity. IQGAPs are multi-domain molecules having a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeats, a single WW domain, four IQ motifs that mediate interactions with calmodulin, and a RasGAP related domain that binds active Rho family GTPases. IQGAP is an essential regulator of cytoskeletal function. IQGAP1 negatively regulates Ras family GTPases by stimulating their intrinsic GTPase activity, the protein actually lacks GAP activity. Both IQGAP1 and IQGAP2 specifically bind to Cdc42 and Rac1, but not to RhoA. Despite of their similarities to part of the sequence of RasGAP, neither IQGAP1 nor IQGAP2 interacts with Ras. IQGA
Probab=28.48 E-value=85 Score=25.61 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCc
Q 033090 48 NKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPA 85 (127)
Q Consensus 48 ~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~ 85 (127)
+.+++.....+..+|. ..+-||+.|++.+.++|...
T Consensus 129 ~~fl~~I~~s~~~~P~--~lR~i~~~l~~~~~~kfp~~ 164 (325)
T cd05127 129 EQFLDAIISSLDKIPY--GIRYICKQIYEALQRKFPEA 164 (325)
T ss_pred HHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCCCC
Confidence 3444445555666662 56899999999999999764
No 40
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=28.06 E-value=71 Score=23.72 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeE
Q 033090 64 KLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYV 98 (127)
Q Consensus 64 ~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~v 98 (127)
..+..++|+.|.++.+.- +.=.-|||+.+|-.=
T Consensus 77 ~~sS~~fA~~l~~~~~~g--~~i~FvIGGa~G~~~ 109 (153)
T TIGR00246 77 PWTTPQLADTLEKWKTDG--RDVTLLIGGPEGLSP 109 (153)
T ss_pred cCCHHHHHHHHHHHhccC--CeEEEEEcCCCcCCH
Confidence 456789999999987654 456667899988643
No 41
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=27.92 E-value=43 Score=25.29 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHhc----ccCCCceEEEEcCCceeeE
Q 033090 66 DSKRLALALKKEFD----SSYGPAWHCIVGTSFGSYV 98 (127)
Q Consensus 66 ~~kdIA~~IK~~lD----kkyG~~WHcIVG~~Fgs~v 98 (127)
+..++++++-..+| .++.+..=+|.|+||||==
T Consensus 27 ~~~~l~~~~f~~~~p~f~~~~~~g~IIVaG~NFG~GS 63 (166)
T PRK14023 27 GEDRFHNYAFAHLRPEFASTVRPGDILVAGRNFGLGS 63 (166)
T ss_pred CHHHHHhhhccCCChhhHhhcCCCCEEEccCcccCCc
Confidence 34566666655555 3444554445588999743
No 42
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=27.07 E-value=42 Score=24.07 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=10.9
Q ss_pred cCCCceEEEEcCCceee
Q 033090 81 SYGPAWHCIVGTSFGSY 97 (127)
Q Consensus 81 kyG~~WHcIVG~~Fgs~ 97 (127)
++|..+=+|.|++|||=
T Consensus 45 ~~~~~~iiVaG~nFG~G 61 (121)
T cd01579 45 KAAGPGFIVGGENYGQG 61 (121)
T ss_pred ccCCCeEEEcCCcCCCC
Confidence 34555555558899974
No 43
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=26.94 E-value=1.4e+02 Score=21.49 Aligned_cols=44 Identities=14% Similarity=0.348 Sum_probs=30.7
Q ss_pred HHHHhcccCCCceEEEEc-CCceeeEEecCCcEEEEEeCCEEEEEeeeCC
Q 033090 74 LKKEFDSSYGPAWHCIVG-TSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 122 (127)
Q Consensus 74 IK~~lDkkyG~~WHcIVG-~~Fgs~vthe~~~fi~F~~~~~~iLlfKt~~ 122 (127)
...+++.-|...|+.|.- ... -+++.++-+.+++..|+|+|..+
T Consensus 11 ~~~e~~~i~~~~W~~v~~~~el-----p~~G~~~~~~i~g~~i~v~r~~~ 55 (146)
T cd03538 11 FALEMERLFGNAWIYVGHESQV-----PNPGDYITTRIGDQPVVMVRHTD 55 (146)
T ss_pred HHHHHHHHhhcCCEEEEEHHHC-----CCCCCEEEEEECCeeEEEEECCC
Confidence 345566667888998753 232 23577888889999999999643
No 44
>PRK06489 hypothetical protein; Provisional
Probab=26.34 E-value=38 Score=27.44 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHhcccCC-CceEEEEcCCceeeEE
Q 033090 66 DSKRLALALKKEFDSSYG-PAWHCIVGTSFGSYVT 99 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG-~~WHcIVG~~Fgs~vt 99 (127)
+..++|+.+...+....| ..+++|||.|+|+.+.
