Query 033090
Match_columns 127
No_of_seqs 117 out of 548
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ds1_A Dynein light chain 1, c 100.0 5.6E-40 1.9E-44 227.7 9.6 90 29-121 8-97 (97)
2 3rjs_A Dynein light chain moto 100.0 5.1E-40 1.7E-44 224.5 8.5 86 33-121 4-89 (89)
3 1yo3_A Dynein light chain 1; s 100.0 8.2E-39 2.8E-43 223.7 10.7 87 32-121 16-102 (102)
4 1eci_A Ectatomin; pore-forming 60.8 19 0.00064 19.8 4.7 33 43-80 4-36 (37)
5 1use_A VAsp, vasodilator-stimu 49.7 16 0.00056 21.2 2.9 34 44-82 10-43 (45)
6 1t5q_A Gastric inhibitory poly 43.1 14 0.00047 19.7 1.8 13 8-20 17-29 (30)
7 1eci_B Ectatomin; pore-forming 35.8 14 0.00048 20.0 1.0 14 67-80 21-34 (34)
8 3k6g_A Telomeric repeat-bindin 34.4 10 0.00036 26.0 0.5 23 66-88 41-63 (111)
9 3e9v_A Protein BTG2; B-cell tr 31.3 25 0.00086 24.3 2.1 20 68-87 29-48 (120)
10 3i1i_A Homoserine O-acetyltran 29.8 16 0.00056 26.7 1.0 34 66-99 128-161 (377)
11 1wj7_A Hypothetical protein (R 29.2 27 0.00091 23.7 1.8 35 53-92 56-91 (104)
12 2b61_A Homoserine O-acetyltran 28.1 24 0.00082 26.1 1.6 34 66-99 135-168 (377)
13 3gzx_A Biphenyl dioxygenase su 27.5 1.3E+02 0.0044 24.8 6.1 44 74-122 46-90 (457)
14 4ebb_A Dipeptidyl peptidase 2; 25.1 51 0.0017 27.0 3.2 29 69-99 114-142 (472)
15 2bmo_A Oxygenase-alpha NBDO; n 25.0 1.4E+02 0.0049 24.0 5.9 43 75-122 26-69 (447)
16 3qj3_A Cathepsin L-like protei 24.2 62 0.0021 25.5 3.4 44 3-47 36-82 (331)
17 1wgn_A UBAP1, ubiquitin associ 23.2 89 0.003 19.3 3.3 29 52-82 34-62 (63)
18 3kdq_A Uncharacterized conserv 22.1 2.1E+02 0.0073 20.2 5.8 51 1-58 4-54 (154)
19 3vba_A Isopropylmalate/citrama 22.0 31 0.0011 25.3 1.2 32 66-97 31-66 (176)
20 2jt1_A PEFI protein; solution 21.8 72 0.0025 19.9 2.8 32 42-73 1-33 (77)
21 3vca_A Ring-hydroxylating diox 21.8 1.8E+02 0.0063 23.5 5.9 45 73-122 31-76 (412)
22 1to0_A Hypothetical UPF0247 pr 21.4 1.1E+02 0.0036 22.1 4.0 32 65-97 83-114 (167)
23 2b1x_A Naphthalene dioxygenase 21.4 2E+02 0.0067 23.4 6.1 43 75-122 35-78 (470)
24 1ns5_A Hypothetical protein YB 20.9 1E+02 0.0034 21.9 3.7 32 64-97 78-109 (155)
25 1qwg_A PSL synthase;, (2R)-pho 20.6 2E+02 0.007 22.1 5.7 60 31-93 100-171 (251)
26 2l63_A GLP-2, glucagon-like pe 20.3 66 0.0022 17.4 2.0 14 8-21 17-30 (33)
No 1
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-40 Score=227.71 Aligned_cols=90 Identities=40% Similarity=0.694 Sum_probs=84.5
Q ss_pred hccccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEE
Q 033090 29 QNDQLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYF 108 (127)
Q Consensus 29 ~~~~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F 108 (127)
++.+.+++|+.+|||++||++|+++|.+|+++++ ++++||++||+.||++|||+||||||++|||+|||++++||||
T Consensus 8 ~~~~~k~~I~~~DM~~emq~~a~~~a~~al~~~~---~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF 84 (97)
T 4ds1_A 8 DENKSTPIVKASDITDKLKEDILTISKDALDKYQ---LERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYF 84 (97)
T ss_dssp ----CCCEEEEEEECHHHHHHHHHHHHHHHHHCS---SHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEE
T ss_pred cccCCccEEEECCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEE
Confidence 4557899999999999999999999999999998 7899999999999999999999999999999999999999999
Q ss_pred EeCCEEEEEeeeC
Q 033090 109 SIDKVYILLFKTA 121 (127)
Q Consensus 109 ~~~~~~iLlfKt~ 121 (127)
++|+++||||||+
T Consensus 85 ~~g~~aiLlfKtg 97 (97)
T 4ds1_A 85 YIGPLAFLVFKTA 97 (97)
T ss_dssp EETTEEEEEEECC
T ss_pred EECCEEEEEEecC
Confidence 9999999999986
No 2
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=5.1e-40 Score=224.54 Aligned_cols=86 Identities=44% Similarity=0.816 Sum_probs=83.6
