Query 033096
Match_columns 127
No_of_seqs 113 out of 140
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:58:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qxf_A GR2, 30S ribosomal prot 94.8 0.02 7E-07 38.7 3.0 39 59-98 7-45 (66)
2 3j20_W 30S ribosomal protein S 94.5 0.024 8.2E-07 38.0 2.7 39 59-98 15-53 (63)
3 2xzm_6 RPS27E; ribosome, trans 94.0 0.042 1.4E-06 38.4 3.3 40 59-99 32-71 (81)
4 3u5c_b RP61, YS20, 40S ribosom 93.3 0.037 1.3E-06 38.8 2.0 41 59-100 34-74 (82)
5 3iz6_X 40S ribosomal protein S 92.1 0.049 1.7E-06 38.4 1.3 40 59-99 36-75 (86)
6 1gh9_A 8.3 kDa protein (gene M 86.3 0.79 2.7E-05 30.7 3.7 34 77-112 2-35 (71)
7 2yrc_A Protein transport prote 85.1 0.54 1.8E-05 30.3 2.4 39 35-73 3-47 (59)
8 2ppt_A Thioredoxin-2; thiredox 79.1 0.71 2.4E-05 32.1 1.3 32 59-90 14-45 (155)
9 1m2o_A SEC23, protein transpor 77.1 0.95 3.2E-05 40.6 1.9 60 14-73 6-91 (768)
10 1bor_A Transcription factor PM 76.7 1.2 4.3E-05 26.6 1.8 30 78-114 25-54 (56)
11 3p2a_A Thioredoxin 2, putative 75.1 1.1 3.8E-05 30.0 1.4 32 59-90 5-36 (148)
12 2yrc_A Protein transport prote 72.9 2.8 9.7E-05 26.9 2.8 39 74-112 4-48 (59)
13 1pft_A TFIIB, PFTFIIBN; N-term 71.6 2.6 8.9E-05 25.2 2.3 28 79-106 5-33 (50)
14 2ct7_A Ring finger protein 31; 67.9 3.9 0.00013 27.0 2.8 24 82-105 28-51 (86)
15 2ct7_A Ring finger protein 31; 64.3 7.7 0.00026 25.5 3.7 29 41-69 24-53 (86)
16 1pft_A TFIIB, PFTFIIBN; N-term 63.3 5.4 0.00019 23.7 2.5 30 40-69 4-34 (50)
17 1wii_A Hypothetical UPF0222 pr 63.2 8.4 0.00029 26.5 3.8 39 58-96 22-64 (85)
18 2nut_A Protein transport prote 62.8 5.6 0.00019 35.8 3.6 59 15-73 16-100 (769)
19 2jrp_A Putative cytoplasmic pr 57.2 17 0.00059 24.9 4.5 58 42-108 3-62 (81)
20 3na7_A HP0958; flagellar bioge 56.4 3.8 0.00013 31.7 1.2 17 79-95 222-238 (256)
21 3j20_Y 30S ribosomal protein S 55.0 8.3 0.00029 23.8 2.4 28 79-106 19-46 (50)
22 3p8b_A DNA-directed RNA polyme 53.9 6.7 0.00023 27.1 2.0 34 33-72 15-48 (81)
23 3efo_B SEC24 related gene fami 53.8 5.4 0.00018 36.0 1.9 36 38-73 95-134 (770)
24 1pcx_A Protein transport prote 51.4 10 0.00035 34.4 3.3 33 41-73 112-148 (810)
25 1vq8_Z 50S ribosomal protein L 49.5 8.7 0.0003 26.1 2.0 31 76-106 24-54 (83)
26 3eh2_A Protein transport prote 49.3 6.2 0.00021 35.6 1.6 35 39-73 92-130 (766)
27 1zbd_B Rabphilin-3A; G protein 47.7 6.5 0.00022 28.5 1.2 54 40-106 54-107 (134)
28 3j20_W 30S ribosomal protein S 46.6 25 0.00085 23.2 3.8 39 35-73 9-48 (63)
29 2hf1_A Tetraacyldisaccharide-1 46.3 16 0.00054 23.9 2.8 31 80-110 9-39 (68)
30 1m2v_B SEC24, protein transpor 45.5 14 0.00049 34.3 3.4 33 41-73 228-264 (926)
31 2jr6_A UPF0434 protein NMA0874 45.2 17 0.00057 23.8 2.8 29 81-109 10-38 (68)
32 2js4_A UPF0434 protein BB2007; 45.1 18 0.00062 23.7 3.0 29 81-109 10-38 (70)
33 2e2z_A TIM15; protein import, 45.0 7.1 0.00024 28.0 1.0 37 34-70 6-49 (100)
34 2csz_A Synaptotagmin-like prot 45.0 5.4 0.00019 27.2 0.4 53 37-106 21-73 (76)
35 2pk7_A Uncharacterized protein 44.4 15 0.00051 24.1 2.4 14 42-55 9-22 (69)
36 2k1p_A Zinc finger RAN-binding 43.0 11 0.00036 21.4 1.4 25 58-88 5-29 (33)
37 2xzm_6 RPS27E; ribosome, trans 42.1 26 0.00089 24.2 3.5 39 35-73 26-65 (81)
38 3h0g_L DNA-directed RNA polyme 41.8 9.4 0.00032 25.1 1.2 27 78-105 20-46 (63)
39 2lk0_A RNA-binding protein 5; 41.2 14 0.00048 20.7 1.7 25 58-88 4-28 (32)
40 1pcx_A Protein transport prote 40.8 18 0.00061 32.8 3.2 32 80-111 113-148 (810)
41 3eh1_A Protein transport prote 40.5 22 0.00076 32.0 3.7 32 41-73 85-120 (751)
42 1twf_I B12.6, DNA-directed RNA 40.3 14 0.00049 26.0 2.0 31 80-110 5-39 (122)
43 1rfh_A RAS association (ralgds 40.1 21 0.00072 22.0 2.6 25 79-107 22-46 (59)
44 1faq_A RAF-1; transferase, ser 40.1 22 0.00074 20.8 2.5 24 79-107 14-37 (52)
45 1qxf_A GR2, 30S ribosomal prot 39.4 17 0.00057 24.4 2.1 35 77-111 5-40 (66)
46 2k2d_A Ring finger and CHY zin 37.0 27 0.00093 23.3 2.9 36 36-71 32-67 (79)
47 1m2v_B SEC24, protein transpor 37.0 22 0.00074 33.1 3.2 33 79-111 228-264 (926)
48 2jne_A Hypothetical protein YF 36.6 50 0.0017 23.7 4.4 64 34-107 26-91 (101)
49 3efo_B SEC24 related gene fami 36.6 17 0.00059 32.7 2.4 35 78-112 97-135 (770)
50 3eh2_A Protein transport prote 36.3 20 0.00067 32.4 2.7 35 78-112 93-131 (766)
51 2jny_A Uncharacterized BCR; st 35.3 30 0.001 22.6 2.8 15 41-55 10-24 (67)
52 3m7n_A Putative uncharacterize 34.8 21 0.00073 26.3 2.3 39 67-107 126-166 (179)
53 3h0g_I DNA-directed RNA polyme 32.4 35 0.0012 23.6 3.0 30 81-110 6-39 (113)
54 3u5c_b RP61, YS20, 40S ribosom 32.4 41 0.0014 23.2 3.3 40 35-74 28-68 (82)
55 1gh9_A 8.3 kDa protein (gene M 32.4 31 0.0011 22.8 2.6 30 40-71 3-32 (71)
56 2k4x_A 30S ribosomal protein S 31.9 27 0.00091 21.9 2.1 26 81-106 20-45 (55)
57 1x0t_A Ribonuclease P protein 31.1 53 0.0018 23.1 3.8 49 38-95 62-110 (120)
58 3eh1_A Protein transport prote 30.3 30 0.001 31.2 2.9 32 80-112 86-121 (751)
59 2fnf_X Putative RAS effector N 29.8 28 0.00097 22.4 2.0 23 80-106 36-58 (72)
60 2pk7_A Uncharacterized protein 28.4 28 0.00097 22.7 1.8 29 82-110 11-39 (69)
61 2hf1_A Tetraacyldisaccharide-1 28.1 30 0.001 22.5 1.9 33 39-71 6-38 (68)
62 2jr6_A UPF0434 protein NMA0874 27.8 31 0.0011 22.4 1.9 33 39-71 6-38 (68)
63 1twf_L ABC10-alpha, DNA-direct 26.7 36 0.0012 22.3 2.1 24 81-105 30-53 (70)
64 2js4_A UPF0434 protein BB2007; 26.4 36 0.0012 22.3 2.0 33 39-71 6-38 (70)
65 1ptq_A Protein kinase C delta 26.3 40 0.0014 19.3 2.1 26 80-106 12-37 (50)
66 2avu_E Flagellar transcription 25.9 55 0.0019 25.4 3.3 34 75-108 130-165 (192)
67 2k2d_A Ring finger and CHY zin 25.8 70 0.0024 21.2 3.4 34 75-108 33-66 (79)
68 2v8f_C MDIA1, profilin IIA; al 25.6 43 0.0015 18.8 1.9 18 20-37 6-23 (26)
69 3qt1_I DNA-directed RNA polyme 25.0 31 0.0011 25.0 1.7 37 74-110 18-59 (133)
70 3iz6_X 40S ribosomal protein S 24.3 24 0.00081 24.7 0.9 36 75-110 32-68 (86)
71 2apo_B Ribosome biogenesis pro 23.8 38 0.0013 21.9 1.8 25 80-110 7-31 (60)
72 2jmo_A Parkin; IBR, E3 ligase, 23.4 33 0.0011 22.2 1.4 23 79-101 25-49 (80)
73 1vk6_A NADH pyrophosphatase; 1 22.3 46 0.0016 25.9 2.3 30 79-108 107-136 (269)
74 2k3r_A Ribonuclease P protein 22.3 1.1E+02 0.0036 21.7 4.0 49 38-95 57-105 (123)
75 2dkt_A Ring finger and CHY zin 21.8 1.4E+02 0.0047 22.2 4.7 56 38-110 55-110 (143)
76 4b6d_A RAC GTPase-activating p 21.6 50 0.0017 20.7 1.9 29 79-109 19-47 (61)
77 1tot_A CREB-binding protein; z 21.4 47 0.0016 20.3 1.7 24 78-106 5-28 (52)
78 1k81_A EIF-2-beta, probable tr 21.0 45 0.0015 19.1 1.5 18 93-110 17-34 (36)
79 1dxg_A Desulforedoxin; non-hem 20.5 74 0.0025 17.9 2.4 25 96-120 5-30 (36)
No 1
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=94.79 E-value=0.02 Score=38.68 Aligned_cols=39 Identities=28% Similarity=0.601 Sum_probs=33.0
Q ss_pred eEEcCCCCCcccccCccceeeEEcCCCCeeeeeeCCCCeE
Q 033096 59 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSV 98 (127)
Q Consensus 59 sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP~GA~SV 98 (127)
.|+|+.|..++.+.. +....+.|..|++.|.-|.|-.+.
