Query 033095
Match_columns 127
No_of_seqs 198 out of 1138
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02216 protein SRG1 100.0 8.5E-33 1.8E-37 205.1 11.9 126 1-126 58-183 (357)
2 PLN02758 oxidoreductase, 2OG-F 100.0 3.7E-32 8E-37 201.9 11.5 125 2-126 59-185 (361)
3 PLN02515 naringenin,2-oxogluta 100.0 2.3E-31 4.9E-36 197.4 11.8 125 2-126 44-169 (358)
4 COG3491 PcbC Isopenicillin N s 100.0 8.6E-31 1.9E-35 187.0 11.0 125 2-127 12-149 (322)
5 PLN02393 leucoanthocyanidin di 100.0 9E-31 2E-35 194.7 11.6 126 1-126 57-184 (362)
6 PLN00417 oxidoreductase, 2OG-F 100.0 1.2E-30 2.5E-35 193.2 12.0 126 1-126 50-176 (348)
7 KOG0143 Iron/ascorbate family 100.0 1.5E-30 3.3E-35 190.5 12.3 117 10-126 33-149 (322)
8 PLN02276 gibberellin 20-oxidas 100.0 1.4E-30 2.9E-35 193.7 11.7 126 1-126 46-180 (361)
9 PLN03178 leucoanthocyanidin di 100.0 1.5E-30 3.2E-35 193.4 11.6 126 1-126 53-182 (360)
10 PLN02254 gibberellin 3-beta-di 100.0 2.1E-30 4.5E-35 192.3 11.2 115 11-126 65-179 (358)
11 PTZ00273 oxidase reductase; Pr 100.0 5.8E-30 1.2E-34 187.8 11.8 125 2-126 12-151 (320)
12 PLN02750 oxidoreductase, 2OG-F 100.0 1.8E-29 4E-34 186.7 12.4 115 10-126 40-167 (345)
13 PLN02485 oxidoreductase 100.0 2.6E-29 5.6E-34 184.9 12.2 117 10-126 31-157 (329)
14 PLN02947 oxidoreductase 100.0 4.3E-29 9.4E-34 186.1 11.9 123 2-126 73-196 (374)
15 PF14226 DIOX_N: non-haem diox 100.0 2.4E-29 5.2E-34 159.9 8.5 97 9-106 12-116 (116)
16 PLN02912 oxidoreductase, 2OG-F 100.0 6.7E-29 1.5E-33 183.8 11.5 122 2-126 48-171 (348)
17 PLN03002 oxidoreductase, 2OG-F 100.0 1.2E-28 2.6E-33 181.6 12.2 116 10-126 25-154 (332)
18 PLN02904 oxidoreductase 100.0 1E-28 2.2E-33 183.3 11.7 124 2-126 58-182 (357)
19 PLN02997 flavonol synthase 100.0 1.6E-28 3.6E-33 180.2 11.6 113 10-126 43-155 (325)
20 PLN02299 1-aminocyclopropane-1 100.0 2.6E-28 5.7E-33 179.0 11.6 111 9-126 19-129 (321)
21 PLN02704 flavonol synthase 100.0 4.7E-28 1E-32 178.6 11.6 117 10-126 53-171 (335)
22 PLN02639 oxidoreductase, 2OG-F 99.9 2.1E-27 4.6E-32 175.3 11.1 115 10-126 48-164 (337)
23 PLN02403 aminocyclopropanecarb 99.9 5.7E-27 1.2E-31 170.6 10.9 109 10-126 16-124 (303)
24 PLN02156 gibberellin 2-beta-di 99.9 6.4E-27 1.4E-31 172.3 11.0 111 13-126 37-149 (335)
25 PLN02365 2-oxoglutarate-depend 99.9 1.8E-24 4E-29 157.5 10.8 107 13-126 17-126 (300)
26 PLN02984 oxidoreductase, 2OG-F 99.9 2.1E-24 4.5E-29 159.4 10.6 112 13-126 48-172 (341)
27 PLN03176 flavanone-3-hydroxyla 99.9 8.5E-23 1.9E-27 130.5 8.6 72 2-73 44-116 (120)
28 PLN03001 oxidoreductase, 2OG-F 99.6 3.4E-15 7.3E-20 107.0 6.0 85 42-126 1-90 (262)
29 PF03668 ATP_bind_2: P-loop AT 66.3 11 0.00024 27.7 3.9 29 17-47 17-45 (284)
30 COG1402 Uncharacterized protei 66.0 22 0.00047 25.7 5.3 40 12-51 90-132 (250)
31 PF12368 DUF3650: Protein of u 64.8 3.9 8.5E-05 19.2 0.9 16 27-42 9-24 (28)
32 PF11243 DUF3045: Protein of u 63.2 6.7 0.00015 23.1 1.9 21 15-35 36-56 (89)
33 PF03460 NIR_SIR_ferr: Nitrite 63.2 12 0.00026 20.8 3.0 38 11-48 23-68 (69)
34 PF01471 PG_binding_1: Putativ 62.0 21 0.00046 18.8 3.8 42 12-53 3-44 (57)
35 cd00379 Ribosomal_L10_P0 Ribos 58.5 47 0.001 21.5 5.6 38 11-48 4-42 (155)
36 PRK15331 chaperone protein Sic 57.7 12 0.00026 25.3 2.6 41 11-52 10-50 (165)
37 PF07071 DUF1341: Protein of u 57.1 31 0.00067 24.3 4.5 41 7-47 159-199 (218)
38 COG4185 Uncharacterized protei 56.1 46 0.00099 22.8 5.1 33 13-45 82-136 (187)
39 PRK05874 L-fuculose-phosphate 55.7 14 0.0003 25.9 2.8 24 11-34 139-162 (217)
40 TIGR03581 EF_0839 conserved hy 54.1 39 0.00085 24.0 4.7 38 9-47 161-199 (236)
41 PF11043 DUF2856: Protein of u 52.2 25 0.00055 20.8 3.0 24 36-59 20-43 (97)
42 PRK08660 L-fuculose phosphate 50.5 23 0.0005 23.9 3.2 23 12-34 127-149 (181)
43 PRK08130 putative aldolase; Va 49.4 21 0.00046 24.8 2.9 23 12-34 140-162 (213)
44 PRK08333 L-fuculose phosphate 49.4 22 0.00047 24.1 2.9 23 12-34 133-155 (184)
45 KOG4513 Phosphoglycerate mutas 49.0 19 0.00041 27.9 2.7 26 11-36 435-462 (531)
46 cd05795 Ribosomal_P0_L10e Ribo 48.7 65 0.0014 21.7 5.1 38 11-48 4-42 (175)
47 cd05796 Ribosomal_P0_like Ribo 48.7 57 0.0012 21.7 4.8 38 11-48 4-42 (163)
48 COG0244 RplJ Ribosomal protein 48.1 80 0.0017 21.4 5.5 40 10-49 8-48 (175)
49 PRK06661 hypothetical protein; 47.9 20 0.00044 25.3 2.7 24 12-35 138-161 (231)
50 KOG1602 Cis-prenyltransferase 47.1 63 0.0014 23.6 5.0 46 12-57 67-119 (271)
51 PRK04019 rplP0 acidic ribosoma 45.7 70 0.0015 24.0 5.3 39 10-48 8-47 (330)
52 PF02668 TauD: Taurine catabol 44.3 58 0.0013 22.6 4.6 35 12-49 24-58 (258)
53 PRK06833 L-fuculose phosphate 43.8 29 0.00062 24.2 2.9 23 12-34 137-159 (214)
54 PF08823 PG_binding_2: Putativ 42.4 61 0.0013 18.7 3.7 35 11-45 15-49 (74)
55 COG0159 TrpA Tryptophan syntha 42.3 61 0.0013 23.7 4.4 39 12-52 161-206 (265)
56 PF13376 OmdA: Bacteriocin-pro 42.0 45 0.00098 18.3 3.0 31 31-61 3-36 (63)
57 PRK09220 methylthioribulose-1- 42.0 35 0.00075 23.6 3.1 24 11-34 145-171 (204)
58 PRK06754 mtnB methylthioribulo 40.6 31 0.00068 23.9 2.7 23 12-34 149-172 (208)
59 TIGR02408 ectoine_ThpD ectoine 40.2 77 0.0017 22.9 4.8 38 14-52 18-55 (277)
60 PRK00115 hemE uroporphyrinogen 39.3 82 0.0018 23.5 4.9 38 12-49 303-344 (346)
61 PRK06208 hypothetical protein; 39.0 35 0.00076 24.9 2.8 24 12-35 178-201 (274)
62 PRK03634 rhamnulose-1-phosphat 38.8 36 0.00079 24.8 2.8 24 12-35 192-215 (274)
63 TIGR02410 carnitine_TMLD trime 38.7 90 0.0019 23.6 5.0 36 12-50 115-150 (362)
64 PF11848 DUF3368: Domain of un 38.7 60 0.0013 16.8 3.4 28 13-46 20-47 (48)
65 PRK06486 hypothetical protein; 38.5 35 0.00076 24.7 2.7 24 12-35 163-186 (262)
66 PRK11460 putative hydrolase; P 38.5 1.2E+02 0.0026 21.1 5.4 40 12-51 165-210 (232)
67 PRK00099 rplJ 50S ribosomal pr 38.3 1.2E+02 0.0026 20.2 5.6 38 11-48 7-45 (172)
68 PF09440 eIF3_N: eIF3 subunit 38.2 26 0.00056 22.7 1.8 18 30-47 114-131 (133)
69 TIGR03328 salvage_mtnB methylt 37.6 45 0.00097 22.8 3.0 23 12-34 138-163 (193)
70 COG1660 Predicted P-loop-conta 36.9 63 0.0014 23.8 3.7 25 18-44 18-42 (286)
71 PLN02433 uroporphyrinogen deca 36.9 95 0.002 23.2 4.9 40 11-50 295-338 (345)
72 PF10044 Ret_tiss: Retinal tis 36.6 29 0.00062 21.3 1.7 14 100-113 12-25 (95)
73 TIGR01086 fucA L-fuculose phos 36.4 39 0.00085 23.5 2.6 23 12-34 134-156 (214)
74 PF00596 Aldolase_II: Class II 36.4 30 0.00064 23.2 2.0 23 12-34 136-159 (184)
75 PRK07490 hypothetical protein; 35.7 42 0.0009 24.0 2.7 23 12-34 147-169 (245)
76 PF05721 PhyH: Phytanoyl-CoA d 35.7 68 0.0015 21.1 3.7 28 21-49 1-28 (211)
77 PRK09553 tauD taurine dioxygen 35.5 1.2E+02 0.0026 21.9 5.1 39 11-52 27-65 (277)
78 PF11074 DUF2779: Domain of un 35.2 98 0.0021 19.9 4.1 32 8-39 55-87 (130)
79 TIGR02624 rhamnu_1P_ald rhamnu 35.0 46 0.001 24.2 2.9 24 11-34 189-212 (270)
80 PLN02452 phosphoserine transam 34.6 76 0.0017 24.1 4.1 37 13-49 312-360 (365)
81 cd05797 Ribosomal_L10 Ribosoma 34.5 1.3E+02 0.0029 19.6 5.6 38 11-48 6-44 (157)
82 PRK12462 phosphoserine aminotr 33.8 1E+02 0.0023 23.5 4.7 38 12-49 310-359 (364)
83 PF00586 AIRS: AIR synthase re 33.2 53 0.0012 19.4 2.6 22 11-32 74-95 (96)
84 PRK08087 L-fuculose phosphate 33.1 52 0.0011 22.9 2.8 23 12-34 135-157 (215)
85 PRK06357 hypothetical protein; 32.4 67 0.0014 22.5 3.3 23 12-34 143-171 (216)
86 TIGR02409 carnitine_bodg gamma 32.0 1.4E+02 0.003 22.6 5.1 37 12-51 123-159 (366)
87 TIGR02763 chlamy_scaf chlamydi 31.6 1.3E+02 0.0027 18.8 3.9 47 17-64 14-62 (114)
88 PRK06770 hypothetical protein; 29.4 1.4E+02 0.0031 20.5 4.3 38 16-61 82-119 (180)
89 PRK06557 L-ribulose-5-phosphat 29.0 63 0.0014 22.5 2.7 24 12-35 143-168 (221)
90 PF13309 HTH_22: HTH domain 28.8 62 0.0013 18.0 2.1 20 12-31 24-43 (64)
91 smart00759 Flu_M1_C Influenza 28.6 1.2E+02 0.0026 18.1 3.4 35 14-48 52-86 (95)
92 smart00671 SEL1 Sel1-like repe 28.4 18 0.00039 16.7 -0.1 20 19-38 2-21 (36)
93 PHA00099 minor capsid protein 28.2 1.1E+02 0.0023 20.0 3.3 48 17-64 44-92 (147)
94 cd04367 IlGF_insulin_like IlGF 28.2 45 0.00098 19.6 1.6 24 11-34 8-31 (79)
95 TIGR03849 arch_ComA phosphosul 27.9 17 0.00037 26.1 -0.3 16 14-29 73-88 (237)
96 PRK05834 hypothetical protein; 27.8 83 0.0018 21.6 3.1 21 14-34 138-160 (194)
97 PF14747 DUF4473: Domain of un 27.7 82 0.0018 18.4 2.6 21 32-52 18-38 (82)
98 PTZ00135 60S acidic ribosomal 27.5 1.9E+02 0.0042 21.5 5.1 39 10-48 10-49 (310)
99 TIGR03677 rpl7ae 50S ribosomal 26.5 1.4E+02 0.003 18.7 3.7 34 16-49 80-116 (117)
100 PF05687 DUF822: Plant protein 26.3 1.1E+02 0.0023 20.4 3.1 33 11-43 23-55 (150)
101 PRK07044 aldolase II superfami 26.3 75 0.0016 22.7 2.7 23 12-34 152-174 (252)
102 PF04914 DltD_C: DltD C-termin 25.8 74 0.0016 20.5 2.4 22 9-31 73-94 (130)
103 TIGR00036 dapB dihydrodipicoli 24.9 1.5E+02 0.0033 21.3 4.1 40 11-50 104-145 (266)
104 PF07283 TrbH: Conjugal transf 24.9 91 0.002 19.9 2.6 25 11-35 35-59 (121)
105 COG0407 HemE Uroporphyrinogen- 24.0 1.9E+02 0.0041 22.1 4.6 39 12-50 306-349 (352)
106 PF04095 NAPRTase: Nicotinate 23.7 1.7E+02 0.0038 20.8 4.2 45 3-48 117-171 (245)
107 KOG1123 RNA polymerase II tran 23.6 1.9E+02 0.0041 23.8 4.6 43 10-52 407-452 (776)
108 PF05338 DUF717: Protein of un 23.5 80 0.0017 17.3 1.8 17 41-57 5-21 (55)
109 PRK08193 araD L-ribulose-5-pho 23.2 1.1E+02 0.0025 21.5 3.2 24 12-35 143-173 (231)
110 TIGR00055 uppS undecaprenyl di 22.9 2.8E+02 0.0061 19.7 5.0 40 12-51 30-76 (226)
111 PRK07090 class II aldolase/add 22.9 99 0.0021 22.3 2.8 24 12-35 164-187 (260)
112 PF13992 YecR: YecR-like lipop 22.9 1E+02 0.0022 17.9 2.4 19 17-35 33-51 (74)
113 PRK00048 dihydrodipicolinate r 22.8 1.6E+02 0.0034 21.1 3.8 41 11-51 96-136 (257)
114 PRK10425 DNase TatD; Provision 22.7 1.9E+02 0.0041 20.8 4.2 37 13-49 16-52 (258)
115 cd03308 CmuA_CmuC_like CmuA_Cm 22.1 1.7E+02 0.0037 22.3 4.1 36 12-47 335-377 (378)
116 PF03278 IpaB_EvcA: IpaB/EvcA 21.8 2E+02 0.0043 19.2 3.8 42 12-59 45-87 (152)
117 cd00465 URO-D_CIMS_like The UR 21.7 2.3E+02 0.0051 20.4 4.6 32 16-47 266-305 (306)
118 COG0289 DapB Dihydrodipicolina 21.6 2.6E+02 0.0056 20.5 4.7 40 12-51 106-145 (266)
119 TIGR00760 araD L-ribulose-5-ph 21.6 1.2E+02 0.0026 21.4 3.0 22 13-34 145-173 (231)
120 COG1224 TIP49 DNA helicase TIP 21.5 43 0.00092 26.0 0.7 28 23-50 328-361 (450)
121 COG1724 Predicted RNA binding 21.4 1.2E+02 0.0026 17.2 2.4 18 14-31 9-26 (66)
122 COG2861 Uncharacterized protei 21.2 3.3E+02 0.0072 19.8 5.3 37 9-46 188-227 (250)
123 COG2245 Predicted membrane pro 21.1 42 0.0009 22.9 0.5 14 46-59 167-180 (182)
124 PF00466 Ribosomal_L10: Riboso 21.1 1.9E+02 0.0042 17.0 5.6 39 11-49 7-46 (100)
125 PF07350 DUF1479: Protein of u 21.0 2.7E+02 0.0059 21.8 4.9 40 13-53 63-102 (416)
126 COG0084 TatD Mg-dependent DNas 20.9 2E+02 0.0044 20.8 4.0 37 14-50 19-55 (256)
127 PF01208 URO-D: Uroporphyrinog 20.8 1.9E+02 0.0042 21.3 4.1 38 12-49 300-343 (343)
128 PRK00766 hypothetical protein; 20.8 1.1E+02 0.0023 21.3 2.5 38 25-62 145-182 (194)
129 cd04368 IlGF IlGF, insulin_lik 20.7 80 0.0017 18.0 1.6 21 11-31 8-28 (67)
130 PF11304 DUF3106: Protein of u 20.3 2.2E+02 0.0047 17.6 3.6 26 34-59 59-84 (107)
131 cd01612 APG12_C Ubiquitin-like 20.2 1.1E+02 0.0023 18.3 2.1 22 11-32 60-81 (87)
132 KOG4402 Uncharacterized conser 20.2 68 0.0015 20.8 1.3 17 100-116 52-68 (144)
133 PF10550 Toxin_36: Conantokin- 20.1 80 0.0017 12.2 1.6 12 115-126 3-14 (15)
134 COG2388 Predicted acetyltransf 20.1 74 0.0016 19.5 1.5 17 31-47 53-69 (99)
135 PF01255 Prenyltransf: Putativ 20.0 2.7E+02 0.0058 19.5 4.5 40 12-51 25-71 (223)
No 1
>PLN02216 protein SRG1
Probab=100.00 E-value=8.5e-33 Score=205.12 Aligned_cols=126 Identities=60% Similarity=1.059 Sum_probs=105.4
Q ss_pred CCCccCccchHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCccc
Q 033095 1 MQSLLYEESMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQ 80 (127)
Q Consensus 1 ~~~l~~~~~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~ 80 (127)
|+.|.+++.+.+++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++...+...+||+........+
T Consensus 58 ls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~ 137 (357)
