Query 033093
Match_columns 127
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 15:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ssk_A Nucleocapsid protein; s 9.6 1.5E+02 0.005 22.8 2.0 26 54-79 48-74 (158)
2 2k10_A Ranatuerin-2CSA; molecu 8.6 74 0.0025 18.1 -0.0 12 2-13 10-21 (32)
3 1sch_A PNP, peanut peroxidase, 8.6 44 0.0015 27.0 -1.4 44 25-74 186-230 (294)
4 1wub_A Conserved hypothetical 8.1 1.4E+02 0.0048 21.4 1.3 25 92-116 64-89 (178)
5 2wul_A Glutaredoxin related pr 8.0 1.8E+02 0.0063 20.0 1.9 31 82-113 55-85 (118)
6 1y0g_A Protein YCEI; lipid bin 7.6 1.5E+02 0.0051 21.5 1.3 28 89-116 85-114 (191)
7 2fgs_A Putative periplasmic pr 7.4 1.4E+02 0.0049 21.5 1.1 27 89-115 61-89 (179)
8 2ofz_A Nucleocapsid protein; S 7.4 1.7E+02 0.0059 22.0 1.5 25 55-79 36-61 (138)
9 3hd4_A Nucleoprotein; beta pla 7.3 1.7E+02 0.0058 22.0 1.5 24 54-77 29-53 (139)
10 1jfr_A Lipase; serine hydrolas 7.0 5.9E+02 0.02 17.2 4.0 11 39-49 251-261 (262)
No 1
>1ssk_A Nucleocapsid protein; structural protein; NMR {Sars coronavirus} SCOP: b.148.1.1
Probab=9.63 E-value=1.5e+02 Score=22.79 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=20.0
Q ss_pred eecCCCC-CcceeeeeeeecccccCCC
Q 033093 54 AIIPTSN-PETVYDIKYYSRDQRRNRP 79 (127)
Q Consensus 54 ~~VP~s~-pe~VYDIkY~tRD~RRn~~ 79 (127)
--||... -...+.|.|+.|-+||-++
T Consensus 48 ~GVP~~~~v~~~qq~GYW~rq~Rr~~~ 74 (158)
T 1ssk_A 48 QGVPINTNSGPDDQIGYYRRATRRVRG 74 (158)
T ss_dssp CCSCCCSSSCSSCCEEEEEEECCCCCC
T ss_pred CCCccCCCCCHHHhcchhhhhheeccC
Confidence 3478664 4788999999999998644
No 2
>2k10_A Ranatuerin-2CSA; molecular modelling, helix-turn-helix, disulfide bond, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=8.64 E-value=74 Score=18.06 Aligned_cols=12 Identities=42% Similarity=0.409 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHH
Q 033093 2 AKAAATSLFQNL 13 (127)
Q Consensus 2 a~~a~ksl~q~l 13 (127)
+|.++|.+.+++
T Consensus 10 ~K~~aK~~~~~~ 21 (32)
T 2k10_A 10 AKGVAKDLAGKL 21 (32)
T ss_dssp GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 3
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1
Probab=8.59 E-value=44 Score=26.97 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=27.9
Q ss_pred ecCCCCccccccccccccccCCCCCCCceeecCCC-CCcceeeeeeeeccc
Q 033093 25 GVCSDPEYMGPLRKAAEYRVRCPATPEQQAIIPTS-NPETVYDIKYYSRDQ 74 (127)
Q Consensus 25 GP~S~pEy~~~~p~a~EYR~~sPAs~~~~~~VP~s-~pe~VYDIkY~tRD~ 74 (127)
.|.-+|.|... -|..||.+......+|-+ ..-.+||-.||.-=.
T Consensus 186 dp~~~~~~~~~------L~~~Cp~~g~~~~~~~lD~~tp~~FDn~Yy~~l~ 230 (294)
T 1sch_A 186 ESNIDPTYAKS------LQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLR 230 (294)
T ss_dssp CSSSCHHHHHH------HHTTSCSSSCTTCEEESCSSSTBSCSTHHHHHHH
T ss_pred CcccCHHHHHH------HhccCCCCCCCCccccCCccccccccHHHHHHHH
Confidence 45556666544 488999764334556643 245789999997543
No 4
>1wub_A Conserved hypothetical protein TT1927B; beta-barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: OTP; 1.65A {Thermus thermophilus} SCOP: b.61.6.1
Probab=8.06 E-value=1.4e+02 Score=21.35 Aligned_cols=25 Identities=8% Similarity=0.290 Sum_probs=17.9
Q ss_pred HHHhhhhcccCCCCCccccc-cceec
Q 033093 92 EKMMKEKTFDVTDFPPVFLT-GAVEE 116 (127)
Q Consensus 92 e~~~~~k~fd~~~fP~~y~~-~~veE 116 (127)
++|+.+.+||+..||.+-.. +.|+.
T Consensus 64 ~hl~s~dffd~~~~P~~tF~st~v~~ 89 (178)
T 1wub_A 64 GHLRSADFLHAEQYPEIRFVSTQIEP 89 (178)
T ss_dssp HHHHSTTTTCTTTCCEEEEEEEEEEE
T ss_pred HHhCCccccccccCCEEEEEEEEEEE
Confidence 45555589999999987765 44653
No 5
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=8.01 E-value=1.8e+02 Score=20.05 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=22.3
Q ss_pred ceeecccccHHHHhhhhcccCCCCCccccccc
Q 033093 82 RRTILKKADVEKMMKEKTFDVTDFPPVFLTGA 113 (127)
Q Consensus 82 ~rtvlkk~d~e~~~~~k~fd~~~fP~~y~~~~ 113 (127)
-..|+.++++.+.|++.+ +..-+|.+|+++.