T Consensus 7 ~VKCp~C~niq~VFS-hA~tvV~C~~Cg~~L~~PTGGKA~ 45 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFD-HPSTIVKCIICGRTVAEPTGGKGN 45 (66)
T ss_dssp EEECTTTCCEEEEES-SCSSCEECSSSCCEEEECCSSSCE
T ss_pred EEECCCCCCceEEEe-cCceEEEcccCCCEEeecCCccee
Confidence 599999999998874 445688999999999999997653
No 2
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.48 E-value=0.024 Score=37.98 Aligned_cols=39 Identities=31% Similarity=0.687 Sum_probs=32.3
Q ss_pred eEEcCCCCCcccccCccceeeEEcCCCCeeeeeeCCCCeE
Q 033096 59 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSV 98 (127)
Q Consensus 59 sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP~GA~SV 98 (127)
.|+|+.|..++.+.+ +....+.|..|++.|.-|.|-..-
T Consensus 15 ~VkCp~C~~~q~VFS-ha~t~V~C~~Cgt~L~~PTGGKa~ 53 (63)
T 3j20_W 15 RVKCIDCGNEQIVFS-HPATKVRCLICGATLVEPTGGKGI 53 (63)
T ss_dssp EEECSSSCCEEEEES-SCSSCEECSSSCCEEEECCSSSCE
T ss_pred EEECCCCCCeeEEEe-cCCeEEEccCcCCEEecCCCCcEE
Confidence 589999999998874 446688999999999999987643
No 3
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=94.02 E-value=0.042 Score=38.41 Aligned_cols=40 Identities=25% Similarity=0.658 Sum_probs=32.6
Q ss_pred eEEcCCCCCcccccCccceeeEEcCCCCeeeeeeCCCCeEe
Q 033096 59 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSVR 99 (127)
Q Consensus 59 sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP~GA~SVr 99 (127)
.|+|+.|..++.+.. +....+.|..|++.|..|.|..+.-
T Consensus 32 ~VkCp~C~n~q~VFS-hA~t~V~C~~Cg~~L~~PTGGKA~l 71 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFS-NAQSTIICEKCSAILCKPTGGKVQI 71 (81)
T ss_dssp EEECSSSCCEEEEET-TCSSCEECSSSCCEEEEECSSCEEE
T ss_pred EeECCCCCCeeEEEe-cCccEEEccCCCCEEeecCCCCeEe
Confidence 589999999998874 4456788999999999999876543
No 4
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=93.30 E-value=0.037 Score=38.78 Aligned_cols=41 Identities=32% Similarity=0.656 Sum_probs=33.2
Q ss_pred eEEcCCCCCcccccCccceeeEEcCCCCeeeeeeCCCCeEeC
Q 033096 59 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSVRC 100 (127)
Q Consensus 59 sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP~GA~SVrC 100 (127)
.|+|+.|..++.|.. +....+.|.+|++.|.-|.|-..--=
T Consensus 34 ~VkCp~C~~~q~VFS-ha~t~V~C~~Cg~~L~~PTGGKa~l~ 74 (82)
T 3u5c_b 34 DVKCPGCLNITTVFS-HAQTAVTCESCSTILCTPTGGKAKLS 74 (82)
T ss_dssp EEECTTSCSCEEEES-BCSSCCCCSSSCCCCEECCSSBCEEC
T ss_pred EEECCCCCCeeEEEe-cCCeEEEccccCCEEeccCCCCeEec
Confidence 589999999998874 44567889999999999998765443
No 5
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.11 E-value=0.049 Score=38.44 Aligned_cols=40 Identities=30% Similarity=0.606 Sum_probs=32.6
Q ss_pred eEEcCCCCCcccccCccceeeEEcCCCCeeeeeeCCCCeEe
Q 033096 59 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSVR 99 (127)
Q Consensus 59 sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP~GA~SVr 99 (127)
.|+|+.|..++.+.. +....+.|.+|++.|.-|.|-.+--
T Consensus 36 ~VkCp~C~~~~~VFS-hA~t~V~C~~CgtvL~~PTGGKa~l 75 (86)
T 3iz6_X 36 DVKCQGCFNITTVFS-HSQTVVVCPGCQTVLCQPTGGKARL 75 (86)
T ss_dssp EEECTTTCCEEEEET-TCSSCCCCSSSCCCCSCCCSSSCCC
T ss_pred EEECCCCCCeeEEEe-cCCcEEEccCCCCEeecCCCCCEEe
Confidence 499999999998874 4456788999999999999876543
No 6
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=86.26 E-value=0.79 Score=30.70 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=29.1
Q ss_pred eeeEEcCCCCeeeeeeCCCCeEeCCCCCCceeeccC
Q 033096 77 VGQVKCASCAVLLMYPYGAPSVRCSSCCFVTEIGVC 112 (127)
Q Consensus 77 ~a~v~Cg~Crt~L~yP~GA~SVrCa~C~tVT~V~~~ 112 (127)
+.-+.|. |+..+..-.|+.+.+|+ |++..+|...
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~ 35 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDR 35 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEECCSS
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeeeceE
Confidence 3567899 99999999999999998 9998888644
No 7
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=85.14 E-value=0.54 Score=30.31 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=29.4
Q ss_pred Cccccceeeecc--cccee----eecCCCCeEEcCCCCCcccccC
Q 033096 35 SPSEMAQMVCGS--CRRLL----AYPRGARHVKCSCCQTVNFVLE 73 (127)
Q Consensus 35 ~~~~~sQLvCgg--Cr~lL----~YprGA~sVrCs~C~tVn~v~~ 73 (127)
.|.+..-+.|.. ||..| .+..|+...+|..|...|.+++
T Consensus 3 ~~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 3 SGSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp CSSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCS
T ss_pred ccCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCH
Confidence 355666778887 88876 4666778888888888888774
No 8
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=79.07 E-value=0.71 Score=32.08 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=24.6
Q ss_pred eEEcCCCCCcccccCccceeeEEcCCCCeeee
Q 033096 59 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLM 90 (127)
Q Consensus 59 sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~ 90 (127)
++.|+.|.++|.++.......-.||.|+..|.
T Consensus 14 ~~~c~~c~~~~~~~~~r~~~~~~~~~~~~~~~ 45 (155)
T 2ppt_A 14 RLTCLACGQANKVPSDRLAAGPKCGICGAGLI 45 (155)
T ss_dssp EEECTTTCCEEEEEGGGTTSCCBCTTTCCBSC
T ss_pred eEECccccccccCCcccccCCCCCCcCCcccc
Confidence 58899999999888654455667888888774
No 9
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=77.08 E-value=0.95 Score=40.64 Aligned_cols=60 Identities=20% Similarity=0.472 Sum_probs=41.9
Q ss_pred hhhhcCCCCCCCCCCC-----------------CC---CCCCccccceeeecc--ccceee----ecCCCCeEEcCCCCC
Q 033096 14 ENEEAGPPPGWQPIPP-----------------PL---PVPSPSEMAQMVCGS--CRRLLA----YPRGARHVKCSCCQT 67 (127)
Q Consensus 14 ~~~~~~~~~gw~~~~~-----------------~~---~~p~~~~~sQLvCgg--Cr~lL~----YprGA~sVrCs~C~t 67 (127)
-++.++.|.-|..+|- |. +.+|-.+..-+.|.. ||..|- +..|...++|..|+.