T PLN02216 58 MKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQ 137 (357)
T ss_pred ChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccc
Confidence 34455555445678889999999999999999999999999999999999999999999976555678997655434456
Q ss_pred cccccccccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 81 KLDWAGIFSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 81 ~~d~~E~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
..||+|.|.+...|.....+|.||+.+++||+++++|+.+|.+|+.
T Consensus 138 ~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~ 183 (357)
T PLN02216 138 KLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAK 183 (357)
T ss_pred cCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHH
Confidence 6799999987765654556899999899999999999999999985
No 2
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.98 E-value=3.7e-32 Score=201.95 Aligned_cols=125 Identities=42% Similarity=0.784 Sum_probs=103.8
Q ss_pred CCccCcc--chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCcc
Q 033095 2 QSLLYEE--SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEE 79 (127)
Q Consensus 2 ~~l~~~~--~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~ 79 (127)
++|.+++ ++++++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++...+...+||+........
T Consensus 59 ~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~ 138 (361)
T PLN02758 59 SRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIELELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSED 138 (361)
T ss_pred hhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCccccCcccccccc
Confidence 4455444 24566788999999999999999999999999999999999999999999987655567899765443345
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 80 QKLDWAGIFSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 80 ~~~d~~E~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
...||+|.|.++..|.....+|.||+.+++||+++++|+.+|.+|++
T Consensus 139 ~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr~~~~~y~~~~~~l~~ 185 (361)
T PLN02758 139 QKLDWCNMFALGVEPHFIRNPKLWPTKPARFSETLEVYSREIRELCQ 185 (361)
T ss_pred cccCeeEEEEeeccCccccccccCccccHHHHHHHHHHHHHHHHHHH
Confidence 56799999988766643446899999889999999999999999986
No 3
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=99.97 E-value=2.3e-31 Score=197.44 Aligned_cols=125 Identities=25% Similarity=0.393 Sum_probs=100.2
Q ss_pred CCccCcc-chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCccc
Q 033095 2 QSLLYEE-SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQ 80 (127)
Q Consensus 2 ~~l~~~~-~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~ 80 (127)
+.+.+++ .|.+.+++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.......+||.........+
T Consensus 44 s~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~ 123 (358)
T PLN02515 44 AGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLARDFFALPAEEKLRFDMSGGKKGGFIVSSHLQGEA 123 (358)
T ss_pred hhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhCcCCCCccCccccccccccc
Confidence 4444333 356778889999999999999999999999999999999999999999999866544457996433223345
Q ss_pred cccccccccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 81 KLDWAGIFSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 81 ~~d~~E~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
..||+|.|.+...|......|.||+.+++||+++++|+++|.+|++
T Consensus 124 ~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L~~ 169 (358)
T PLN02515 124 VQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGLAC 169 (358)
T ss_pred ccCceeeeccccCcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 6799999976544433334689999899999999999999999986
No 4
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=99.97 E-value=8.6e-31 Score=186.99 Aligned_cols=125 Identities=26% Similarity=0.346 Sum_probs=107.3
Q ss_pred CCccCcc--chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCC-CccccccccccCc
Q 033095 2 QSLLYEE--SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPG-DVEGFGQAFVVSE 78 (127)
Q Consensus 2 ~~l~~~~--~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~-~~~GY~~~~~~~~ 78 (127)
+.+..+| +|..++.+|++||++||||||+||||+.++++++++++++||+||.|+|+++.+..+ ..+||...+.+..
T Consensus 12 s~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rGY~~~~~E~t 91 (322)
T COG3491 12 SELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRGYTPHGGELT 91 (322)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccccccccCccccc
Confidence 4455554 477888889999999999999999999999999999999999999999999987543 5899999887777
Q ss_pred ccccccccccccccc-C-------C--CCCCCCCCCCCCcchHHHHHHHHHHHHhhhhC
Q 033095 79 EQKLDWAGIFSMITL-P-------V--HQRKPHLFPKLPPSLRFSLFVLDMDLQAKSEN 127 (127)
Q Consensus 79 ~~~~d~~E~~~~~~~-p-------~--~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~~ 127 (127)
.+..||+|.++++.+ + . ...+||+|| ..|+||+++..|+++|..++.+
T Consensus 92 ~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP-~ip~~r~~ll~~~~~~~~~~~r 149 (322)
T COG3491 92 DGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP-AIPGLRDALLQYYRAMTAVGLR 149 (322)
T ss_pred CCccchhhhcccccccccccCCCccCCCcCCCCCCc-cchhHHHHHHHHHHHHHHHHHH
Confidence 777899999999753 1 1 245899999 8899999999999999999864
No 5
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=99.97 E-value=9e-31 Score=194.66 Aligned_cols=126 Identities=32% Similarity=0.651 Sum_probs=102.7
Q ss_pred CCCccCcc--chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCc
Q 033095 1 MQSLLYEE--SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSE 78 (127)
Q Consensus 1 ~~~l~~~~--~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~ 78 (127)
|+.|.+++ .|.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++...+..++||+.......
T Consensus 57 ls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~Gy~~~~~~~~ 136 (362)
T PLN02393 57 LSSLFSDDARLRDATLRAISEACREWGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANSPATYEGYGSRLGVEK 136 (362)
T ss_pred CccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcccCccccccccccccc
Confidence 35565555 3677888999999999999999999999999999999999999999999998765555789953222222
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 79 EQKLDWAGIFSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 79 ~~~~d~~E~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
....||+|.|++...|.....+|.||+.+++||+++++|+.+|.+|+.
T Consensus 137 ~~~~d~~e~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~la~ 184 (362)
T PLN02393 137 GAILDWSDYYFLHYLPSSLKDPNKWPSLPPSCRELIEEYGEEVVKLCG 184 (362)
T ss_pred ccccCchhheeeeecCccccchhhCcccchHHHHHHHHHHHHHHHHHH
Confidence 346799999887654443445789999889999999999999999985
No 6
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.97 E-value=1.2e-30 Score=193.17 Aligned_cols=126 Identities=35% Similarity=0.616 Sum_probs=101.5
Q ss_pred CCCccCcc-chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCcc
Q 033095 1 MQSLLYEE-SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEE 79 (127)
Q Consensus 1 ~~~l~~~~-~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~ 79 (127)
|+.+.+++ .+++++++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++......++||+........
T Consensus 50 ls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~ 129 (348)
T PLN00417 50 LSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQGYGNDMILSDD 129 (348)
T ss_pred ChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCccccccccccccC
Confidence 34555544 34456788999999999999999999999999999999999999999999997654457899764322234
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 80 QKLDWAGIFSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 80 ~~~d~~E~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
...||+|.+++...|.....+|.||+.+++||+++++|+.+|.+|+.
T Consensus 130 ~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~ 176 (348)
T PLN00417 130 QVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIE 176 (348)
T ss_pred CCcCccceeecccCCcccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 56799998877654533335689999889999999999999999885
No 7
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=190.51 Aligned_cols=117 Identities=37% Similarity=0.727 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCcccccccccccc
Q 033095 10 MDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWAGIFS 89 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~ 89 (127)
+..++.+|.+||++||||||+|||||.++++++++.+++||+||.|+|+++...+....||+...........+|.+.+.
T Consensus 33 ~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~gY~~~~~~~~~~~~~w~d~~~ 112 (322)
T KOG0143|consen 33 REEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRGYGTSFILSPLKELDWRDYLT 112 (322)
T ss_pred HHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCcccccccccccccccccchhhee
Confidence 56778889999999999999999999999999999999999999999999987654668998876554446789999998
Q ss_pred ccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 90 MITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 90 ~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
+...|.....++.||+.++.||++|++|.++|.+|+.
T Consensus 113 ~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~ 149 (322)
T KOG0143|consen 113 LLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSE 149 (322)
T ss_pred eeccCccccCcccCccccHHHHHHHHHHHHHHHHHHH
Confidence 7766654456889999999999999999999999986
No 8
>PLN02276 gibberellin 20-oxidase
Probab=99.97 E-value=1.4e-30 Score=193.66 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=101.9
Q ss_pred CCCccCcc--chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCc
Q 033095 1 MQSLLYEE--SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSE 78 (127)
Q Consensus 1 ~~~l~~~~--~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~ 78 (127)
|+.|.+++ .|.+++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++...+...+||........
T Consensus 46 ls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~ 125 (361)
T PLN02276 46 LGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGYASSHTGRF 125 (361)
T ss_pred ChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccccCccCcccc
Confidence 34555544 3567788899999999999999999999999999999999999999999998765556789987654444
Q ss_pred cccccccccccccccCCC-------CCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 79 EQKLDWAGIFSMITLPVH-------QRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 79 ~~~~d~~E~~~~~~~p~~-------~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
.+..||+|.|.++..+.. ...+|.||...++||+++++|+.+|.+|+.
T Consensus 126 ~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~~~~~l~~ 180 (361)
T PLN02276 126 SSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAMKTLSL 180 (361)
T ss_pred CCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 456799999998754321 123467887778899999999999999985
No 9
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=99.97 E-value=1.5e-30 Score=193.44 Aligned_cols=126 Identities=29% Similarity=0.601 Sum_probs=102.3
Q ss_pred CCCccCcc--chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCC--CCcccccccccc
Q 033095 1 MQSLLYEE--SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHP--GDVEGFGQAFVV 76 (127)
Q Consensus 1 ~~~l~~~~--~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~--~~~~GY~~~~~~ 76 (127)
|+.|.+++ .|.+++++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++.... ..++||+.....
T Consensus 53 ls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~ 132 (360)
T PLN03178 53 LSNIESDDEVVREACVEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAA 132 (360)
T ss_pred chhhcCCChhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCcccccccccc
Confidence 34555555 26678888999999999999999999999999999999999999999999987643 246899765433
Q ss_pred CccccccccccccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 77 SEEQKLDWAGIFSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 77 ~~~~~~d~~E~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
...+..||+|.+.....|.....+|.||+.+|+||+++++|+++|.+|+.
