Query 033097
Match_columns 127
No_of_seqs 109 out of 180
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj7_A Ferredoxin thioredoxin 100.0 4.6E-44 1.6E-48 264.3 5.2 91 34-124 2-92 (117)
2 1n0z_A ZNF265; zinc finger, RN 73.0 1.1 3.7E-05 27.3 0.8 20 99-118 10-34 (45)
3 2k1p_A Zinc finger RAN-binding 66.8 2 6.9E-05 24.3 1.0 12 100-111 3-15 (33)
4 1u2m_A Histone-like protein HL 60.2 9.6 0.00033 26.6 3.8 37 39-75 95-142 (143)
5 2kvo_A Photosystem II reaction 50.6 10 0.00035 27.8 2.7 28 38-65 85-112 (120)
6 2cly_C ATP synthase coupling f 45.8 31 0.001 23.4 4.3 43 42-85 12-54 (77)
7 1cyi_A Cytochrome C6, cytochro 42.9 23 0.0008 21.6 3.2 25 37-61 66-90 (90)
8 2k9i_A Plasmid PRN1, complete 42.4 22 0.00074 20.5 2.8 33 44-78 18-50 (55)
9 2pyq_A Uncharacterized protein 41.2 42 0.0014 24.3 4.6 33 42-76 5-37 (114)
10 1qpz_A PURA, protein (purine n 40.9 34 0.0012 25.8 4.4 42 45-86 30-91 (340)
11 3kjx_A Transcriptional regulat 40.1 29 0.001 26.2 3.9 42 45-86 40-101 (344)
12 3dbi_A Sugar-binding transcrip 35.9 24 0.00082 26.5 2.8 46 44-89 32-99 (338)
13 2lk0_A RNA-binding protein 5; 35.6 10 0.00036 21.1 0.6 12 100-111 2-14 (32)
14 2cpg_A REPA protein, transcrip 35.6 40 0.0014 18.7 3.1 28 44-74 11-38 (45)
15 1jx6_A LUXP protein; protein-l 32.6 46 0.0016 24.8 3.9 44 43-86 15-77 (342)
16 2hsg_A Glucose-resistance amyl 32.2 57 0.002 24.3 4.4 43 44-86 31-93 (332)
17 3jvd_A Transcriptional regulat 31.8 29 0.001 26.3 2.7 45 44-88 35-99 (333)
18 3e3m_A Transcriptional regulat 29.6 32 0.0011 26.2 2.6 43 44-86 41-103 (355)
19 1th8_A Anti-sigma F factor; SP 28.8 81 0.0028 20.6 4.3 45 40-85 13-57 (145)
20 2qv5_A AGR_C_5032P, uncharacte 28.5 1.6E+02 0.0054 23.3 6.6 46 34-79 187-235 (261)
21 1gh9_A 8.3 kDa protein (gene M 27.4 17 0.00057 24.0 0.5 22 86-110 6-28 (71)
22 2l8n_A Transcriptional repress 27.3 33 0.0011 21.5 1.9 20 44-63 38-57 (67)
23 2o20_A Catabolite control prot 27.1 39 0.0013 25.4 2.6 43 44-86 34-96 (332)
24 2ysk_A Hypothetical protein TT 26.7 89 0.003 22.3 4.4 36 38-76 8-47 (145)
25 3h5o_A Transcriptional regulat 26.4 31 0.0011 26.0 2.0 44 44-87 33-96 (339)
26 2hza_A Nickel-responsive regul 26.1 71 0.0024 22.4 3.7 36 44-80 10-45 (133)
27 3ctp_A Periplasmic binding pro 25.9 43 0.0015 25.1 2.7 43 45-87 32-94 (330)
28 1jye_A Lactose operon represso 25.3 44 0.0015 25.4 2.7 43 44-86 32-94 (349)
29 3iz6_M 40S ribosomal protein S 24.7 39 0.0013 25.2 2.2 33 36-68 57-91 (152)
30 3fni_A Putative diflavin flavo 24.0 70 0.0024 22.4 3.4 24 33-56 123-146 (159)
31 3hly_A Flavodoxin-like domain; 23.0 76 0.0026 22.0 3.4 24 33-56 118-141 (161)
32 3bil_A Probable LACI-family tr 22.5 54 0.0019 24.9 2.7 42 45-86 38-99 (348)
33 1uxc_A FRUR (1-57), fructose r 21.0 41 0.0014 21.0 1.4 19 45-63 33-51 (65)
34 2bj7_A Nickel responsive regul 20.9 76 0.0026 22.4 3.0 35 44-79 12-46 (138)
35 1c6r_A Cytochrome C6; electron 20.7 97 0.0033 18.5 3.2 23 37-59 67-89 (89)
36 1f1f_A Cytochrome C6; heme, pr 20.3 1E+02 0.0034 18.4 3.2 22 37-59 68-89 (89)
No 1
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=100.00 E-value=4.6e-44 Score=264.33 Aligned_cols=91 Identities=55% Similarity=1.077 Sum_probs=84.2
Q ss_pred ccCCcCHHHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHhhhCCCCCCCccccchhhhhhCCceeecCccccc
Q 033097 34 AQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRE 113 (127)