T Consensus 6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~ 85 (768)
T 1m2o_A 6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNS 85 (768)
T ss_dssp HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCTTCCEECSCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTCC
T ss_pred ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCCCCCcCCCCCCccCCCCCCeEECCceEEeCCCCEEEcccCCC
Confidence 4455788888877664 11 122333456688988 998763 567888999999999
Q ss_pred cccccC
Q 033096 68 VNFVLE 73 (127)
Q Consensus 68 Vn~v~~ 73 (127)
.|.+|+
T Consensus 86 ~N~~P~ 91 (768)
T 1m2o_A 86 RNHLPP 91 (768)
T ss_dssp CCBCCG
T ss_pred CCCCCh
Confidence 998885
No 10
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.66 E-value=1.2 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=20.7
Q ss_pred eeEEcCCCCeeeeeeCCCCeEeCCCCCCceeeccCCc
Q 033096 78 GQVKCASCAVLLMYPYGAPSVRCSSCCFVTEIGVCGL 114 (127)
Q Consensus 78 a~v~Cg~Crt~L~yP~GA~SVrCa~C~tVT~V~~~~~ 114 (127)
+|..|..|-.. ...+|+.|+....++..++
T Consensus 25 gH~fC~~Ci~~-------~~~~CP~Cr~~~~~~~~~~ 54 (56)
T 1bor_A 25 LHTLCSGCLEA-------SGMQCPICQAPWPLGADTP 54 (56)
T ss_dssp SCCSBTTTCSS-------SSSSCSSCCSSSSCCSSCC
T ss_pred CCcccHHHHcc-------CCCCCCcCCcEeecCCcCc
Confidence 45566677554 3678999988887776654
No 11
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=75.10 E-value=1.1 Score=29.98 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=25.0
Q ss_pred eEEcCCCCCcccccCccceeeEEcCCCCeeee
Q 033096 59 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLM 90 (127)
Q Consensus 59 sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~ 90 (127)
.+.|+.|.+.|.+++........|+.|+..|.
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~ 36 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHSLF 36 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCBTT
T ss_pred EEECcccccccCCCCcccccCCcchhcCCccc
Confidence 57799999999888766666777888888764
No 12
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=72.90 E-value=2.8 Score=26.86 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=27.7
Q ss_pred ccceeeEEcCC--CCeee----eeeCCCCeEeCCCCCCceeeccC
Q 033096 74 AHQVGQVKCAS--CAVLL----MYPYGAPSVRCSSCCFVTEIGVC 112 (127)
Q Consensus 74 ~~e~a~v~Cg~--Crt~L----~yP~GA~SVrCa~C~tVT~V~~~ 112 (127)
+.+..-++|.+ ||+.| .+-.+...-+|..|...|.++..
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~ 48 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPS 48 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSC
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHH
Confidence 34455566766 77655 34467789999999999998854
No 13
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=71.61 E-value=2.6 Score=25.16 Aligned_cols=28 Identities=29% Similarity=0.707 Sum_probs=18.2
Q ss_pred eEEcCCCCe-eeeeeCCCCeEeCCCCCCc
Q 033096 79 QVKCASCAV-LLMYPYGAPSVRCSSCCFV 106 (127)
Q Consensus 79 ~v~Cg~Crt-~L~yP~GA~SVrCa~C~tV 106 (127)
.+.|..|+. .|.|-+.+.-..|..|+.|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCc
Confidence 345666666 6666666666777777664
No 14
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=67.88 E-value=3.9 Score=26.97 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=11.2
Q ss_pred cCCCCeeeeeeCCCCeEeCCCCCC
Q 033096 82 CASCAVLLMYPYGAPSVRCSSCCF 105 (127)
Q Consensus 82 Cg~Crt~L~yP~GA~SVrCa~C~t 105 (127)
|.+|...++...+..-|.|+.|++
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~ 51 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQ 51 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCC
T ss_pred CcCCCchheecCCCCceEeCCCCC
Confidence 444444444444444455554543
No 15
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=64.34 E-value=7.7 Score=25.49 Aligned_cols=29 Identities=21% Similarity=0.581 Sum_probs=20.9
Q ss_pred eee-eccccceeeecCCCCeEEcCCCCCcc
Q 033096 41 QMV-CGSCRRLLAYPRGARHVKCSCCQTVN 69 (127)
Q Consensus 41 QLv-CggCr~lL~YprGA~sVrCs~C~tVn 69 (127)
.++ |-+|-.++....+...|.|+.|+...
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEE
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCcc
Confidence 343 88888888777777778888776543
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=63.27 E-value=5.4 Score=23.70 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=21.1
Q ss_pred ceeeeccccc-eeeecCCCCeEEcCCCCCcc
Q 033096 40 AQMVCGSCRR-LLAYPRGARHVKCSCCQTVN 69 (127)
Q Consensus 40 sQLvCggCr~-lL~YprGA~sVrCs~C~tVn 69 (127)
..++|..|.. -|.|...+....|..|..|-
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 4567777776 77777777777777776653
No 17
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=63.21 E-value=8.4 Score=26.45 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=29.6
Q ss_pred CeEEcCCCCCcccccC----ccceeeEEcCCCCeeeeeeCCCC
Q 033096 58 RHVKCSCCQTVNFVLE----AHQVGQVKCASCAVLLMYPYGAP 96 (127)
Q Consensus 58 ~sVrCs~C~tVn~v~~----~~e~a~v~Cg~Crt~L~yP~GA~ 96 (127)
+.-.|+.|+..++|-- ....+.+.|+.|+....++.++.
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L 64 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYL 64 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSS
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCcc
Confidence 3457999999887641 35589999999999888776654
No 18
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=62.77 E-value=5.6 Score=35.76 Aligned_cols=59 Identities=27% Similarity=0.541 Sum_probs=41.4
Q ss_pred hhhcCCCCCCCCCCC-----------------CC---CCCCccccceeeecc--cccee----eecCCCCeEEcCCCCCc
Q 033096 15 NEEAGPPPGWQPIPP-----------------PL---PVPSPSEMAQMVCGS--CRRLL----AYPRGARHVKCSCCQTV 68 (127)
Q Consensus 15 ~~~~~~~~gw~~~~~-----------------~~---~~p~~~~~sQLvCgg--Cr~lL----~YprGA~sVrCs~C~tV 68 (127)
+..++.+.-|..+|- |. +.+|-.+.+-+.|.. ||..| .+..|...++|..|+..
T Consensus 16 ~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~ 95 (769)
T 2nut_A 16 EERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 95 (769)
T ss_dssp HHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEETTTTEEECSSSCCE
T ss_pred CCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCCCCCcCCCCCCcCCCCCCCeEECCceEEeCCCCEEEccCCCCC
Confidence 345788888988775 11 112334456788988 98866 35578888999999999
Q ss_pred ccccC
Q 033096 69 NFVLE 73 (127)
Q Consensus 69 n~v~~ 73 (127)
|.+|+
T Consensus 96 N~~P~ 100 (769)
T 2nut_A 96 NQFPP 100 (769)
T ss_dssp EECCG
T ss_pred CCCCh
Confidence 98874
No 19
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=57.22 E-value=17 Score=24.90 Aligned_cols=58 Identities=24% Similarity=0.514 Sum_probs=44.0
Q ss_pred eeeccccceeeecCCCCeEEcCCCCCcccccCccceeeEEcCCCCeeee--eeCCCCeEeCCCCCCcee
Q 033096 42 MVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLM--YPYGAPSVRCSSCCFVTE 108 (127)
Q Consensus 42 LvCggCr~lL~YprGA~sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~--yP~GA~SVrCa~C~tVT~ 108 (127)
+.|-.|+..|.-. +..-.|..|+. ++.+ .-.|..|+..|- -.=||.+.-|..|+...+
T Consensus 3 ~~CP~C~~~l~~~--~~~~~C~~C~~-~~~~------~afCPeCgq~Le~lkACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 3 ITCPVCHHALERN--GDTAHCETCAK-DFSL------QALCPDCRQPLQVLKACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp CCCSSSCSCCEEC--SSEEECTTTCC-EEEE------EEECSSSCSCCCEEEETTEEEECCTTTTCCCC
T ss_pred CCCCCCCCccccC--CCceECccccc-cCCC------cccCcchhhHHHHHHhcCCcCeeeccCCCEee
Confidence 7899999998853 44778999987 3322 337999999994 456888999999997643
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.37 E-value=3.8 Score=31.68 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=11.0
Q ss_pred eEEcCCCCeeeeeeCCC
Q 033096 79 QVKCASCAVLLMYPYGA 95 (127)
Q Consensus 79 ~v~Cg~Crt~L~yP~GA 95 (127)
-+.|.+|+..|.+....