T Consensus 133 ~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~ 182 (360)
T PLN03178 133 NASGQLEWEDYFFHLTLPEDKRDPSLWPKTPPDYVPATSEYSRSLRSLAT 182 (360)
T ss_pred ccccccchhHhhccccCCccccccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 33456799998866444543345799999899999999999999999986
No 10
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=99.97 E-value=2.1e-30 Score=192.29 Aligned_cols=115 Identities=24% Similarity=0.486 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCccccccccccccc
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWAGIFSM 90 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~ 90 (127)
...+++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++...+..+.||+...........||+|.|.+
T Consensus 65 ~~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~ 144 (358)
T PLN02254 65 PNALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTI 144 (358)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEe
Confidence 35677899999999999999999999999999999999999999999998765556789977654334456799999988
Q ss_pred cccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 91 ITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 91 ~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
...|. ...+|.||+.+++||+++++|+++|.+|++
T Consensus 145 ~~~p~-~~~~~~wP~~~~~fr~~~~~Y~~~~~~L~~ 179 (358)
T PLN02254 145 MGSPL-EHARQLWPQDHTKFCDVMEEYQKEMKKLAE 179 (358)
T ss_pred ecCcc-ccchhhCCCCchHHHHHHHHHHHHHHHHHH
Confidence 65553 224789999999999999999999999986
No 11
>PTZ00273 oxidase reductase; Provisional
Probab=99.97 E-value=5.8e-30 Score=187.81 Aligned_cols=125 Identities=29% Similarity=0.344 Sum_probs=101.5
Q ss_pred CCccCcc--chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccC-CCCccccccccccC-
Q 033095 2 QSLLYEE--SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQH-PGDVEGFGQAFVVS- 77 (127)
Q Consensus 2 ~~l~~~~--~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~-~~~~~GY~~~~~~~- 77 (127)
+.|.+++ .+.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... +...+||.+.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~GY~~~~~e~~ 91 (320)
T PTZ00273 12 SPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRGYGAFGAEQL 91 (320)
T ss_pred HHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCCCCCcccccc
Confidence 4555555 3566778899999999999999999999999999999999999999999998654 34578998765432
Q ss_pred -cccccccccccccccc-CC---------CCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 78 -EEQKLDWAGIFSMITL-PV---------HQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 78 -~~~~~d~~E~~~~~~~-p~---------~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
.....||+|+|.++.. |. ....+|.||+.+|+||+++++|+++|.+|++
T Consensus 92 ~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~ 151 (320)
T PTZ00273 92 DPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALAL 151 (320)
T ss_pred CCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 2345799999988642 21 1235899999889999999999999999986
No 12
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.96 E-value=1.8e-29 Score=186.70 Aligned_cols=115 Identities=27% Similarity=0.498 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCcccccccccccc
Q 033095 10 MDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWAGIFS 89 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~ 89 (127)
|.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.......+||.... ...+..||+|.|+
T Consensus 40 ~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~~--~~~~~~d~kE~~~ 117 (345)
T PLN02750 40 KTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRDEVNPMGYHDSE--HTKNIRDWKEVFD 117 (345)
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccCcCccc--ccccCCCceeEEE
Confidence 56777889999999999999999999999999999999999999999999866544457996432 2234569999998
Q ss_pred cccc-----CC-----C---CCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 90 MITL-----PV-----H---QRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 90 ~~~~-----p~-----~---~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
++.. |. . ...+|.||+.+++||+++++|+++|.+|+.
T Consensus 118 ~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~ 167 (345)
T PLN02750 118 FLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYARQVEKLAF 167 (345)
T ss_pred EeecccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 8642 10 0 012689999889999999999999999986
No 13
>PLN02485 oxidoreductase
Probab=99.96 E-value=2.6e-29 Score=184.95 Aligned_cols=117 Identities=23% Similarity=0.336 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCC-CCccccccccccCccccccccccc
Q 033095 10 MDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHP-GDVEGFGQAFVVSEEQKLDWAGIF 88 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~-~~~~GY~~~~~~~~~~~~d~~E~~ 88 (127)
|.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++...+ ...+||.+.+.....+..||+|.|
T Consensus 31 ~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~~~~~rGY~~~g~~~~~~~~d~~E~~ 110 (329)
T PLN02485 31 VAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMTPAAGYRGYQRIGENVTKGKPDMHEAI 110 (329)
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcccCCCCCCCcccccccccCCCCCcchhh
Confidence 4567888999999999999999999999999999999999999999999986543 346899877644445667999999
Q ss_pred ccccc--CC-------CCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 89 SMITL--PV-------HQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 89 ~~~~~--p~-------~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
.+... +. ....+|.||+.+|+||+++++|+++|.+|++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~ 157 (329)
T PLN02485 111 DCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSR 157 (329)
T ss_pred hhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 87531 11 1235899999899999999999999999986
No 14
>PLN02947 oxidoreductase
Probab=99.96 E-value=4.3e-29 Score=186.13 Aligned_cols=123 Identities=26% Similarity=0.430 Sum_probs=97.9
Q ss_pred CCccCccchHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCC-CCccccccccccCccc
Q 033095 2 QSLLYEESMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHP-GDVEGFGQAFVVSEEQ 80 (127)
Q Consensus 2 ~~l~~~~~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~-~~~~GY~~~~~~~~~~ 80 (127)
+.|.+. .|.+++++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++.... ....||+.........
T Consensus 73 s~l~~~-~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~ 151 (374)
T PLN02947 73 AELRGS-NRPHVLATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDA 151 (374)
T ss_pred cccCCc-cHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeecccccccccc
Confidence 444432 35678888999999999999999999999999999999999999999999985432 2345776433222345
Q ss_pred cccccccccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 81 KLDWAGIFSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 81 ~~d~~E~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
..+|+|.+.+...|.. ..+|.||+.+++||+++++|+++|.+|+.
T Consensus 152 ~~~~~e~~~~~~~p~~-~~~~~WP~~~~~fr~~~~~Y~~~~~~L~~ 196 (374)
T PLN02947 152 VFCWRDFLKLVCHPLS-DVLPHWPSSPADLRKVAATYAKATKRLFL 196 (374)
T ss_pred ccCceeceeeecCCcc-cccccCccchHHHHHHHHHHHHHHHHHHH
Confidence 6799999887655532 23688999999999999999999999985
No 15
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.96 E-value=2.4e-29 Score=159.91 Aligned_cols=97 Identities=32% Similarity=0.604 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCccc-ccccccc
Q 033095 9 SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQ-KLDWAGI 87 (127)
Q Consensus 9 ~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~-~~d~~E~ 87 (127)
.|.+++++|.+||++||||||+||||+.++++++++++++||+||.++|+++... ..++||.+.+.+...+ ..||+|+
T Consensus 12 ~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~Gy~~~~~~~~~~~~~d~~E~ 90 (116)
T PF14226_consen 12 DREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARS-PSYRGYSPPGSESTDGGKPDWKES 90 (116)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCC-TTCSEEEESEEECCTTCCCCSEEE
T ss_pred cHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCC-CCCcccccCCccccCCCCCCceEE
Confidence 3678888999999999999999999999999999999999999999999999544 4789999987665554 8999999
Q ss_pred cccccc-CCC------CCCCCCCCCC
Q 033095 88 FSMITL-PVH------QRKPHLFPKL 106 (127)
Q Consensus 88 ~~~~~~-p~~------~~~~~~wP~~ 106 (127)
|+++.. |.. ...+|+||++
T Consensus 91 ~~~~~~~~~~~p~~~~~~~~n~WP~~ 116 (116)
T PF14226_consen 91 FNIGPDLPEDDPAYPPLYGPNIWPDE 116 (116)
T ss_dssp EEEECC-STTCHHTGCTS-GGGS-TT
T ss_pred eEEECCCCccccccccccCCCCCCCC
Confidence 999875 322 3678999963
No 16
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.96 E-value=6.7e-29 Score=183.77 Aligned_cols=122 Identities=22% Similarity=0.330 Sum_probs=94.8
Q ss_pred CCccCccchHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccC-CCC-ccccccccccCcc
Q 033095 2 QSLLYEESMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQH-PGD-VEGFGQAFVVSEE 79 (127)
Q Consensus 2 ~~l~~~~~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~-~~~-~~GY~~~~~~~~~ 79 (127)
++|.+++ +++++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++... +.. .+||.... ....
T Consensus 48 s~~~~~~-~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~-~~~~ 125 (348)
T PLN02912 48 RDLHGPN-RADIINQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFN-VSKE 125 (348)
T ss_pred cccCCcC-HHHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCccccccccc-cccc
Confidence 4444444 566778899999999999999999999999999999999999999999996432 222 23343322 2234
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 80 QKLDWAGIFSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 80 ~~~d~~E~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
...||+|.+.+...|.. ..+|.||+.+++||+++++|+++|.+|+.
T Consensus 126 ~~~~~~e~~~~~~~~~~-~~~n~wP~~~~~fr~~~~~y~~~~~~l~~ 171 (348)
T PLN02912 126 KVSNWRDFLRLHCYPIE-DFIEEWPSTPISFREVTAEYATSVRALVL 171 (348)
T ss_pred ccCCchheEEEeecCcc-cccccCcchhHHHHHHHHHHHHHHHHHHH
Confidence 46799999887644431 24689999999999999999999999986
No 17
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.96 E-value=1.2e-28 Score=181.57 Aligned_cols=116 Identities=24% Similarity=0.381 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCcc----cccccc
Q 033095 10 MDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEE----QKLDWA 85 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~----~~~d~~ 85 (127)
+..++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++... ..++||.+.+.+... ...||+
T Consensus 25 ~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~-~~~~GY~~~~~e~~~~~~~~~~d~k 103 (332)
T PLN03002 25 LNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRN-EKHRGYTPVLDEKLDPKNQINGDHK 103 (332)
T ss_pred HHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC-CCCCCcCcccccccccccCCCCcce
Confidence 456777899999999999999999999999999999999999999999998654 357899876543211 236999
Q ss_pred cccccccc-CCC-------CCCCCCCCCC--CcchHHHHHHHHHHHHhhhh
Q 033095 86 GIFSMITL-PVH-------QRKPHLFPKL--PPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 86 E~~~~~~~-p~~-------~~~~~~wP~~--~~~fr~~~~~y~~~~~~la~ 126 (127)
|.|+++.. |.. ...+|.||+. +|+||+++++|+++|.+|+.
T Consensus 104 E~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~ 154 (332)
T PLN03002 104 EGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSM 154 (332)
T ss_pred eeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHH
Confidence 99988742 211 1357999974 68999999999999999985
No 18
>PLN02904 oxidoreductase
Probab=99.96 E-value=1e-28 Score=183.29 Aligned_cols=124 Identities=20% Similarity=0.376 Sum_probs=95.1
Q ss_pred CCccCccchHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCC-CCccccccccccCccc
Q 033095 2 QSLLYEESMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHP-GDVEGFGQAFVVSEEQ 80 (127)
Q Consensus 2 ~~l~~~~~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~-~~~~GY~~~~~~~~~~ 80 (127)
+.+.+++.|++++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... ....||+.........
T Consensus 58 s~~~~~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~ 137 (357)
T PLN02904 58 SLLHDPLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDR 137 (357)
T ss_pred cccCCchhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCC
Confidence 344443346677888999999999999999999999999999999999999999999986532 2334565432222234
Q ss_pred cccccccccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 81 KLDWAGIFSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 81 ~~d~~E~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
..+|+|.+.....|. ...+|.||+.+|+||+++++|+++|.+|+.
T Consensus 138 ~~~~~d~~~~~~~p~-~~~~n~WP~~~p~fr~~~~~y~~~~~~l~~ 182 (357)
T PLN02904 138 VHYWRDFIKHYSHPL-SKWINLWPSNPPCYKEKVGKYAEATHVLHK 182 (357)
T ss_pred CCCceEEeeeccCCc-ccccccCcccchHHHHHHHHHHHHHHHHHH
Confidence 458998776543343 223689999889999999999999999986
No 19
>PLN02997 flavonol synthase
Probab=99.96 E-value=1.6e-28 Score=180.23 Aligned_cols=113 Identities=25% Similarity=0.398 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCcccccccccccc
Q 033095 10 MDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWAGIFS 89 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~ 89 (127)
+.+++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++... ...+||..... .+..||+|.+.
T Consensus 43 ~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~-~~~~GY~~~~~---~~~~d~~e~~~ 118 (325)
T PLN02997 43 EDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKE-EDFEGYKRNYL---GGINNWDEHLF 118 (325)
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC-CCccccCcccc---cCCCCccceeE
Confidence 456778899999999999999999999999999999999999999999998653 34689986542 45668999876
Q ss_pred ccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 90 MITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 90 ~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
....|......|.||+.+|+||+++++|+.+|.+|+.
T Consensus 119 ~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~ 155 (325)
T PLN02997 119 HRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTE 155 (325)
T ss_pred eeecCccccccccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 5433433334689999999999999999999999986
No 20
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=99.96 E-value=2.6e-28 Score=178.95 Aligned_cols=111 Identities=26% Similarity=0.483 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCccccccccccc
Q 033095 9 SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWAGIF 88 (127)
Q Consensus 9 ~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~ 88 (127)
++++++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++... .+||.+.... .+..||+|.|
T Consensus 19 ~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~---~~gy~~~~~~--~~~~d~ke~~ 93 (321)
T PLN02299 19 ERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVA---SKGLEGVQTE--VEDLDWESTF 93 (321)
T ss_pred cHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccC---CCCccccccc--CCCcCHHHHc
Confidence 3667788899999999999999999999999999999999999999999997532 3677654321 2456999999
Q ss_pred cccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 89 SMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 89 ~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
.+...|.. ..+.||+.+++||+++++|+++|.+|+.
T Consensus 94 ~~~~~~~~--~~~~wP~~~~~fr~~~~~y~~~~~~l~~ 129 (321)
T PLN02299 94 FLRHLPES--NLADIPDLDDEYRKVMKDFALELEKLAE 129 (321)
T ss_pred ccccCCcc--ccccCccccHHHHHHHHHHHHHHHHHHH
Confidence 88644432 3578999899999999999999999985
No 21
>PLN02704 flavonol synthase
Probab=99.95 E-value=4.7e-28 Score=178.60 Aligned_cols=117 Identities=32% Similarity=0.484 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCC--CCccccccccccCcccccccccc
Q 033095 10 MDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHP--GDVEGFGQAFVVSEEQKLDWAGI 87 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~ 87 (127)
+.+++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++.... ..++||+...........+|+|.