Q Consensus 34 ~~~~~se~~~e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~nK~ryG~~~CPCR~~~dkE~ev~d~diICPC~y~~e 113 (127)
.+++++++++++|++|+++||+++||+||||+++|+.|++||++||++||+||||||++.|+|++++.++|||||+|+++
T Consensus 2 ~~~~~~~~~~e~~~~f~ek~ae~~G~~~NpD~evt~~vi~GLa~nk~~yG~~~CPCR~~gdke~d~~~~~iiCPC~~~re 81 (117)
T 1dj7_A 2 SSDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRE 81 (117)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCSSSCCSCHHHHHHHCTTBSSCHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCcCCCChhhhcccCCeecCCcChhh
Confidence 35789999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred ccceeEeeecc
Q 033097 114 RYNIFTIVSGA 124 (127)
Q Consensus 114 ~G~ChCgLf~~ 124 (127)
+|+||||||+.
T Consensus 82 ~G~ChC~Lfvt 92 (117)
T 1dj7_A 82 RKECHCMLFLT 92 (117)
T ss_dssp HCCCTTSSSBC
T ss_pred cCceeEeeeec
Confidence 99999999985
No 2
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=73.02 E-value=1.1 Score=27.26 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=14.5
Q ss_pred hhCCceeec---Cccc--cccccee
Q 033097 99 AQQGFWNCP---CVPM--RERYNIF 118 (127)
Q Consensus 99 v~d~diICP---C~y~--~e~G~Ch 118 (127)
.+++||+|| |..+ ..+..|+
T Consensus 10 ~~~GDW~C~~~~C~~~Nfa~R~~C~ 34 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNFARRTSCD 34 (45)
T ss_dssp SCSSSCBCSSTTTCCBCCSSCSBCS
T ss_pred CCCCCcCCCCCCCCCEEcccccccc
Confidence 468999999 9886 5555553
No 3
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=66.77 E-value=2 Score=24.34 Aligned_cols=12 Identities=25% Similarity=0.913 Sum_probs=9.6
Q ss_pred hCCceeec-Cccc
Q 033097 100 QQGFWNCP-CVPM 111 (127)
Q Consensus 100 ~d~diICP-C~y~ 111 (127)
+..||+|| |..+
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 47899999 8775
No 4
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=60.18 E-value=9.6 Score=26.59 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHhhhcCce----------eccCh-hhHHHHHHHH
Q 033097 39 SEKSVEIMRKFSEQYARRSDTF----------FCVDK-SVTSVVIKGL 75 (127)
Q Consensus 39 se~~~e~~~~f~ekyaek~G~~----------lNPD~-ev~~~Vi~GL 75 (127)
...-.+++.+.++.+|+..||- .+|.- ++|+.|++.|
T Consensus 95 ~~~i~~~i~~ai~~vak~~gy~~Vld~~~vly~~~~~~DIT~~Vi~~L 142 (143)
T 1u2m_A 95 RGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV 142 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEGGGEEEECTTSCBCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEECCceeEeCCCcCchHHHHHHHh
Confidence 3455667888999999999984 35676 8999998765
No 5
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=50.57 E-value=10 Score=27.75 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.5
Q ss_pred cCHHHHHHHHHHHHHHhhhcCceeccCh
Q 033097 38 PSEKSVEIMRKFSEQYARRSDTFFCVDK 65 (127)
Q Consensus 38 ~se~~~e~~~~f~ekyaek~G~~lNPD~ 65 (127)
.++++-+.+.+|+++||+.+|.-|.-.+
T Consensus 85 ~s~~~WdRFMRFMeRYA~~Ngl~f~k~~ 112 (120)
T 2kvo_A 85 NSQPEWDRFMRFMERYGAENGLGFSKSE 112 (120)
T ss_dssp CSSHHHHHHHHHHHHHHHHCCSSSCSTT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCc
Confidence 4899999999999999999998876543
No 6
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=45.81 E-value=31 Score=23.44 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHhhhCCC
Q 033097 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (127)
Q Consensus 42 ~~e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~nK~ryG~~ 85 (127)
=++++|++..|-+. .|=...+.+++-..+-+-|.+-...||..
