Query 033098
Match_columns 127
No_of_seqs 129 out of 1010
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 1.3E-27 2.7E-32 144.8 11.0 106 12-120 42-149 (150)
2 cd02985 TRX_CDSP32 TRX family, 99.9 2.5E-26 5.4E-31 134.5 12.7 98 18-117 1-101 (103)
3 KOG0907 Thioredoxin [Posttrans 99.9 4.8E-26 1E-30 133.0 12.1 102 17-118 4-105 (106)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 5.3E-26 1.2E-30 133.8 9.9 98 19-118 1-110 (114)
5 PF00085 Thioredoxin: Thioredo 99.9 3.6E-25 7.7E-30 129.2 13.2 100 15-118 2-103 (103)
6 cd02948 TRX_NDPK TRX domain, T 99.9 2.5E-25 5.4E-30 130.1 12.2 98 16-118 3-102 (102)
7 COG3118 Thioredoxin domain-con 99.9 7.7E-26 1.7E-30 150.1 10.5 113 7-121 18-132 (304)
8 PHA02278 thioredoxin-like prot 99.9 3.3E-25 7.1E-30 129.3 11.8 93 18-114 2-100 (103)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.1E-24 2.3E-29 129.1 11.4 103 10-114 7-112 (113)
10 PLN00410 U5 snRNP protein, DIM 99.9 1.6E-24 3.5E-29 132.0 12.1 107 14-122 5-123 (142)
11 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.1E-24 2.3E-29 127.8 10.6 99 13-115 2-104 (104)
12 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.1E-24 2.4E-29 127.1 10.3 97 13-114 2-100 (101)
13 cd02956 ybbN ybbN protein fami 99.9 2.5E-24 5.4E-29 124.5 11.1 93 22-116 2-96 (96)
14 cd03065 PDI_b_Calsequestrin_N 99.9 5.7E-24 1.2E-28 126.8 12.5 103 12-119 9-119 (120)
15 cd02999 PDI_a_ERp44_like PDIa 99.9 1.7E-24 3.6E-29 126.1 9.9 92 21-115 7-100 (100)
16 cd02989 Phd_like_TxnDC9 Phosdu 99.9 5.7E-24 1.2E-28 126.3 12.0 92 11-106 3-94 (113)
17 PRK09381 trxA thioredoxin; Pro 99.9 1.1E-23 2.3E-28 124.5 13.0 104 12-119 3-108 (109)
18 PRK10996 thioredoxin 2; Provis 99.9 1.1E-23 2.4E-28 129.3 13.0 103 12-119 35-139 (139)
19 cd02963 TRX_DnaJ TRX domain, D 99.9 4E-24 8.6E-29 126.7 10.4 99 19-118 10-111 (111)
20 cd02996 PDI_a_ERp44 PDIa famil 99.9 4.8E-24 1E-28 125.8 10.7 98 13-115 2-108 (108)
21 PTZ00051 thioredoxin; Provisio 99.9 1.3E-23 2.9E-28 121.8 12.0 96 14-113 2-97 (98)
22 cd02984 TRX_PICOT TRX domain, 99.9 1.1E-23 2.4E-28 121.9 11.3 95 19-115 1-96 (97)
23 cd02957 Phd_like Phosducin (Ph 99.9 3.3E-23 7.2E-28 123.2 12.6 93 11-106 3-95 (113)
24 cd02986 DLP Dim1 family, Dim1- 99.9 3.6E-23 7.8E-28 121.1 11.9 99 20-120 2-112 (114)
25 cd02994 PDI_a_TMX PDIa family, 99.9 4.2E-23 9.2E-28 120.4 11.2 97 13-117 2-101 (101)
26 KOG0908 Thioredoxin-like prote 99.9 3E-23 6.5E-28 134.4 10.5 109 13-123 2-110 (288)
27 cd02987 Phd_like_Phd Phosducin 99.9 1.1E-22 2.4E-27 129.0 12.7 97 8-106 58-154 (175)
28 cd02950 TxlA TRX-like protein 99.9 1.1E-22 2.5E-27 125.2 12.2 101 21-125 11-116 (142)
29 cd02962 TMX2 TMX2 family; comp 99.9 1.3E-22 2.9E-27 125.6 11.9 92 11-105 27-126 (152)
30 cd03002 PDI_a_MPD1_like PDI fa 99.9 9.8E-23 2.1E-27 120.2 10.7 98 14-115 2-108 (109)
31 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.3E-22 2.7E-27 118.4 10.9 96 14-115 2-102 (102)
32 PTZ00443 Thioredoxin domain-co 99.9 2.8E-22 6E-27 131.1 13.3 111 11-122 29-142 (224)
33 TIGR01068 thioredoxin thioredo 99.9 3.3E-22 7.1E-27 116.1 12.1 98 19-119 2-101 (101)
34 cd02965 HyaE HyaE family; HyaE 99.9 2.2E-22 4.7E-27 117.8 11.0 96 12-112 10-109 (111)
35 cd02997 PDI_a_PDIR PDIa family 99.9 6.7E-22 1.5E-26 115.6 11.5 97 14-115 2-104 (104)
36 cd03001 PDI_a_P5 PDIa family, 99.9 1.1E-21 2.3E-26 114.6 11.4 98 14-115 2-102 (103)
37 TIGR01126 pdi_dom protein disu 99.9 1.2E-21 2.6E-26 114.1 10.4 96 19-118 2-101 (102)
38 TIGR01295 PedC_BrcD bacterioci 99.9 2.4E-21 5.3E-26 116.3 12.0 100 11-116 5-121 (122)
39 cd02949 TRX_NTR TRX domain, no 99.9 4.2E-21 9.1E-26 111.2 11.4 84 33-116 12-97 (97)
40 cd02975 PfPDO_like_N Pyrococcu 99.9 4.6E-21 1E-25 113.9 11.7 89 32-120 20-111 (113)
41 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 2.1E-21 4.5E-26 113.5 9.9 98 13-115 1-104 (104)
42 cd02953 DsbDgamma DsbD gamma f 99.9 1.2E-21 2.5E-26 114.8 8.5 92 21-116 2-104 (104)
43 cd02993 PDI_a_APS_reductase PD 99.9 4.3E-21 9.4E-26 113.4 10.7 101 13-115 2-109 (109)
44 cd02988 Phd_like_VIAF Phosduci 99.9 1.1E-20 2.4E-25 121.4 12.7 105 7-116 77-189 (192)
45 cd02998 PDI_a_ERp38 PDIa famil 99.9 4.5E-21 9.8E-26 112.2 9.4 98 14-115 2-105 (105)
46 PTZ00062 glutaredoxin; Provisi 99.9 8.4E-21 1.8E-25 122.4 10.9 94 18-122 4-97 (204)
47 cd03000 PDI_a_TMX3 PDIa family 99.9 1.2E-20 2.7E-25 110.5 10.2 85 33-118 14-103 (104)
48 cd02961 PDI_a_family Protein D 99.9 1E-20 2.2E-25 109.5 9.2 93 19-115 4-101 (101)
49 KOG0190 Protein disulfide isom 99.8 6.2E-21 1.3E-25 135.3 9.6 113 9-126 22-139 (493)
50 cd02951 SoxW SoxW family; SoxW 99.8 4.1E-20 8.9E-25 111.6 11.1 95 27-121 6-121 (125)
51 cd02947 TRX_family TRX family; 99.8 6.3E-20 1.4E-24 104.4 11.2 90 22-115 2-92 (93)