T Consensus 53 ~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~ 132 (335)
T PLN02704 53 EEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDH 132 (335)
T ss_pred HHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceee
Confidence 4567778999999999999999999999999999999999999999999987643 24689976544334556788887
Q ss_pred ccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 88 FSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 88 ~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
+.....|.....+|.||+.+|+||+++++|+.+|.+|+.
T Consensus 133 ~~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~ 171 (335)
T PLN02704 133 LFHRIWPPSAINYQFWPKNPPSYREVNEEYAKYLRGVAD 171 (335)
T ss_pred eEeeecCCcccchhhCccccchhHHHHHHHHHHHHHHHH
Confidence 754333322223589999889999999999999999986
No 22
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.95 E-value=2.1e-27 Score=175.26 Aligned_cols=115 Identities=23% Similarity=0.423 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCC-CC-ccccccccccCcccccccccc
Q 033095 10 MDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHP-GD-VEGFGQAFVVSEEQKLDWAGI 87 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~-~~-~~GY~~~~~~~~~~~~d~~E~ 87 (127)
+.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... .. ..+|.... .......+|+|.
T Consensus 48 ~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~ 126 (337)
T PLN02639 48 RAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFN-VRKEKVHNWRDY 126 (337)
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccCCCCccccccccc-cccCcccCchhe
Confidence 5677888999999999999999999999999999999999999999999976432 22 23333222 223345699999
Q ss_pred ccccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 88 FSMITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 88 ~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
+.+...|.. ..+|.||+.+|+||+++++|+++|.+|+.
T Consensus 127 ~~~~~~p~~-~~~n~wP~~~~~fr~~~~~y~~~~~~l~~ 164 (337)
T PLN02639 127 LRLHCYPLD-KYVPEWPSNPPSFKEIVSTYCREVRELGF 164 (337)
T ss_pred EEeeecCCc-ccchhCcccchHHHHHHHHHHHHHHHHHH
Confidence 987655532 23688999889999999999999999986
No 23
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=99.94 E-value=5.7e-27 Score=170.62 Aligned_cols=109 Identities=25% Similarity=0.421 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCcccccccccccc
Q 033095 10 MDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWAGIFS 89 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~ 89 (127)
|++++++|.+||++||||||+|||||.++++++++.+++||+||.++|.. ... ...++...+ ..+..||+|.|.
T Consensus 16 ~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~-~~~--~~~~~~~~~---~~~~~d~kE~~~ 89 (303)
T PLN02403 16 RSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFY-ESE--IAKALDNEG---KTSDVDWESSFF 89 (303)
T ss_pred HHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhh-ccc--ccCcccccC---CCCCccHhhhcc
Confidence 56778889999999999999999999999999999999999999999962 211 111221111 133569999999
Q ss_pred ccccCCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 90 MITLPVHQRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 90 ~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
++..|.. ..|.||+.+|+||+++++|+++|.+|+.
T Consensus 90 ~~~~p~~--~~~~wP~~~p~fr~~~~~y~~~~~~l~~ 124 (303)
T PLN02403 90 IWHRPTS--NINEIPNLSEDLRKTMDEYIAQLIKLAE 124 (303)
T ss_pred cccCCcc--chhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 8755532 4678998889999999999999999985
No 24
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=99.94 E-value=6.4e-27 Score=172.33 Aligned_cols=111 Identities=23% Similarity=0.412 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCccccccccccccccc
Q 033095 13 ELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWAGIFSMIT 92 (127)
Q Consensus 13 ~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~ 92 (127)
..++|.+||++||||||+|||||.++++++++++++||+||.|+|+++... ...||+.... ......+|+|.|.+..
T Consensus 37 ~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~--~~~Gy~~~~~-~~~~~~~~~e~~~~~~ 113 (335)
T PLN02156 37 AKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP--DPFGYGTKRI-GPNGDVGWLEYILLNA 113 (335)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC--CCcccCcccc-CCCCCCCceeeEeeec
Confidence 456899999999999999999999999999999999999999999998543 3458864321 2233569999998875
Q ss_pred cCCC--CCCCCCCCCCCcchHHHHHHHHHHHHhhhh
Q 033095 93 LPVH--QRKPHLFPKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 93 ~p~~--~~~~~~wP~~~~~fr~~~~~y~~~~~~la~ 126 (127)
.+.. ...+|.||..+++||+++++|+++|.+|++
T Consensus 114 ~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~ 149 (335)
T PLN02156 114 NLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSS 149 (335)
T ss_pred CCccccccchhcCccccHHHHHHHHHHHHHHHHHHH
Confidence 4421 124688999889999999999999999986
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=99.92 E-value=1.8e-24 Score=157.47 Aligned_cols=107 Identities=21% Similarity=0.327 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccccccCccccccccccccccc
Q 033095 13 ELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWAGIFSMIT 92 (127)
Q Consensus 13 ~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~ 92 (127)
.+++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...+||...+. ..+++|.|.+..
T Consensus 17 ~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~-~~~~GY~~~~~-----~~~~~e~~~~~~ 90 (300)
T PLN02365 17 QIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDV-ILGSGYMAPSE-----VNPLYEALGLYD 90 (300)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCC-CCCCCCCCcCC-----CCCchhheeccc
Confidence 457899999999999999999999999999999999999999999996432 34579976542 236889887652
Q ss_pred cCCCCCCCCCCC---CCCcchHHHHHHHHHHHHhhhh
Q 033095 93 LPVHQRKPHLFP---KLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 93 ~p~~~~~~~~wP---~~~~~fr~~~~~y~~~~~~la~ 126 (127)
... ...++.|| ..+|+||+++++|+++|.+|+.
T Consensus 91 ~~~-~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~ 126 (300)
T PLN02365 91 MAS-PQAVDTFCSQLDASPHQRETIKKYAKAIHDLAM 126 (300)
T ss_pred ccC-chhhhhccccCCCCchHHHHHHHHHHHHHHHHH
Confidence 111 00123344 2467999999999999999986
No 26
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.91 E-value=2.1e-24 Score=159.40 Aligned_cols=112 Identities=21% Similarity=0.351 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCC---Ccccccccccc---C----ccccc
Q 033095 13 ELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPG---DVEGFGQAFVV---S----EEQKL 82 (127)
Q Consensus 13 ~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~---~~~GY~~~~~~---~----~~~~~ 82 (127)
.+++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++..... ...||...... . .....
T Consensus 48 ~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 127 (341)
T PLN02984 48 DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGTPALTPSGKALSRGPQESNV 127 (341)
T ss_pred HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCcccccccccccccccccCCC
Confidence 35689999999999999999999999999999999999999999999752111 11232211111 0 11256
Q ss_pred cccccccccccCCCCCCCCCC---CCCCcchHHHHHHHHHHHHhhhh
Q 033095 83 DWAGIFSMITLPVHQRKPHLF---PKLPPSLRFSLFVLDMDLQAKSE 126 (127)
Q Consensus 83 d~~E~~~~~~~p~~~~~~~~w---P~~~~~fr~~~~~y~~~~~~la~ 126 (127)
||+|+|.++..+... .+.| |..+|+||+++++|+.+|.+|++
T Consensus 128 D~kE~f~~~~~~~~~--~~~~p~~~~~~p~fr~~~~~y~~~~~~La~ 172 (341)
T PLN02984 128 NWVEGFNIPLSSLSL--LQTLSCSDPKLESFRVLMEEYGKHLTRIAV 172 (341)
T ss_pred CeeeEEeCcCCchhh--hhhcCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999986432111 1112 23457999999999999999986
No 27
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.89 E-value=8.5e-23 Score=130.47 Aligned_cols=72 Identities=31% Similarity=0.476 Sum_probs=61.3
Q ss_pred CCccCcc-chHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhccCCCCccccccc
Q 033095 2 QSLLYEE-SMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQHPGDVEGFGQA 73 (127)
Q Consensus 2 ~~l~~~~-~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~~~~~~~GY~~~ 73 (127)
+.+.+++ .+.+.+++|.+||++||||||+||||+.++++++++.+++||+||.++|+++...++...||+..
T Consensus 44 s~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~LP~e~K~k~~~~~~~~~gy~~~ 116 (120)
T PLN03176 44 AGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEEKLRFDMSGGKKGGFIVS 116 (120)
T ss_pred ccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHhcccCCCccCCcchh
Confidence 4455444 35567888999999999999999999999999999999999999999999997766566788654
No 28
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.58 E-value=3.4e-15 Score=107.03 Aligned_cols=85 Identities=29% Similarity=0.589 Sum_probs=65.8
Q ss_pred HHHHHHHHhc-CCHHHHhhhccCCC--Ccccccccccc--CccccccccccccccccCCCCCCCCCCCCCCcchHHHHHH
Q 033095 42 VKKKVKGFFN-LSMEEKKKYWQHPG--DVEGFGQAFVV--SEEQKLDWAGIFSMITLPVHQRKPHLFPKLPPSLRFSLFV 116 (127)
Q Consensus 42 ~~~~~~~fF~-lp~eeK~~~~~~~~--~~~GY~~~~~~--~~~~~~d~~E~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~ 116 (127)
|...+++||+ ||.|+|+++..... .++||+..... ...+..||+|+|.+...|.....+|.||+.+|+||+++++
T Consensus 1 ~~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~ 80 (262)
T PLN03001 1 MRSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGE 80 (262)
T ss_pred ChHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHH
Confidence 3578899997 99999999876532 46899654322 1234569999999865554334579999999999999999
Q ss_pred HHHHHHhhhh
Q 033095 117 LDMDLQAKSE 126 (127)
Q Consensus 117 y~~~~~~la~ 126 (127)
|+++|.+|++
T Consensus 81 y~~~~~~l~~ 90 (262)
T PLN03001 81 YGDCMKALAQ 90 (262)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 29
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=66.31 E-value=11 Score=27.74 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=23.7
Q ss_pred HHHHHHhcceeEEecCCCCHHHHHHHHHHHH
Q 033095 17 LDFACKEWGFFQLVNHGVISAFLEKVKKKVK 47 (127)
Q Consensus 17 l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~ 47 (127)
..+++++.|||.|.| +|..++.++.+...
T Consensus 17 Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 17 ALRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 567899999999998 68888887777655
No 30
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=66.05 E-value=22 Score=25.70 Aligned_cols=40 Identities=35% Similarity=0.446 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcce--eEEec-CCCCHHHHHHHHHHHHHHhc
Q 033095 12 SELAKLDFACKEWGF--FQLVN-HGVISAFLEKVKKKVKGFFN 51 (127)
Q Consensus 12 ~~~~~l~~A~~~~GF--f~l~n-hGi~~~~~~~~~~~~~~fF~ 51 (127)
..+..+.+++..+|| |+++| ||=....+..+.+..+..+.
T Consensus 90 ~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 90 ALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 455668999999999 66665 89877777777766666554
No 31
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=64.79 E-value=3.9 Score=19.15 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=11.7
Q ss_pred eEEecCCCCHHHHHHH
Q 033095 27 FQLVNHGVISAFLEKV 42 (127)
Q Consensus 27 f~l~nhGi~~~~~~~~ 42 (127)
.||+.||++.+.+..-
T Consensus 9 rYV~eh~ls~ee~~~R 24 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAER 24 (28)
T ss_pred hhHHhcCCCHHHHHHH
Confidence 4788999998765543
No 32
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=63.23 E-value=6.7 Score=23.11 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.5
Q ss_pred HHHHHHHHhcceeEEecCCCC
Q 033095 15 AKLDFACKEWGFFQLVNHGVI 35 (127)
Q Consensus 15 ~~l~~A~~~~GFf~l~nhGi~ 35 (127)
+.|..-|-+.||.||.-|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 458999999999999877653
No 33
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=63.20 E-value=12 Score=20.79 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcc--eeEEec------CCCCHHHHHHHHHHHHH
Q 033095 11 DSELAKLDFACKEWG--FFQLVN------HGVISAFLEKVKKKVKG 48 (127)
Q Consensus 11 ~~~~~~l~~A~~~~G--Ff~l~n------hGi~~~~~~~~~~~~~~ 48 (127)
.+.+..|.+.++++| .+.++. |||+.+.+..+++..++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 456677888888877 666664 67888888888776553
No 34
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=62.03 E-value=21 Score=18.85 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLS 53 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp 53 (127)
..+..|...+...||....-.|+-...+.++...-...+.||
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 467778888999999855556666666666666666666654
No 35
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=58.46 E-value=47 Score=21.48 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 033095 11 DSELAKLDFACKEWGFFQLVN-HGVISAFLEKVKKKVKG 48 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 48 (127)
...+.++.+.+++..++++++ +|++...+.++....+.
T Consensus 4 ~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 4 EELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 467778999999999999887 58999888888877654
No 36
>PRK15331 chaperone protein SicA; Provisional
Probab=57.71 E-value=12 Score=25.26 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcC
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNL 52 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~l 52 (127)
.+..+.|.+|..+ |=-.-.-|||+++.++.++..+..||..
T Consensus 10 ~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~~ 50 (165)
T PRK15331 10 ERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYNQ 50 (165)
T ss_pred HHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 3445558888887 4222235899999999999999999963
No 37
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=57.09 E-value=31 Score=24.27 Aligned_cols=41 Identities=22% Similarity=0.153 Sum_probs=29.1
Q ss_pred ccchHHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHH
Q 033095 7 EESMDSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVK 47 (127)
Q Consensus 7 ~~~r~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~ 47 (127)
|..+.++...+.+||.+.||-.=-.-||+.+-+..+.+.+.
T Consensus 159 Gl~~leE~~avAkA~a~~g~~lEPTGGIdl~N~~~I~~i~l 199 (218)
T PF07071_consen 159 GLKHLEELKAVAKACARNGFTLEPTGGIDLDNFEEIVKICL 199 (218)
T ss_dssp TTTTHHHHHHHHHHHHHCT-EEEEBSS--TTTHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCceeCCcCCcCHHHHHHHHHHHH
Confidence 33467888999999999999874456899887777777654
No 38
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.08 E-value=46 Score=22.79 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcceeEEe----------------------cCCCCHHHHHHHHHH
Q 033095 13 ELAKLDFACKEWGFFQLV----------------------NHGVISAFLEKVKKK 45 (127)
Q Consensus 13 ~~~~l~~A~~~~GFf~l~----------------------nhGi~~~~~~~~~~~ 45 (127)
...++.++|+..||..+. +|+||.+.+.+=+..