T Consensus 12 FldKIREYk~Ks~~-~G~lVD~~Pe~~kel~~el~kL~~~YGgg 54 (77)
T 2cly_C 12 FVDKIREYRTKRQT-SGGPVDAGPEYQQDLDRELFKLKQMYGKA 54 (77)
T ss_dssp HHHHHHHHHHHHTC-CSSSSSCCTHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhccc-CCCCCCCCHHHHHHHHHHHHHHHHHHCcc
Confidence 47888888777663 47899999999999999999999999975
No 7
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=42.93 E-value=23 Score=21.61 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.5
Q ss_pred CcCHHHHHHHHHHHHHHhhhcCcee
Q 033097 37 EPSEKSVEIMRKFSEQYARRSDTFF 61 (127)
Q Consensus 37 ~~se~~~e~~~~f~ekyaek~G~~l 61 (127)
..++++++.+..|+.....+.||.|
T Consensus 66 ~ls~~ei~~l~~yl~~~~~~~~W~~ 90 (90)
T 1cyi_A 66 RLSEEEIQAVAEYVFKQATDAAWKY 90 (90)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTCCC-
T ss_pred cCCHHHHHHHHHHHHhcccccCCCC
Confidence 4799999999999999999888865
No 8
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=42.36 E-value=22 Score=20.51 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHh
Q 033097 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADH 78 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~n 78 (127)
+.+++.++.+|++.|. +..+-+..+|.+-|.++
T Consensus 18 ~el~~~l~~~a~~~g~--s~s~~ir~ai~~~l~~~ 50 (55)
T 2k9i_A 18 QEWHDRLMEIAKEKNL--TLSDVCRLAIKEYLDNH 50 (55)
T ss_dssp HHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHh
Confidence 3456668889999996 44444444444444433
No 9
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=41.21 E-value=42 Score=24.31 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHH
Q 033097 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLA 76 (127)
Q Consensus 42 ~~e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa 76 (127)
.-|.|-++++.+-++-| .+||.+++..|..||-
T Consensus 5 ~de~ia~Y~~d~k~k~~--~~~D~~ll~kv~~~lG 37 (114)
T 2pyq_A 5 RDDLIAQYADDLRNKCG--MEPDMALLEKVTKGCG 37 (114)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHhcC
Confidence 34556666666544555 5999999999999983
No 10
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=40.95 E-value=34 Score=25.79 Aligned_cols=42 Identities=10% Similarity=-0.034 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 033097 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (127)
Q Consensus 45 ~~~~f~ekyaek~G~~lNP--------------------D~ev~~~Vi~GLa~nK~ryG~~~ 86 (127)
++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..
T Consensus 30 ~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~ 91 (340)
T 1qpz_A 30 ETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTL 91 (340)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 4555567777777775442 34567789999999888899864
No 11
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=40.09 E-value=29 Score=26.18 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 033097 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (127)
Q Consensus 45 ~~~~f~ekyaek~G~~lNP--------------------D~ev~~~Vi~GLa~nK~ryG~~~ 86 (127)
++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..