52 cd02952 TRP14_like Human TRX-r 99.8 1.1E-19 2.5E-24 108.1 10.0 98 16-115 5-118 (119)
53 PTZ00102 disulphide isomerase; 99.8 3.2E-19 6.8E-24 128.6 12.5 105 12-122 32-141 (477)
54 TIGR01130 ER_PDI_fam protein d 99.8 2.9E-19 6.3E-24 128.1 12.2 105 13-122 2-112 (462)
55 cd02992 PDI_a_QSOX PDIa family 99.8 1.6E-19 3.5E-24 107.4 7.9 82 13-98 2-89 (114)
56 PLN02309 5'-adenylylsulfate re 99.8 1E-18 2.2E-23 124.3 12.1 108 9-118 342-456 (457)
57 TIGR00424 APS_reduc 5'-adenyly 99.8 1.3E-18 2.7E-23 123.9 11.7 108 9-118 348-462 (463)
58 PRK00293 dipZ thiol:disulfide 99.8 1.4E-18 3E-23 127.4 11.5 107 13-119 453-570 (571)
59 PTZ00102 disulphide isomerase; 99.8 1.3E-18 2.9E-23 125.4 11.1 107 11-121 356-467 (477)
60 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2.3E-18 5E-23 101.8 9.3 98 13-118 2-115 (116)
61 cd02959 ERp19 Endoplasmic reti 99.8 1E-18 2.2E-23 104.3 6.5 101 21-121 6-115 (117)
62 TIGR00411 redox_disulf_1 small 99.8 1.8E-17 3.9E-22 93.0 10.0 79 37-119 2-82 (82)
63 cd02982 PDI_b'_family Protein 99.7 8.9E-18 1.9E-22 98.0 7.9 86 33-118 11-102 (103)
64 TIGR02187 GlrX_arch Glutaredox 99.7 8.2E-17 1.8E-21 105.5 12.3 88 33-120 18-112 (215)
65 PRK15412 thiol:disulfide inter 99.7 1.9E-16 4E-21 101.6 11.3 88 33-122 67-179 (185)
66 PF13098 Thioredoxin_2: Thiore 99.7 6.2E-17 1.3E-21 95.8 8.0 83 33-115 4-112 (112)
67 TIGR00385 dsbE periplasmic pro 99.7 2.3E-16 4.9E-21 100.2 10.5 86 33-120 62-172 (173)
68 TIGR02740 TraF-like TraF-like 99.7 5.1E-16 1.1E-20 104.7 12.5 89 32-121 164-266 (271)
69 TIGR02738 TrbB type-F conjugat 99.7 2E-16 4.3E-21 98.3 9.3 86 33-119 49-153 (153)
70 KOG0190 Protein disulfide isom 99.7 4.4E-17 9.6E-22 115.9 7.2 102 12-120 366-474 (493)
71 TIGR02187 GlrX_arch Glutaredox 99.7 4.5E-16 9.8E-21 102.0 11.5 82 33-117 132-214 (215)
72 cd03010 TlpA_like_DsbE TlpA-li 99.7 2.8E-16 6E-21 95.0 8.7 82 28-110 19-125 (127)
73 PRK14018 trifunctional thiored 99.7 4.9E-16 1.1E-20 112.1 11.3 86 33-118 55-172 (521)
74 cd02955 SSP411 TRX domain, SSP 99.7 6.7E-16 1.5E-20 92.7 10.1 92 27-118 8-118 (124)
75 TIGR01130 ER_PDI_fam protein d 99.7 2.6E-16 5.6E-21 112.9 9.7 104 11-120 345-455 (462)
76 PHA02125 thioredoxin-like prot 99.7 6.6E-16 1.4E-20 85.3 9.0 69 38-114 2-72 (75)
77 cd03008 TryX_like_RdCVF Trypar 99.7 4.6E-16 1E-20 95.8 8.4 72 31-102 22-128 (146)
78 KOG4277 Uncharacterized conser 99.7 3.4E-16 7.4E-21 104.8 7.5 90 33-122 42-135 (468)
79 PF13905 Thioredoxin_8: Thiore 99.7 9.3E-16 2E-20 88.3 7.8 66 34-99 1-95 (95)
80 cd02973 TRX_GRX_like Thioredox 99.6 1.8E-15 3.9E-20 81.7 7.9 62 37-100 2-63 (67)
81 TIGR00412 redox_disulf_2 small 99.6 4.8E-15 1E-19 82.0 8.9 71 38-115 2-75 (76)
82 cd02958 UAS UAS family; UAS is 99.6 1.3E-14 2.7E-19 86.3 11.3 100 21-120 4-112 (114)
83 PRK03147 thiol-disulfide oxido 99.6 7.5E-15 1.6E-19 93.0 10.9 86 33-118 60-171 (173)
84 cd03009 TryX_like_TryX_NRX Try 99.6 2.9E-15 6.2E-20 91.0 7.8 70 33-102 17-115 (131)
85 cd02964 TryX_like_family Trypa 99.6 2.5E-15 5.5E-20 91.5 7.6 76 27-102 10-115 (132)
86 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 1.6E-14 3.5E-19 82.1 10.2 75 33-111 11-86 (89)
87 KOG0912 Thiol-disulfide isomer 99.6 2.6E-15 5.6E-20 100.4 7.1 97 20-120 3-107 (375)
88 PLN02919 haloacid dehalogenase 99.6 1.2E-14 2.6E-19 112.9 11.6 88 33-120 419-537 (1057)
89 cd02966 TlpA_like_family TlpA- 99.6 1.3E-14 2.8E-19 85.4 8.4 73 33-105 18-116 (116)
90 PRK13728 conjugal transfer pro 99.6 4E-14 8.7E-19 89.7 10.8 83 38-121 73-173 (181)
91 PTZ00056 glutathione peroxidas 99.6 1.7E-14 3.7E-19 93.4 9.3 94 28-121 33-180 (199)
92 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 4.2E-14 9.1E-19 84.9 9.3 81 33-114 19-121 (123)
93 cd03012 TlpA_like_DipZ_like Tl 99.6 4.3E-14 9.4E-19 85.4 8.9 74 33-106 22-125 (126)
94 PRK11509 hydrogenase-1 operon 99.6 2.4E-13 5.2E-18 82.0 11.8 105 13-122 18-127 (132)
95 TIGR02661 MauD methylamine deh 99.5 1.2E-13 2.5E-18 88.9 10.3 86 33-119 73-179 (189)
96 KOG0191 Thioredoxin/protein di 99.5 6E-14 1.3E-18 99.0 9.7 100 20-122 36-137 (383)
97 PF08534 Redoxin: Redoxin; In 99.5 1.7E-13 3.8E-18 84.6 9.8 75 32-106 26-134 (146)
98 cd02967 mauD Methylamine utili 99.5 1.4E-13 3E-18 81.6 8.6 70 33-102 20-111 (114)
99 PF02114 Phosducin: Phosducin; 99.5 7.1E-14 1.5E-18 93.8 8.1 108 9-118 122-237 (265)
100 COG4232 Thiol:disulfide interc 99.5 7.2E-14 1.6E-18 100.7 8.4 103 15-119 457-568 (569)
101 TIGR01626 ytfJ_HI0045 conserve 99.5 2.8E-13 6.1E-18 86.3 9.8 87 27-115 52-176 (184)
102 PLN02399 phospholipid hydroper 99.5 5E-13 1.1E-17 88.3 9.8 90 31-120 96-235 (236)
103 cd02960 AGR Anterior Gradient 99.5 1.8E-13 3.9E-18 82.4 6.9 85 21-106 10-99 (130)