T Consensus 134 ~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vA 168 (360)
T PRK06489 134 DYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHA 168 (360)
T ss_pred cHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHH
Confidence 346777777666533344 5677899999998765
No 45
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=24.34 E-value=50 Score=24.88 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhcc
Q 033090 67 SKRLALALKKEFDS 80 (127)
Q Consensus 67 ~kdIA~~IK~~lDk 80 (127)
-++||..||+-||.
T Consensus 122 IK~IAsaIK~lLdA 135 (154)
T PF06840_consen 122 IKEIASAIKKLLDA 135 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999999995
No 46
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=24.24 E-value=45 Score=23.34 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc-------------ccCCCceEEEEcCCce
Q 033090 40 SDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFD-------------SSYGPAWHCIVGTSFG 95 (127)
Q Consensus 40 sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lD-------------kkyG~~WHcIVG~~Fg 95 (127)
-||+++...+++. ++.. ..=++|..|+++=+ --|-+.=||++|.-|+
T Consensus 6 KdMTqeelr~lls------eK~~---ELydL~~eI~kETeFdillfS~igv~~GD~~~ss~~alG~~~~ 65 (100)
T PF10655_consen 6 KDMTQEELRDLLS------EKNG---ELYDLANEIDKETEFDILLFSTIGVSNGDFISSSHCALGNPFG 65 (100)
T ss_pred hhhhHHHHHHHHH------HhhH---HHHHHHHHhcccceeeeeeeeeeccccCccccccchhhccHHH
Confidence 4676655444433 2222 34478888886533 2345567888887665
No 47
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=23.63 E-value=91 Score=26.42 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCce
Q 033090 49 KAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAW 86 (127)
Q Consensus 49 ~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~W 86 (127)
..++...+.+.++|. ..+-||+.|++.+.++|....
T Consensus 132 ~fl~~I~~S~~~~P~--~iR~ick~i~~~~~~kFP~~~ 167 (360)
T cd05133 132 KFLSAIVSSVDKIPY--GMRFIAKVLKDSLHEKFPDAG 167 (360)
T ss_pred HHHHHHHHhHHhCCH--HHHHHHHHHHHHHHHHCCCCc
Confidence 334444445566662 468999999999999998766
No 48
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=23.22 E-value=66 Score=27.51 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=14.0
Q ss_pred CCceEEEEcCCceeeEEe
Q 033090 83 GPAWHCIVGTSFGSYVTH 100 (127)
Q Consensus 83 G~~WHcIVG~~Fgs~vth 100 (127)
|+.||||+--...-.||+
T Consensus 277 ~GWWHvVlNle~TIAiTq 294 (407)
T KOG2130|consen 277 SGWWHVVLNLEPTIAITQ 294 (407)
T ss_pred CCeEEEEeccCceeeeee
Confidence 678999998766666665
No 49
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=22.94 E-value=1.2e+02 Score=19.94 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhhhccccccEEeeCCCCHHHHHHHHHHHHHH
Q 033090 5 EELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQ 57 (127)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~sDM~~emq~~ai~~a~~a 57 (127)
|+|.++.++..-.-+.-++= ..++.+..|+..|-++.....+...|.+.
