BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033097
         (127 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DJ7|A Chain A, Crystal Structure Of Ferredoxin Thioredoxin Reductase
          Length = 117

 Score =  122 bits (305), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 64/76 (84%)

Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 7   NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 66

Query: 99  AQQGFWNCPCVPMRER 114
            +  FWNCPCVPMRER
Sbjct: 67  VKNTFWNCPCVPMRER 82


>pdb|2PUK|A Chain A, Crystal Srtucture Of The Binary Complex Between
           Ferredoxin: Thioredoxin Reductase And Thioredoxin M
 pdb|2PUK|E Chain E, Crystal Srtucture Of The Binary Complex Between
           Ferredoxin: Thioredoxin Reductase And Thioredoxin M
 pdb|2PUO|A Chain A, Crystal Srtucture Of The Nem Modified
           Ferredoxin:thioredoxin Reductase
          Length = 109

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 64/76 (84%)

Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 1   NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 60

Query: 99  AQQGFWNCPCVPMRER 114
            +  FWNCPCVPMRER
Sbjct: 61  VKNTFWNCPCVPMRER 76


>pdb|2PU9|A Chain A, Crystal Srtucture Of The Binary Complex Between
           Ferredoxin: Thioredoxin Reductase And Thioredoxin F
 pdb|2PVO|A Chain A, Crystal Srtucture Of The Ternary Complex Between
           Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
           Reductase
          Length = 110

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 63/74 (85%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE +
Sbjct: 2   KTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVK 61

Query: 101 QGFWNCPCVPMRER 114
             FWNCPCVPMRER
Sbjct: 62  NTFWNCPCVPMRER 75


>pdb|2PVG|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin
           And Ferredoxin:thioredoxin Reductase
          Length = 108

 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 62/73 (84%)

Query: 42  SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
           ++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE + 
Sbjct: 3   TLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKN 62

Query: 102 GFWNCPCVPMRER 114
            FWNCPCVPMRER
Sbjct: 63  TFWNCPCVPMRER 75


>pdb|2PVD|A Chain A, Crystal Srtucture Of The Reduced Ferredoxin:thioredoxin
           Reductase
          Length = 107

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 59/69 (85%)

Query: 46  MRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWN 105
           M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY DK AE +  FWN
Sbjct: 4   MKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYADKEAEVKNTFWN 63

Query: 106 CPCVPMRER 114
           CPCVPMRER
Sbjct: 64  CPCVPMRER 72


>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
           Pspc1NONO
          Length = 261

 Score = 28.5 bits (62), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 8   CGSGVSTFICTPRPIIARPRPV--------TQIRAQVEPSEKSVEIMRKFSE------QY 53
           CG G      TPRP+I  P            ++  + +   K  E   +F++      +Y
Sbjct: 157 CGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEY 216

Query: 54  ARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRH 91
           A R      ++K     V + + + K+ L A +   RH
Sbjct: 217 ASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARH 254


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,363,343
Number of Sequences: 62578
Number of extensions: 112654
Number of successful extensions: 303
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 8
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)