T Consensus 82 s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~r 136 (187)
T COG4185 82 SILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRR 136 (187)
T ss_pred hHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 456788899999996654 577777766654443
No 39
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=55.68 E-value=14 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcceeEEecCCC
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
.+....+.+++.+...+.|.|||+
T Consensus 139 ~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 139 PEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred HHHHHHHHHHhCcCCEEEEcCCCC
Confidence 355666899999999999999997
No 40
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=54.06 E-value=39 Score=24.05 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHH
Q 033095 9 SMDSELAKLDFACKEWGFFQLVN-HGVISAFLEKVKKKVK 47 (127)
Q Consensus 9 ~r~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~ 47 (127)
.+.++...+.+||.+.||- +-- -||+.+-+..+.+.+.
T Consensus 161 ~~leE~~avA~aca~~g~~-lEPTGGIdl~Nf~~I~~i~l 199 (236)
T TIGR03581 161 KHLEEYAAVAKACAKHGFY-LEPTGGIDLDNFEEIVQIAL 199 (236)
T ss_pred ccHHHHHHHHHHHHHcCCc-cCCCCCccHHhHHHHHHHHH
Confidence 3567888899999999984 544 4799887777776654
No 41
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=52.18 E-value=25 Score=20.77 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHhh
Q 033095 36 SAFLEKVKKKVKGFFNLSMEEKKK 59 (127)
Q Consensus 36 ~~~~~~~~~~~~~fF~lp~eeK~~ 59 (127)
.++++.+...-..|.+||.|+|..
T Consensus 20 sEVL~~~k~N~D~~~aL~~ETKaE 43 (97)
T PF11043_consen 20 SEVLDNIKNNYDAFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCChhhHHH
Confidence 467788888888999999999965
No 42
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=50.50 E-value=23 Score=23.86 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcceeEEecCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
+.++.+.+++.+.-.+.|.|||+
T Consensus 127 ~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 127 ELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred HHHHHHHHHHhhCCEEEEcCCCc
Confidence 45556888888888999999997
No 43
>PRK08130 putative aldolase; Validated
Probab=49.40 E-value=21 Score=24.77 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcceeEEecCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
+.+..+.+++.+...+.+.|||+
T Consensus 140 ~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 140 AIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred HHHHHHHHHhccCCEEEEcCCCC
Confidence 45556888999999999999997
No 44
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=49.39 E-value=22 Score=24.06 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcceeEEecCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
+.+..+.+++.+..-+.|.|||+
T Consensus 133 ~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 133 ELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred HHHHHHHHHhccCCEEEEcCCCC
Confidence 45556888888888899999997
No 45
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=49.00 E-value=19 Score=27.89 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcceeEEe--cCCCCH
Q 033095 11 DSELAKLDFACKEWGFFQLV--NHGVIS 36 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~--nhGi~~ 36 (127)
+.++.+|.+||+..|+.+++ .||-..
T Consensus 435 D~aig~Iy~A~~~~~y~lvvTADHGNAE 462 (531)
T KOG4513|consen 435 DEAIGKIYDAIEQVGYILVVTADHGNAE 462 (531)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCCCCHH
Confidence 45677899999999999998 588643
No 46
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=48.72 E-value=65 Score=21.72 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 033095 11 DSELAKLDFACKEWGFFQLVN-HGVISAFLEKVKKKVKG 48 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 48 (127)
.+.+++|.+.+.++-.++|++ .|++...+.++.+..+.
T Consensus 4 ~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 4 KEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 467888999999999888886 79999999999888774
No 47
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=48.68 E-value=57 Score=21.73 Aligned_cols=38 Identities=8% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 033095 11 DSELAKLDFACKEWGFFQLVN-HGVISAFLEKVKKKVKG 48 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 48 (127)
.+.+++|.+.+.++-.++|++ +|++...+.++.+..+.
T Consensus 4 ~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~ 42 (163)
T cd05796 4 QKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD 42 (163)
T ss_pred HHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcC
Confidence 467888999999988777775 79999999999888764
No 48
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=48.13 E-value=80 Score=21.39 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHHH
Q 033095 10 MDSELAKLDFACKEWGFFQLVN-HGVISAFLEKVKKKVKGF 49 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~f 49 (127)
..+.+++|.+.+++...|.|++ +|++...+.++.+..++-
T Consensus 8 K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~ 48 (175)
T COG0244 8 KKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREA 48 (175)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhC
Confidence 3577888999999888877776 799999999998887753
No 49
>PRK06661 hypothetical protein; Provisional
Probab=47.93 E-value=20 Score=25.31 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcceeEEecCCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVI 35 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~ 35 (127)
+..+.|.+++.+...+.+.|||+=
T Consensus 138 ~~~~~~a~~l~~~~avll~nHG~v 161 (231)
T PRK06661 138 KQSSRLVNDLKQNYVMLLRNHGAI 161 (231)
T ss_pred hHHHHHHHHhCCCCEEEECCCCCe
Confidence 456668899999999999999973
No 50
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=47.06 E-value=63 Score=23.59 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcceeEEe-------cCCCCHHHHHHHHHHHHHHhcCCHHHH
Q 033095 12 SELAKLDFACKEWGFFQLV-------NHGVISAFLEKVKKKVKGFFNLSMEEK 57 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~-------nhGi~~~~~~~~~~~~~~fF~lp~eeK 57 (127)
..+..|.+-|.++|.=+|. |-.=|.+.++.++..+++-+..+.+..
T Consensus 67 ~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~~~~~~~ 119 (271)
T KOG1602|consen 67 EALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIERLLEQG 119 (271)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567799999999976654 778889999999999999999887774
No 51
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=45.69 E-value=70 Score=23.98 Aligned_cols=39 Identities=21% Similarity=0.452 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 033095 10 MDSELAKLDFACKEWGFFQLVN-HGVISAFLEKVKKKVKG 48 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 48 (127)
..+.+.+|.+.+.++..++|++ +|++...+.++.+..+.
T Consensus 8 K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~ 47 (330)
T PRK04019 8 KKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRG 47 (330)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHc
Confidence 3577888999999999999887 79999999999888775
No 52
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=44.30 E-value=58 Score=22.59 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHH
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGF 49 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~f 49 (127)
..+++|.+++.+.||+.|.|-.++.+.+ .+.+..|
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~---~~~~~~~ 58 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQF---EALASRL 58 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHH---HHHHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHH---HHHHHhh
Confidence 4777899999999999999887755444 3444455
No 53
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=43.78 E-value=29 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcceeEEecCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
+....+.+++.+...+.+.|||+
T Consensus 137 ~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 137 ELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred HHHHHHHHHhCcCCEEEECCCCC
Confidence 34455888888889999999997
No 54
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=42.40 E-value=61 Score=18.72 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHH
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKK 45 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~ 45 (127)
...+..|..+++.+||..-.-||.-.+...+++..
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~ 49 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDALRA 49 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHH
Confidence 45677799999999998888888766655555543
No 55
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.30 E-value=61 Score=23.69 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcceeEEecC----CCCHH---HHHHHHHHHHHHhcC
Q 033095 12 SELAKLDFACKEWGFFQLVNH----GVISA---FLEKVKKKVKGFFNL 52 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nh----Gi~~~---~~~~~~~~~~~fF~l 52 (127)
+.+.+|.++++ ||.|++.- |+... .+.+..+..|++.++
T Consensus 161 ~rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~ 206 (265)
T COG0159 161 ERLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDV 206 (265)
T ss_pred HHHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhcCC
Confidence 44455555544 88887753 33222 355566655555544
No 56
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=42.02 E-value=45 Score=18.32 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=22.1
Q ss_pred cCCCCHHHHHHHHH--HHHHHhc-CCHHHHhhhc
Q 033095 31 NHGVISAFLEKVKK--KVKGFFN-LSMEEKKKYW 61 (127)
Q Consensus 31 nhGi~~~~~~~~~~--~~~~fF~-lp~eeK~~~~ 61 (127)
+.-||.++...+.+ .+.+||. ||...+..+.
T Consensus 3 ~~~vP~dl~~aL~~~p~a~~~f~~l~~~~rr~~i 36 (63)
T PF13376_consen 3 EVEVPEDLEAALEANPEAKEFFESLTPSYRREYI 36 (63)
T ss_pred CCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
Confidence 34578888877776 6788884 7888776653
No 57
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=42.01 E-value=35 Score=23.58 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcc---eeEEecCCC
Q 033095 11 DSELAKLDFACKEWG---FFQLVNHGV 34 (127)
Q Consensus 11 ~~~~~~l~~A~~~~G---Ff~l~nhGi 34 (127)
.+.+..+.+++.+.. .+.|.|||+
T Consensus 145 ~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 145 ARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 345556888888764 799999997
No 58
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=40.60 E-value=31 Score=23.88 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=18.2
Q ss_pred HHHHHHHHHHH-hcceeEEecCCC
Q 033095 12 SELAKLDFACK-EWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~-~~GFf~l~nhGi 34 (127)
+.+..+.++.+ +..-+.+.|||+
T Consensus 149 eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 149 TLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred HHHHHHHHHhccCCcEEEECCCce
Confidence 45556888887 778899999996
No 59
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=40.18 E-value=77 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.034 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcC
Q 033095 14 LAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNL 52 (127)
Q Consensus 14 ~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~l 52 (127)
..+-.+.+++.||+.|.+ -++.+.++++.+...+.++-
T Consensus 18 t~eqi~~f~~dGyvvl~~-vls~eev~~lr~~i~~~~~~ 55 (277)
T TIGR02408 18 SAKQLQSYERDGFLLLEN-LFSDDEVAALLAEVERMTRD 55 (277)
T ss_pred CHHHHHHHHHCCEEECcc-cCCHHHHHHHHHHHHHHHhc
Confidence 345677999999998776 48999999999999888764
No 60
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=39.33 E-value=82 Score=23.52 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcceeEEecCCCC----HHHHHHHHHHHHHH
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVI----SAFLEKVKKKVKGF 49 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~----~~~~~~~~~~~~~f 49 (127)
+.+.++.+.+..-||..-.+|||+ .+-++.+.++++++
T Consensus 303 ~~~~~~i~~~~~~gfIl~~Gc~i~~~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 303 EEVRAILDGGGGPGHIFNLGHGILPETPPENVKALVEAVHEL 344 (346)
T ss_pred HHHHHHHHHhCCCCeeeecCCcCCCCcCHHHHHHHHHHHHHh
Confidence 445566665577888888899875 57788888888874
No 61
>PRK06208 hypothetical protein; Provisional
Probab=38.97 E-value=35 Score=24.91 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcceeEEecCCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVI 35 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~ 35 (127)
+....+.+++.+..-+.+.|||+=
T Consensus 178 ela~~va~~l~~~~avLL~NHGvv 201 (274)
T PRK06208 178 SEGRRIAAALGTHKAVILQNHGLL 201 (274)
T ss_pred HHHHHHHHHhccCCEEEECCCCce
Confidence 555568888888899999999973
No 62
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=38.79 E-value=36 Score=24.77 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcceeEEecCCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVI 35 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~ 35 (127)
+.+..+.+++.+...+.+.|||+=
T Consensus 192 eLa~~v~~~l~~~~avLL~nHGvv 215 (274)
T PRK03634 192 EIGQATAEKMQKHDLVLWPKHGVF 215 (274)
T ss_pred HHHHHHHHHhccCCEEEEcCCCCe
Confidence 445568888888889999999973
No 63
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=38.72 E-value=90 Score=23.60 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHh
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFF 50 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF 50 (127)
+.+.++.+++.++|+..|.|-+++.+.+ .+.+++|-
T Consensus 115 ~~l~~~l~~l~~~G~v~~~g~~~~~~~~---~~~a~riG 150 (362)
T TIGR02410 115 STLKSFSKNIYKYGFTFVDNVPVTPEAT---EKLCERIS 150 (362)
T ss_pred HHHHHHHHHHHhhCEEEEcCCCCCHHHH---HHHHHHhc
Confidence 5677899999999999999988876544 44445553
No 64
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.66 E-value=60 Score=16.84 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHH
Q 033095 13 ELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKV 46 (127)
Q Consensus 13 ~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~ 46 (127)
.+..+.++.++.||. |++++++.+.+.+
T Consensus 20 ~~~~~l~~l~~~g~~------is~~l~~~~L~~~ 47 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFR------ISPKLIEEILRRA 47 (48)
T ss_pred hHHHHHHHHHHcCcc------cCHHHHHHHHHHc
Confidence 345567777888886 6888888776643
No 65
>PRK06486 hypothetical protein; Provisional
Probab=38.51 E-value=35 Score=24.66 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcceeEEecCCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVI 35 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~ 35 (127)
+....|.++..+...+.|.|||+=
T Consensus 163 ela~~va~al~~~~avLL~nHG~v 186 (262)
T PRK06486 163 AEGDRIARAMGDADIVFLKNHGVM 186 (262)
T ss_pred hHHHHHHHHhCcCCEEEECCCCCe
Confidence 445568888888899999999973
No 66
>PRK11460 putative hydrolase; Provisional
Probab=38.49 E-value=1.2e+02 Score=21.13 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcce---eEE---ecCCCCHHHHHHHHHHHHHHhc
Q 033095 12 SELAKLDFACKEWGF---FQL---VNHGVISAFLEKVKKKVKGFFN 51 (127)
Q Consensus 12 ~~~~~l~~A~~~~GF---f~l---~nhGi~~~~~~~~~~~~~~fF~ 51 (127)
+...++.++++..|. +.+ .+|+|+.+.++.+.+....++.
T Consensus 165 ~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 165 AHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTVP 210 (232)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHcc
Confidence 445567777776664 222 4899999888888887777763
No 67
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=38.33 E-value=1.2e+02 Score=20.21 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 033095 11 DSELAKLDFACKEWGFFQLVN-HGVISAFLEKVKKKVKG 48 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 48 (127)
.+.+.+|.+.+++.-.+++++ +|++...+.++....+.
