Query 033093
Match_columns 127
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 15:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033093.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033093hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r7ha_ c.47.1.1 (A:) Glutared 12.7 61 0.0044 18.0 2.2 36 77-114 25-60 (74)
2 d1xr4a2 c.124.1.2 (A:237-505) 9.9 73 0.0053 23.3 2.3 33 6-46 227-260 (269)
3 d1y0ga_ b.61.6.1 (A:) Lipid bi 9.3 51 0.0037 21.7 1.1 25 92-116 67-92 (169)
4 d1wuba_ b.61.6.1 (A:) Polyisop 8.8 59 0.0043 21.5 1.3 24 92-115 64-88 (176)
5 d1xuba1 d.21.1.2 (A:1-128) Phe 7.3 1.2E+02 0.0085 19.7 2.3 23 50-73 43-66 (128)
6 d2gc6a1 c.59.1.2 (A:297-425) F 6.9 2.4E+02 0.018 16.3 3.5 33 4-36 23-56 (129)
7 d2a21a1 c.1.10.4 (A:1002-1264) 6.7 62 0.0045 23.0 0.6 15 23-37 6-20 (263)
8 d1n8fa_ c.1.10.4 (A:) 3-deoxy- 6.0 76 0.0055 24.8 0.8 10 22-31 49-58 (343)
9 d1jvra_ a.61.1.2 (A:) HTLV-II 5.8 94 0.0069 21.6 1.2 16 10-25 44-68 (137)
10 d1of8a_ c.1.10.4 (A:) 3-deoxy- 5.5 87 0.0064 24.5 0.9 10 22-31 49-58 (346)
No 1
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=12.68 E-value=61 Score=18.04 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=23.8
Q ss_pred CCCccceeecccccHHHHhhhhcccCCCCCccccccce
Q 033093 77 NRPPIRRTILKKADVEKMMKEKTFDVTDFPPVFLTGAV 114 (127)
Q Consensus 77 n~~pi~rtvlkk~d~e~~~~~k~fd~~~fP~~y~~~~v 114 (127)
+-+..-..|..+++...+++. +...-+|.+++++.+
T Consensus 25 ~i~~~~~~i~~~~~~~~~~~~--~g~~tvP~i~i~g~~ 60 (74)
T d1r7ha_ 25 GLAYNTVDISLDDEARDYVMA--LGYVQAPVVEVDGEH 60 (74)
T ss_dssp TCCCEEEETTTCHHHHHHHHH--TTCBCCCEEEETTEE
T ss_pred CCceEEEEccCCHHHHHHHHH--hCCCCcCEEEECCEE
Confidence 344555666777777776654 366789999886543
No 2
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}
Probab=9.85 E-value=73 Score=23.26 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhcCCceeeecCCCC-ccccccccccccccCC
Q 033093 6 ATSLFQNLRRFIKKPWEITGVCSDP-EYMGPLRKAAEYRVRC 46 (127)
Q Consensus 6 ~ksl~q~l~r~ik~PW~iTGP~S~p-Ey~~~~p~a~EYR~~s 46 (127)
+++|.|.-+..|. .++| ||++-+...-|||--+
T Consensus 227 ~~~l~era~~li~--------ia~P~~f~d~l~a~~e~Rdgt 260 (269)
T d1xr4a2 227 IEQLQQRAEQLTG--------KPQPIEFTDRVVAVVRYRDGS 260 (269)
T ss_dssp HHHHHHHHHHHHC--------CCCCCCEEEEEEEEEECTTSC
T ss_pred cccHHHHHHHHhc--------CCCCCCcchhHHHhhhhcCCC
Confidence 5677777777662 4688 9999999999999644
No 3
>d1y0ga_ b.61.6.1 (A:) Lipid binding protein YceI {Escherichia coli [TaxId: 562]}
Probab=9.32 E-value=51 Score=21.69 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=18.3
Q ss_pred HHHhhhhcccCCCCCccccc-cceec
Q 033093 92 EKMMKEKTFDVTDFPPVFLT-GAVEE 116 (127)
Q Consensus 92 e~~~~~k~fd~~~fP~~y~~-~~veE 116 (127)
++|+.+.+||+..||.+-.. +.|+.