T Consensus 40 ~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~ 101 (344)
T 3kjx_A 40 ATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQP 101 (344)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEE
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence 4555677888889998765 23467889999999999999875
No 12
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=35.94 E-value=24 Score=26.53 Aligned_cols=46 Identities=13% Similarity=-0.076 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhcCceecc----------------------ChhhHHHHHHHHHHhHhhhCCCCCCC
Q 033097 44 EIMRKFSEQYARRSDTFFCV----------------------DKSVTSVVIKGLADHKDSLGAPLCPC 89 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNP----------------------D~ev~~~Vi~GLa~nK~ryG~~~CPC 89 (127)
+++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..=-+
T Consensus 32 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 99 (338)
T 3dbi_A 32 QETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA 99 (338)
T ss_dssp ----------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEE
Confidence 34566677778888886553 34577889999999999999865433
No 13
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=35.63 E-value=10 Score=21.10 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=9.1
Q ss_pred hCCceeec-Cccc
Q 033097 100 QQGFWNCP-CVPM 111 (127)
Q Consensus 100 ~d~diICP-C~y~ 111 (127)
|.+||+|| |..+
T Consensus 2 k~gDW~C~~C~~~ 14 (32)
T 2lk0_A 2 KFEDWLCNKCCLN 14 (32)
T ss_dssp CCSEEECTTTCCE
T ss_pred CCCCCCcCcCcCC
Confidence 47899996 7664
No 14
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=35.60 E-value=40 Score=18.67 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhcCceeccChhhHHHHHHH
Q 033097 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKG 74 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~G 74 (127)
+.+.+.++++|++.|. + -.+++...++.
T Consensus 11 ~~l~~~Ld~~a~~~g~--s-rS~~ir~ai~~ 38 (45)
T 2cpg_A 11 ESVLENLEKMAREMGL--S-KSAMISVALEN 38 (45)
T ss_dssp HHHHHHHHHHHHHHTC--C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCc--C-HHHHHHHHHHH
Confidence 3456678899999995 3 34444444443
No 15
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=32.55 E-value=46 Score=24.85 Aligned_cols=44 Identities=7% Similarity=-0.046 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhhcCceec----------------cC---hhhHHHHHHHHHHhHhhhCCCC
Q 033097 43 VEIMRKFSEQYARRSDTFFC----------------VD---KSVTSVVIKGLADHKDSLGAPL 86 (127)
Q Consensus 43 ~e~~~~f~ekyaek~G~~lN----------------PD---~ev~~~Vi~GLa~nK~ryG~~~ 86 (127)
-+++++.+.+.|++.||.-| |+ ..+...+++|+.+--.++|+.+
T Consensus 15 s~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~ 77 (342)
T 1jx6_A 15 FPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINY 77 (342)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeE
Confidence 45778888899999999665 33 3577889999999888999753
No 16
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=32.23 E-value=57 Score=24.32 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 033097 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNP--------------------D~ev~~~Vi~GLa~nK~ryG~~~ 86 (127)
+++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..
T Consensus 31 ~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~ 93 (332)
T 2hsg_A 31 PSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNI 93 (332)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEE
Confidence 34566677778888886542 23467789999999888899864
No 17
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=31.81 E-value=29 Score=26.30 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHhhhCCCCCC
Q 033097 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLCP 88 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNP--------------------D~ev~~~Vi~GLa~nK~ryG~~~CP 88 (127)
+++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..=-
T Consensus 35 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 99 (333)
T 3jvd_A 35 PQTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLV 99 (333)
T ss_dssp -----------------------------CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEE
Confidence 34555567777777876554 3357788999999999999986533
No 18
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=29.58 E-value=32 Score=26.19 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 033097 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNP--------------------D~ev~~~Vi~GLa~nK~ryG~~~ 86 (127)
+++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..