T Consensus 7 ~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 7 KEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 467888999999988888777 58999888888887765
No 68
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=38.18 E-value=26 Score=22.75 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.9
Q ss_pred ecCCCCHHHHHHHHHHHH
Q 033095 30 VNHGVISAFLEKVKKKVK 47 (127)
Q Consensus 30 ~nhGi~~~~~~~~~~~~~ 47 (127)
.+|||..+.++.+++-++
T Consensus 114 ~~h~it~e~id~LY~~ak 131 (133)
T PF09440_consen 114 ENHGITPEMIDALYKYAK 131 (133)
T ss_pred HhcCCCHHHHHHHHHHhC
Confidence 799999999999998764
No 69
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=37.61 E-value=45 Score=22.76 Aligned_cols=23 Identities=9% Similarity=-0.023 Sum_probs=17.5
Q ss_pred HHHHHHHHHHH---hcceeEEecCCC
Q 033095 12 SELAKLDFACK---EWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~---~~GFf~l~nhGi 34 (127)
+.+..+.++++ +...+.|.|||+
T Consensus 138 ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 138 RLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 44455888885 468899999997
No 70
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=36.91 E-value=63 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=19.7
Q ss_pred HHHHHhcceeEEecCCCCHHHHHHHHH
Q 033095 18 DFACKEWGFFQLVNHGVISAFLEKVKK 44 (127)
Q Consensus 18 ~~A~~~~GFf~l~nhGi~~~~~~~~~~ 44 (127)
.+++++-|||.|.| +|++++-++.+
T Consensus 18 l~~lEDlGyycvDN--LPp~Llp~~~~ 42 (286)
T COG1660 18 LRVLEDLGYYCVDN--LPPQLLPKLAD 42 (286)
T ss_pred HHHHHhcCeeeecC--CCHHHHHHHHH
Confidence 45778999999998 67777777666
No 71
>PLN02433 uroporphyrinogen decarboxylase
Probab=36.89 E-value=95 Score=23.23 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcceeEEecCCCC----HHHHHHHHHHHHHHh
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGVI----SAFLEKVKKKVKGFF 50 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi~----~~~~~~~~~~~~~fF 50 (127)
.+.+.++.+.+..-||+.-.+|||+ .+.+..+.++++++-
T Consensus 295 ~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi~a~v~av~~~~ 338 (345)
T PLN02433 295 EKEVRDVVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVARELR 338 (345)
T ss_pred HHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 3455565665656688888889986 578888888888853
No 72
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=36.56 E-value=29 Score=21.25 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=9.9
Q ss_pred CCCCCCCCcchHHH
Q 033095 100 PHLFPKLPPSLRFS 113 (127)
Q Consensus 100 ~~~wP~~~~~fr~~ 113 (127)
|.+||+..|+..+.
T Consensus 12 P~~WPe~~PG~~ef 25 (95)
T PF10044_consen 12 PELWPEQFPGVSEF 25 (95)
T ss_pred cccCCCCCCCHHHH
Confidence 67799887775543
No 73
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=36.43 E-value=39 Score=23.45 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcceeEEecCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
+.+..+.++..+..-+.|.|||+
T Consensus 134 ~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 134 KLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred HHHHHHHHHhhhCCEEehhcCCC
Confidence 44555777777788999999997
No 74
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=36.41 E-value=30 Score=23.18 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=19.1
Q ss_pred HHHHHHHHHHH-hcceeEEecCCC
Q 033095 12 SELAKLDFACK-EWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~-~~GFf~l~nhGi 34 (127)
.....|.+++. +...+.+.|||+
T Consensus 136 ~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 136 ELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp HHHHHHHHHHTCTSSEEEETTTEE
T ss_pred hhhhhhhhhhcCCceEEeecCCce
Confidence 34466999998 889999999996
No 75
>PRK07490 hypothetical protein; Provisional
Probab=35.71 E-value=42 Score=23.96 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcceeEEecCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
+..+.|.+++.+.--+.+.|||+
T Consensus 147 ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 147 EEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred HHHHHHHHHhCcCCEEEECCCCc
Confidence 45556888888888999999997
No 76
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=35.67 E-value=68 Score=21.05 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=22.2
Q ss_pred HHhcceeEEecCCCCHHHHHHHHHHHHHH
Q 033095 21 CKEWGFFQLVNHGVISAFLEKVKKKVKGF 49 (127)
Q Consensus 21 ~~~~GFf~l~nhGi~~~~~~~~~~~~~~f 49 (127)
+++.||+.|.| -++.+.++++.+...+.
T Consensus 1 f~~~Gyvvi~~-~l~~~~~~~l~~~~~~~ 28 (211)
T PF05721_consen 1 FRRDGYVVIRN-VLSPEEVERLREELDRL 28 (211)
T ss_dssp HHHHSEEEETT-SS-HHHHHHHHHHHHHH
T ss_pred CcCCcEEEECC-cCCHHHHHHHHHHHHHH
Confidence 36789988887 68999999999888876
No 77
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=35.52 E-value=1.2e+02 Score=21.93 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcC
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNL 52 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~l 52 (127)
.+.+.+|.+|..+.|++.+.|-.++. ++..+.++.|-.+
T Consensus 27 ~~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 27 DNQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred HHHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 45677899999999999999988874 4566666777654
No 78
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=35.24 E-value=98 Score=19.92 Aligned_cols=32 Identities=16% Similarity=0.045 Sum_probs=25.6
Q ss_pred cchHHHHHHHHHHHHhc-ceeEEecCCCCHHHH
Q 033095 8 ESMDSELAKLDFACKEW-GFFQLVNHGVISAFL 39 (127)
Q Consensus 8 ~~r~~~~~~l~~A~~~~-GFf~l~nhGi~~~~~ 39 (127)
|.|...+..|.+++... |...+-|.+.....+
T Consensus 55 DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL 87 (130)
T PF11074_consen 55 DPRRELIEALIKAIGSIYGSIVVYNKSFEKTRL 87 (130)
T ss_pred CchHHHHHHHHHHhhhhcCeEEEechHHHHHHH
Confidence 45888899999999999 999999987544333
No 79
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=34.97 E-value=46 Score=24.23 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcceeEEecCCC
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
.+.+..+.+++++..-+.+.|||+
T Consensus 189 ~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 189 NEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred HHHHHHHHHHhccCCEEEEcCCCC
Confidence 355556888888888899999997
No 80
>PLN02452 phosphoserine transaminase
Probab=34.64 E-value=76 Score=24.09 Aligned_cols=37 Identities=27% Similarity=0.193 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcceeEEecCC------------CCHHHHHHHHHHHHHH
Q 033095 13 ELAKLDFACKEWGFFQLVNHG------------VISAFLEKVKKKVKGF 49 (127)
Q Consensus 13 ~~~~l~~A~~~~GFf~l~nhG------------i~~~~~~~~~~~~~~f 49 (127)
.-+++.+.|++.||..+.+|. |+.+-++++.+..++|
T Consensus 312 ~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f 360 (365)
T PLN02452 312 LEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 360 (365)
T ss_pred hHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHH
Confidence 455688999999999999983 6778888888888877
No 81
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=34.53 E-value=1.3e+02 Score=19.58 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 033095 11 DSELAKLDFACKEWGFFQLVN-HGVISAFLEKVKKKVKG 48 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 48 (127)
...+.+|.+.+++.-++++++ +|++...+.++....+.
T Consensus 6 ~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 6 EEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 467778999999998888887 58999888888887764
No 82
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=33.78 E-value=1e+02 Score=23.50 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcceeEEecCC------------CCHHHHHHHHHHHHHH
Q 033095 12 SELAKLDFACKEWGFFQLVNHG------------VISAFLEKVKKKVKGF 49 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhG------------i~~~~~~~~~~~~~~f 49 (127)
...+++.+.++..|+..|++|+ +|.+-++++.+-.++|
T Consensus 310 ~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f 359 (364)
T PRK12462 310 RLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDF 359 (364)
T ss_pred HHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4455699999999999999994 5667777777777776
No 83
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=33.24 E-value=53 Score=19.37 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcceeEEecC
Q 033095 11 DSELAKLDFACKEWGFFQLVNH 32 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nh 32 (127)
.+.++.|.++|++.|.-.|-+|
T Consensus 74 ~~~~~Gi~~~~~~~g~~ivGG~ 95 (96)
T PF00586_consen 74 KEIVKGIAEACREFGIPIVGGD 95 (96)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHHHHHHHhCCcEeCcC
Confidence 3555669999999999877665
No 84
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=33.13 E-value=52 Score=22.88 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcceeEEecCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
+....+.+++.+...+.+.|||+
T Consensus 135 ~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 135 ELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred HHHHHHHHHhCcCCEEEecCCCC
Confidence 44455888888778899999997
No 85
>PRK06357 hypothetical protein; Provisional
Probab=32.36 E-value=67 Score=22.47 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhc------ceeEEecCCC
Q 033095 12 SELAKLDFACKEW------GFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~~~------GFf~l~nhGi 34 (127)
+.+..+.+++++. ..+.+.|||+
T Consensus 143 ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 143 ELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred HHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 4444577777654 4889999997
No 86
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=32.04 E-value=1.4e+02 Score=22.55 Aligned_cols=37 Identities=22% Similarity=-0.005 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhc
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFN 51 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~ 51 (127)
..+.++.+++.++|++.|.|-+++.+. +.+.++.|-.
T Consensus 123 ~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~G~ 159 (366)
T TIGR02409 123 SVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRIGF 159 (366)
T ss_pred HHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHhcc
Confidence 456679999999999999998886653 4455555543
No 87
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=31.57 E-value=1.3e+02 Score=18.84 Aligned_cols=47 Identities=13% Similarity=-0.020 Sum_probs=31.0
Q ss_pred HHHHHHhcceeEEecC-CCC-HHHHHHHHHHHHHHhcCCHHHHhhhccCC
Q 033095 17 LDFACKEWGFFQLVNH-GVI-SAFLEKVKKKVKGFFNLSMEEKKKYWQHP 64 (127)
Q Consensus 17 l~~A~~~~GFf~l~nh-Gi~-~~~~~~~~~~~~~fF~lp~eeK~~~~~~~ 64 (127)
|..-.++.|| |...- .++ ++.++.+.+....|.+||...+..+..+|
T Consensus 14 l~~~e~Rs~~-yg~c~sp~D~qeAln~Vie~~eaFdsLPAkvRe~FgNdP 62 (114)
T TIGR02763 14 LHAFETRSPE-YGECPSPLDYQEALNIVIEGEEAFDSLPAKVRENFGNDP 62 (114)
T ss_pred HHHHHHhCCc-cccCCCchhHHHHHHHHHHHHHHHHHhhHHHHHHhCCCH
Confidence 3333455555 43333 344 46778888888899999999888876544
No 88
>PRK06770 hypothetical protein; Provisional
Probab=29.39 E-value=1.4e+02 Score=20.50 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=26.5
Q ss_pred HHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhc
Q 033095 16 KLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYW 61 (127)
Q Consensus 16 ~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~ 61 (127)
+-..|.+.|||+.+ +++-++.+...... -..++|..|.
T Consensus 82 QKV~A~~KwG~~~m-----T~enI~~l~~~i~~---sn~~~k~~yl 119 (180)
T PRK06770 82 QKVKADEKWGFIEM-----TQENIEKLKDIINS---SNFVQKEELL 119 (180)
T ss_pred hhhhhhcccceEec-----CHHHHHHHHHHHhc---cchhhHHHHH
Confidence 35579999999985 46777777666652 3356777664
No 89
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=28.99 E-value=63 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=18.2
Q ss_pred HHHHHHHHHH--HhcceeEEecCCCC
Q 033095 12 SELAKLDFAC--KEWGFFQLVNHGVI 35 (127)
Q Consensus 12 ~~~~~l~~A~--~~~GFf~l~nhGi~ 35 (127)
+....+.++. .+..-+.+.|||+-
T Consensus 143 ela~~i~~~l~~~~~~~vll~nHG~~ 168 (221)
T PRK06557 143 AIGKGIVETLKGGRSPAVLMQNHGVF 168 (221)
T ss_pred HHHHHHHHHhCcCCCCEEEECCCCce
Confidence 4455688887 67778899999973
No 90
>PF13309 HTH_22: HTH domain
Probab=28.79 E-value=62 Score=17.95 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcceeEEec
Q 033095 12 SELAKLDFACKEWGFFQLVN 31 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~n 31 (127)
..-.+|.+.+.+-|+|.+++
T Consensus 24 ~~k~~iV~~L~~~G~F~lKg 43 (64)
T PF13309_consen 24 EEKKEIVRQLYEKGIFLLKG 43 (64)
T ss_pred HHHHHHHHHHHHCCCcccCc
Confidence 33445888899999999987
No 91
>smart00759 Flu_M1_C Influenza Matrix protein (M1) C-terminal domain. This region is thought to be a second domain of the M1 matrix protein.
Probab=28.58 E-value=1.2e+02 Score=18.14 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHH
Q 033095 14 LAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKG 48 (127)
Q Consensus 14 ~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~ 48 (127)
+.++..|.+..|--.--+.||-.++++.+....++
T Consensus 52 a~~mi~alRsiGahp~s~~Gi~dDllEnLq~~q~~ 86 (95)
T smart00759 52 AQQMIGALRSIGAHPKSGAGIADDLLENLKASQKG 86 (95)
T ss_pred HHHHHHHHHHhcCCCCCccchHHHHHHHHHHHhhh
Confidence 34578889999988877889999998887765543
No 92
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=28.40 E-value=18 Score=16.70 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=14.2
Q ss_pred HHHHhcceeEEecCCCCHHH
Q 033095 19 FACKEWGFFQLVNHGVISAF 38 (127)
Q Consensus 19 ~A~~~~GFf~l~nhGi~~~~ 38 (127)
+||-..|.++..+.|++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~ 21 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDL 21 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCH
Confidence 46677777787777877654
No 93
>PHA00099 minor capsid protein
Probab=28.25 E-value=1.1e+02 Score=19.97 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=32.9
Q ss_pred HHHHHHhcceeEEecCCCC-HHHHHHHHHHHHHHhcCCHHHHhhhccCC
Q 033095 17 LDFACKEWGFFQLVNHGVI-SAFLEKVKKKVKGFFNLSMEEKKKYWQHP 64 (127)
Q Consensus 17 l~~A~~~~GFf~l~nhGi~-~~~~~~~~~~~~~fF~lp~eeK~~~~~~~ 64 (127)
|.++-++.||--.--..++ ++.++-+.++...|.+||...+.++..+|
T Consensus 44 l~h~~rRq~~ygdc~sp~D~qeAl~~V~~~qeaFdsLPA~iR~~F~NdP 92 (147)
T PHA00099 44 LEHVERRQPRYGDCMSPMDYQEALNVVIEAQEAFDSLPAKIRERFGNDP 92 (147)
T ss_pred hhhhhhhCCccccCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhCCCH
Confidence 5666677776433323343 46778888888899999998887776543
No 94
>cd04367 IlGF_insulin_like IlGF_like family, insulin_like subgroup, specific to vertebrates. Members include a number of peptides including insulin and insulin-like growth factors I and II, which play a variety of roles in controlling processes such as metabolism, growth and differentiation, and reproduction. On a cellular level they affect cell cycle, apoptosis, cell migration, and differentiation. With the exception of the insulin-like growth factors, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved to yield two separate chains linked covalently by the two disulfide bonds.