T Consensus 4 ~~~~ragkl~~G~~~v~kai----~~gkaklViiA~D~~~~~~~~i~~~c~~~ 52 (82)
T PRK13602 4 EKVSQAKSIVIGTKQTVKAL----KRGSVKEVVVAEDADPRLTEKVEALANEK 52 (82)
T ss_pred HHHHhcCCEEEcHHHHHHHH----HcCCeeEEEEECCCCHHHHHHHHHHHHHc
Confidence 44555554444444443321 23567899999999999999998888764
No 50
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=22.81 E-value=81 Score=23.65 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHhcccCC---CceEEEE-cCCceee
Q 033090 66 DSKRLALALKKEFDSSYG---PAWHCIV-GTSFGSY 97 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG---~~WHcIV-G~~Fgs~ 97 (127)
+...+++++-..+|..|- +..++|| |+||||=
T Consensus 26 ~~~~l~~~~f~~~~p~f~~~~~~g~IiVaG~NfG~G 61 (163)
T PRK00439 26 DPQELAKHCMEDLDPEFAKKVKPGDIIVAGKNFGCG 61 (163)
T ss_pred CHHHHHHHHhccCCcchHhhcCCceEEEeCCcccCC
Confidence 456777777777664331 1347887 6799974
No 51
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=22.63 E-value=90 Score=20.80 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCC
Q 033090 44 LPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGP 84 (127)
Q Consensus 44 ~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~ 84 (127)
++--.++.++ ..++...+ +...+|+.|..-|..-||.
T Consensus 18 deY~~Ei~~I-v~~v~~~~---~~~~LA~~Iq~If~~SF~e 54 (79)
T PF08958_consen 18 DEYDTEINDI-VQAVHEND---DPEELAKKIQSIFEFSFGE 54 (79)
T ss_dssp GGGHHHHHHH-HHHHTT-S----HHHHHHHHHHHHHHHHSS
T ss_pred cccHHHHHHH-HHHHHhCC---CHHHHHHHHHHHHHHHHcc
Confidence 3444555444 45555555 7899999999999888775
No 52
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=22.60 E-value=2.1e+02 Score=19.01 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccC
Q 033090 44 LPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSY 82 (127)
Q Consensus 44 ~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkky 82 (127)
.+...++--+...|..-++.....-..|..|++.|+++|
T Consensus 64 ~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 64 QEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 345555556666666554432234577888888888764
No 53
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=21.77 E-value=50 Score=24.78 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=12.3
Q ss_pred CCceEEEEcCCceeeEE
Q 033090 83 GPAWHCIVGTSFGSYVT 99 (127)
Q Consensus 83 G~~WHcIVG~~Fgs~vt 99 (127)
|-.|-+|.|++||+==|
T Consensus 68 g~~~iIVaG~nyG~GSS 84 (149)
T cd01578 68 GIKWVVIGDENYGEGSS 84 (149)
T ss_pred CCCeEEEccCccCCCCc
Confidence 55787777899996433
No 54
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=21.76 E-value=1e+02 Score=19.91 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCce
Q 033090 50 AFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFG 95 (127)
Q Consensus 50 ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fg 95 (127)
=++.|..++..++ ...+.|-.-||+-| +-||+.|--|=..+|.