T Consensus 222 Iv~Cp~CgRIL~~~~~~ 238 (256)
T 3na7_A 222 MITCPYCGRILYAEGAY 238 (256)
T ss_dssp CEECTTTCCEEECSCC-
T ss_pred EEECCCCCeeEEeCcch
Confidence 36677777777776543
No 21
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.01 E-value=8.3 Score=23.80 Aligned_cols=28 Identities=14% Similarity=0.422 Sum_probs=20.2
Q ss_pred eEEcCCCCeeeeeeCCCCeEeCCCCCCc
Q 033096 79 QVKCASCAVLLMYPYGAPSVRCSSCCFV 106 (127)
Q Consensus 79 ~v~Cg~Crt~L~yP~GA~SVrCa~C~tV 106 (127)
.-.|..|+..++.........|+.|+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCE
Confidence 3458888876666666678888888764
No 22
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=53.95 E-value=6.7 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.612 Sum_probs=21.7
Q ss_pred CCCccccceeeeccccceeeecCCCCeEEcCCCCCccccc
Q 033096 33 VPSPSEMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVL 72 (127)
Q Consensus 33 ~p~~~~~sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v~ 72 (127)
.|-|+.|....|..|+.++.+. .|+.|..-+...
T Consensus 15 ~~~~~~m~~rAC~~C~~v~~~d------~CPnCgs~~~T~ 48 (81)
T 3p8b_A 15 VPRGSHMSEKACRHCHYITSED------RCPVCGSRDLSE 48 (81)
T ss_dssp -------CCEEETTTCBEESSS------SCTTTCCCCEES
T ss_pred ccCCcchhHHHHhhCCCccCCC------CCCCCCCCccCC
Confidence 4667788889999999998775 599998766443
No 23
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=53.81 E-value=5.4 Score=36.01 Aligned_cols=36 Identities=28% Similarity=0.665 Sum_probs=29.9
Q ss_pred ccceeeecccccee----eecCCCCeEEcCCCCCcccccC
Q 033096 38 EMAQMVCGSCRRLL----AYPRGARHVKCSCCQTVNFVLE 73 (127)
Q Consensus 38 ~~sQLvCggCr~lL----~YprGA~sVrCs~C~tVn~v~~ 73 (127)
+.+=+.|..||..| .+..|...++|..|...|.+|+
T Consensus 95 ~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~ 134 (770)
T 3efo_B 95 ESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPP 134 (770)
T ss_dssp TTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCG
T ss_pred CCCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCch
Confidence 34558999999976 5677889999999999999885
No 24
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=51.44 E-value=10 Score=34.37 Aligned_cols=33 Identities=24% Similarity=0.576 Sum_probs=26.1
Q ss_pred eeeecccccee----eecCCCCeEEcCCCCCcccccC
Q 033096 41 QMVCGSCRRLL----AYPRGARHVKCSCCQTVNFVLE 73 (127)
Q Consensus 41 QLvCggCr~lL----~YprGA~sVrCs~C~tVn~v~~ 73 (127)
=+.|..||..| .+..|...++|..|++.|.+|+
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCCCch
Confidence 47888888866 5667888888888888888764
No 25
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=49.54 E-value=8.7 Score=26.11 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=25.6
Q ss_pred ceeeEEcCCCCeeeeeeCCCCeEeCCCCCCc
Q 033096 76 QVGQVKCASCAVLLMYPYGAPSVRCSSCCFV 106 (127)
Q Consensus 76 e~a~v~Cg~Crt~L~yP~GA~SVrCa~C~tV 106 (127)
|-..-.|..|+..+++-+++...+|..|..+
T Consensus 24 q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred ccccCcCCCCCCcceeccCCCeEECCCCCCE
Confidence 3446679999999999999999999999875
No 26
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=49.27 E-value=6.2 Score=35.58 Aligned_cols=35 Identities=23% Similarity=0.662 Sum_probs=29.2
Q ss_pred cceeeecccccee----eecCCCCeEEcCCCCCcccccC
Q 033096 39 MAQMVCGSCRRLL----AYPRGARHVKCSCCQTVNFVLE 73 (127)
Q Consensus 39 ~sQLvCggCr~lL----~YprGA~sVrCs~C~tVn~v~~ 73 (127)
.+=+.|..||..| .+..|...++|..|...|.+|+
T Consensus 92 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~ 130 (766)
T 3eh2_A 92 SGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPP 130 (766)
T ss_dssp GCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCT
T ss_pred CCCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCH
Confidence 4558999999976 4667888999999999999885
No 27
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.70 E-value=6.5 Score=28.55 Aligned_cols=54 Identities=24% Similarity=0.423 Sum_probs=41.6
Q ss_pred ceeeeccccceeeecCCCCeEEcCCCCCcccccCccceeeEEcCCCCeeeeeeCCCCeEeCCCCCCc
Q 033096 40 AQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSVRCSSCCFV 106 (127)
Q Consensus 40 sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP~GA~SVrCa~C~tV 106 (127)
+.-.|.-|...+- ..+++.+.|..|+ +-+|..|+....+-.....-.|.+|+.-
T Consensus 54 ~~~~C~~C~~~~g-~l~~~g~~C~~C~------------~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLG-MLGSASVVCEDCK------------KNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCS-TTSCCEEECTTTC------------CEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcc-cccCCCCCCCCCC------------cccccccCCccCCCCCccceechhhHHH
Confidence 5678999999886 4556779999997 4559999998766566777888877653
No 28
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.57 E-value=25 Score=23.25 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=28.3
Q ss_pred Cccccceeeeccccce-eeecCCCCeEEcCCCCCcccccC
Q 033096 35 SPSEMAQMVCGSCRRL-LAYPRGARHVKCSCCQTVNFVLE 73 (127)
Q Consensus 35 ~~~~~sQLvCggCr~l-L~YprGA~sVrCs~C~tVn~v~~ 73 (127)
|.+-+-...|.+|..+ ..|.+-++.|.|..|.++=.-|.
T Consensus 9 PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PT 48 (63)
T 3j20_W 9 PRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPT 48 (63)
T ss_dssp CSCCEEEEECSSSCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred CCCcEEEEECCCCCCeeEEEecCCeEEEccCcCCEEecCC
Confidence 4566677788888654 56888888888888888765553
No 29
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=46.30 E-value=16 Score=23.88 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=16.3
Q ss_pred EEcCCCCeeeeeeCCCCeEeCCCCCCceeec
Q 033096 80 VKCASCAVLLMYPYGAPSVRCSSCCFVTEIG 110 (127)
Q Consensus 80 v~Cg~Crt~L~yP~GA~SVrCa~C~tVT~V~ 110 (127)
+.|..|+..|.|-.......|..|+..-.|.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIK 39 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 4455555555555555555555555554444
No 30
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=45.54 E-value=14 Score=34.26 Aligned_cols=33 Identities=24% Similarity=0.576 Sum_probs=26.1
Q ss_pred eeeecccccee----eecCCCCeEEcCCCCCcccccC
Q 033096 41 QMVCGSCRRLL----AYPRGARHVKCSCCQTVNFVLE 73 (127)
Q Consensus 41 QLvCggCr~lL----~YprGA~sVrCs~C~tVn~v~~ 73 (127)
=+.|..||..| .+..|...++|..|.+.|.+++
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~ 264 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 264 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCCCch
Confidence 47888888866 5677888888888888887764
No 31
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=45.17 E-value=17 Score=23.78 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=12.9
Q ss_pred EcCCCCeeeeeeCCCCeEeCCCCCCceee
Q 033096 81 KCASCAVLLMYPYGAPSVRCSSCCFVTEI 109 (127)
Q Consensus 81 ~Cg~Crt~L~yP~GA~SVrCa~C~tVT~V 109 (127)
.|..|+..|.|-.......|..|+..-.|
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQAKLAYPI 38 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETTTTEEEEE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 34444444444444444444444444444
No 32
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=45.12 E-value=18 Score=23.71 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=13.0
Q ss_pred EcCCCCeeeeeeCCCCeEeCCCCCCceee
Q 033096 81 KCASCAVLLMYPYGAPSVRCSSCCFVTEI 109 (127)
Q Consensus 81 ~Cg~Crt~L~yP~GA~SVrCa~C~tVT~V 109 (127)
.|..|+..|.|-.......|..|+..-.|
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 10 VCPVCKGRLEFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp BCTTTCCBEEEETTTTEEEETTTTEEEEE
T ss_pred ECCCCCCcCEEeCCCCEEEcCCCCceecC
Confidence 34444444444444444444444444444
No 33
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=44.97 E-value=7.1 Score=27.96 Aligned_cols=37 Identities=24% Similarity=0.649 Sum_probs=28.5
Q ss_pred CCccccceeeeccccce-------eeecCCCCeEEcCCCCCccc
Q 033096 34 PSPSEMAQMVCGSCRRL-------LAYPRGARHVKCSCCQTVNF 70 (127)
Q Consensus 34 p~~~~~sQLvCggCr~l-------L~YprGA~sVrCs~C~tVn~ 70 (127)
|.+..+-+..|..|.+- .+|-.|...|+|+.|+.--.