104 smart00594 UAS UAS domain. 99.5 1.5E-12 3.3E-17 78.3 10.1 97 19-115 12-121 (122)
105 TIGR02540 gpx7 putative glutat 99.4 5.9E-13 1.3E-17 83.0 7.5 90 30-119 18-153 (153)
106 KOG0191 Thioredoxin/protein di 99.4 1.1E-12 2.3E-17 92.7 9.4 104 14-121 146-254 (383)
107 PF13899 Thioredoxin_7: Thiore 99.4 4.5E-13 9.7E-18 75.2 6.0 74 21-95 4-81 (82)
108 cd02969 PRX_like1 Peroxiredoxi 99.4 3.3E-12 7.1E-17 80.9 10.6 93 33-125 24-158 (171)
109 PLN02412 probable glutathione 99.4 2.6E-12 5.7E-17 81.2 10.1 90 32-121 27-166 (167)
110 KOG1731 FAD-dependent sulfhydr 99.4 3.1E-13 6.6E-18 97.0 4.4 106 10-119 37-153 (606)
111 PF14595 Thioredoxin_9: Thiore 99.4 3.5E-12 7.6E-17 77.2 8.2 84 33-117 40-127 (129)
112 cd00340 GSH_Peroxidase Glutath 99.4 2.2E-12 4.8E-17 80.3 7.3 82 32-114 20-151 (152)
113 KOG0914 Thioredoxin-like prote 99.4 8.2E-13 1.8E-17 84.7 4.7 96 9-106 121-224 (265)
114 TIGR02196 GlrX_YruB Glutaredox 99.3 1.4E-11 3.1E-16 67.1 7.9 69 38-116 2-74 (74)
115 PF06110 DUF953: Eukaryotic pr 99.3 2E-11 4.3E-16 72.5 8.6 100 17-116 2-118 (119)
116 PTZ00256 glutathione peroxidas 99.3 1.2E-11 2.6E-16 79.3 8.0 93 28-120 34-182 (183)
117 KOG1672 ATP binding protein [P 99.3 2.7E-11 5.8E-16 76.5 8.8 97 6-106 60-156 (211)
118 KOG3414 Component of the U4/U6 99.3 1E-10 2.2E-15 68.9 10.2 106 15-122 6-123 (142)
119 cd03017 PRX_BCP Peroxiredoxin 99.3 6.2E-11 1.4E-15 72.5 8.9 82 33-114 22-138 (140)
120 PF13728 TraF: F plasmid trans 99.3 1.4E-10 3E-15 76.0 10.9 81 33-114 119-213 (215)
121 KOG2501 Thioredoxin, nucleored 99.3 2.6E-11 5.7E-16 74.6 6.4 70 33-102 32-131 (157)
122 PF13192 Thioredoxin_3: Thiore 99.2 1.5E-10 3.3E-15 63.9 8.9 73 40-116 4-76 (76)
123 PF11009 DUF2847: Protein of u 99.2 4E-10 8.6E-15 65.3 10.2 95 15-111 2-104 (105)
124 COG0526 TrxA Thiol-disulfide i 99.2 7.6E-11 1.6E-15 69.0 7.5 72 34-105 32-107 (127)
125 cd03014 PRX_Atyp2cys Peroxired 99.2 1.4E-10 3.1E-15 71.3 8.9 84 32-115 24-141 (143)
126 PRK00522 tpx lipid hydroperoxi 99.2 2.1E-10 4.6E-15 72.5 9.3 73 32-104 42-148 (167)
127 cd03015 PRX_Typ2cys Peroxiredo 99.2 4.3E-10 9.4E-15 71.4 10.7 87 33-119 28-157 (173)
128 TIGR02200 GlrX_actino Glutared 99.2 1.4E-10 3E-15 63.9 7.3 70 38-116 2-76 (77)
129 COG2143 Thioredoxin-related pr 99.2 7.5E-10 1.6E-14 67.9 10.9 87 32-118 40-148 (182)
130 PF00578 AhpC-TSA: AhpC/TSA fa 99.2 2E-10 4.4E-15 68.8 8.0 70 32-101 23-123 (124)
131 TIGR02739 TraF type-F conjugat 99.2 1.1E-09 2.4E-14 73.1 11.6 88 33-121 149-250 (256)
132 PRK10606 btuE putative glutath 99.1 3.8E-10 8.3E-15 72.2 8.2 44 30-74 21-66 (183)
133 PF02966 DIM1: Mitosis protein 99.1 7.4E-09 1.6E-13 61.8 12.6 105 15-122 3-120 (133)
134 TIGR03137 AhpC peroxiredoxin. 99.1 1.1E-09 2.4E-14 70.4 9.9 85 33-117 30-154 (187)
135 PF03190 Thioredox_DsbH: Prote 99.1 7.5E-10 1.6E-14 69.1 7.8 80 25-104 28-120 (163)
136 cd01659 TRX_superfamily Thiore 99.1 7.6E-10 1.7E-14 58.0 6.7 60 38-97 1-63 (69)
137 PRK09437 bcp thioredoxin-depen 99.1 2.6E-09 5.6E-14 66.5 10.1 75 32-106 28-139 (154)
138 KOG3425 Uncharacterized conser 99.1 7.5E-10 1.6E-14 64.8 6.8 77 19-96 11-104 (128)
139 PRK10877 protein disulfide iso 99.1 1.2E-09 2.7E-14 72.4 8.7 80 33-118 106-230 (232)
140 PRK13703 conjugal pilus assemb 99.1 5.1E-09 1.1E-13 69.7 11.5 88 33-121 142-243 (248)
141 PRK11200 grxA glutaredoxin 1; 99.1 2.7E-09 5.8E-14 60.1 8.7 77 37-120 2-84 (85)
142 cd02991 UAS_ETEA UAS family, E 99.1 1.1E-08 2.3E-13 61.0 11.4 98 21-120 4-114 (116)
143 cd03018 PRX_AhpE_like Peroxire 99.0 3.1E-09 6.7E-14 65.7 9.0 75 33-107 26-134 (149)
144 cd02971 PRX_family Peroxiredox 99.0 3.6E-09 7.8E-14 64.6 8.5 75 33-107 21-130 (140)
145 KOG0913 Thiol-disulfide isomer 99.0 1.7E-10 3.7E-15 74.9 2.4 102 9-118 21-125 (248)
146 cd02970 PRX_like2 Peroxiredoxi 99.0 4E-09 8.7E-14 65.0 8.6 43 34-76 23-68 (149)
147 PRK10382 alkyl hydroperoxide r 99.0 1.1E-08 2.3E-13 65.8 10.2 86 33-118 30-155 (187)
148 cd02968 SCO SCO (an acronym fo 99.0 4.4E-09 9.6E-14 64.4 7.3 42 33-74 21-68 (142)
149 PRK13190 putative peroxiredoxi 99.0 1.2E-08 2.7E-13 66.3 9.6 88 33-120 26-155 (202)
150 KOG0911 Glutaredoxin-related p 99.0 8E-10 1.7E-14 71.4 3.8 103 14-122 3-105 (227)
151 TIGR02180 GRX_euk Glutaredoxin 98.9 4.7E-09 1E-13 58.7 6.2 60 38-100 1-65 (84)
152 PRK15000 peroxidase; Provision 98.9 2.6E-08 5.6E-13 64.8 10.4 86 33-118 33-161 (200)
153 TIGR02183 GRXA Glutaredoxin, G 98.9 1.8E-08 3.8E-13 56.9 8.2 75 38-119 2-82 (86)
154 KOG3171 Conserved phosducin-li 98.9 6.2E-09 1.3E-13 67.0 6.9 114 3-118 129-250 (273)
155 cd02976 NrdH NrdH-redoxin (Nrd 98.9 1.6E-08 3.6E-13 54.7 7.4 68 38-115 2-73 (73)
156 KOG3170 Conserved phosducin-li 98.9 2.5E-08 5.5E-13 63.6 8.3 109 5-118 84-200 (240)
157 TIGR03143 AhpF_homolog putativ 98.9 4.4E-08 9.6E-13 72.5 10.8 77 35-115 476-554 (555)