T Consensus 10 R~daA~dam~~lG--~~~~~v~~vl~~LL-~lY~~nW~lIEed~Y~ 52 (65)
T PF10440_consen 10 RIDAALDAMRQLG--FSKKQVRPVLKNLL-KLYDGNWELIEEDNYR 52 (65)
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHH-HHHcCCchhhhcccHH
Confidence 3566778888877 45566666666655 4678889877655553
No 55
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=21.70 E-value=54 Score=30.41 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHhcccCCCce---EEEE-cCCceeeEE
Q 033090 66 DSKRLALALKKEFDSSYGPAW---HCIV-GTSFGSYVT 99 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG~~W---HcIV-G~~Fgs~vt 99 (127)
+.+++|+++-+.+|..|...+ .+|| |+||||==|
T Consensus 560 ~~~~l~~~~~~~~dp~f~~~~~~g~iiVaG~NfG~GSS 597 (712)
T TIGR00139 560 PKEKMAQVCMENYDAEFRTKAHEGDILVSGFNFGCGSS 597 (712)
T ss_pred CHHHHHHhhccCCCcchhhcCCCCCEEEeCCccCCCCc
Confidence 567899999988887665444 3777 679997433
No 56
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=21.43 E-value=62 Score=24.43 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHHHhcccCCCceE--EEEcCCceeeEE
Q 033090 40 SDMPLPLQNKAFKCARDQ--LDSMPGKLDSKRLALALKKEFDSSYGPAWH--CIVGTSFGSYVT 99 (127)
Q Consensus 40 sDM~~emq~~ai~~a~~a--l~~~~~~~~~kdIA~~IK~~lDkkyG~~WH--cIVG~~Fgs~vt 99 (127)
|.+++++.+++.+...+| +=- ..+.....+...+|..+|+-+++.|. -..|+..+..++
T Consensus 59 c~~~dD~~~~i~~~l~~aD~iI~-gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~ 121 (207)
T COG0655 59 CVIKDDDMNEIYEKLLEADGIIF-GSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVS 121 (207)
T ss_pred CCCCcccHHHHHHHHHHCCEEEE-eCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEE
Confidence 556655555555544443 111 11234467999999999998898888 344555555544
No 57
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=21.43 E-value=47 Score=30.90 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=18.3
Q ss_pred CCCceEEEEcCCceeeEEecCC
Q 033090 82 YGPAWHCIVGTSFGSYVTHSLG 103 (127)
Q Consensus 82 yG~~WHcIVG~~Fgs~vthe~~ 103 (127)
-.+..||||..+|||.+++-.+
T Consensus 585 d~grYQCVvtN~FGStysqk~K 606 (873)
T KOG4194|consen 585 DEGRYQCVVTNHFGSTYSQKAK 606 (873)
T ss_pred cCceEEEEEecccCcchhheeE
Confidence 3678999999999999887543
No 58
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=21.29 E-value=1.8e+02 Score=25.63 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=34.8
Q ss_pred ccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 033090 34 NVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFD 79 (127)
Q Consensus 34 ~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lD 79 (127)
.+.=+-.||+-+.-+++++.|.+|+..|.+ .+.++=.+-|+++.|
T Consensus 50 eii~~V~~~~V~e~~kAI~aA~EaF~s~~~-~takeRs~lLrkwy~ 94 (503)
T KOG2451|consen 50 EIIGKVADMTVEEAEKAIDAAYEAFKSYRN-LTAKERSALLRKWYE 94 (503)
T ss_pred chhhcccCCcHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHH
Confidence 444567999999999999999999999874 345666666666554
No 59
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=21.01 E-value=60 Score=26.44 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEc
Q 033090 51 FKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVG 91 (127)
Q Consensus 51 i~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG 91 (127)
++...+.+..+|. ..+.||+.|++.+.++|...+.-+||
T Consensus 136 l~~I~~s~~~~P~--~lr~i~~~l~~~v~~kfp~~~~~~Vg 174 (323)
T cd05392 136 IDAIISSLDRFPP--ELREICHHIYEVVSEKFPDSALSAVG 174 (323)
T ss_pred HHHHHHhHHhCCH--HHHHHHHHHHHHHHHHCCCchHHHHH
Confidence 3334445566662 56899999999999999876655555
No 60
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.81 E-value=2.5e+02 Score=18.69 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccC
Q 033090 45 PLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSY 82 (127)
Q Consensus 45 emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkky 82 (127)
+...++--+...|..-.+.....-..|..|++.|+++|
T Consensus 60 ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 60 EFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 34445555556665544321223466788888887764
No 61
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=20.78 E-value=68 Score=26.84 Aligned_cols=34 Identities=38% Similarity=0.730 Sum_probs=27.6
Q ss_pred HHhcccCCCceEE-EEcCCceeeEEecCCcEEEEE
Q 033090 76 KEFDSSYGPAWHC-IVGTSFGSYVTHSLGGFLYFS 109 (127)
Q Consensus 76 ~~lDkkyG~~WHc-IVG~~Fgs~vthe~~~fi~F~ 109 (127)
..|..+||..=|- |||+-||+-++-..|.|+|..