T Consensus 67 ~~l~~~dffd~~~~P~i~F~s~~v~~ 92 (169)
T d1y0ga_ 67 KHLRSADFLNTAKYPQATFTSTSVKK 92 (169)
T ss_dssp HHHHSTTTTCTTTCCEEEEEEEEEEE
T ss_pred hhhcccceeEcccCceEEEEEEEEEe
Confidence 46666789999999988664 44543
No 4
>d1wuba_ b.61.6.1 (A:) Polyisoprenoid-binding protein TTHA0802 (TT1927B) {Thermus thermophilus [TaxId: 274]}
Probab=8.81 E-value=59 Score=21.46 Aligned_cols=24 Identities=8% Similarity=0.326 Sum_probs=16.8
Q ss_pred HHHhhhhcccCCCCCccc-ccccee
Q 033093 92 EKMMKEKTFDVTDFPPVF-LTGAVE 115 (127)
Q Consensus 92 e~~~~~k~fd~~~fP~~y-~~~~ve 115 (127)
++|+.+.+||+..||.+- ..+.|+
T Consensus 64 ~~l~s~dffd~~~~P~~~F~st~i~ 88 (176)
T d1wuba_ 64 GHLRSADFLHAEQYPEIRFVSTQIE 88 (176)
T ss_dssp HHHHSTTTTCTTTCCEEEEEEEEEE
T ss_pred hhhcccceeecccCCceEEEEEEEE
Confidence 345556799999999884 445554
No 5
>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]}
Probab=7.28 E-value=1.2e+02 Score=19.75 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=14.8
Q ss_pred CCceeec-CCCCCcceeeeeeeecc
Q 033093 50 PEQQAII-PTSNPETVYDIKYYSRD 73 (127)
Q Consensus 50 ~~~~~~V-P~s~pe~VYDIkY~tRD 73 (127)
+++++.| |.+++ ..|.|||||=.
T Consensus 43 ~sETaFv~~~~~~-~~~~vR~FtP~ 66 (128)
T d1xuba1 43 LSESTFVLKPRNG-GDALIRIFTPV 66 (128)
T ss_dssp SSCEEEEECCSSS-SSEEEEEECSS
T ss_pred CCcEEEEecCCCC-CceEEEEEecc
Confidence 3555665 65554 45899999843
No 6
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=6.86 E-value=2.4e+02 Score=16.34 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhcCCc-eeeecCCCCcccccc
Q 033093 4 AAATSLFQNLRRFIKKPW-EITGVCSDPEYMGPL 36 (127)
Q Consensus 4 ~a~ksl~q~l~r~ik~PW-~iTGP~S~pEy~~~~ 36 (127)
+|++.|.+.|+++.++++ -|-|..+|-+..+.+
T Consensus 23 ~~~~~l~~~l~~~~~~~~~~v~g~~~dKd~~~~l 56 (129)
T d2gc6a1 23 DGINGLITALKQLFSQPITVIAGILADKDYAAMA 56 (129)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEECCC----CCSSS
T ss_pred HHHHHHhhccccccchhhhhhccccCCccHHHHH
Confidence 478899999998776664 577888887765543
No 7
>d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}
Probab=6.69 E-value=62 Score=23.04 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=9.1
Q ss_pred eeecCCCCccccccc
Q 033093 23 ITGVCSDPEYMGPLR 37 (127)
Q Consensus 23 iTGP~S~pEy~~~~p 37 (127)
|.||||-=....++-
T Consensus 6 IaGPCsies~e~~~~ 20 (263)
T d2a21a1 6 IAGPCAIESEELLLK 20 (263)
T ss_dssp EEECSBCCCHHHHHH
T ss_pred EecCCcCCCHHHHHH
Confidence 678887655554443
No 8
>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]}
Probab=6.01 E-value=76 Score=24.80 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=7.5
Q ss_pred eeeecCCCCc
Q 033093 22 EITGVCSDPE 31 (127)
Q Consensus 22 ~iTGP~S~pE 31 (127)
-|+||||-=+
T Consensus 49 VVvGPCSIHD 58 (343)
T d1n8fa_ 49 VVIGPCSIHD 58 (343)
T ss_dssp EEEECSSCCC
T ss_pred EEEcCCcCCC
Confidence 4899999743
No 9
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=5.83 E-value=94 Score=21.64 Aligned_cols=16 Identities=50% Similarity=0.885 Sum_probs=11.0
Q ss_pred HHHHHHhhc---------CCceeee
Q 033093 10 FQNLRRFIK---------KPWEITG 25 (127)
Q Consensus 10 ~q~l~r~ik---------~PW~iTG 25 (127)
|++||||+| +||.+.+
T Consensus 44 F~qLr~flklalkTpvwl~Pi~ySl 68 (137)
T d1jvra_ 44 FQQLRRFLKLALKTPIWLNPIDYSL 68 (137)
T ss_dssp HHHHHHHHHHHHTCTTSTTTTCTTT
T ss_pred HHHHHHHHHHHHhCcccccccccch
Confidence 678888874 5676654
No 10
>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]}
Probab=5.46 E-value=87 Score=24.49 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=7.4
Q ss_pred eeeecCCCCc
Q 033093 22 EITGVCSDPE 31 (127)
Q Consensus 22 ~iTGP~S~pE 31 (127)
-|.||||-=+
T Consensus 49 VIvGPCSIHD 58 (346)
T d1of8a_ 49 VIVGPCSIHD 58 (346)
T ss_dssp EEEECSCCCC
T ss_pred EEEcCCcCCC
Confidence 4899999643
Done!