Q ss_pred cccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeCC
Q 033090 33 LNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDK 112 (127)
Q Consensus 33 ~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~~ 112 (127)
.++.|+.+|||++||++|+++|.+|+++++ ++++||++||+.||++|||+||||||++|||+|||++++||||++|+
T Consensus 4 ~k~~i~~~dM~~emq~~a~~~a~~al~~~~---~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~ 80 (89)
T 3rjs_A 4 RKAVIKNADMPEDLQQDAIDCANQALEKYN---IEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQ 80 (89)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETT
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECC
Confidence 378999999999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeC
Q 033090 113 VYILLFKTA 121 (127)
Q Consensus 113 ~~iLlfKt~ 121 (127)
++||||||+
T Consensus 81 ~~iLlfKtg 89 (89)
T 3rjs_A 81 VAVLLFKSG 89 (89)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecC
Confidence 999999996
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=8.2e-39 Score=223.69 Aligned_cols=87 Identities=45% Similarity=0.798 Sum_probs=83.2
Q ss_pred ccccEEeeCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCCceEEEEcCCceeeEEecCCcEEEEEeC
Q 033090 32 QLNVRVRASDMPLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSID 111 (127)
Q Consensus 32 ~~~i~V~~sDM~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vthe~~~fi~F~~~ 111 (127)
..++.|+.+|||++||++|+++|.+|+++++ ++++||++||+.||++|||+||||||++|||+|||++++||||++|
T Consensus 16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~---~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g 92 (102)
T 1yo3_A 16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYN---VEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIG 92 (102)
T ss_dssp --CCCEEETTSCHHHHHHHHHHHHHHHHHCS---SHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEET
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEEC
Confidence 4588999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred CEEEEEeeeC
Q 033090 112 KVYILLFKTA 121 (127)
Q Consensus 112 ~~~iLlfKt~ 121 (127)
+++||||||+
T Consensus 93 ~~aiLlfKt~ 102 (102)
T 1yo3_A 93 QVAILLFKSG 102 (102)
T ss_dssp TEEEEEEECC
T ss_pred CEEEEEEecC
Confidence 9999999985
No 4
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=60.80 E-value=19 Score=19.77 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc
Q 033090 43 PLPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDS 80 (127)
Q Consensus 43 ~~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDk 80 (127)
|...-+.++-....-.+++ +.+||.+||+..|+
T Consensus 4 pkkiweticpt~~~~akkc-----~g~iat~ik~~c~k 36 (37)
T 1eci_A 4 PKKIWETVCPTVEPWAKKC-----SGDIATYIKRECGK 36 (37)
T ss_dssp CHHHHHHHHHHHHHHHHTB-----CHHHHHHHHHHHHC
T ss_pred hHHHHHHhCcchHHHHHHc-----cchHHHHHHHHhcc
Confidence 3344445555444445554 48999999999875
No 5
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=49.72 E-value=16 Score=21.24 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccC
Q 033090 44 LPLQNKAFKCARDQLDSMPGKLDSKRLALALKKEFDSSY 82 (127)
Q Consensus 44 ~emq~~ai~~a~~al~~~~~~~~~kdIA~~IK~~lDkky 82 (127)
+.+++++++..+.-+++.+ .+|-..|+..|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K-----~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK-----EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcC
Confidence 3578899999999888855 789999999998763
No 6
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=43.07 E-value=14 Score=19.68 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHh
Q 033090 8 ERRSKFLNSLIQK 20 (127)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (127)
..+++|++.|++.