T Consensus 55 ~~~v~~~~~~r~~l~~~s-g~~TvPqIFI~g~ 85 (118)
T 2wul_A 55 AYNVLDDPELRQGIKDYS-NWPTIPQVYLNGE 85 (118)
T ss_dssp EEETTSCHHHHHHHHHHH-TCCSSCEEEETTE
T ss_pred eecccCCHHHHHHHHHhc-cCCCCCeEeECCE
Confidence 345567778888887764 4567999999864
No 6
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=7.59 E-value=1.5e+02 Score=21.49 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=18.9
Q ss_pred ccHHHHhh-hhcccCCCCCccccc-cceec
Q 033093 89 ADVEKMMK-EKTFDVTDFPPVFLT-GAVEE 116 (127)
Q Consensus 89 ~d~e~~~~-~k~fd~~~fP~~y~~-~~veE 116 (127)
+..++-++ +.+||+..||.+-.. +.|+.
T Consensus 85 ~~rd~hl~s~dffd~~~~P~atF~st~v~~ 114 (191)
T 1y0g_A 85 AERDKHLRSADFLNTAKYPQATFTSTSVKK 114 (191)
T ss_dssp HHHHHHHHSTTTTCTTTCCEEEEEEEEEEE
T ss_pred HHHHHHhCCccccCccCCCeEEEEEEEEEE
Confidence 34444444 689999999987664 55553
No 7
>2fgs_A Putative periplasmic protein; lipid binding protein, structural genomics, protein structure initiative, PSI, nysgxrc; 2.90A {Campylobacter jejuni}
Probab=7.45 E-value=1.4e+02 Score=21.48 Aligned_cols=27 Identities=15% Similarity=0.376 Sum_probs=18.8
Q ss_pred ccHHHHhh-hhcccCCCCCccccc-ccee
Q 033093 89 ADVEKMMK-EKTFDVTDFPPVFLT-GAVE 115 (127)
Q Consensus 89 ~d~e~~~~-~k~fd~~~fP~~y~~-~~ve 115 (127)
+..++-|+ +.+||+..||.+=.. +.|+
T Consensus 61 ~~rd~hL~s~dfFd~~~~P~atF~st~v~ 89 (179)
T 2fgs_A 61 QTRDNHLQQDDFFKAKKYPDMTFTMKKYE 89 (179)
T ss_dssp HHHHHHHTSTTTTCTTTCCEEEEEEEEEE
T ss_pred HHHHHHhCCccccCcccCCEEEEEEEEEE
Confidence 45554454 479999999987665 5465
No 8
>2ofz_A Nucleocapsid protein; SARS coronavirus nucleocapsid RNA binding N-terminal domain, N protein, SARS-ORF9A, viral protein; 1.17A {Sars coronavirus TOR2} PDB: 2og3_A
Probab=7.36 E-value=1.7e+02 Score=21.98 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=19.8
Q ss_pred ecCCCC-CcceeeeeeeecccccCCC
Q 033093 55 IIPTSN-PETVYDIKYYSRDQRRNRP 79 (127)
Q Consensus 55 ~VP~s~-pe~VYDIkY~tRD~RRn~~ 79 (127)
-||.+. -...+.|.|+.|-+||-++
T Consensus 36 GVP~n~~v~~~qq~GYW~rq~Rr~~~ 61 (138)
T 2ofz_A 36 GVPINTNSGPDDQIGYYRRATRRVRG 61 (138)
T ss_dssp CCCCCTTSCGGGCEEEEEEECCEEEC
T ss_pred CcccCCCCCHHHhcchhhheeeeccC
Confidence 478664 5788999999999998644
No 9
>3hd4_A Nucleoprotein; beta platform beta hairpin, golgi apparatus, nucleus, RNA-binding, transcription, transcriptio regulation, virion; 1.75A {Murine hepatitis virus}
Probab=7.34 E-value=1.7e+02 Score=22.05 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=18.8
Q ss_pred eecCCCC-CcceeeeeeeecccccC
Q 033093 54 AIIPTSN-PETVYDIKYYSRDQRRN 77 (127)
Q Consensus 54 ~~VP~s~-pe~VYDIkY~tRD~RRn 77 (127)
--||.+. -...+.|.|+.|-+||+
T Consensus 29 ~GVP~n~g~~~~~q~GYW~rq~Rr~ 53 (139)
T 3hd4_A 29 QGVPIANGIPASEQKGYWYRHNRRS 53 (139)
T ss_dssp CCCCCCTTCCGGGCEEEEEEECSCE
T ss_pred CccccCCCCChHHhcchheeeeccc
Confidence 3577555 55889999999999975
No 10
>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16
Probab=6.96 E-value=5.9e+02 Score=17.20 Aligned_cols=11 Identities=64% Similarity=1.060 Sum_probs=7.6
Q ss_pred ccccccCCCCC
Q 033093 39 AAEYRVRCPAT 49 (127)
Q Consensus 39 a~EYR~~sPAs 49 (127)
-.+||..||.+
T Consensus 251 ~~~~~~~~p~~ 261 (262)
T 1jfr_A 251 IAEYRGTCPHT 261 (262)
T ss_dssp EEEEEECCSCC
T ss_pred HHHhcCCCCCC
Confidence 45777777765
Done!