T Consensus 41 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~ 103 (355)
T 3e3m_A 41 SETRERILKVVKDMNYVPDQVAGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQL 103 (355)
T ss_dssp ------------------------------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEE
Confidence 34566677788888887664 22466789999999999999875
No 19
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=28.83 E-value=81 Score=20.63 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHhhhCCC
Q 033097 40 EKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (127)
Q Consensus 40 e~~~e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~nK~ryG~~ 85 (127)
.+.+...+.++..+++..+... .|...+..++.-|+.|--+||..
T Consensus 13 ~~~~~~~r~~~~~~~~~~~~~~-~~~~~l~~il~~l~~Nai~h~~~ 57 (145)
T 1th8_A 13 SENESFARVTVAAFVAQLDPTM-DELTEIKTVVSEAVTNAIIHGYN 57 (145)
T ss_dssp TTHHHHHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHHHHHHTTST
T ss_pred hhhHHHHHHHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHhcC
Confidence 4567888999999998877644 46778889999999999999975
No 20
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=28.49 E-value=1.6e+02 Score=23.27 Aligned_cols=46 Identities=17% Similarity=0.030 Sum_probs=37.9
Q ss_pred ccCCcCHHHHHHHHHHHHHHhhhcCcee---ccChhhHHHHHHHHHHhH
Q 033097 34 AQVEPSEKSVEIMRKFSEQYARRSDTFF---CVDKSVTSVVIKGLADHK 79 (127)
Q Consensus 34 ~~~~~se~~~e~~~~f~ekyaek~G~~l---NPD~ev~~~Vi~GLa~nK 79 (127)
-+.+.+++.+.+..+.+.+.|++.|+.+ +|-++-++.|.+.+..-+
T Consensus 187 LD~~~~~~~I~~qL~~a~~~Ar~~G~AIaIGhp~p~Ti~aL~~~~~~l~ 235 (261)
T 2qv5_A 187 LDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESIAAISKWSREAG 235 (261)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHHSEEEEEEECCHHHHHHHHHHHHHGG
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEeCCCHHHHHHHHHHhhhhh
Confidence 3457889999999999999999999986 688888888877776654
No 21
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=27.38 E-value=17 Score=24.01 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=17.0
Q ss_pred CCCCcccc-chhhhhhCCceeecCcc
Q 033097 86 LCPCRHYD-DKAAEAQQGFWNCPCVP 110 (127)
Q Consensus 86 ~CPCR~~~-dkE~ev~d~diICPC~y 110 (127)
-|||...+ -++- .+.-.|||-.
T Consensus 6 ~C~C~~~~~~~~~---~kT~~C~CG~ 28 (71)
T 1gh9_A 6 RCDCGRALYSREG---AKTRKCVCGR 28 (71)
T ss_dssp EETTSCCEEEETT---CSEEEETTTE
T ss_pred ECCCCCEEEEcCC---CcEEECCCCC
Confidence 38999888 5555 6778999977
No 22
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=27.35 E-value=33 Score=21.54 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhcCceecc
Q 033097 44 EIMRKFSEQYARRSDTFFCV 63 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNP 63 (127)
+++++.+.+.|++.||..|+
T Consensus 38 ~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 38 QATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHHhCCCccH
Confidence 34556677889999998664
No 23
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=27.14 E-value=39 Score=25.35 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 033097 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNP--------------------D~ev~~~Vi~GLa~nK~ryG~~~ 86 (127)
+++++.+.+.|++.||.-|+ +..+...++.|+.+--.++|+..
T Consensus 34 ~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~ 96 (332)
T 2o20_A 34 EKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNM 96 (332)
T ss_dssp ----------------------------CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEE
Confidence 34555566666666665442 24467789999999888999865
No 24
>2ysk_A Hypothetical protein TTHA1432; conserved hypothetical, NPPSFA, national project on protein structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=26.74 E-value=89 Score=22.31 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=27.7
Q ss_pred cCHHHHHHHHHHHHHHhhhcCceeccChh----hHHHHHHHHH
Q 033097 38 PSEKSVEIMRKFSEQYARRSDTFFCVDKS----VTSVVIKGLA 76 (127)
Q Consensus 38 ~se~~~e~~~~f~ekyaek~G~~lNPD~e----v~~~Vi~GLa 76 (127)
.++...++...|++++.+..|| ||++ ++.+|+..|.
