BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033097
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49856|FTRC_SOYBN Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Glycine max GN=FTRC PE=2 SV=1
Length = 144
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/114 (71%), Positives = 90/114 (78%), Gaps = 4/114 (3%)
Query: 1 MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
MT Q+S V + + TP R R +RAQ EPS+KSVEIMRKFSEQYAR+S T+
Sbjct: 1 MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTY 56
Query: 61 FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE QGFWNCPCVPMRER
Sbjct: 57 FCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRER 110
>sp|Q9SJ89|FTRC_ARATH Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Arabidopsis thaliana GN=FTRC PE=2 SV=1
Length = 146
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/116 (72%), Positives = 88/116 (75%), Gaps = 6/116 (5%)
Query: 1 MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
M LQ+ C G S TPR R IRA+ EPSEKSVEIMRKFSEQYARRS
Sbjct: 1 MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56
Query: 59 TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE QGFWNCPCVPMRER
Sbjct: 57 TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRER 112
>sp|P41349|FTRC2_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Spinacia oleracea PE=2 SV=1
Length = 148
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 81/88 (92%)
Query: 27 RPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPL 86
RP I ++VEPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLA+HKDSLGAPL
Sbjct: 27 RPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLAEHKDSLGAPL 86
Query: 87 CPCRHYDDKAAEAQQGFWNCPCVPMRER 114
CPCR+YDDKAAEA QGFWNCPCVPMRER
Sbjct: 87 CPCRYYDDKAAEATQGFWNCPCVPMRER 114
>sp|P41348|FTRC1_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Spinacia oleracea GN=FTRC PE=1 SV=2
Length = 144
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 85/92 (92%), Gaps = 1/92 (1%)
Query: 24 ARPRPVTQ-IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSL 82
A PR ++ IRAQ +PS+KS+E+MRKFSEQ+ R+SDT+FCVDKSVT+VVIKGLADH+D+L
Sbjct: 19 ASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTAVVIKGLADHRDTL 78
Query: 83 GAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
GAPLCPCRHYDDK AEA+QGFWNCPCVPMRER
Sbjct: 79 GAPLCPCRHYDDKEAEAKQGFWNCPCVPMRER 110
>sp|P41347|FTRC_MAIZE Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Zea mays GN=FTRC PE=2 SV=1
Length = 152
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/95 (74%), Positives = 80/95 (84%), Gaps = 5/95 (5%)
Query: 24 ARPRPVTQIRAQVE----PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHK 79
RPR +RAQ ++KSVE+MRKFSEQYARRS+TFFC DK+VT+VVIKGLADH+
Sbjct: 25 GRPRRCA-VRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKGLADHR 83
Query: 80 DSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER 114
D+LGAPLCPCRHYDDKAAE QGFWNCPCVPMRER
Sbjct: 84 DTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRER 118
>sp|Q6K471|FTRC_ORYSJ Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Oryza sativa subsp. japonica GN=Os09g0249900 PE=2
SV=1
Length = 146
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
KS+EIMRKFSEQYARRS+TFFC +KSVT+VVIKGLADHKD LGAPLCPCRHYDDKAAE
Sbjct: 39 KSLEIMRKFSEQYARRSNTFFCSEKSVTAVVIKGLADHKDQLGAPLCPCRHYDDKAAEVA 98
Query: 101 QGFWNCPCVPMRER 114
QGFWNCPCVPMRER
Sbjct: 99 QGFWNCPCVPMRER 112
>sp|Q1XDA1|FTRC_PORYE Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra
yezoensis GN=ftrB PE=3 SV=2
Length = 116
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 62/74 (83%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
+++E MRKFSE YA+R+ TFFC+D SVT+VVI+GLA HKD GAPLCPCRHY+DK AE
Sbjct: 11 ENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPCRHYEDKKAEIS 70
Query: 101 QGFWNCPCVPMRER 114
+WNCPCVPMRER
Sbjct: 71 ATYWNCPCVPMRER 84