158 PF13848 Thioredoxin_6: Thiore 98.8 3.1E-07 6.7E-12 58.5 12.7 106 7-117 72-184 (184)
159 cd03020 DsbA_DsbC_DsbG DsbA fa 98.8 2.9E-08 6.4E-13 64.3 7.5 76 33-115 76-197 (197)
160 PRK11657 dsbG disulfide isomer 98.8 5.8E-08 1.3E-12 65.2 8.9 82 33-116 116-249 (251)
161 cd03023 DsbA_Com1_like DsbA fa 98.8 1.2E-07 2.6E-12 58.6 9.4 40 33-72 4-43 (154)
162 cd03016 PRX_1cys Peroxiredoxin 98.8 2.2E-07 4.7E-12 60.6 10.5 87 33-119 23-154 (203)
163 PF00462 Glutaredoxin: Glutare 98.8 8.1E-08 1.8E-12 50.4 7.0 55 38-99 1-59 (60)
164 PRK13189 peroxiredoxin; Provis 98.8 2E-07 4.4E-12 61.5 10.1 86 33-118 34-162 (222)
165 PF01216 Calsequestrin: Calseq 98.7 5.2E-07 1.1E-11 62.2 12.0 104 12-120 34-145 (383)
166 PRK10329 glutaredoxin-like pro 98.7 2.3E-07 5E-12 51.8 8.5 73 38-120 3-78 (81)
167 PRK13599 putative peroxiredoxi 98.7 3.1E-07 6.8E-12 60.3 10.4 86 33-118 27-155 (215)
168 PRK15317 alkyl hydroperoxide r 98.7 2.2E-07 4.7E-12 68.3 10.7 80 34-117 116-196 (517)
169 KOG2603 Oligosaccharyltransfer 98.7 1.4E-07 3.1E-12 63.9 8.7 110 9-120 37-167 (331)
170 PRK13191 putative peroxiredoxi 98.7 3.5E-07 7.6E-12 60.1 10.3 86 33-118 32-160 (215)
171 PTZ00137 2-Cys peroxiredoxin; 98.7 4.2E-07 9.2E-12 61.2 10.7 86 33-118 97-224 (261)
172 TIGR02194 GlrX_NrdH Glutaredox 98.7 1.1E-07 2.3E-12 51.9 6.5 67 39-114 2-71 (72)
173 PTZ00253 tryparedoxin peroxida 98.7 3E-07 6.5E-12 59.7 9.3 87 32-118 34-163 (199)
174 PF05768 DUF836: Glutaredoxin- 98.7 3.6E-07 7.8E-12 51.0 8.1 77 37-116 1-81 (81)
175 TIGR02190 GlrX-dom Glutaredoxi 98.7 3.4E-07 7.5E-12 50.8 7.8 61 33-100 5-68 (79)
176 cd03019 DsbA_DsbA DsbA family, 98.6 1.2E-06 2.7E-11 55.5 9.6 39 33-71 14-53 (178)
177 TIGR02189 GlrX-like_plant Glut 98.6 1.7E-07 3.8E-12 54.2 5.1 57 38-101 10-73 (99)
178 TIGR03140 AhpF alkyl hydropero 98.6 1.4E-06 3E-11 64.1 10.7 81 34-118 117-198 (515)
179 PF13462 Thioredoxin_4: Thiore 98.5 2E-06 4.3E-11 53.7 9.9 80 33-117 11-162 (162)
180 cd03419 GRX_GRXh_1_2_like Glut 98.5 5.2E-07 1.1E-11 50.1 6.5 58 38-100 2-64 (82)
181 PRK10954 periplasmic protein d 98.5 1.7E-06 3.6E-11 56.6 9.5 40 33-72 36-79 (207)
182 PHA03050 glutaredoxin; Provisi 98.5 6.2E-07 1.3E-11 52.7 6.6 60 38-101 15-81 (108)
183 cd03029 GRX_hybridPRX5 Glutare 98.5 1.6E-06 3.5E-11 47.1 7.8 66 38-115 3-71 (72)
184 TIGR03143 AhpF_homolog putativ 98.5 5.1E-06 1.1E-10 61.7 11.4 101 21-123 355-458 (555)
185 cd02066 GRX_family Glutaredoxi 98.4 1.7E-06 3.6E-11 46.4 6.5 57 38-101 2-62 (72)
186 TIGR02181 GRX_bact Glutaredoxi 98.4 9.9E-07 2.1E-11 48.8 5.6 56 38-100 1-60 (79)
187 cd03418 GRX_GRXb_1_3_like Glut 98.4 2.2E-06 4.8E-11 46.8 6.7 56 38-100 2-62 (75)
188 cd03072 PDI_b'_ERp44 PDIb' fam 98.4 5.3E-06 1.1E-10 49.0 8.5 96 19-120 5-109 (111)
189 cd03027 GRX_DEP Glutaredoxin ( 98.4 2.5E-06 5.3E-11 46.5 6.6 57 38-101 3-63 (73)
190 cd02983 P5_C P5 family, C-term 98.3 1.9E-05 4.2E-10 47.9 10.3 105 13-122 3-118 (130)
191 PF07449 HyaE: Hydrogenase-1 e 98.3 2.7E-05 5.8E-10 45.5 10.3 93 11-109 8-105 (107)
192 TIGR00365 monothiol glutaredox 98.3 7.7E-06 1.7E-10 47.2 7.8 61 34-101 11-79 (97)
193 COG1225 Bcp Peroxiredoxin [Pos 98.3 1.4E-05 3E-10 49.9 9.2 92 27-118 23-155 (157)
194 PF00837 T4_deiodinase: Iodoth 98.2 1.3E-05 2.8E-10 53.0 8.0 110 7-118 77-236 (237)
195 PRK10824 glutaredoxin-4; Provi 98.2 1E-05 2.2E-10 48.0 6.8 60 35-101 15-82 (115)
196 COG0695 GrxC Glutaredoxin and 98.2 1.7E-05 3.8E-10 44.1 7.3 54 38-98 3-62 (80)
197 PRK10638 glutaredoxin 3; Provi 98.2 1.2E-05 2.6E-10 45.0 6.4 57 38-101 4-64 (83)
198 cd02981 PDI_b_family Protein D 98.2 5.3E-05 1.1E-09 43.3 9.2 92 15-117 2-96 (97)
199 cd03028 GRX_PICOT_like Glutare 98.1 2E-05 4.4E-10 44.8 6.9 60 34-100 7-74 (90)
200 cd03073 PDI_b'_ERp72_ERp57 PDI 98.1 3.3E-05 7.2E-10 45.6 7.7 74 45-118 29-110 (111)
201 cd02972 DsbA_family DsbA famil 98.0 2.8E-05 6E-10 44.0 6.1 58 38-95 1-91 (98)
202 PTZ00062 glutaredoxin; Provisi 97.9 0.00016 3.5E-09 47.2 8.0 51 44-101 126-180 (204)
203 COG1331 Highly conserved prote 97.7 0.00025 5.4E-09 53.2 7.8 79 26-104 35-126 (667)
204 PRK12759 bifunctional gluaredo 97.7 0.00011 2.3E-09 52.9 5.6 56 38-100 4-71 (410)
205 COG0386 BtuE Glutathione perox 97.6 0.00037 8E-09 43.1 6.2 93 27-120 18-161 (162)
206 PF01323 DSBA: DSBA-like thior 97.5 0.0018 3.8E-08 41.5 9.2 34 37-70 1-34 (193)
207 COG1651 DsbG Protein-disulfide 97.5 0.0014 3.1E-08 43.7 8.3 39 33-71 83-121 (244)
208 cd03067 PDI_b_PDIR_N PDIb fami 97.4 0.0021 4.7E-08 37.0 7.5 97 15-116 4-109 (112)
209 KOG1752 Glutaredoxin and relat 97.4 0.0014 3.1E-08 38.2 6.8 61 34-100 13-78 (104)
210 COG1999 Uncharacterized protei 97.4 0.0019 4.1E-08 42.3 8.2 98 24-121 57-206 (207)