T Consensus 6 ~~~~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~Hl 49 (100)
T 2e2z_A 6 DKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHL 49 (100)
T ss_dssp CCCEEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEE
T ss_pred CCCcEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceE
Confidence 44556678889988763 67899999999999987643
No 34
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.96 E-value=5.4 Score=27.21 Aligned_cols=53 Identities=19% Similarity=0.540 Sum_probs=39.4
Q ss_pred cccceeeeccccceeeecCCCCeEEcCCCCCcccccCccceeeEEcCCCCeeeeeeCCCCeEeCCCCCCc
Q 033096 37 SEMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSVRCSSCCFV 106 (127)
Q Consensus 37 ~~~sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP~GA~SVrCa~C~tV 106 (127)
...++-.|.-|..-|- ..+.+.+.|..|+ +-+|..||+.. .+ .+-+|.+|+..
T Consensus 21 ~~~~~r~CarC~~~LG-~l~~~g~~C~~Ck------------~rVC~~Crv~~---~~-~~W~C~VC~k~ 73 (76)
T 2csz_A 21 QHYSDRTCARCQESLG-RLSPKTNTCRGCN------------HLVCRDCRIQE---SN-GTWRCKVCSGP 73 (76)
T ss_dssp TTCCCCBCSSSCCBCS-SSCTTTSEETTTT------------EECCTTSEEEC---ST-TCEEEHHHHSS
T ss_pred cCCCccchhhhCcccc-ccccCCCcCcccC------------hhhcccccccC---CC-CCEEEeeCchh
Confidence 3568889999999887 4566667788885 77899999764 23 67888877643
No 35
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=44.37 E-value=15 Score=24.10 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=6.7
Q ss_pred eeeccccceeeecC
Q 033096 42 MVCGSCRRLLAYPR 55 (127)
Q Consensus 42 LvCggCr~lL~Ypr 55 (127)
|+|-.|+.-|.|..
T Consensus 9 L~CP~ck~~L~~~~ 22 (69)
T 2pk7_A 9 LACPICKGPLKLSA 22 (69)
T ss_dssp CCCTTTCCCCEECT
T ss_pred eeCCCCCCcCeEeC
Confidence 44444554444443
No 36
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=43.00 E-value=11 Score=21.38 Aligned_cols=25 Identities=24% Similarity=0.694 Sum_probs=18.4
Q ss_pred CeEEcCCCCCcccccCccceeeEEcCCCCee
Q 033096 58 RHVKCSCCQTVNFVLEAHQVGQVKCASCAVL 88 (127)
Q Consensus 58 ~sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~ 88 (127)
.-..|+.|..+|++. ...|..|++.
T Consensus 5 gDW~C~~C~~~Nfa~------R~~C~~C~~p 29 (33)
T 2k1p_A 5 NDWQCKTCSNVNWAR------RSECNMCNTP 29 (33)
T ss_dssp SSCBCSSSCCBCCTT------CSBCSSSCCB
T ss_pred CCcccCCCCCccccc------cccccccCCc
Confidence 346789999999866 4557777764
No 37
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=42.05 E-value=26 Score=24.19 Aligned_cols=39 Identities=13% Similarity=0.425 Sum_probs=31.3
Q ss_pred Cccccceeeeccccc-eeeecCCCCeEEcCCCCCcccccC
Q 033096 35 SPSEMAQMVCGSCRR-LLAYPRGARHVKCSCCQTVNFVLE 73 (127)
Q Consensus 35 ~~~~~sQLvCggCr~-lL~YprGA~sVrCs~C~tVn~v~~ 73 (127)
|.+-+-...|.||.. ...|..-++-|.|..|+++=.-|.
T Consensus 26 PnS~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PT 65 (81)
T 2xzm_6 26 PNSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPT 65 (81)
T ss_dssp CSCCEEEEECSSSCCEEEEETTCSSCEECSSSCCEEEEEC
T ss_pred CCCcEEEeECCCCCCeeEEEecCccEEEccCCCCEEeecC
Confidence 356677889999975 478999999999999999866554
No 38
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=41.81 E-value=9.4 Score=25.05 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=15.2
Q ss_pred eeEEcCCCCeeeeeeCCCCeEeCCCCCC
Q 033096 78 GQVKCASCAVLLMYPYGAPSVRCSSCCF 105 (127)
Q Consensus 78 a~v~Cg~Crt~L~yP~GA~SVrCa~C~t 105 (127)
..-.|+.|++..-+-.+ ..|||+.|.+
T Consensus 20 v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~ 46 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK-EVIRCRECGH 46 (63)
T ss_dssp CCCBCSSSCCBCCCCSS-SCCCCSSSCC
T ss_pred eEEECCCCCCeeecCCC-CceECCCCCc
Confidence 34456666666655443 3466666654
No 39
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=41.23 E-value=14 Score=20.73 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=18.6
Q ss_pred CeEEcCCCCCcccccCccceeeEEcCCCCee
Q 033096 58 RHVKCSCCQTVNFVLEAHQVGQVKCASCAVL 88 (127)
Q Consensus 58 ~sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~ 88 (127)
.-..|+.|.++|++. ...|-.|++.
T Consensus 4 gDW~C~~C~~~Nfa~------r~~C~~C~~p 28 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRK------RLKCFRCGAD 28 (32)
T ss_dssp SEEECTTTCCEEETT------CCBCTTTCCB
T ss_pred CCCCcCcCcCCcChh------cceecCCCCc
Confidence 456788999999865 4568888764
No 40
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=40.79 E-value=18 Score=32.77 Aligned_cols=32 Identities=19% Similarity=0.589 Sum_probs=23.6
Q ss_pred EEcCCCCeee----eeeCCCCeEeCCCCCCceeecc
Q 033096 80 VKCASCAVLL----MYPYGAPSVRCSSCCFVTEIGV 111 (127)
Q Consensus 80 v~Cg~Crt~L----~yP~GA~SVrCa~C~tVT~V~~ 111 (127)
++|.+|++.| .+-.|.+..+|..|...|.++.
T Consensus 113 vRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 113 VRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp CBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CccCCccCEecCceEEeCCCCEEEccCCCCcCCCch
Confidence 5566666644 3446788999999999998875
No 41
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=40.50 E-value=22 Score=32.00 Aligned_cols=32 Identities=38% Similarity=0.680 Sum_probs=24.3
Q ss_pred eeeecccccee----eecCCCCeEEcCCCCCcccccC
Q 033096 41 QMVCGSCRRLL----AYPRGARHVKCSCCQTVNFVLE 73 (127)
Q Consensus 41 QLvCggCr~lL----~YprGA~sVrCs~C~tVn~v~~ 73 (127)
=+.|..||..| .+.+| ..++|..|...|.+|+
T Consensus 85 p~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~ 120 (751)
T 3eh1_A 85 IVRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPE 120 (751)
T ss_dssp CCBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCG
T ss_pred CCcccCccCEeCCceEEecC-CEEEcccccCCCCCCH
Confidence 37888888865 34445 7888999988888875
No 42
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=40.32 E-value=14 Score=25.98 Aligned_cols=31 Identities=26% Similarity=0.571 Sum_probs=21.1
Q ss_pred EEcCCCCeeeeeeC----CCCeEeCCCCCCceeec
Q 033096 80 VKCASCAVLLMYPY----GAPSVRCSSCCFVTEIG 110 (127)
Q Consensus 80 v~Cg~Crt~L~yP~----GA~SVrCa~C~tVT~V~ 110 (127)
.-|..|+.+|..+. +...+.|..|.+...+.
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 45777887777663 34567788887766554
No 43
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=40.11 E-value=21 Score=21.96 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=19.3
Q ss_pred eEEcCCCCeeeeeeCCCCeEeCCCCCCce
Q 033096 79 QVKCASCAVLLMYPYGAPSVRCSSCCFVT 107 (127)
Q Consensus 79 ~v~Cg~Crt~L~yP~GA~SVrCa~C~tVT 107 (127)
-..|..|+..| ..+..+|..|..+-
T Consensus 22 pt~C~~C~~~i----~kqg~kC~~C~~~c 46 (59)
T 1rfh_A 22 PGWCDLCGREV----LRQALRCANCKFTC 46 (59)
T ss_dssp CEECTTTCSEE----CSCCEECTTTSCEE
T ss_pred CeEchhcchhh----hhCccEeCCCCCeE
Confidence 45699998888 57788999887653
No 44
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=40.08 E-value=22 Score=20.75 Aligned_cols=24 Identities=25% Similarity=0.711 Sum_probs=18.4
Q ss_pred eEEcCCCCeeeeeeCCCCeEeCCCCCCce
Q 033096 79 QVKCASCAVLLMYPYGAPSVRCSSCCFVT 107 (127)
Q Consensus 79 ~v~Cg~Crt~L~yP~GA~SVrCa~C~tVT 107 (127)
-..|..|+..|. +..+|..|...-
T Consensus 14 pt~C~~C~~~l~-----qG~~C~~C~~~~ 37 (52)
T 1faq_A 14 LAFCDICQKFLL-----NGFRCQTCGYKF 37 (52)
T ss_dssp CEECTTSSSEEC-----SEEECTTTTCCB
T ss_pred CcCCCCcccccc-----cCCEeCCCCCeE
Confidence 356889988775 688999887654
No 45
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=39.40 E-value=17 Score=24.36 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=27.1
Q ss_pred eeeEEcCCCCe-eeeeeCCCCeEeCCCCCCceeecc
Q 033096 77 VGQVKCASCAV-LLMYPYGAPSVRCSSCCFVTEIGV 111 (127)
Q Consensus 77 ~a~v~Cg~Crt-~L~yP~GA~SVrCa~C~tVT~V~~ 111 (127)
+..+.|.+|.. ..++-.-+..|+|..|.++---+.