>sp|P51386|FTRC_PORPU Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra
purpurea GN=ftrB PE=3 SV=1
Length = 118
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 60/73 (82%)
Query: 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
++E MRKFSE YA+R+ TFFC D SVT+VVI+GLA HKD GAPLCPCRHY+DK AE
Sbjct: 12 NLEAMRKFSETYAKRTGTFFCADNSVTAVVIEGLARHKDKYGAPLCPCRHYEDKKAEISA 71
Query: 102 GFWNCPCVPMRER 114
+WNCPCVPMRER
Sbjct: 72 TYWNCPCVPMRER 84
>sp|O78461|FTRC_GUITH Ferredoxin-thioredoxin reductase, catalytic chain OS=Guillardia
theta GN=ftrB PE=3 SV=1
Length = 102
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 60/79 (75%)
Query: 36 VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDK 95
+E S M+KF+E YA+R++TFFC D S+T +V++GLA HKD GAPLCPCRHYDDK
Sbjct: 2 IESYSDSFVAMKKFAETYAKRTNTFFCNDLSITQIVLEGLAKHKDEYGAPLCPCRHYDDK 61
Query: 96 AAEAQQGFWNCPCVPMRER 114
+ E +WNCPCVPMRER
Sbjct: 62 SEEVASTYWNCPCVPMRER 80
>sp|Q9TM25|FTRC_CYACA Ferredoxin-thioredoxin reductase, catalytic chain OS=Cyanidium
caldarium GN=ftrB PE=3 SV=1
Length = 111
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 60/74 (81%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
K++E + KF+E YA+ S T+FC+D+S+T++VI+GLA HKD GAPLCPCRHY++K E
Sbjct: 6 KNLESLHKFAEAYAKLSRTYFCIDQSITALVIEGLARHKDDYGAPLCPCRHYENKKTEVL 65
Query: 101 QGFWNCPCVPMRER 114
+WNCPCVPMRER
Sbjct: 66 AAYWNCPCVPMRER 79
>sp|P46224|CH60_PYRSA 60 kDa chaperonin, chloroplastic OS=Pyrenomonas salina GN=groL
PE=3 SV=1
Length = 585
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 46 MRKFSEQYARRSD-TFFCVDKSVTSVVIKGLADHKDSLGA 84
MR+FSE Y ++ TFFC + S+T+VVI+GL HK+ GA
Sbjct: 1 MRRFSETYGQKKQITFFCSNLSITAVVIEGLLKHKEEYGA 40
>sp|Q608Y9|NUON_METCA NADH-quinone oxidoreductase subunit N OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=nuoN PE=3
SV=1
Length = 493
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 18 TPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCV 63
TP P PVT A V + ++R F+ +A RS+TF CV
Sbjct: 224 TPDVYQGAPTPVTAFLATVSKASVFALLLRFFTAAHAERSETFLCV 269
>sp|Q3YT10|DAPE_EHRCJ Succinyl-diaminopimelate desuccinylase OS=Ehrlichia canis (strain
Jake) GN=dapE PE=3 SV=2
Length = 380
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 37 EPSEKSVEIMRKFSEQYARRSDTFFCVDK-SVTSVVIKGLADH--KDSLGAPLCPCRHYD 93
P + + I+ K S + +F +TSV + A + D + A L R+ D
Sbjct: 206 NPVDNMISILYKISNTVLDNGNEYFQPSNCEITSVDVGNTATNVIPDKITANL-NIRYND 264
Query: 94 DKAAEAQQGFWNCPCVPMRERYNIFTIVSGALF 126
+E+ N C + E+Y +FT VSG+ F
Sbjct: 265 MHTSESLFNIINNICAEITEKYELFTAVSGSSF 297
>sp|Q72DH6|SYY_DESVH Tyrosine--tRNA ligase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=tyrS PE=3
SV=1
Length = 398
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 79 KDSLGAPLCPCRHYDDKAAEAQQGF 103
K+SL L H +DKAAEAQQGF
Sbjct: 289 KESLAYELTTRYHGEDKAAEAQQGF 313
>sp|P47715|RPOB_MYCGA DNA-directed RNA polymerase subunit beta OS=Mycoplasma gallisepticum
(strain R(low / passage 15 / clone 2)) GN=rpoB PE=3 SV=2
Length = 1390
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 49 FSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLG 83
F ++ A + DT F ++KS T +IK L +H S+G
Sbjct: 1120 FDKKLADQLDTVFGLEKSKTQSLIKNLVEHMKSIG 1154
>sp|Q88BK3|DNAA_PSESM Chromosomal replication initiator protein DnaA OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=dnaA PE=3 SV=1
Length = 511
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 16 ICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYA 54
+ P P++A P PV + EPS S + M S Q A
Sbjct: 117 MAVPAPMVAAPVPVHNVATHDEPSRDSFDPMAGASSQQA 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,376,201
Number of Sequences: 539616
Number of extensions: 1517863
Number of successful extensions: 4428
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4413
Number of HSP's gapped (non-prelim): 19
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)