T Consensus 8 ~~~~~~~~~~~fl~~V~~~~~~---~~~~~A~~~~raVL~tLr 47 (145)
T 2ysk_A 8 VFDRTLHKTHAWLKAIMEELGT---EDRHKAYLALRAVLHALR 47 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHH
Confidence 5788899999999999999998 5654 4555555544
No 25
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=26.42 E-value=31 Score=25.95 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHhhhCCCCC
Q 033097 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLC 87 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNP--------------------D~ev~~~Vi~GLa~nK~ryG~~~C 87 (127)
+++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..=
T Consensus 33 ~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 96 (339)
T 3h5o_A 33 EQLREKVMQAVDALAYVPSRSASTLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQML 96 (339)
T ss_dssp ------------------------------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 34555667777888887663 223667899999999899998753
No 26
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=26.11 E-value=71 Score=22.41 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHh
Q 033097 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKD 80 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~nK~ 80 (127)
+.+.+++++++++.|| -|..+-+-+++.+.|.+++.
T Consensus 10 ~~ll~~lD~~v~~~~y-~sRSe~Ir~air~~l~~~~~ 45 (133)
T 2hza_A 10 DDLLETLDSLSQRRGY-NNRSEAIRDILRSALAQEAT 45 (133)
T ss_dssp HHHHHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhh
Confidence 4567778999999997 45555555556667766653
No 27
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=25.87 E-value=43 Score=25.08 Aligned_cols=43 Identities=7% Similarity=-0.031 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHhhhCCCCC
Q 033097 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLC 87 (127)
Q Consensus 45 ~~~~f~ekyaek~G~~lNP--------------------D~ev~~~Vi~GLa~nK~ryG~~~C 87 (127)
++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..=
T Consensus 32 ~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~ 94 (330)
T 3ctp_A 32 DAREKIQKVVDELNYTPNALARAMFTKNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLF 94 (330)
T ss_dssp ----------------------------CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHhhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 3455556666666665442 234677899999988888998653
No 28
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=25.35 E-value=44 Score=25.39 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhcCceecc------------------C--hhhHHHHHHHHHHhHhhhCCCC
Q 033097 44 EIMRKFSEQYARRSDTFFCV------------------D--KSVTSVVIKGLADHKDSLGAPL 86 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNP------------------D--~ev~~~Vi~GLa~nK~ryG~~~ 86 (127)
+++++.+.+.|++.||.-|+ | ..+...+++|+.+--.++|+..
T Consensus 32 ~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~ 94 (349)
T 1jye_A 32 AKTREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGASV 94 (349)
T ss_dssp ------------------------------CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEE
Confidence 34555566677777776553 2 2466789999998888999864
No 29
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.66 E-value=39 Score=25.18 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=24.3
Q ss_pred CCcCHHHHHHHHHHHHHHhhh--cCceeccChhhH
Q 033097 36 VEPSEKSVEIMRKFSEQYARR--SDTFFCVDKSVT 68 (127)
Q Consensus 36 ~~~se~~~e~~~~f~ekyaek--~G~~lNPD~ev~ 68 (127)
.+.++++++++.+.++..++- -.|+||-.+++.