T Consensus 5 Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PT 40 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPT 40 (66)
T ss_dssp EEEEECTTTCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred eEEEECCCCCCceEEEecCceEEEcccCCCEEeecC
Confidence 56788999975 567778888899999998765543
No 46
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=37.04 E-value=27 Score=23.26 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=24.7
Q ss_pred ccccceeeeccccceeeecCCCCeEEcCCCCCcccc
Q 033096 36 PSEMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 71 (127)
Q Consensus 36 ~~~~sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v 71 (127)
...+.++.|..|...-.=+..--..+|+.|.+.|..
T Consensus 32 ~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr 67 (79)
T 2k2d_A 32 QNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTA 67 (79)
T ss_dssp -CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEE
T ss_pred hCCEeEEECCCCCCCccCCceeecccCcCCCCcCeE
Confidence 355678889988876655544444478888888853
No 47
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=36.95 E-value=22 Score=33.05 Aligned_cols=33 Identities=18% Similarity=0.552 Sum_probs=25.0
Q ss_pred eEEcCCCCeee----eeeCCCCeEeCCCCCCceeecc
Q 033096 79 QVKCASCAVLL----MYPYGAPSVRCSSCCFVTEIGV 111 (127)
Q Consensus 79 ~v~Cg~Crt~L----~yP~GA~SVrCa~C~tVT~V~~ 111 (127)
-++|.+||+.| .+-.+.+..+|..|...|.++.
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~ 264 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 264 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCCCch
Confidence 36677777754 3456788999999999998874
No 48
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.62 E-value=50 Score=23.72 Aligned_cols=64 Identities=25% Similarity=0.516 Sum_probs=46.7
Q ss_pred CCccccceeeeccccceeeecCCCCeEEcCCCCCcccccCccceeeEEcCCCCeeeeee--CCCCeEeCCCCCCce
Q 033096 34 PSPSEMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYP--YGAPSVRCSSCCFVT 107 (127)
Q Consensus 34 p~~~~~sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP--~GA~SVrCa~C~tVT 107 (127)
|-++-|. +.|..|.+.|...-| ...|.-|+.- + ..+-.|..|+..|.+= =||-..-|..|+...
T Consensus 26 ~~~~~M~-~~CP~Cq~eL~~~g~--~~hC~~C~~~-f------~~~a~CPdC~q~LevLkACGAvdYFC~~chgLi 91 (101)
T 2jne_A 26 PRGSHME-LHCPQCQHVLDQDNG--HARCRSCGEF-I------EMKALCPDCHQPLQVLKACGAVDYFCQHGHGLI 91 (101)
T ss_dssp -----CC-CBCSSSCSBEEEETT--EEEETTTCCE-E------EEEEECTTTCSBCEEEEETTEEEEEETTTTEEE
T ss_pred cCccccc-ccCccCCCcceecCC--EEECccccch-h------hccccCcchhhHHHHHHHhcCcchhhccCCcee
Confidence 3445466 999999999996544 5679999873 2 3467799999998764 589999999998754
No 49
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=36.59 E-value=17 Score=32.72 Aligned_cols=35 Identities=23% Similarity=0.631 Sum_probs=27.5
Q ss_pred eeEEcCCCCeee----eeeCCCCeEeCCCCCCceeeccC
Q 033096 78 GQVKCASCAVLL----MYPYGAPSVRCSSCCFVTEIGVC 112 (127)
Q Consensus 78 a~v~Cg~Crt~L----~yP~GA~SVrCa~C~tVT~V~~~ 112 (127)
.-++|..||+.| .+-.|.+..+|..|...|.++..
T Consensus 97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 135 (770)
T 3efo_B 97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPF 135 (770)
T ss_dssp CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGG
T ss_pred CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchH
Confidence 347899999876 33457789999999999999744
No 50
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=36.32 E-value=20 Score=32.36 Aligned_cols=35 Identities=17% Similarity=0.624 Sum_probs=27.4
Q ss_pred eeEEcCCCCeee----eeeCCCCeEeCCCCCCceeeccC
Q 033096 78 GQVKCASCAVLL----MYPYGAPSVRCSSCCFVTEIGVC 112 (127)
Q Consensus 78 a~v~Cg~Crt~L----~yP~GA~SVrCa~C~tVT~V~~~ 112 (127)
.-++|..||+.| .+-.|.+..+|..|...|.++..
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 131 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQ 131 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTT
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHH
Confidence 347899999865 23457789999999999999854
No 51
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.31 E-value=30 Score=22.56 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=7.2
Q ss_pred eeeeccccceeeecC
Q 033096 41 QMVCGSCRRLLAYPR 55 (127)
Q Consensus 41 QLvCggCr~lL~Ypr 55 (127)
-|+|--|+.-|.|..
T Consensus 10 iL~CP~ck~~L~~~~ 24 (67)
T 2jny_A 10 VLACPKDKGPLRYLE 24 (67)
T ss_dssp CCBCTTTCCBCEEET
T ss_pred HhCCCCCCCcCeEeC
Confidence 344555555555443
No 52
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=34.77 E-value=21 Score=26.28 Aligned_cols=39 Identities=18% Similarity=0.532 Sum_probs=26.7
Q ss_pred CcccccCccceeeE--EcCCCCeeeeeeCCCCeEeCCCCCCce
Q 033096 67 TVNFVLEAHQVGQV--KCASCAVLLMYPYGAPSVRCSSCCFVT 107 (127)
Q Consensus 67 tVn~v~~~~e~a~v--~Cg~Crt~L~yP~GA~SVrCa~C~tVT 107 (127)
.+.+.--+++.+.+ .|..|+..| +|.+ ...+|+.|..+-
T Consensus 126 ~i~LS~k~~~lGvv~a~~~~~g~~m-~~~~-~~~~cp~~g~~e 166 (179)
T 3m7n_A 126 NLRLSTKEEEMGVLRALCSNCKTEM-VREG-DILKCPECGRVE 166 (179)
T ss_dssp TTEEECCSTTCEEEECBCTTTCCBC-EECS-SSEECSSSCCEE
T ss_pred eEEEEEecCCCCEEEecccccCCce-EECC-CEEECCCCCCEE
Confidence 34443334445544 477888765 8999 999999998764
No 53
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=32.41 E-value=35 Score=23.64 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=20.0
Q ss_pred EcCCCCeeeeeeCCC----CeEeCCCCCCceeec
Q 033096 81 KCASCAVLLMYPYGA----PSVRCSSCCFVTEIG 110 (127)
Q Consensus 81 ~Cg~Crt~L~yP~GA----~SVrCa~C~tVT~V~ 110 (127)
-|..|+.+|....+. ....|..|.++-.+.
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 377787776655432 367788888876664
No 54
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=32.40 E-value=41 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.451 Sum_probs=31.7
Q ss_pred Cccccceeeeccccce-eeecCCCCeEEcCCCCCcccccCc
Q 033096 35 SPSEMAQMVCGSCRRL-LAYPRGARHVKCSCCQTVNFVLEA 74 (127)
Q Consensus 35 ~~~~~sQLvCggCr~l-L~YprGA~sVrCs~C~tVn~v~~~ 74 (127)
|.+-+-.+.|.||..+ ..|..-++-|.|..|+++=.-|.|
T Consensus 28 PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PTG 68 (82)
T 3u5c_b 28 PRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTG 68 (82)
T ss_dssp CCCCEEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEECCS
T ss_pred CCCcEEEEECCCCCCeeEEEecCCeEEEccccCCEEeccCC
Confidence 4566778899999764 678888999999999998766643
No 55
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=32.38 E-value=31 Score=22.79 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=21.3
Q ss_pred ceeeeccccceeeecCCCCeEEcCCCCCcccc
Q 033096 40 AQMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 71 (127)
Q Consensus 40 sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v 71 (127)
.-+.|. |..++.=..|+...+|+ |.+.-.+
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeee
Confidence 446777 77777777777777787 7765544
No 56
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=31.87 E-value=27 Score=21.86 Aligned_cols=26 Identities=19% Similarity=0.516 Sum_probs=13.8
Q ss_pred EcCCCCeeeeeeCCCCeEeCCCCCCc
Q 033096 81 KCASCAVLLMYPYGAPSVRCSSCCFV 106 (127)
Q Consensus 81 ~Cg~Crt~L~yP~GA~SVrCa~C~tV 106 (127)
.|..|+..+++........|..|++.