Probab=28.18 E-value=45 Score=19.63 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcceeEEecCCC
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
...+..|...|.+-|||+--..+.
T Consensus 8 s~LvdaL~~VCG~RGF~~~pk~~r 31 (79)
T cd04367 8 SHLVDALYLVCGDRGFFYTPKRRR 31 (79)
T ss_pred HHHHHHHHHHHccCCcccCCcccc
Confidence 467778888999999999765543
No 95
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.90 E-value=17 Score=26.07 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=8.3
Q ss_pred HHHHHHHHHhcceeEE
Q 033095 14 LAKLDFACKEWGFFQL 29 (127)
Q Consensus 14 ~~~l~~A~~~~GFf~l 29 (127)
+.+..+.|++.||=.|
T Consensus 73 ~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 73 FDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 3344456666666443
No 96
>PRK05834 hypothetical protein; Provisional
Probab=27.84 E-value=83 Score=21.62 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcc--eeEEecCCC
Q 033095 14 LAKLDFACKEWG--FFQLVNHGV 34 (127)
Q Consensus 14 ~~~l~~A~~~~G--Ff~l~nhGi 34 (127)
...+.+++.+.. .+.|.|||+
T Consensus 138 a~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 138 DTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred HHHHHHHHhhcCCCEEEEcCCcc
Confidence 345888887754 899999996
No 97
>PF14747 DUF4473: Domain of unknown function (DUF4473)
Probab=27.69 E-value=82 Score=18.42 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcC
Q 033095 32 HGVISAFLEKVKKKVKGFFNL 52 (127)
Q Consensus 32 hGi~~~~~~~~~~~~~~fF~l 52 (127)
-||++..++.+.+...+|...
T Consensus 18 AGmS~~aidgi~~i~~~~~~~ 38 (82)
T PF14747_consen 18 AGMSEKAIDGIVKIAEKFKSQ 38 (82)
T ss_pred cCCCHHHHHHHHHHHHHHHhc
Confidence 489999999999999999753
No 98
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=27.52 E-value=1.9e+02 Score=21.55 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhcceeEEec-CCCCHHHHHHHHHHHHH
Q 033095 10 MDSELAKLDFACKEWGFFQLVN-HGVISAFLEKVKKKVKG 48 (127)
Q Consensus 10 r~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 48 (127)
..+.+.+|.+.+.++-.++|++ +|++...+.++.+..+.
T Consensus 10 K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~ 49 (310)
T PTZ00135 10 KKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRG 49 (310)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhc
Confidence 3467788999999998888777 78999999998888774
No 99
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=26.49 E-value=1.4e+02 Score=18.74 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=23.3
Q ss_pred HHHHHHHh---cceeEEecCCCCHHHHHHHHHHHHHH
Q 033095 16 KLDFACKE---WGFFQLVNHGVISAFLEKVKKKVKGF 49 (127)
Q Consensus 16 ~l~~A~~~---~GFf~l~nhGi~~~~~~~~~~~~~~f 49 (127)
+|..||.. ..-+-|.+.|....+++++....+++
T Consensus 80 eLG~a~Gk~~~~svvaI~d~g~a~~~~~~~~~~i~~~ 116 (117)
T TIGR03677 80 DLGAAAGLEVGAASAAIVDEGKAEELLKEIIEKVEAL 116 (117)
T ss_pred HHHHHhCCCCCeEEEEEEchhhhHHHHHHHHHHHHhc
Confidence 36666653 55677778888888888877766543
No 100
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=26.30 E-value=1.1e+02 Score=20.37 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcceeEEecCCCCHHHHHHHH
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGVISAFLEKVK 43 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~ 43 (127)
+++.++|...++.+|=+.|--|.---+++..+-
T Consensus 23 RAIaakIfaGLR~~Gny~Lp~~aD~NeVLkALc 55 (150)
T PF05687_consen 23 RAIAAKIFAGLRAHGNYKLPKHADNNEVLKALC 55 (150)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHH
Confidence 345557999999999999998865555554443
No 101
>PRK07044 aldolase II superfamily protein; Provisional
Probab=26.27 E-value=75 Score=22.73 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcceeEEecCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGV 34 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi 34 (127)
+....+.++..+..-+.+.|||+
T Consensus 152 e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 152 DEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred HHHHHHHHHhccCCEEEECCCCc
Confidence 44556778888888999999997
No 102
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=25.85 E-value=74 Score=20.52 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHHhcceeEEec
Q 033095 9 SMDSELAKLDFACKEWGFFQLVN 31 (127)
Q Consensus 9 ~r~~~~~~l~~A~~~~GFf~l~n 31 (127)
.|.....+|...|++.|| .|.+
T Consensus 73 ~r~~~y~kI~~~~~~~gf-~v~D 94 (130)
T PF04914_consen 73 MRQEYYKKIKYQLKSQGF-NVAD 94 (130)
T ss_dssp HHHHHHHHHHHHHHTTT---EEE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEe
Confidence 366778889999999999 6664
No 103
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=24.90 E-value=1.5e+02 Score=21.32 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHh--cceeEEecCCCCHHHHHHHHHHHHHHh
Q 033095 11 DSELAKLDFACKE--WGFFQLVNHGVISAFLEKVKKKVKGFF 50 (127)
Q Consensus 11 ~~~~~~l~~A~~~--~GFf~l~nhGi~~~~~~~~~~~~~~fF 50 (127)
.+..++|.++|++ .++++--|-.+--.++.++.+.+.++|
T Consensus 104 ~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l 145 (266)
T TIGR00036 104 EEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYL 145 (266)
T ss_pred HHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhc
Confidence 3567779999999 557777788887888888888887777
No 104
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=24.87 E-value=91 Score=19.93 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcceeEEecCCCC
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGVI 35 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi~ 35 (127)
+.....|.++++.|||-.+.++.-.
T Consensus 35 d~Fg~aL~~~LR~~GYaV~e~~~~~ 59 (121)
T PF07283_consen 35 DPFGQALENALRAKGYAVIEDDPPD 59 (121)
T ss_pred ChHHHHHHHHHHhcCcEEEecCCcc
Confidence 4566779999999999999887654
No 105
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=23.97 E-value=1.9e+02 Score=22.09 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHh-cceeEEecCCCC----HHHHHHHHHHHHHHh
Q 033095 12 SELAKLDFACKE-WGFFQLVNHGVI----SAFLEKVKKKVKGFF 50 (127)
Q Consensus 12 ~~~~~l~~A~~~-~GFf~l~nhGi~----~~~~~~~~~~~~~fF 50 (127)
+.+.++.++..+ .||..=.+|||+ .+.+..+.+..+++-
T Consensus 306 ~~~~~iL~~~~~~~~~IfnlGhGI~P~tp~e~v~~lve~v~~~~ 349 (352)
T COG0407 306 EEVKRILEDGGDGSGYIFNLGHGILPETPPENVKALVEAVHEYS 349 (352)
T ss_pred HHHHHHHHHhccCCCceecCCCCcCCCCCHHHHHHHHHHHHHhc
Confidence 344555555554 599999999985 467778877777653
No 106
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=23.67 E-value=1.7e+02 Score=20.81 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=27.4
Q ss_pred CccCccchHHHHHHHHHHHHhc----ce------eEEecCCCCHHHHHHHHHHHHH
Q 033095 3 SLLYEESMDSELAKLDFACKEW----GF------FQLVNHGVISAFLEKVKKKVKG 48 (127)
Q Consensus 3 ~l~~~~~r~~~~~~l~~A~~~~----GF------f~l~nhGi~~~~~~~~~~~~~~ 48 (127)
+++|||. ...+.++.+.+... |+ -.|..-||+.+.+.++.+..+.
T Consensus 117 R~DSGD~-~~~~~~~r~~f~~~~~~~g~kvl~~~~Ii~Sd~Lde~~i~~l~~~~~~ 171 (245)
T PF04095_consen 117 RPDSGDP-AELSEKLRKIFDEAVGIKGYKVLPSKKIIASDGLDEEKIEELLEQGAE 171 (245)
T ss_dssp EE-SS-H-HHHHHHHHHHHHHTETTTGGEE-TCSEEEEESS-SHHHHHHHHHHHCC
T ss_pred ecCCCCh-HHHHHHHHHHHHHHhCCCCccccceEEEEEeCCCCHHHHHHHHHHhhc
Confidence 3567772 22333444444444 88 7777889999999888887655
No 107
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=23.61 E-value=1.9e+02 Score=23.77 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHH--hcceeEEec-CCCCHHHHHHHHHHHHHHhcC
Q 033095 10 MDSELAKLDFACK--EWGFFQLVN-HGVISAFLEKVKKKVKGFFNL 52 (127)
Q Consensus 10 r~~~~~~l~~A~~--~~GFf~l~n-hGi~~~~~~~~~~~~~~fF~l 52 (127)
|...++++.+-.+ +|||..+.. |-||.....++.......=.|
T Consensus 407 RS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcKL 452 (776)
T KOG1123|consen 407 RSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCKL 452 (776)
T ss_pred ccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhhc
Confidence 5566677777665 899999986 999999999988887766544
No 108
>PF05338 DUF717: Protein of unknown function (DUF717); InterPro: IPR008002 This entry is represented by the Human herpesvirus 8, Orf30 protein; it is a family of uncharacterised viral proteins.
Probab=23.48 E-value=80 Score=17.26 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHH
Q 033095 41 KVKKKVKGFFNLSMEEK 57 (127)
Q Consensus 41 ~~~~~~~~fF~lp~eeK 57 (127)
+=+..+..||+.|..+-
T Consensus 5 ~Df~eC~~FF~rPlp~l 21 (55)
T PF05338_consen 5 NDFEECLKFFSRPLPEL 21 (55)
T ss_pred HHHHHHHHHHcCcHHHH
Confidence 34667889999998764
No 109
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=23.22 E-value=1.1e+02 Score=21.48 Aligned_cols=24 Identities=8% Similarity=-0.075 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhc-------ceeEEecCCCC
Q 033095 12 SELAKLDFACKEW-------GFFQLVNHGVI 35 (127)
Q Consensus 12 ~~~~~l~~A~~~~-------GFf~l~nhGi~ 35 (127)
+....|.+++++. .-+.+.|||+-
T Consensus 143 ~~~~~ia~~l~~~~~~~~~~~avLl~nHG~v 173 (231)
T PRK08193 143 ETGKVIVETFEKRGIDPAAVPGVLVHSHGPF 173 (231)
T ss_pred hHHHHHHHHHhhccCCcccCCEEEEcCCCce
Confidence 3455688887754 47889999973
No 110
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=22.95 E-value=2.8e+02 Score=19.72 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcceeEEe-------cCCCCHHHHHHHHHHHHHHhc
Q 033095 12 SELAKLDFACKEWGFFQLV-------NHGVISAFLEKVKKKVKGFFN 51 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~-------nhGi~~~~~~~~~~~~~~fF~ 51 (127)
..+.++.++|.+.|.=+|+ |-.=|++.++.++....+++.
T Consensus 30 ~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~ 76 (226)
T TIGR00055 30 KSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLD 76 (226)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHH
Confidence 5677899999999987776 555577888999988888775
No 111
>PRK07090 class II aldolase/adducin domain protein; Provisional
Probab=22.92 E-value=99 Score=22.32 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcceeEEecCCCC
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVI 35 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~ 35 (127)
+....+.+++.+.--+.+.|||+=
T Consensus 164 ~~a~~va~~l~~~~avLL~nHGvi 187 (260)
T PRK07090 164 EEGEIISAALGDKRAILLSHHGQL 187 (260)
T ss_pred HHHHHHHHHhccCCEEEECCCCCe
Confidence 344568888888888999999973
No 112
>PF13992 YecR: YecR-like lipoprotein
Probab=22.87 E-value=1e+02 Score=17.87 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=13.6
Q ss_pred HHHHHHhcceeEEecCCCC
Q 033095 17 LDFACKEWGFFQLVNHGVI 35 (127)
Q Consensus 17 l~~A~~~~GFf~l~nhGi~ 35 (127)
-.+.|+.|||---.-.|.|
T Consensus 33 A~~rCq~wGY~~Ae~fG~~ 51 (74)
T PF13992_consen 33 ATKRCQQWGYKGAEPFGGP 51 (74)
T ss_pred HHHHHHHhCcCcCEecCCC
Confidence 4578999999765555544
No 113
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=22.80 E-value=1.6e+02 Score=21.08 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhc
Q 033095 11 DSELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFN 51 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~ 51 (127)
.+.+.+|.++++..|.++..|.++-..++.++.+.+...|.
T Consensus 96 ~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~~aa~~l~ 136 (257)
T PRK00048 96 EEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAEKAAKYLG 136 (257)
T ss_pred HHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHHHHHHhcC
Confidence 34566677777889999999998888877777777776663
No 114
>PRK10425 DNase TatD; Provisional
Probab=22.74 E-value=1.9e+02 Score=20.78 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHH
Q 033095 13 ELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGF 49 (127)
Q Consensus 13 ~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~f 49 (127)
...++.+.|.+.|...++.-|++.+...++.+.++.+
T Consensus 16 d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~ 52 (258)
T PRK10425 16 DRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQY 52 (258)
T ss_pred cHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhC
Confidence 3456777788889888898899988888888888765
No 115
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=22.14 E-value=1.7e+02 Score=22.27 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=23.8
Q ss_pred HHHHHHHHHHH-hcceeEEecCCCCH------HHHHHHHHHHH
Q 033095 12 SELAKLDFACK-EWGFFQLVNHGVIS------AFLEKVKKKVK 47 (127)
Q Consensus 12 ~~~~~l~~A~~-~~GFf~l~nhGi~~------~~~~~~~~~~~ 47 (127)
+.+.++.+.+. +-||..-.+|||+. +.+..+.++++
T Consensus 335 ~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~ 377 (378)
T cd03308 335 DYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVR 377 (378)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCcCCCCCCCChHHHHHHHHHHh
Confidence 45556666655 67888888899854 55666665554
No 116
>PF03278 IpaB_EvcA: IpaB/EvcA family; InterPro: IPR004959 The IpgB family includes the invasion plasmid antigen from Shigella flexneri [], as well as related proteins from Escherichia coli species. Members of this family seem to be involved in pathogenicity of some enterobacteria. However the exact function of these proteins is unclear.; GO: 0009405 pathogenesis; PDB: 3LYQ_A 3LW8_G 3LWN_F 3LXR_F 3GCG_B.