T Consensus 37 ~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~vylL 71 (314)
T KOG2915|consen 37 GTFQTRYGALPHSDIIGKPYGSKVASSKGKFVYLL 71 (314)
T ss_pred ceeeccccccchhheecCCccceeeecCCcEEEEe
Confidence 3457889998774 689999999999888887753
No 62
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=20.76 E-value=54 Score=27.45 Aligned_cols=31 Identities=19% Similarity=0.519 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcccCCCceEEEEcCCceeeEE
Q 033090 68 KRLALALKKEFDSSYGPAWHCIVGTSFGSYVT 99 (127)
Q Consensus 68 kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vt 99 (127)
...++++|..++..=...| +++|++||..++
T Consensus 97 a~F~~~~~~~~~~~~~~pw-I~~GgSY~G~La 127 (434)
T PF05577_consen 97 AYFIRYVKKKYNTAPNSPW-IVFGGSYGGALA 127 (434)
T ss_dssp HHHHHHHHHHTTTGCC--E-EEEEETHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCE-EEECCcchhHHH
Confidence 3445566655543333455 667999986543
No 63
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=20.60 E-value=2.1e+02 Score=20.62 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 033090 2 EAAEELERRSKFLNSLIQKKK 22 (127)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (127)
+|+||++-+.++.+-|+.+.-
T Consensus 46 ~a~eE~~HA~~l~~~i~~rgg 66 (161)
T cd01056 46 LSDEEREHAEKLIKYQNKRGG 66 (161)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 589999999999999987765
No 64
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=20.57 E-value=2.7e+02 Score=20.15 Aligned_cols=45 Identities=9% Similarity=0.219 Sum_probs=31.2
Q ss_pred HHHHHHhcccCC-CceEEEEcC-CceeeEEecCCcEEEEEeCCEEEEEeeeC
Q 033090 72 LALKKEFDSSYG-PAWHCIVGT-SFGSYVTHSLGGFLYFSIDKVYILLFKTA 121 (127)
Q Consensus 72 ~~IK~~lDkkyG-~~WHcIVG~-~Fgs~vthe~~~fi~F~~~~~~iLlfKt~ 121 (127)
+....++++-|. ..|+.|.-. .. -+++.++-+.+++..++|+|..