T Consensus 17 ~~ak~fv~wLl~~ 29 (30)
T 1t5q_A 17 IHQQDFVNWLLAQ 29 (30)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC
Confidence 4678999999985
No 7
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=35.75 E-value=14 Score=19.97 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcc
Q 033090 67 SKRLALALKKEFDS 80 (127)
Q Consensus 67 ~kdIA~~IK~~lDk 80 (127)
+.+||.+||+..|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T 1eci_B 21 EGSIATMIKKKCDK 34 (34)
T ss_dssp STTHHHHHHHHSCC
T ss_pred cccHHHHHHHHhCC
Confidence 46899999998774
No 8
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=34.44 E-value=10 Score=25.96 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHhcccCCCceEE
Q 033090 66 DSKRLALALKKEFDSSYGPAWHC 88 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG~~WHc 88 (127)
+......+|-.-.-..-+|.|||
T Consensus 41 el~at~~fL~~~~r~dg~PiWsr 63 (111)
T 3k6g_A 41 ELEATSAFLASGQRADGYPIWSR 63 (111)
T ss_dssp CHHHHHHHHHHSSCTTSCCCCCH
T ss_pred cHHHHHHHHhCCCcCCCCcceee
Confidence 44444555555444456899987
No 9
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=31.35 E-value=25 Score=24.28 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcccCCCceE
Q 033090 68 KRLALALKKEFDSSYGPAWH 87 (127)
Q Consensus 68 kdIA~~IK~~lDkkyG~~WH 87 (127)
...|+.|...|-.+|.+.|+
T Consensus 29 ~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 29 KVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp HHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 45677788888888888887
No 10
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=29.79 E-value=16 Score=26.71 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHhcccCCCceEEEEcCCceeeEE
Q 033090 66 DSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT 99 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vt 99 (127)
+..++|..|...+|..-....+++||.|+|+.++
T Consensus 128 ~~~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia 161 (377)
T 3i1i_A 128 TFLDVARMQCELIKDMGIARLHAVMGPSAGGMIA 161 (377)
T ss_dssp CHHHHHHHHHHHHHHTTCCCBSEEEEETHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHH
Confidence 4678888888888765445666799999998776
No 11
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.18 E-value=27 Score=23.72 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhcccC-CCceEEEEcC
Q 033090 53 CARDQLDSMPGKLDSKRLALALKKEFDSSY-GPAWHCIVGT 92 (127)
Q Consensus 53 ~a~~al~~~~~~~~~kdIA~~IK~~lDkky-G~~WHcIVG~ 92 (127)
.|+.||..+. .|++..|..-|+..- .+.|.++.++
T Consensus 56 eAr~AL~~~n-----gDl~~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 56 ECVIALHDCN-----GDVNRAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHHT-----SCHHHHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHHcC-----CCHHHHHHHHHhCCCcCCceeeeccc
Confidence 4788888865 346667777776653 5689999874
No 12
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=28.07 E-value=24 Score=26.09 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHhcccCCCceEEEEcCCceeeEE
Q 033090 66 DSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT 99 (127)
Q Consensus 66 ~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vt 99 (127)
+..++|+.|...++.--....+++||.|+|+.++
T Consensus 135 ~~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia 168 (377)
T 2b61_A 135 VVQDIVKVQKALLEHLGISHLKAIIGGSFGGMQA 168 (377)