211 PF07912 ERp29_N: ERp29, N-ter 97.4 0.0087 1.9E-07 35.8 10.3 100 12-118 4-118 (126)
212 KOG1651 Glutathione peroxidase 97.3 0.0022 4.8E-08 40.2 7.1 112 9-120 9-170 (171)
213 cd03031 GRX_GRX_like Glutaredo 97.3 0.0011 2.4E-08 41.1 5.5 56 39-101 3-72 (147)
214 cd03066 PDI_b_Calsequestrin_mi 97.3 0.01 2.2E-07 34.4 9.2 94 14-118 2-100 (102)
215 cd02974 AhpF_NTD_N Alkyl hydro 97.2 0.012 2.7E-07 33.7 10.1 84 21-118 8-93 (94)
216 cd03013 PRX5_like Peroxiredoxi 97.1 0.0024 5.2E-08 39.9 6.1 43 33-75 28-75 (155)
217 PF13743 Thioredoxin_5: Thiore 97.1 0.0035 7.6E-08 40.0 6.8 33 40-72 2-35 (176)
218 cd03069 PDI_b_ERp57 PDIb famil 97.1 0.018 4E-07 33.4 9.1 91 14-118 2-103 (104)
219 PF13848 Thioredoxin_6: Thiore 96.8 0.012 2.6E-07 37.2 7.5 63 52-119 8-75 (184)
220 KOG2792 Putative cytochrome C 96.8 0.01 2.2E-07 39.9 7.1 95 27-121 132-277 (280)
221 cd03041 GST_N_2GST_N GST_N fam 96.7 0.029 6.2E-07 30.6 7.5 70 38-117 2-75 (77)
222 COG4545 Glutaredoxin-related p 96.6 0.0064 1.4E-07 33.0 4.3 57 39-101 5-77 (85)
223 cd03040 GST_N_mPGES2 GST_N fam 96.6 0.04 8.8E-07 29.8 7.9 71 38-119 2-76 (77)
224 cd02978 KaiB_like KaiB-like fa 96.5 0.013 2.8E-07 31.8 5.2 57 37-93 3-61 (72)
225 TIGR03140 AhpF alkyl hydropero 96.4 0.081 1.8E-06 39.4 10.6 90 21-123 8-99 (515)
226 KOG2640 Thioredoxin [Function 96.4 0.0017 3.6E-08 44.6 1.4 88 33-120 75-163 (319)
227 PRK15317 alkyl hydroperoxide r 96.4 0.11 2.5E-06 38.6 11.0 89 21-123 8-98 (517)
228 cd03068 PDI_b_ERp72 PDIb famil 96.2 0.1 2.2E-06 30.5 10.3 94 14-117 2-106 (107)
229 COG0450 AhpC Peroxiredoxin [Po 96.1 0.12 2.7E-06 33.4 8.8 86 33-118 32-160 (194)
230 cd03060 GST_N_Omega_like GST_N 96.1 0.025 5.4E-07 30.3 5.0 58 39-100 2-60 (71)
231 cd03074 PDI_b'_Calsequestrin_C 96.1 0.12 2.6E-06 30.3 9.6 99 19-119 7-120 (120)
232 COG3531 Predicted protein-disu 96.1 0.13 2.8E-06 33.4 8.6 43 78-120 165-210 (212)
233 cd02990 UAS_FAF1 UAS family, F 96.1 0.16 3.4E-06 31.2 11.5 97 21-119 4-133 (136)
234 COG2761 FrnE Predicted dithiol 96.1 0.23 5.1E-06 33.0 10.0 41 79-123 176-217 (225)
235 TIGR02654 circ_KaiB circadian 96.0 0.024 5.3E-07 31.9 4.7 60 35-94 3-64 (87)
236 PRK09301 circadian clock prote 96.0 0.024 5.3E-07 32.8 4.7 80 33-113 4-87 (103)
237 cd02977 ArsC_family Arsenate R 96.0 0.0071 1.5E-07 35.2 2.6 75 39-118 2-86 (105)
238 PHA03075 glutaredoxin-like pro 96.0 0.012 2.5E-07 34.8 3.4 29 35-63 2-30 (123)
239 PF13417 GST_N_3: Glutathione 96.0 0.1 2.2E-06 28.1 8.0 72 40-121 1-73 (75)
240 cd03037 GST_N_GRX2 GST_N famil 95.9 0.052 1.1E-06 28.9 5.5 68 40-116 3-70 (71)
241 PF02630 SCO1-SenC: SCO1/SenC; 95.8 0.035 7.7E-07 35.3 5.5 47 29-75 47-98 (174)
242 KOG2507 Ubiquitin regulatory p 95.8 0.21 4.5E-06 36.2 9.5 96 23-119 8-111 (506)
243 PF06764 DUF1223: Protein of u 95.6 0.36 7.7E-06 31.7 10.4 78 39-121 3-100 (202)
244 PF06953 ArsD: Arsenical resis 95.6 0.13 2.9E-06 30.9 6.8 55 64-120 39-103 (123)
245 PF06053 DUF929: Domain of unk 95.5 0.076 1.7E-06 35.8 6.3 56 33-94 57-112 (249)
246 TIGR01617 arsC_related transcr 95.3 0.037 8.1E-07 32.8 3.9 34 39-77 2-35 (117)
247 cd03036 ArsC_like Arsenate Red 95.2 0.024 5.3E-07 33.4 2.9 33 39-76 2-34 (111)
248 PRK01655 spxA transcriptional 95.2 0.036 7.7E-07 33.7 3.7 33 38-75 2-34 (131)
249 cd00570 GST_N_family Glutathio 95.0 0.097 2.1E-06 27.0 4.7 56 40-100 3-60 (71)
250 COG3019 Predicted metal-bindin 94.8 0.51 1.1E-05 29.0 7.9 74 35-117 25-102 (149)
251 cd03051 GST_N_GTT2_like GST_N 94.7 0.16 3.5E-06 26.9 5.2 57 39-99 2-62 (74)
252 PF00255 GSHPx: Glutathione pe 94.7 0.18 3.9E-06 29.7 5.6 47 28-75 15-63 (108)
253 cd03035 ArsC_Yffb Arsenate Red 94.5 0.046 9.9E-07 31.9 2.8 33 39-76 2-34 (105)
254 PF06491 Disulph_isomer: Disul 94.4 0.66 1.4E-05 28.2 7.5 106 10-119 14-132 (136)
255 PF04592 SelP_N: Selenoprotein 94.3 0.77 1.7E-05 30.7 8.2 42 33-74 25-71 (238)
256 cd03032 ArsC_Spx Arsenate Redu 94.3 0.099 2.1E-06 30.9 3.9 34 38-76 2-35 (115)
257 cd03059 GST_N_SspA GST_N famil 94.0 0.098 2.1E-06 27.8 3.3 69 39-117 2-71 (73)
258 PRK12559 transcriptional regul 94.0 0.096 2.1E-06 31.9 3.5 33 38-75 2-34 (131)
259 PF07689 KaiB: KaiB domain; I 93.9 0.025 5.4E-07 31.5 0.8 52 41-92 3-56 (82)
260 PF09673 TrbC_Ftype: Type-F co 93.7 0.85 1.8E-05 27.0 8.2 71 20-96 10-80 (113)
261 COG5429 Uncharacterized secret 93.5 0.56 1.2E-05 31.4 6.5 82 35-119 42-141 (261)
262 COG3634 AhpF Alkyl hydroperoxi 93.3 0.72 1.6E-05 33.1 7.1 66 33-100 115-180 (520)
263 cd03045 GST_N_Delta_Epsilon GS 92.8 0.32 6.9E-06 25.9 4.1 52 39-93 2-57 (74)
264 PRK13344 spxA transcriptional 92.6 0.21 4.6E-06 30.4 3.4 33 38-75 2-34 (132)
265 TIGR02742 TrbC_Ftype type-F co 92.3 1.6 3.5E-05 26.6 8.1 72 20-98 11-82 (130)
266 cd03055 GST_N_Omega GST_N fami 91.8 0.76 1.7E-05 25.7 4.9 53 38-93 19-72 (89)