T Consensus 20 fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 20 FCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred cCcCCCCceeEeccCCEEECCCCCCE
Confidence 35555555444444455566666553
No 57
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=31.12 E-value=53 Score=23.10 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=29.5
Q ss_pred ccceeeeccccceeeecCCCCeEEcCCCCCcccccCccceeeEEcCCCCeeeeeeCCC
Q 033096 38 EMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGA 95 (127)
Q Consensus 38 ~~sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP~GA 95 (127)
+.-+.+|..|.++|..-..++ |+ ..........+.|..|+..--||.+.
T Consensus 62 ~~KR~~Ck~C~s~LiPG~t~~-vr--------i~~~~~~~vv~tCl~Cg~~kR~p~~~ 110 (120)
T 1x0t_A 62 KWKRRYCKRCHTFLIPGVNAR-VR--------LRTKRMPHVVITCLECGYIMRYPYLR 110 (120)
T ss_dssp TTTTSBCTTTCCBCCBTTTEE-EE--------EECSSSCEEEEEETTTCCEEEEECC-
T ss_pred HHHHHhccCCCCEeECCCceE-EE--------EecCCccEEEEECCCCCCEEEEccCc
Confidence 346779999999998754432 22 11111113556677777777777664
No 58
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=30.32 E-value=30 Score=31.16 Aligned_cols=32 Identities=22% Similarity=0.527 Sum_probs=21.6
Q ss_pred EEcCCCCeee----eeeCCCCeEeCCCCCCceeeccC
Q 033096 80 VKCASCAVLL----MYPYGAPSVRCSSCCFVTEIGVC 112 (127)
Q Consensus 80 v~Cg~Crt~L----~yP~GA~SVrCa~C~tVT~V~~~ 112 (127)
++|..||+.| .+..| +..+|..|...|.++..
T Consensus 86 ~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~~ 121 (751)
T 3eh1_A 86 VRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEE 121 (751)
T ss_dssp CBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCGG
T ss_pred CcccCccCEeCCceEEecC-CEEEcccccCCCCCCHH
Confidence 5566666543 12234 88999999999998753
No 59
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=29.78 E-value=28 Score=22.36 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=16.3
Q ss_pred EEcCCCCeeeeeeCCCCeEeCCCCCCc
Q 033096 80 VKCASCAVLLMYPYGAPSVRCSSCCFV 106 (127)
Q Consensus 80 v~Cg~Crt~L~yP~GA~SVrCa~C~tV 106 (127)
..|..|+..| +.+..+|..|...
T Consensus 36 t~C~~C~~~l----~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 36 GWCDLCGREV----LRQALRCANCKFT 58 (72)
T ss_dssp CBCTTTSSBC----SSCCEECTTSSCE
T ss_pred cchhhhhHHH----HhCcCccCCCCCe
Confidence 4577887777 5667788877654
No 60
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.37 E-value=28 Score=22.71 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=15.7
Q ss_pred cCCCCeeeeeeCCCCeEeCCCCCCceeec
Q 033096 82 CASCAVLLMYPYGAPSVRCSSCCFVTEIG 110 (127)
Q Consensus 82 Cg~Crt~L~yP~GA~SVrCa~C~tVT~V~ 110 (127)
|..|+..|.|-.+.....|..|+..-.|.
T Consensus 11 CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 11 CPICKGPLKLSADKTELISKGAGLAYPIR 39 (69)
T ss_dssp CTTTCCCCEECTTSSEEEETTTTEEEEEE
T ss_pred CCCCCCcCeEeCCCCEEEcCCCCcEecCc
Confidence 55555555555555555555555555544
No 61
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.12 E-value=30 Score=22.52 Aligned_cols=33 Identities=15% Similarity=0.402 Sum_probs=22.4
Q ss_pred cceeeeccccceeeecCCCCeEEcCCCCCcccc
Q 033096 39 MAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 71 (127)
Q Consensus 39 ~sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v 71 (127)
..-|+|-.|+.-|.|..+...-.|..|...-++
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKSKDELICKGDRLAFPI 38 (68)
T ss_dssp EEECBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 345788888888888876655666666554443
No 62
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.84 E-value=31 Score=22.43 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=22.0
Q ss_pred cceeeeccccceeeecCCCCeEEcCCCCCcccc
Q 033096 39 MAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 71 (127)
Q Consensus 39 ~sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v 71 (127)
..-|+|-.|+.-|.|-.....-.|..|...-++
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYHQDKQELWSRQAKLAYPI 38 (68)
T ss_dssp SCCCBCSSSCCBCEEETTTTEEEETTTTEEEEE
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 345788888888888876655556555544433
No 63
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.75 E-value=36 Score=22.34 Aligned_cols=24 Identities=33% Similarity=0.751 Sum_probs=10.0
Q ss_pred EcCCCCeeeeeeCCCCeEeCCCCCC
Q 033096 81 KCASCAVLLMYPYGAPSVRCSSCCF 105 (127)
Q Consensus 81 ~Cg~Crt~L~yP~GA~SVrCa~C~t 105 (127)
.|+.|+...-.- ....|+|..|++
T Consensus 30 ~C~~CG~~~e~~-~~d~irCp~CG~ 53 (70)
T 1twf_L 30 ICAECSSKLSLS-RTDAVRCKDCGH 53 (70)
T ss_dssp ECSSSCCEECCC-TTSTTCCSSSCC
T ss_pred ECCCCCCcceeC-CCCCccCCCCCc
Confidence 355555442221 223345555554
No 64
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.42 E-value=36 Score=22.27 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=22.7
Q ss_pred cceeeeccccceeeecCCCCeEEcCCCCCcccc
Q 033096 39 MAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 71 (127)
Q Consensus 39 ~sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v 71 (127)
..-|+|-.|+.-|.|......-.|..|...-++
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 6 LDILVCPVCKGRLEFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCCBCTTTCCBEEEETTTTEEEETTTTEEEEE
T ss_pred hhheECCCCCCcCEEeCCCCEEEcCCCCceecC
Confidence 345788889988988876655666666554443
No 65
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=26.34 E-value=40 Score=19.31 Aligned_cols=26 Identities=23% Similarity=0.658 Sum_probs=17.8
Q ss_pred EEcCCCCeeeeeeCCCCeEeCCCCCCc
Q 033096 80 VKCASCAVLLMYPYGAPSVRCSSCCFV 106 (127)
Q Consensus 80 v~Cg~Crt~L~yP~GA~SVrCa~C~tV 106 (127)
..|..|+..| .=.+.+..+|..|...
T Consensus 12 t~C~~C~~~l-~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 12 TFCDHCGSLL-WGLVKQGLKCEDCGMN 37 (50)
T ss_dssp CBCTTTCCBC-CSSSSCEEEETTTCCE
T ss_pred CCcCCCCcee-eccCCccCEeCCCCCe
Confidence 4588887766 3345678888888654
No 66
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=25.91 E-value=55 Score=25.40 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=24.7
Q ss_pred cceeeEEcCCCCeeeeeeCCCC--eEeCCCCCCcee
Q 033096 75 HQVGQVKCASCAVLLMYPYGAP--SVRCSSCCFVTE 108 (127)
Q Consensus 75 ~e~a~v~Cg~Crt~L~yP~GA~--SVrCa~C~tVT~ 108 (127)
.......|..|+...+...+.. ++.|+.|+.-.+
T Consensus 130 ~~L~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~~psR 165 (192)
T 2avu_E 130 GLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165 (192)
T ss_dssp TSEEEEECTTTCCEEEEESSCCSSCCCCTTC-----
T ss_pred CceeeCcCCCCCCCeeCccCCCCCCCcCCCCCCccc
Confidence 4556677999999999988876 999999996554
No 67
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=25.81 E-value=70 Score=21.20 Aligned_cols=34 Identities=12% Similarity=0.318 Sum_probs=28.2
Q ss_pred cceeeEEcCCCCeeeeeeCCCCeEeCCCCCCcee
Q 033096 75 HQVGQVKCASCAVLLMYPYGAPSVRCSSCCFVTE 108 (127)
Q Consensus 75 ~e~a~v~Cg~Crt~L~yP~GA~SVrCa~C~tVT~ 108 (127)
.....+.|..|+..-.++..---.+|+.|+..+.
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred CCEeEEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 4566889999999999998777779999998754
No 68
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=25.58 E-value=43 Score=18.82 Aligned_cols=18 Identities=50% Similarity=1.123 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCCCcc
Q 033096 20 PPPGWQPIPPPLPVPSPS 37 (127)
Q Consensus 20 ~~~gw~~~~~~~~~p~~~ 37 (127)
|.||-..+|+|+|+|-..
T Consensus 6 plPg~~giPpPpplPg~~ 23 (26)
T 2v8f_C 6 PLPGVASIPPPPPLPGXX 23 (26)
T ss_pred CCCCCCCCCCCCCCCCcc
Confidence 567877788877777543
No 69
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=25.04 E-value=31 Score=24.99 Aligned_cols=37 Identities=22% Similarity=0.513 Sum_probs=20.2
Q ss_pred ccceeeE-EcCCCCeeeeeeCC----CCeEeCCCCCCceeec
Q 033096 74 AHQVGQV-KCASCAVLLMYPYG----APSVRCSSCCFVTEIG 110 (127)
Q Consensus 74 ~~e~a~v-~Cg~Crt~L~yP~G----A~SVrCa~C~tVT~V~ 110 (127)
..+|..+ -|..|+.+|....+ .....|..|.++-.+.