T ss_dssp CHHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCcceeEEEEEChhHHHH
Confidence 5688888888888765445666799999998876
No 13
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=27.47 E-value=1.3e+02 Score=24.84 Aligned_cols=44 Identities=14% Similarity=0.367 Sum_probs=30.9
Q ss_pred HHHHhcccCCCceEEEEc-CCceeeEEecCCcEEEEEeCCEEEEEeeeCC
Q 033090 74 LKKEFDSSYGPAWHCIVG-TSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 122 (127)
Q Consensus 74 IK~~lDkkyG~~WHcIVG-~~Fgs~vthe~~~fi~F~~~~~~iLlfKt~~ 122 (127)
...++++-|+..|++|.- .... +++.++-+.+++..|+|||..+
T Consensus 46 ~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~~~~vvv~R~~d 90 (457)
T 3gzx_A 46 YQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYMGEDPVIMVRQKD 90 (457)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEECCEEEEEEECCC
Confidence 345677778999999863 2321 2455667788999999999754
No 14
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=25.12 E-value=51 Score=27.03 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcccCCCceEEEEcCCceeeEE
Q 033090 69 RLALALKKEFDSSYGPAWHCIVGTSFGSYVT 99 (127)
Q Consensus 69 dIA~~IK~~lDkkyG~~WHcIVG~~Fgs~vt 99 (127)
.++++||+.+... ...| +++|++||..++
T Consensus 114 ~fi~~~k~~~~~~-~~pw-I~~GGSY~G~La 142 (472)
T 4ebb_A 114 ELLRALRRDLGAQ-DAPA-IAFGGSYGGMLS 142 (472)
T ss_dssp HHHHHHHHHTTCT-TCCE-EEEEETHHHHHH
T ss_pred HHHHHHHhhcCCC-CCCE-EEEccCccchhh
Confidence 4455666665433 3568 778999986543
No 15
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=25.05 E-value=1.4e+02 Score=23.96 Aligned_cols=43 Identities=9% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHhcccCCCceEEEEc-CCceeeEEecCCcEEEEEeCCEEEEEeeeCC
Q 033090 75 KKEFDSSYGPAWHCIVG-TSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 122 (127)
Q Consensus 75 K~~lDkkyG~~WHcIVG-~~Fgs~vthe~~~fi~F~~~~~~iLlfKt~~ 122 (127)
..+++.-|...|++|.- .... +++.++-+.+++..|+|||..+
T Consensus 26 ~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~~ 69 (447)
T 2bmo_A 26 QHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQND 69 (447)
T ss_dssp HHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHhhccCCeEEeEHHHCC-----CCCCeEEEEECCeeEEEEECCC
Confidence 45566667889999853 2221 2466777889999999999654
No 16
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0
Probab=24.16 E-value=62 Score=25.46 Aligned_cols=44 Identities=25% Similarity=0.161 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhh---hhccccccEEeeCCCCHHHH
Q 033090 3 AAEELERRSKFLNSLIQKKKAKEQQ---EQNDQLNVRVRASDMPLPLQ 47 (127)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~V~~sDM~~emq 47 (127)
..||..|+.-|..||........+. ..--++.+. ..+||+.+.-
T Consensus 36 ~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N-~FaDlt~eEf 82 (331)
T 3qj3_A 36 AKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVN-LFTDMTPEEM 82 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEECCS-TTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeeccc-ccccCCHHHH
Confidence 4688999999999998877653321 111223333 6899998643
No 17
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.19 E-value=89 Score=19.30 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhcccC
Q 033090 52 KCARDQLDSMPGKLDSKRLALALKKEFDSSY 82 (127)
Q Consensus 52 ~~a~~al~~~~~~~~~kdIA~~IK~~lDkky 82 (127)
+.|+.||+..++ +.+.+|..|-.+.|-.-