Probab=21.80 E-value=2e+02 Score=19.24 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=26.3
Q ss_pred HHHHH-HHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhh
Q 033095 12 SELAK-LDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKK 59 (127)
Q Consensus 12 ~~~~~-l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~ 59 (127)
+.+.+ |++.|... |-.|+.+.-.++|.....-|.++++++.+
T Consensus 45 r~INk~ID~~c~~n------~~~Is~e~k~~IF~~i~~~~~~~LD~naA 87 (152)
T PF03278_consen 45 RTINKEIDDFCSQN------NSNISKETKQRIFKLIEKKFGIKLDVNAA 87 (152)
T ss_dssp HHHHHHHHHHHHHC------T----HHHHHHHHHHHHHHHT----TT--
T ss_pred HHHHHHHHHHHHHc------CCcCCHHHHHHHHHHHHHHhCCccchhHH
Confidence 34554 88888884 56899999999999999999988887743
No 117
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=21.72 E-value=2.3e+02 Score=20.36 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=17.8
Q ss_pred HHHHHHHhc--ceeEEecCCCCH------HHHHHHHHHHH
Q 033095 16 KLDFACKEW--GFFQLVNHGVIS------AFLEKVKKKVK 47 (127)
Q Consensus 16 ~l~~A~~~~--GFf~l~nhGi~~------~~~~~~~~~~~ 47 (127)
.+.++++.. ||+.-.+||++. +-++.+.++++
T Consensus 266 ~v~~~l~~~~~~~il~~~cgi~~~~~~~~enl~a~v~a~~ 305 (306)
T cd00465 266 KVEELVERLGPHYIINPDCGLGPDSDYKPEHLRAVVQLVD 305 (306)
T ss_pred HHHHHHHHhCCCeEEeCCCCCCCCCCCcHHHHHHHHHHhh
Confidence 344444443 477777787753 55555555443
No 118
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=21.58 E-value=2.6e+02 Score=20.54 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhc
Q 033095 12 SELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFN 51 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~ 51 (127)
+..++|.++.++.|.++--|-.|-..++.++.+.+.++|.
T Consensus 106 e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aak~l~ 145 (266)
T COG0289 106 EQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAAKVLD 145 (266)
T ss_pred HHHHHHHHHHhhCCEEEeccchHHHHHHHHHHHHHHHhcC
Confidence 4456677777777777777777777777777777777765
No 119
>TIGR00760 araD L-ribulose-5-phosphate 4-epimerase. The homolog to this family from Mycobacterium smegmatis is flanked by putative araB and araA genes, consistent with it also being araD.
Probab=21.57 E-value=1.2e+02 Score=21.36 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhc-------ceeEEecCCC
Q 033095 13 ELAKLDFACKEW-------GFFQLVNHGV 34 (127)
Q Consensus 13 ~~~~l~~A~~~~-------GFf~l~nhGi 34 (127)
....|.++..+. -.+.+.|||+
T Consensus 145 ~~~~la~~l~~~~~~~~~~~avlL~nHGv 173 (231)
T TIGR00760 145 TGKVIVETFEKRGIDPAQIPGVLVHSHGP 173 (231)
T ss_pred HHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 344577777765 4688999996
No 120
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=21.52 E-value=43 Score=25.98 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=18.8
Q ss_pred hcceeEEe------cCCCCHHHHHHHHHHHHHHh
Q 033095 23 EWGFFQLV------NHGVISAFLEKVKKKVKGFF 50 (127)
Q Consensus 23 ~~GFf~l~------nhGi~~~~~~~~~~~~~~fF 50 (127)
+-|+-.|. -||||.+++|++.=..-+=|
T Consensus 328 NRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py 361 (450)
T COG1224 328 NRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPY 361 (450)
T ss_pred CCceeeecccCCcCCCCCCHhhhhheeEEecCCC
Confidence 34555554 49999999999865444333
No 121
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=21.38 E-value=1.2e+02 Score=17.22 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcceeEEec
Q 033095 14 LAKLDFACKEWGFFQLVN 31 (127)
Q Consensus 14 ~~~l~~A~~~~GFf~l~n 31 (127)
+.++.++++..||+.+.-
T Consensus 9 ~ke~ik~Le~~Gf~~vrq 26 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQ 26 (66)
T ss_pred HHHHHHHHHhCCcEEEEe
Confidence 345778889999988764
No 122
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.16 E-value=3.3e+02 Score=19.77 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=23.1
Q ss_pred chHHHHHHH---HHHHHhcceeEEecCCCCHHHHHHHHHHH
Q 033095 9 SMDSELAKL---DFACKEWGFFQLVNHGVISAFLEKVKKKV 46 (127)
Q Consensus 9 ~r~~~~~~l---~~A~~~~GFf~l~nhGi~~~~~~~~~~~~ 46 (127)
.+..+..+| .+-++..|....++|.- .+.++.+.++.
T Consensus 188 ~~~~V~kql~~~~~~Ark~G~ai~IGh~~-~~Tv~vl~~~~ 227 (250)
T COG2861 188 TEAAVLKQLDAAEKLARKNGSAIGIGHPH-KNTVAVLQQWL 227 (250)
T ss_pred CHHHHHHHHHHHHHHHHhcCceEEecCCc-hhHHHHHHHHH
Confidence 455554444 45578999999999974 34444444433
No 123
>COG2245 Predicted membrane protein [Function unknown]
Probab=21.15 E-value=42 Score=22.94 Aligned_cols=14 Identities=43% Similarity=0.664 Sum_probs=11.2
Q ss_pred HHHHhcCCHHHHhh
Q 033095 46 VKGFFNLSMEEKKK 59 (127)
Q Consensus 46 ~~~fF~lp~eeK~~ 59 (127)
.-.||.+|+|+|+.
T Consensus 167 iVaffslp~e~~~~ 180 (182)
T COG2245 167 IVAFFSLPPEEKMS 180 (182)
T ss_pred HHHHhcCChhhccc
Confidence 35799999999853
No 124
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=21.08 E-value=1.9e+02 Score=17.03 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcceeEEe-cCCCCHHHHHHHHHHHHHH
Q 033095 11 DSELAKLDFACKEWGFFQLV-NHGVISAFLEKVKKKVKGF 49 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~-nhGi~~~~~~~~~~~~~~f 49 (127)
.+.+.+|.+.+.+.=.++|+ -+|++...+.++....+..
T Consensus 7 ~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~ 46 (100)
T PF00466_consen 7 EEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKK 46 (100)
T ss_dssp HHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 46677899999988555555 5799999888888877665
No 125
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=20.96 E-value=2.7e+02 Score=21.84 Aligned_cols=40 Identities=10% Similarity=0.038 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHhcCC
Q 033095 13 ELAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFFNLS 53 (127)
Q Consensus 13 ~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp 53 (127)
..+++.+..++.|++.|.|+ ||.+.+.+..+...+|.+.-
T Consensus 63 ~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~~n 102 (416)
T PF07350_consen 63 VSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLKAN 102 (416)
T ss_dssp --HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHHhC
Confidence 44668889999999999987 99998888888888887543
No 126
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=20.87 E-value=2e+02 Score=20.82 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcceeEEecCCCCHHHHHHHHHHHHHHh
Q 033095 14 LAKLDFACKEWGFFQLVNHGVISAFLEKVKKKVKGFF 50 (127)
Q Consensus 14 ~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF 50 (127)
..+|.+.|++-|-.+++.-|++.+....+.+.++.|-
T Consensus 19 ~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~ 55 (256)
T COG0084 19 RDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYP 55 (256)
T ss_pred HHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCC
Confidence 3447778888899999999999999988988888875
No 127
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=20.81 E-value=1.9e+02 Score=21.26 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHHH--HHHhcceeEEecCCCC----HHHHHHHHHHHHHH
Q 033095 12 SELAKLDF--ACKEWGFFQLVNHGVI----SAFLEKVKKKVKGF 49 (127)
Q Consensus 12 ~~~~~l~~--A~~~~GFf~l~nhGi~----~~~~~~~~~~~~~f 49 (127)
+.+.++.+ .+..-||+.=.+|+|| .+-+..+.++++++
T Consensus 300 ~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 300 EEVKRLIEEGLAGGGGFILSPGCGIPPDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp HHHHHHHHHTHCTSSSEEBEBSS---TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEeCCCcCCCCcCHHHHHHHHHHHHhC
Confidence 44555444 4557888888888764 57788888888765
No 128
>PRK00766 hypothetical protein; Provisional
Probab=20.78 E-value=1.1e+02 Score=21.32 Aligned_cols=38 Identities=5% Similarity=-0.061 Sum_probs=29.6
Q ss_pred ceeEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcc
Q 033095 25 GFFQLVNHGVISAFLEKVKKKVKGFFNLSMEEKKKYWQ 62 (127)
Q Consensus 25 GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~eeK~~~~~ 62 (127)
+=+||.-|||+.+...++......-..+|+..+.....
T Consensus 145 ~~vyvs~~gi~l~~A~~lv~~~~~~~riPEPlR~Ahli 182 (194)
T PRK00766 145 GPLYIQAAGIDPETAAEIVRLTSTRSLIPEPLRLAHLI 182 (194)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhccCCCCchhhHHHHHH
Confidence 43566669999998888888777788899998877543
No 129
>cd04368 IlGF IlGF, insulin_like growth factors; specific to vertebrates. Members include a number of peptides including insulin-like growth factors I and II, which play a variety of roles in controlling processes such as growth, differentiation, and reproduction. On a cellular level they affect cell cycle, apoptosis, cell migration, proliferation, and differentiation. Typically, the active forms of these peptide hormones are single chains cross-linked by three disulfide bonds.
Probab=20.73 E-value=80 Score=18.00 Aligned_cols=21 Identities=24% Similarity=0.541 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcceeEEec
Q 033095 11 DSELAKLDFACKEWGFFQLVN 31 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~n 31 (127)
...+..|...|.+-||++...
T Consensus 8 ~~Lvd~L~~vCg~RGf~~~~~ 28 (67)
T cd04368 8 GELVDTLQFVCGDRGFYFSKP 28 (67)
T ss_pred HHHHHHHHHHhCCCCcccCCC
Confidence 356777889999999987663
No 130
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.30 E-value=2.2e+02 Score=17.60 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHhh
Q 033095 34 VISAFLEKVKKKVKGFFNLSMEEKKK 59 (127)
Q Consensus 34 i~~~~~~~~~~~~~~fF~lp~eeK~~ 59 (127)
++++--+.+...-..|-.||.++|..
T Consensus 59 LspeqR~~~R~~~~~~~~Lpp~qR~~ 84 (107)
T PF11304_consen 59 LSPEQRQQARENYQRFKQLPPEQRQA 84 (107)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555666666666666666653
No 131
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=20.23 E-value=1.1e+02 Score=18.27 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcceeEEecC
Q 033095 11 DSELAKLDFACKEWGFFQLVNH 32 (127)
Q Consensus 11 ~~~~~~l~~A~~~~GFf~l~nh 32 (127)
++.+..|.+...+-||+||.-.
T Consensus 60 d~~~g~LY~~~~~dGfLyi~Ys 81 (87)
T cd01612 60 DENVGNLYRCFGTNGELIVSYC 81 (87)
T ss_pred hhHHHHHHHhcCCCCEEEEEEe
Confidence 4788889999988999998743
No 132
>KOG4402 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.22 E-value=68 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=13.1
Q ss_pred CCCCCCCCcchHHHHHH
Q 033095 100 PHLFPKLPPSLRFSLFV 116 (127)
Q Consensus 100 ~~~wP~~~~~fr~~~~~ 116 (127)
|.+||...|+|.+.+..
T Consensus 52 p~~wPek~pg~~Ef~~s 68 (144)
T KOG4402|consen 52 PEPWPEKCPGFEEFFQS 68 (144)
T ss_pred CccchhhCcCHHHHHhh
Confidence 67899988888776644
No 133
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=20.14 E-value=80 Score=12.20 Aligned_cols=12 Identities=0% Similarity=-0.294 Sum_probs=6.8
Q ss_pred HHHHHHHHhhhh
Q 033095 115 FVLDMDLQAKSE 126 (127)
Q Consensus 115 ~~y~~~~~~la~ 126 (127)
++|.+-+.+|++
T Consensus 3 ee~~km~~~lar 14 (15)
T PF10550_consen 3 EEVAKMAAELAR 14 (15)
T ss_dssp HHHHHHHHHH-H
T ss_pred HHHHHHHHHHhc
Confidence 456666666664
No 134
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=20.14 E-value=74 Score=19.54 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=9.5
Q ss_pred cCCCCHHHHHHHHHHHH
Q 033095 31 NHGVISAFLEKVKKKVK 47 (127)
Q Consensus 31 nhGi~~~~~~~~~~~~~ 47 (127)
++||.+.|+..+...++
T Consensus 53 GqGia~~L~~~al~~ar 69 (99)
T COG2388 53 GQGIAQKLVEKALEEAR 69 (99)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 45566666666555444
No 135
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=20.02 E-value=2.7e+02 Score=19.55 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcceeEEe-------cCCCCHHHHHHHHHHHHHHhc
Q 033095 12 SELAKLDFACKEWGFFQLV-------NHGVISAFLEKVKKKVKGFFN 51 (127)
Q Consensus 12 ~~~~~l~~A~~~~GFf~l~-------nhGi~~~~~~~~~~~~~~fF~ 51 (127)
+.+.+|.+.|.+.|.=+|+ |-.=|++.++.+++....++.
T Consensus 25 ~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~ 71 (223)
T PF01255_consen 25 EKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLR 71 (223)
T ss_dssp HHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHH
Confidence 4566799999999986666 556678889899888887765
Done!