T Consensus 11 ~~~~~E~~~if~~~~W~~v~~~~el-----~~~g~~~~~~i~g~~iiv~r~~ 57 (150)
T cd03545 11 AYFDREQERIFRGKTWSYVGLEAEI-----PNAGDFKSTFVGDTPVVVTRAE 57 (150)
T ss_pred HHHHHHHHhhhCCCceEEEEEHHHC-----CCCCCEEEEEECCceEEEEECC
Confidence 445567777785 899998742 22 1346677788888888888853
No 65
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=20.54 E-value=1e+02 Score=22.59 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHhcccC----CCceEEEE-cCCceeeEE
Q 033090 66 DSKRLALALKKEFDSSY----GPAWHCIV-GTSFGSYVT 99 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkky----G~~WHcIV-G~~Fgs~vt 99 (127)
+.+++|+++-+.+|..| .+. .+|| |++|||==|
T Consensus 23 ~~e~la~~~~e~~dp~f~~~v~~g-dilVaG~nFG~GSS 60 (129)
T cd01674 23 TPEKMAEVCMENYDSEFSTKTKQG-DILVSGFNFGTGSS 60 (129)
T ss_pred CHHHHHHhhcccCCchhhhcCCCC-CEEEeCCccCCCCc
Confidence 45677777777776544 222 5666 679997544
No 66
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=20.48 E-value=1e+02 Score=26.38 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHhcccCCCceEEEEcCCceeeE
Q 033090 65 LDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYV 98 (127)
Q Consensus 65 ~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~v 98 (127)
.+.+|++..-+.-+|.-==..|.+|||+|+|...
T Consensus 127 ~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMq 160 (368)
T COG2021 127 ITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQ 160 (368)
T ss_pred ccHHHHHHHHHHHHHhcCcceEeeeeccChHHHH
Confidence 4567777666655666656799999999999754
No 67
>PF08908 DUF1852: Domain of unknown function (DUF1852); InterPro: IPR015004 This group of proteins are functionally uncharacterised.
Probab=20.35 E-value=51 Score=27.36 Aligned_cols=51 Identities=27% Similarity=0.432 Sum_probs=35.6
Q ss_pred ccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHhcccCCCceEEEEcCCceeeEE
Q 033090 32 QLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALK-KEFDSSYGPAWHCIVGTSFGSYVT 99 (127)
Q Consensus 32 ~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK-~~lDkkyG~~WHcIVG~~Fgs~vt 99 (127)
+++++|++.||.-+ ..-+.+| +-+-|| .-+|++-|..--=|||.+|.|+|.
T Consensus 69 sveLeIiSv~~~i~----------~~~~~fP-------~IEiLkt~IvD~kt~~rieGivGNnFSSYVR 120 (322)
T PF08908_consen 69 SVELEIISVEMDIE----------GNGDTFP-------LIEILKTNIVDHKTNERIEGIVGNNFSSYVR 120 (322)
T ss_pred EEEEEEEEEEEEec----------cCCCCcc-------eEEEeeccEEecCCCceecceeccccccccc
Confidence 57899999999762 1112233 112333 347899999999999999999986
No 68
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=20.24 E-value=2.5e+02 Score=19.56 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEE
Q 033090 72 LALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFS 109 (127)
Q Consensus 72 ~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~ 109 (127)
..+.+.|.++++..|++ |+.|+..--+..+..+.+.
T Consensus 29 ~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~di~ 64 (126)
T PF01743_consen 29 EEFAKLLAKKLGGVFVV--GKRFGTVRVVFGGGSIDIA 64 (126)
T ss_dssp HHHHHHHCTTCCEEEEE--ETTTTEEEEEETTCEEEEE
T ss_pred HHHHHHHHhhccccccc--ccccceeeecCCCcccccc
Confidence 44556677777887777 9999987666666555443
No 69
>PTZ00203 cathepsin L protease; Provisional
Probab=20.24 E-value=1.3e+02 Score=25.10 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhhccccccEE-eeCCCCHHH
Q 033090 4 AEELERRSKFLNSLIQKKKAKEQQEQNDQLNVRV-RASDMPLPL 46 (127)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V-~~sDM~~em 46 (127)
.||..|++.|..|+........+ +..-..-+ ..+||+++.
T Consensus 53 ~E~~~R~~iF~~N~~~I~~~N~~---~~~~~lg~N~FaDlT~eE 93 (348)
T PTZ00203 53 TEEQQRLANFERNLELMREHQAR---NPHARFGITKFFDLSEAE 93 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---CCCeEEeccccccCCHHH
Confidence 57888999999999888764222 22222222 689999874
Done!