T Consensus 34 ~qA~kALKat~~--NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 34 ECVLRAMKKKGE--NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHCS--CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHhCCCCCC
Confidence 468889999875 78999999998888643
No 18
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=22.08 E-value=2.1e+02 Score=20.19 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhhhhccccccEEeeCCCCHHHHHHHHHHHHHHH
Q 033090 1 MEAAEELERRSKFLNSLIQKKKAKEQQEQNDQLNVRVRASDMPLPLQNKAFKCARDQL 58 (127)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~sDM~~emq~~ai~~a~~al 58 (127)
|..||=|.+|.++-+.|-+...--.+ .+.|...|-|.+-..+......+.+
T Consensus 4 MKLAEAL~lRadl~kri~qL~~ri~~-------n~~vQEGe~P~edp~~Ll~El~~~~ 54 (154)
T 3kdq_A 4 MYLAEALAQRVEAQRRYSELNQLLLD-------VAKVQEGDQPAENPHEILTELEELT 54 (154)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHHH-------TTEEETTCCCSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh-------cCeecCCCCCCCCHHHHHHHHHHHH
Confidence 67899999999999888776653222 2477778877765555555444443
No 19
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=21.98 E-value=31 Score=25.29 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHhc----ccCCCceEEEEcCCceee
Q 033090 66 DSKRLALALKKEFD----SSYGPAWHCIVGTSFGSY 97 (127)
Q Consensus 66 ~~kdIA~~IK~~lD----kkyG~~WHcIVG~~Fgs~ 97 (127)
+...+|+++-..+| .+|-+.+=+|+|+||||=
T Consensus 31 ~~~~l~~~~f~~~~p~F~~~~~~g~IlVaG~NFG~G 66 (176)
T 3vba_A 31 KPEELAQFVMTGADPDFPKKVKPGDIIVGGKNFGCG 66 (176)
T ss_dssp SHHHHGGGTTTTTCTTHHHHCCTTCEEEECTTBTBS
T ss_pred CHHHHHHhhCcCCCccHHHhcCCCCEEEeCCCccCC
Confidence 34555555444433 345566666678899973
No 20
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=21.78 E-value=72 Score=19.88 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHH
Q 033090 42 MPLPLQNKAFKCARDQLDSM-PGKLDSKRLALA 73 (127)
Q Consensus 42 M~~emq~~ai~~a~~al~~~-~~~~~~kdIA~~ 73 (127)
|++.-++.|++...+.++.. +...+..+||+.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~ 33 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPVKTRDIADA 33 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCEEHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCHHHHHHH
Confidence 78888888888888876662 111356777764
No 21
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=21.75 E-value=1.8e+02 Score=23.46 Aligned_cols=45 Identities=7% Similarity=0.251 Sum_probs=32.5
Q ss_pred HHHHHhcccCCCceEEEEc-CCceeeEEecCCcEEEEEeCCEEEEEeeeCC
Q 033090 73 ALKKEFDSSYGPAWHCIVG-TSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 122 (127)
Q Consensus 73 ~IK~~lDkkyG~~WHcIVG-~~Fgs~vthe~~~fi~F~~~~~~iLlfKt~~ 122 (127)
....++++-|...|++|.- .... ++|.++-+.+++..++|||..+
T Consensus 31 ~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~d 76 (412)
T 3vca_A 31 VYALDLQHIFYKQWLYAVPVCQLA-----KAGSYTTLRVGAYEVVIVRSRD 76 (412)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGGC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHHHhccCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcCC
Confidence 3446667778999999863 2331 2467777889999999999754
No 22
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=21.43 E-value=1.1e+02 Score=22.09 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHhcccCCCceEEEEcCCceee
Q 033090 65 LDSKRLALALKKEFDSSYGPAWHCIVGTSFGSY 97 (127)
Q Consensus 65 ~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~ 97 (127)
.+..++|+.|.+..+.-. +.-.-|||+++|-.