267 cd03025 DsbA_FrnE_like DsbA fa 91.8 0.31 6.7E-06 31.1 3.7 26 38-63 3-28 (193)
268 COG5494 Predicted thioredoxin/ 91.6 1.2 2.7E-05 29.4 6.2 70 41-117 16-86 (265)
269 PF09822 ABC_transp_aux: ABC-t 91.4 3.2 7E-05 28.2 11.6 73 13-89 8-90 (271)
270 PF01216 Calsequestrin: Calseq 90.9 4.5 9.8E-05 28.9 12.1 111 8-121 245-370 (383)
271 COG0278 Glutaredoxin-related p 90.2 2.2 4.9E-05 24.7 5.7 65 33-101 14-83 (105)
272 cd03024 DsbA_FrnE DsbA family, 89.3 0.62 1.3E-05 29.9 3.5 34 78-115 166-200 (201)
273 cd03033 ArsC_15kD Arsenate Red 89.2 0.56 1.2E-05 27.8 3.0 33 38-75 2-34 (113)
274 PF04134 DUF393: Protein of un 89.0 0.73 1.6E-05 26.9 3.4 57 41-98 2-61 (114)
275 PF11287 DUF3088: Protein of u 89.0 0.67 1.4E-05 27.4 3.1 73 46-118 24-106 (112)
276 cd03056 GST_N_4 GST_N family, 88.3 2.4 5.3E-05 22.1 5.7 57 39-100 2-62 (73)
277 KOG1422 Intracellular Cl- chan 87.6 4.6 9.9E-05 26.7 6.5 68 45-122 20-88 (221)
278 cd03061 GST_N_CLIC GST_N famil 87.3 3.8 8.2E-05 23.3 6.3 67 44-120 20-87 (91)
279 KOG0912 Thiol-disulfide isomer 87.1 6.4 0.00014 27.8 7.3 110 5-119 203-319 (375)
280 TIGR00014 arsC arsenate reduct 86.8 0.82 1.8E-05 27.0 2.7 32 39-75 2-33 (114)
281 cd03052 GST_N_GDAP1 GST_N fami 86.6 3.4 7.4E-05 22.1 5.7 57 39-100 2-62 (73)
282 cd03022 DsbA_HCCA_Iso DsbA fam 86.3 0.97 2.1E-05 28.7 3.0 33 78-115 158-191 (192)
283 COG3011 Predicted thiol-disulf 85.9 6.1 0.00013 24.3 6.2 68 33-101 5-74 (137)
284 cd03034 ArsC_ArsC Arsenate Red 85.7 1 2.2E-05 26.5 2.7 32 39-75 2-33 (112)
285 PF13778 DUF4174: Domain of un 83.6 7.2 0.00016 23.2 8.0 78 41-118 15-111 (118)
286 KOG0855 Alkyl hydroperoxide re 82.7 10 0.00022 24.3 7.6 63 33-97 89-185 (211)
287 cd03053 GST_N_Phi GST_N family 81.6 6 0.00013 20.9 5.3 69 38-116 2-74 (76)
288 KOG0852 Alkyl hydroperoxide re 81.3 12 0.00026 24.2 8.1 88 31-118 30-160 (196)
289 COG1393 ArsC Arsenate reductas 81.2 1.9 4.2E-05 25.7 2.6 25 38-62 3-27 (117)
290 PRK13730 conjugal transfer pil 80.9 13 0.00029 24.5 8.3 21 76-96 151-171 (212)
291 TIGR01616 nitro_assoc nitrogen 80.5 2.7 5.9E-05 25.4 3.1 32 37-73 2-33 (126)
292 PRK00366 ispG 4-hydroxy-3-meth 79.7 7.3 0.00016 27.9 5.3 74 45-118 270-356 (360)
293 PRK10853 putative reductase; P 79.3 2.5 5.3E-05 25.2 2.6 33 38-75 2-34 (118)
294 cd03071 PDI_b'_NRX PDIb' famil 79.3 11 0.00023 22.3 7.2 87 33-119 13-115 (116)
295 PF03960 ArsC: ArsC family; I 78.6 3 6.5E-05 24.3 2.8 31 41-76 1-31 (110)
296 PRK10026 arsenate reductase; P 77.2 3.7 8E-05 25.4 3.0 31 38-73 4-34 (141)
297 cd03025 DsbA_FrnE_like DsbA fa 75.8 2.3 4.9E-05 27.1 1.9 21 78-98 160-180 (193)
298 PRK09481 sspA stringent starva 75.4 11 0.00024 24.5 5.1 77 33-119 6-83 (211)
299 PF04551 GcpE: GcpE protein; 74.6 5.9 0.00013 28.4 3.8 74 45-118 270-358 (359)
300 PF08806 Sep15_SelM: Sep15/Sel 73.9 7.4 0.00016 21.4 3.4 32 87-118 41-75 (78)
301 cd03049 GST_N_3 GST_N family, 73.5 11 0.00024 19.7 5.4 59 40-100 3-62 (73)
302 cd03021 DsbA_GSTK DsbA family, 71.7 5.8 0.00013 25.9 3.1 35 79-114 171-207 (209)
303 PRK10387 glutaredoxin 2; Provi 71.6 24 0.00052 22.7 6.4 71 40-119 3-73 (210)
304 cd03024 DsbA_FrnE DsbA family, 70.8 9.3 0.0002 24.4 3.9 30 40-69 3-35 (201)
305 PF11238 DUF3039: Protein of u 69.5 6.9 0.00015 20.2 2.4 30 27-56 17-57 (58)
306 PF09695 YtfJ_HI0045: Bacteria 69.1 26 0.00057 22.2 7.9 89 30-118 33-157 (160)
307 cd03058 GST_N_Tau GST_N family 68.8 15 0.00033 19.2 6.7 68 40-117 3-72 (74)
308 KOG2244 Highly conserved prote 66.9 8 0.00017 29.5 3.2 72 25-96 103-187 (786)
309 COG0821 gcpE 1-hydroxy-2-methy 65.7 28 0.0006 25.0 5.4 77 45-121 263-353 (361)
310 PF05176 ATP-synt_10: ATP10 pr 65.0 42 0.0009 23.0 7.5 40 78-117 205-248 (252)
311 cd03044 GST_N_EF1Bgamma GST_N 64.6 18 0.00038 19.1 3.7 57 40-100 3-62 (75)
312 PF14424 Toxin-deaminase: The 64.4 9.4 0.0002 23.3 2.7 27 43-72 105-131 (133)
313 cd03030 GRX_SH3BGR Glutaredoxi 64.3 24 0.00053 20.0 5.0 45 53-100 19-71 (92)
314 PF00352 TBP: Transcription fa 64.0 23 0.0005 19.6 4.3 60 55-120 20-80 (86)
315 PF12617 LdpA_C: Iron-Sulfur b 63.6 24 0.00052 22.9 4.5 72 48-119 19-97 (183)
316 cd03039 GST_N_Sigma_like GST_N 63.4 16 0.00036 19.0 3.4 55 41-100 4-60 (72)
317 cd03022 DsbA_HCCA_Iso DsbA fam 63.3 7.2 0.00016 24.7 2.3 25 40-64 3-27 (192)
318 cd03050 GST_N_Theta GST_N fami 62.7 21 0.00046 18.8 5.2 68 39-116 2-73 (76)
319 cd03054 GST_N_Metaxin GST_N fa 61.1 22 0.00048 18.5 5.1 58 44-117 14-71 (72)
320 COG3411 Ferredoxin [Energy pro 60.9 24 0.00051 18.7 4.3 31 88-121 17-47 (64)
321 cd03062 TRX_Fd_Sucrase TRX-lik 60.7 26 0.00056 20.0 4.0 31 88-121 53-85 (97)
322 PF02401 LYTB: LytB protein; 59.4 58 0.0013 22.7 6.4 95 19-119 166-278 (281)