T Consensus 57 g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~kD~~ 91 (152)
T 3iz6_M 57 GELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYK 91 (152)
T ss_dssp TTSCHHHHHHHHHHHHSCSSCCCCCCSCSCCCSCC
T ss_pred CcCCHHHHHHHHHHHHhhcccCcchhhhhhhcccC
Confidence 457999999999998764322 368999876654
No 30
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=24.03 E-value=70 Score=22.38 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=19.2
Q ss_pred eccCCcCHHHHHHHHHHHHHHhhh
Q 033097 33 RAQVEPSEKSVEIMRKFSEQYARR 56 (127)
Q Consensus 33 ~~~~~~se~~~e~~~~f~ekyaek 56 (127)
..+..|.++++++.++|.++++++
T Consensus 123 ~~~~~P~~~dl~~~~~~g~~la~~ 146 (159)
T 3fni_A 123 RIKQTPTENTYKLCEEAGTDLGQW 146 (159)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHH
Confidence 345668899999999999888765
No 31
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.02 E-value=76 Score=22.04 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=19.1
Q ss_pred eccCCcCHHHHHHHHHHHHHHhhh
Q 033097 33 RAQVEPSEKSVEIMRKFSEQYARR 56 (127)
Q Consensus 33 ~~~~~~se~~~e~~~~f~ekyaek 56 (127)
..+..|.+++++++++|.++++++
T Consensus 118 ~~~~~P~~~dl~~~~~~g~~la~~ 141 (161)
T 3hly_A 118 RVKDQPTEAIYQQCEESGTDLGQW 141 (161)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHH
Confidence 345568899999999999888865
No 32
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.49 E-value=54 Score=24.93 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHhhhCCCC
Q 033097 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (127)
Q Consensus 45 ~~~~f~ekyaek~G~~lNP--------------------D~ev~~~Vi~GLa~nK~ryG~~~ 86 (127)
++++.+.+.|++.||.-|+ +..+...+++|+.+--.++|+..
T Consensus 38 ~tr~rV~~aa~~lgY~pn~~ar~l~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~ 99 (348)
T 3bil_A 38 STRERIQQLASDLGYRANAQARALRSSRSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLAT 99 (348)
T ss_dssp ------------------------------CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEE
Confidence 4455566666666665443 23466789999998888899875
No 33
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=21.03 E-value=41 Score=20.96 Aligned_cols=19 Identities=5% Similarity=-0.197 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhhcCceecc
Q 033097 45 IMRKFSEQYARRSDTFFCV 63 (127)
Q Consensus 45 ~~~~f~ekyaek~G~~lNP 63 (127)
++++.+.+.|++.||.-|.
T Consensus 33 et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 33 KTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHHHHHHHHHHHTCCCC-
T ss_pred HHHHHHHHHHHHhCCCccH
Confidence 4455577778899998665
No 34
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=20.94 E-value=76 Score=22.39 Aligned_cols=35 Identities=6% Similarity=0.003 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhH
Q 033097 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHK 79 (127)
Q Consensus 44 e~~~~f~ekyaek~G~~lNPD~ev~~~Vi~GLa~nK 79 (127)
+.+.+++++++++.|| -|..+-+-+++.+.|.+++
T Consensus 12 ~~l~~~ld~~v~~~~y-~sRSe~Ir~air~~l~~~~ 46 (138)
T 2bj7_A 12 SKLLEKFDQIIEEIGY-ENRSEAIRDLIRDFIIRHE 46 (138)
T ss_dssp HHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhh
Confidence 4567788899999997 3444444444555666654
No 35
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=20.70 E-value=97 Score=18.54 Aligned_cols=23 Identities=4% Similarity=0.056 Sum_probs=18.6
Q ss_pred CcCHHHHHHHHHHHHHHhhhcCc
Q 033097 37 EPSEKSVEIMRKFSEQYARRSDT 59 (127)
Q Consensus 37 ~~se~~~e~~~~f~ekyaek~G~ 59 (127)
..++++++.+..|+....+..||
T Consensus 67 ~ls~~ei~~l~~yl~~~~~~~~W 89 (89)
T 1c6r_A 67 TLDDDEIAAVAAYVYDQASGDKW 89 (89)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHHccCCCC
Confidence 47899999999999888776555
No 36
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=20.28 E-value=1e+02 Score=18.40 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=17.9
Q ss_pred CcCHHHHHHHHHHHHHHhhhcCc
Q 033097 37 EPSEKSVEIMRKFSEQYARRSDT 59 (127)
Q Consensus 37 ~~se~~~e~~~~f~ekyaek~G~ 59 (127)
..++++++.+..|+....++ ||
T Consensus 68 ~ls~~ei~~l~~yl~~~~~~-~w 89 (89)
T 1f1f_A 68 RLSPLQIEDVAAYVVDQAEK-GW 89 (89)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-TC
T ss_pred CCCHHHHHHHHHHHHHHhhc-CC
Confidence 37899999999999888764 55
Done!