T Consensus 83 ~sS~~fA~~l~~~~~~G~-~~i~FvIGGa~Gl~ 114 (167)
T 1to0_A 83 KTSEELADTIDKLATYGK-SKVTFVIGGSLGLS 114 (167)
T ss_dssp CCHHHHHHHHHHHHTTTC-CEEEEEECCSSCCC
T ss_pred CCHHHHHHHHHHHHhcCC-ceEEEEEECCCCCC
Confidence 456899999999887532 34566789999854
No 23
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=21.40 E-value=2e+02 Score=23.39 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=29.3
Q ss_pred HHHhcccCCCceEEEEc-CCceeeEEecCCcEEEEEeCCEEEEEeeeCC
Q 033090 75 KKEFDSSYGPAWHCIVG-TSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 122 (127)
Q Consensus 75 K~~lDkkyG~~WHcIVG-~~Fgs~vthe~~~fi~F~~~~~~iLlfKt~~ 122 (127)
..+++.-|...|++|.- ..+. +++.++-+.+++..|+|||..+
T Consensus 35 ~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~g~~vvv~R~~~ 78 (470)
T 2b1x_A 35 DVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRDEG 78 (470)
T ss_dssp HHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHhhcCCeEeeeHHHCC-----CCCCeEEEEECCeEEEEEEcCC
Confidence 34455567899999753 2331 2356777788999999999644
No 24
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=20.85 E-value=1e+02 Score=21.92 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHhcccCCCceEEEEcCCceee
Q 033090 64 KLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSY 97 (127)
Q Consensus 64 ~~~~kdIA~~IK~~lDkkyG~~WHcIVG~~Fgs~ 97 (127)
..+..++|+.|.+..+.- +.-.-|||+++|-.
T Consensus 78 ~~sS~~fA~~l~~~~~~g--~~i~FvIGG~~Gl~ 109 (155)
T 1ns5_A 78 PWDTPQLAAELERWKLDG--RDVSLLIGGPEGLS 109 (155)
T ss_dssp CCCHHHHHHHHHHHHHHC--SCEEEEECBTTBCC
T ss_pred cCCHHHHHHHHHHHHhcC--CeEEEEEECCCCCC
Confidence 456789999999988764 56667789999854
No 25
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=20.62 E-value=2e+02 Score=22.09 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=43.8
Q ss_pred cccccEEeeCCCCHHHHHHHHHHHHHH-HhcCCC----------CCCHHHHHHHHHHHhcccCCCceEEEE-cCC
Q 033090 31 DQLNVRVRASDMPLPLQNKAFKCARDQ-LDSMPG----------KLDSKRLALALKKEFDSSYGPAWHCIV-GTS 93 (127)
Q Consensus 31 ~~~~i~V~~sDM~~emq~~ai~~a~~a-l~~~~~----------~~~~kdIA~~IK~~lDkkyG~~WHcIV-G~~ 93 (127)
+-++|.-=..+||.+.+..+++.+.+. +.-.++ ..+..++.+.++..||. +.|.||| ++.
T Consensus 100 ~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~ViiEarE 171 (251)
T 1qwg_A 100 EAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVIIEGRE 171 (251)
T ss_dssp CEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEECCTT
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEEeeec
Confidence 344555557899999999999998877 322110 23568899999999997 7899998 543
No 26
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=20.32 E-value=66 Score=17.36 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhh
Q 033090 8 ERRSKFLNSLIQKK 21 (127)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (127)
..+++|+++|++-.
T Consensus 17 ~aak~fl~wL~~~k 30 (33)
T 2l63_A 17 LAARDFINWLIQTK 30 (33)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCC
Confidence 46789999999744
Done!