323 PF13409 GST_N_2: Glutathione 58.4 26 0.00056 18.3 6.7 66 45-117 1-69 (70)
324 TIGR02182 GRXB Glutaredoxin, G 55.7 54 0.0012 21.3 6.5 69 41-118 3-71 (209)
325 PF11453 DUF2950: Protein of u 55.7 14 0.00031 25.4 2.7 42 79-120 223-264 (271)
326 PF04908 SH3BGR: SH3-binding, 53.4 36 0.00078 19.7 3.8 23 55-78 22-44 (99)
327 cd03038 GST_N_etherase_LigE GS 52.7 32 0.0007 18.5 3.5 67 43-118 13-82 (84)
328 TIGR00612 ispG_gcpE 1-hydroxy- 52.1 20 0.00044 25.6 3.0 59 45-103 261-332 (346)
329 PF02702 KdpD: Osmosensitive K 51.2 71 0.0015 21.3 7.6 70 33-102 3-73 (211)
330 PHA02131 hypothetical protein 50.8 34 0.00075 17.5 3.5 27 86-112 27-53 (70)
331 PRK13669 hypothetical protein; 49.9 44 0.00095 18.5 6.6 56 56-122 20-75 (78)
332 PF14437 MafB19-deam: MafB19-l 49.5 63 0.0014 20.2 5.4 35 34-71 99-135 (146)
333 cd06353 PBP1_BmpA_Med_like Per 49.0 68 0.0015 21.7 5.2 49 19-74 42-90 (258)
334 PRK15113 glutathione S-transfe 48.7 73 0.0016 20.7 5.2 56 35-93 3-64 (214)
335 PF11072 DUF2859: Protein of u 48.0 38 0.00083 21.0 3.5 17 77-93 121-137 (142)
336 TIGR02652 conserved hypothetic 47.9 7.2 0.00016 24.1 0.3 14 44-57 10-23 (163)
337 PF09654 DUF2396: Protein of u 47.8 7 0.00015 24.1 0.3 13 45-57 8-20 (161)
338 COG1744 Med Uncharacterized AB 46.0 70 0.0015 22.9 5.0 48 19-73 82-129 (345)
339 TIGR01287 nifH nitrogenase iro 45.8 16 0.00035 24.8 1.8 51 33-85 220-270 (275)
340 COG2077 Tpx Peroxiredoxin [Pos 45.6 77 0.0017 20.1 5.8 43 33-75 43-86 (158)
341 cd03021 DsbA_GSTK DsbA family, 45.4 41 0.00088 21.9 3.6 27 37-63 2-28 (209)
342 PF02608 Bmp: Basic membrane p 45.3 65 0.0014 22.4 4.8 48 20-74 47-94 (306)
343 TIGR02743 TraW type-F conjugat 44.5 28 0.0006 23.0 2.6 26 74-100 172-197 (202)
344 PLN02817 glutathione dehydroge 43.8 1E+02 0.0023 21.1 6.1 66 45-120 72-138 (265)
345 KOG1364 Predicted ubiquitin re 43.7 51 0.0011 23.7 3.9 57 66-122 133-192 (356)
346 cd03042 GST_N_Zeta GST_N famil 43.2 48 0.001 17.0 3.8 50 41-93 4-57 (73)
347 TIGR03759 conj_TIGR03759 integ 42.3 1E+02 0.0022 20.4 4.9 37 34-73 108-144 (200)
348 KOG2868 Decapping enzyme compl 42.3 61 0.0013 23.1 4.1 42 50-95 21-62 (335)
349 KOG0868 Glutathione S-transfer 41.9 11 0.00025 24.4 0.6 74 33-118 3-81 (217)
350 PF08353 DUF1727: Domain of un 41.6 75 0.0016 18.8 4.7 70 18-89 3-77 (113)
351 PF00708 Acylphosphatase: Acyl 41.4 64 0.0014 17.9 4.6 41 77-120 24-64 (91)
352 TIGR03765 ICE_PFL_4695 integra 41.1 49 0.0011 19.4 3.0 17 77-93 83-99 (105)
353 PHA02151 hypothetical protein 40.1 22 0.00047 22.6 1.5 15 33-47 202-216 (217)
354 KOG0406 Glutathione S-transfer 40.1 1.2E+02 0.0026 20.6 6.5 57 35-100 9-69 (231)
355 KOG0911 Glutaredoxin-related p 40.0 1.2E+02 0.0025 20.5 5.5 53 44-101 152-206 (227)
356 PLN00062 TATA-box-binding prot 39.9 96 0.0021 20.1 4.5 29 90-120 140-169 (179)
357 PF07700 HNOB: Heme NO binding 39.9 80 0.0017 19.9 4.2 40 34-73 127-168 (171)
358 TIGR00216 ispH_lytB (E)-4-hydr 39.4 1.3E+02 0.0029 21.0 5.7 97 19-119 165-277 (280)
359 PF07315 DUF1462: Protein of u 39.1 76 0.0016 18.1 8.2 67 45-115 8-92 (93)
360 PF07293 DUF1450: Protein of u 39.0 70 0.0015 17.7 3.8 58 54-122 18-75 (78)
361 cd00652 TBP_TLF TATA box bindi 38.5 1E+02 0.0022 19.7 4.5 29 90-120 141-170 (174)
362 cd04516 TBP_eukaryotes eukaryo 38.5 1E+02 0.0023 19.8 4.5 30 90-121 140-170 (174)
363 cd04517 TLF TBP-like factors ( 38.1 1.1E+02 0.0023 19.7 4.5 30 90-121 141-171 (174)
364 cd03076 GST_N_Pi GST_N family, 38.0 63 0.0014 16.9 3.9 56 40-100 4-60 (73)
365 cd04518 TBP_archaea archaeal T 37.9 1.1E+02 0.0024 19.7 4.6 29 90-120 140-169 (174)
366 PF05679 CHGN: Chondroitin N-a 37.7 1.8E+02 0.0039 22.1 6.6 57 33-89 280-340 (499)
367 PF14097 SpoVAE: Stage V sporu 35.8 54 0.0012 21.1 2.8 55 11-69 32-86 (180)
368 PLN02378 glutathione S-transfe 35.7 1E+02 0.0022 20.1 4.3 66 44-119 18-84 (213)
369 PRK00394 transcription factor; 35.7 1.2E+02 0.0027 19.5 4.6 29 90-120 141-170 (179)
370 PRK13738 conjugal transfer pil 35.6 52 0.0011 21.9 2.9 26 75-100 171-197 (209)
371 cd03375 TPP_OGFOR Thiamine pyr 35.1 90 0.002 20.1 4.0 28 16-43 156-183 (193)
372 PF11539 DUF3228: Protein of u 34.3 37 0.00081 22.2 2.0 42 6-48 14-55 (197)
373 PRK01045 ispH 4-hydroxy-3-meth 33.6 1.7E+02 0.0038 20.6 6.9 98 19-119 167-279 (298)
374 PRK08351 DNA-directed RNA poly 33.0 53 0.0011 17.2 2.1 37 43-86 15-51 (61)
375 cd01840 SGNH_hydrolase_yrhL_li 32.8 1.2E+02 0.0025 18.4 4.8 15 34-48 51-65 (150)
376 PF14307 Glyco_tran_WbsX: Glyc 32.4 1E+02 0.0023 21.9 4.2 41 33-73 157-199 (345)
377 COG2101 SPT15 TATA-box binding 32.0 1.4E+02 0.003 19.4 4.2 30 90-121 55-85 (185)
378 PF11211 DUF2997: Protein of u 31.8 72 0.0016 15.7 4.0 32 91-122 3-37 (48)
379 cd06403 PB1_Par6 The PB1 domai 31.7 68 0.0015 17.8 2.5 20 11-30 50-69 (80)
