BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033093
         (127 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8VCC8|RPGF3_MOUSE Rap guanine nucleotide exchange factor 3 OS=Mus musculus GN=Rapgef3
           PE=2 SV=2
          Length = 918

 Score = 30.8 bits (68), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 2   AKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAE 41
           A+  ATSL  N R F+  P E+  +   PE +GP   ++E
Sbjct: 620 ARGVATSLGLNERLFVVDPQEVHELTPHPEQLGPTLGSSE 659


>sp|Q3ZA07|SYL_DEHE1 Leucine--tRNA ligase OS=Dehalococcoides ethenogenes (strain 195)
           GN=leuS PE=3 SV=1
          Length = 813

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 42  YRVRCPATPEQQAIIPTSNPETVYDIKY 69
           + + CPA PEQ+  + T+ P+T+Y + +
Sbjct: 232 FALDCPAAPEQEIKVFTTRPDTIYGVTF 259


>sp|O95398|RPGF3_HUMAN Rap guanine nucleotide exchange factor 3 OS=Homo sapiens GN=RAPGEF3
           PE=1 SV=6
          Length = 923

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 2   AKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAE 41
           A+  ATSL  N R F+  P E+  +   P+ +GP   +AE
Sbjct: 617 ARGVATSLGLNERLFVVNPQEVHELIPHPDQLGPTVGSAE 656


>sp|Q3TL44|NLRX1_MOUSE NLR family member X1 OS=Mus musculus GN=Nlrx1 PE=2 SV=1
          Length = 975

 Score = 30.4 bits (67), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 24  TGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNPETVYDI--KYYSR 72
           TG+CSDPE  GP        +R    PE  +I+ T+ P T+  I  KY  R
Sbjct: 256 TGLCSDPEEPGPPAAIIVNLLRKYMLPE-ASILVTTRPSTISRIPSKYVGR 305


>sp|Q9Z1C8|RPGF3_RAT Rap guanine nucleotide exchange factor 3 OS=Rattus norvegicus
           GN=Rapgef3 PE=2 SV=2
          Length = 926

 Score = 30.4 bits (67), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 2   AKAAATSLFQNLRRFIKKPWEITGVCSDPEYMGPLRKAAE 41
           A+  ATSL  N R F+  P E+  +   PE +GP   ++E
Sbjct: 620 ARGVATSLGLNERIFVVDPQEVHELTPHPEQLGPTLGSSE 659


>sp|A6LHM7|RS2_PARD8 30S ribosomal protein S2 OS=Parabacteroides distasonis (strain ATCC
           8503 / DSM 20701 / NCTC 11152) GN=rpsB PE=3 SV=1
          Length = 278

 Score = 28.9 bits (63), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 23  ITGVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTSNPETV---YDIKYYSRDQRRNRP 79
           +  V    E M  L K  + +V   AT +Q   +      +V   Y I+ +      N P
Sbjct: 47  VAKVDEAAEVMKNLAKQGK-KVLFVATKKQAKQVVADKAASVGMPYVIERWPGGMLTNFP 105

Query: 80  PIRRTILKKADVEKMMKEKTFD 101
            IR+ I K A ++KM K+ TFD
Sbjct: 106 TIRKAIKKMATIDKMTKDGTFD 127


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.135    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,767,419
Number of Sequences: 539616
Number of extensions: 1860510
Number of successful extensions: 4623
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4618
Number of HSP's gapped (non-prelim): 8
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)