T Consensus 18 ~~~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~ 59 (133)
T 3qt1_I 18 GSHMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 59 (133)
T ss_dssp ----CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCS
T ss_pred CccccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcC
Confidence 3344433 37888776655443 2357788887766554
No 70
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.32 E-value=24 Score=24.66 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=24.9
Q ss_pred cceeeEEcCCCCe-eeeeeCCCCeEeCCCCCCceeec
Q 033096 75 HQVGQVKCASCAV-LLMYPYGAPSVRCSSCCFVTEIG 110 (127)
Q Consensus 75 ~e~a~v~Cg~Crt-~L~yP~GA~SVrCa~C~tVT~V~ 110 (127)
.-...+.|.+|.. ..++-.-+..|.|..|.++---+
T Consensus 32 S~Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 32 SFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp -CEEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred CcEeEEECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 3456788888875 45666777788888888875433
No 71
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=23.82 E-value=38 Score=21.92 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=14.1
Q ss_pred EEcCCCCeeeeeeCCCCeEeCCCCCCceeec
Q 033096 80 VKCASCAVLLMYPYGAPSVRCSSCCFVTEIG 110 (127)
Q Consensus 80 v~Cg~Crt~L~yP~GA~SVrCa~C~tVT~V~ 110 (127)
..|..|++.-+ .-.|+.|+..|.+.
T Consensus 7 r~C~~CgvYTL------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 7 KKCPKCGLYTL------KEICPKCGEKTVIP 31 (60)
T ss_dssp EECTTTCCEES------SSBCSSSCSBCBCC
T ss_pred eeCCCCCCEec------cccCcCCCCcCCCC
Confidence 34666655433 44466666666654
No 72
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.41 E-value=33 Score=22.21 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=12.5
Q ss_pred eEEcCC--CCeeeeeeCCCCeEeCC
Q 033096 79 QVKCAS--CAVLLMYPYGAPSVRCS 101 (127)
Q Consensus 79 ~v~Cg~--Crt~L~yP~GA~SVrCa 101 (127)
.++|.. |...+....+...|.|+
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~ 49 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCE 49 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTT
T ss_pred cEECCCCCCCcccEECCCCCcCCCC
Confidence 444554 55555555555555565
No 73
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=22.30 E-value=46 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=25.4
Q ss_pred eEEcCCCCeeeeeeCCCCeEeCCCCCCcee
Q 033096 79 QVKCASCAVLLMYPYGAPSVRCSSCCFVTE 108 (127)
Q Consensus 79 ~v~Cg~Crt~L~yP~GA~SVrCa~C~tVT~ 108 (127)
+-.|+.|+..+....+...-.|+.|+.+.-
T Consensus 107 ~~fC~~CG~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp TSBCTTTCCBEEECSSSSCEEESSSSCEEC
T ss_pred CCccccCCCcCccCCCceeeeCCCCCCEec
Confidence 456999999998888888999999988644
No 74
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=22.27 E-value=1.1e+02 Score=21.70 Aligned_cols=49 Identities=27% Similarity=0.490 Sum_probs=29.6
Q ss_pred ccceeeeccccceeeecCCCCeEEcCCCCCcccccCccceeeEEcCCCCeeeeeeCCC
Q 033096 38 EMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGA 95 (127)
Q Consensus 38 ~~sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP~GA 95 (127)
+.-+.+|..|.++|..-..++ |+ ......-...+.|..|+..--||.+.
T Consensus 57 ~~KR~~Ck~C~s~LIPG~t~~-vr--------i~~~~k~~vv~tCl~Cg~~kR~p~~~ 105 (123)
T 2k3r_A 57 KWKRRYCKKCHAFLVPGINAR-VR--------LRQKRMPHIVVKCLECGHIMRYPYIK 105 (123)
T ss_dssp TTTTSBCTTTCCBCCBTTTEE-EE--------EECSSSCEEEEEETTTTEEEEEECCC
T ss_pred HHHHHhccCCCCEeECCCceE-EE--------EecCCccEEEEECCCCCCEEEEecCc
Confidence 346779999999998754442 11 11111113456677777777777654
No 75
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=21.77 E-value=1.4e+02 Score=22.19 Aligned_cols=56 Identities=25% Similarity=0.666 Sum_probs=32.5
Q ss_pred ccceeeeccccceeeecCCCCeEEcCCCCCcccccCccceeeEEcCCCCeeeeeeCCCCeEeCCCCCCceeec
Q 033096 38 EMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSVRCSSCCFVTEIG 110 (127)
Q Consensus 38 ~~sQLvCggCr~lL~YprGA~sVrCs~C~tVn~v~~~~e~a~v~Cg~Crt~L~yP~GA~SVrCa~C~tVT~V~ 110 (127)
....++|+.|++.+.+.. .|+.|.+ .++.-.|.-|.-. =.+.....|.-|. |-+|+
T Consensus 55 ~~~~vlCg~C~~~q~~~~-----~C~~Cg~--------~f~~Y~C~~C~l~---d~~k~~yHC~~Cg-iCR~G 110 (143)
T 2dkt_A 55 KVKEVQCINCEKLQHAQQ-----TCEDCST--------LFGEYYCSICHLF---DKDKRQYHCESCG-ICRIG 110 (143)
T ss_dssp SCCCEEESSSCCEECSCS-----BCSSSCC--------BSCSEECSSSCCE---ECSSSEEEETTTT-EEEES
T ss_pred ccceeeecccCccccccC-----cCCCCCc--------cceeeEeceeecc---cCCCceecCCCCC-ceecc
Confidence 345899999999997632 6777752 2344456666432 1445555555553 33443
No 76
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=21.57 E-value=50 Score=20.73 Aligned_cols=29 Identities=24% Similarity=0.679 Sum_probs=22.4
Q ss_pred eEEcCCCCeeeeeeCCCCeEeCCCCCCceee
Q 033096 79 QVKCASCAVLLMYPYGAPSVRCSSCCFVTEI 109 (127)
Q Consensus 79 ~v~Cg~Crt~L~yP~GA~SVrCa~C~tVT~V 109 (127)
-..|..|+..+- .|.+..+|..|..+-..
T Consensus 19 ~~~C~~Cg~~i~--~gkq~~kC~dC~~~cH~ 47 (61)
T 4b6d_A 19 PESCVPCGKRIK--FGKLSLKCRDCRVVSHP 47 (61)
T ss_dssp CEECTTTCCEEC--TTCEEEEESSSSCEECG
T ss_pred CcccccccCEEE--EeeEeeECCCCCCeEch
Confidence 357999987764 78899999999876543
No 77
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=21.42 E-value=47 Score=20.33 Aligned_cols=24 Identities=17% Similarity=0.348 Sum_probs=17.6
Q ss_pred eeEEcCCCCeeeeeeCCCCeEeCCCCCCc
Q 033096 78 GQVKCASCAVLLMYPYGAPSVRCSSCCFV 106 (127)
Q Consensus 78 a~v~Cg~Crt~L~yP~GA~SVrCa~C~tV 106 (127)
..+.|.+|... + |. -.+|+.|.-.
T Consensus 5 ~~~~Cd~C~~~-i---g~-R~~C~~C~dy 28 (52)
T 1tot_A 5 FVYTCNECKHH-V---ET-RWHCTVCEDY 28 (52)
T ss_dssp SCEEETTTTEE-E---SS-EEEESSSSSC
T ss_pred CEEECCCCCCC-C---cc-eEEcCCCCCc
Confidence 45789999987 2 54 5899998654
No 78
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=21.05 E-value=45 Score=19.11 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=9.2
Q ss_pred CCCCeEeCCCCCCceeec
Q 033096 93 YGAPSVRCSSCCFVTEIG 110 (127)
Q Consensus 93 ~GA~SVrCa~C~tVT~V~ 110 (127)
.+.-..+|..|++.+.|.
T Consensus 17 ~~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 17 GRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp TTEEEEEEETTTEEEEEC
T ss_pred CCcEEEEhhcCCCccccc
Confidence 344445555555555553
No 79
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=20.51 E-value=74 Score=17.92 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=16.1
Q ss_pred CeEeCCCCCCceee-ccCCceEEEee
Q 033096 96 PSVRCSSCCFVTEI-GVCGLSLFLCM 120 (127)
Q Consensus 96 ~SVrCa~C~tVT~V-~~~~~~~~~c~ 120 (127)
...+|..|.+|-.| ......++||-
T Consensus 5 ~fY~C~~CGnivev~~~g~~~l~CCG 30 (36)
T 1dxg_A 5 DVYKCELCGQVVKVLEEGGGTLVCCG 30 (36)
T ss_dssp CEEECTTTCCEEEEEECCSSCEEETT
T ss_pred cEEEcCCCCcEEEEEeCCCcCEEeCC
Confidence 35678888666554 45666777764
Done!