380 PF14275 DUF4362: Domain of un 31.5 52 0.0011 19.1 2.1 30 96-125 2-32 (98)
381 KOG4498 Uncharacterized conser 30.9 1.3E+02 0.0028 19.8 4.0 40 33-72 50-91 (197)
382 PRK14430 acylphosphatase; Prov 30.8 1.1E+02 0.0023 17.3 4.1 39 77-118 24-62 (92)
383 PF13120 DUF3974: Domain of un 30.5 32 0.0007 19.8 1.1 23 41-63 32-54 (126)
384 PF03227 GILT: Gamma interfero 30.4 1.2E+02 0.0025 17.6 3.8 21 38-58 3-24 (108)
385 PF07511 DUF1525: Protein of u 30.0 1.3E+02 0.0028 18.0 4.4 15 80-94 76-90 (114)
386 PF09547 Spore_IV_A: Stage IV 29.8 1.5E+02 0.0033 22.4 4.6 46 26-75 172-219 (492)
387 cd06538 CIDE_N_FSP27 CIDE_N do 29.5 1E+02 0.0022 17.1 2.9 24 78-101 29-52 (79)
388 KOG4079 Putative mitochondrial 29.3 1.1E+02 0.0024 19.0 3.3 35 89-123 75-111 (169)
389 PRK11752 putative S-transferas 28.9 1.9E+02 0.0041 19.6 5.7 60 33-93 40-106 (264)
390 TIGR03439 methyl_EasF probable 28.3 1.5E+02 0.0033 21.1 4.4 40 34-76 76-115 (319)
391 cd03048 GST_N_Ure2p_like GST_N 27.7 1E+02 0.0023 16.2 6.6 70 41-119 4-79 (81)
392 PF02310 B12-binding: B12 bind 27.6 1.3E+02 0.0028 17.3 4.4 39 34-72 50-88 (121)
393 PLN02473 glutathione S-transfe 27.2 1.8E+02 0.0038 18.7 7.5 58 38-100 3-64 (214)
394 PF15379 DUF4606: Domain of un 27.2 51 0.0011 19.3 1.6 17 43-59 31-47 (104)
395 cd07973 Spt4 Transcription elo 26.9 1.4E+02 0.003 17.3 4.1 68 41-117 18-93 (98)
396 TIGR03757 conj_TIGR03757 integ 26.8 60 0.0013 19.4 1.9 15 80-94 77-91 (113)
397 COG0266 Nei Formamidopyrimidin 26.3 21 0.00046 24.7 -0.1 6 45-50 267-272 (273)
398 KOG0095 GTPase Rab30, small G 26.2 1.8E+02 0.0039 18.5 4.5 33 32-64 77-109 (213)
399 PF11317 DUF3119: Protein of u 26.1 1.6E+02 0.0034 17.7 3.5 34 86-119 81-115 (116)
400 cd03376 TPP_PFOR_porB_like Thi 26.0 1.4E+02 0.003 20.1 3.8 29 16-44 172-200 (235)
401 PF09499 RE_ApaLI: ApaLI-like 25.9 2E+02 0.0042 18.8 4.3 40 23-64 134-173 (191)
402 COG0625 Gst Glutathione S-tran 25.9 1.1E+02 0.0025 19.6 3.3 72 40-120 3-77 (211)
403 cd06537 CIDE_N_B CIDE_N domain 25.8 1.2E+02 0.0026 16.9 2.8 24 78-101 29-52 (81)
404 COG3640 CooC CO dehydrogenase 25.5 1.2E+02 0.0027 20.8 3.4 34 56-90 21-54 (255)
405 COG5575 ORC2 Origin recognitio 25.5 1.8E+02 0.0038 21.7 4.2 65 48-121 242-309 (535)
406 PF02645 DegV: Uncharacterised 25.4 1.1E+02 0.0024 21.0 3.3 41 76-117 13-53 (280)
407 COG0295 Cdd Cytidine deaminase 25.1 34 0.00073 21.1 0.6 24 33-56 69-98 (134)
408 PF10114 PocR: Sensory domain 24.8 42 0.00092 20.9 1.1 29 75-103 9-38 (173)
409 cd02015 TPP_AHAS Thiamine pyro 24.8 1.7E+02 0.0038 18.5 3.9 9 65-73 165-173 (186)
410 PRK06163 hypothetical protein; 24.7 2E+02 0.0043 18.9 4.2 9 65-73 164-172 (202)
411 PRK14811 formamidopyrimidine-D 24.5 19 0.00042 24.7 -0.5 11 44-54 256-266 (269)
412 cd03047 GST_N_2 GST_N family, 24.4 1.2E+02 0.0025 15.7 3.7 51 40-93 3-57 (73)
413 TIGR00595 priA primosomal prot 24.2 2E+02 0.0044 21.8 4.7 20 56-75 275-294 (505)
414 KOG0854 Alkyl hydroperoxide re 24.2 1.8E+02 0.0039 19.1 3.7 43 33-75 30-76 (224)
415 cd02008 TPP_IOR_alpha Thiamine 24.1 1.9E+02 0.0041 18.2 4.0 30 15-44 145-177 (178)
416 TIGR00862 O-ClC intracellular 24.1 2.3E+02 0.0051 19.1 7.5 67 44-120 17-84 (236)
417 COG0678 AHP1 Peroxiredoxin [Po 24.0 1.2E+02 0.0026 19.3 2.9 39 33-72 36-82 (165)
418 cd02010 TPP_ALS Thiamine pyrop 23.9 1.7E+02 0.0038 18.5 3.8 10 65-74 161-170 (177)
419 PF09363 XFP_C: XFP C-terminal 23.6 94 0.002 20.6 2.5 22 18-43 87-108 (203)
420 KOG4277 Uncharacterized conser 23.6 2.9E+02 0.0062 19.9 9.0 77 33-117 152-229 (468)
421 PTZ00151 translationally contr 23.6 79 0.0017 20.4 2.1 12 87-98 156-167 (172)
422 cd02003 TPP_IolD Thiamine pyro 23.2 1.7E+02 0.0037 19.0 3.7 11 64-74 174-184 (205)
423 PF06220 zf-U1: U1 zinc finger 23.2 34 0.00073 15.9 0.3 10 44-53 4-13 (38)
424 cd02009 TPP_SHCHC_synthase Thi 23.1 1.6E+02 0.0034 18.6 3.5 21 19-39 150-170 (175)
425 PF04900 Fcf1: Fcf1; InterPro 22.9 98 0.0021 17.6 2.3 49 44-96 42-94 (101)
426 smart00592 BRK domain in trans 22.9 74 0.0016 15.5 1.5 26 95-120 12-37 (45)
427 PRK14420 acylphosphatase; Prov 22.8 1.5E+02 0.0033 16.5 4.6 41 78-121 23-63 (91)
428 PF09936 Methyltrn_RNA_4: SAM- 22.8 1.3E+02 0.0029 19.6 3.0 14 33-46 131-144 (185)
429 COG1636 Uncharacterized protei 22.8 2.4E+02 0.0052 18.7 6.3 43 33-76 26-71 (204)
430 KOG0867 Glutathione S-transfer 22.7 2E+02 0.0042 19.1 4.0 53 38-93 3-59 (226)
431 KOG0496 Beta-galactosidase [Ca 22.7 2.1E+02 0.0046 22.7 4.5 100 19-123 47-156 (649)
432 TIGR03521 GldG gliding-associa 22.5 3.7E+02 0.008 20.8 9.8 74 11-89 29-116 (552)
433 PF05988 DUF899: Bacterial pro 22.4 2.5E+02 0.0054 18.8 6.9 60 15-74 49-115 (211)
434 TIGR01764 excise DNA binding d 22.4 21 0.00045 16.7 -0.5 10 107-116 39-48 (49)
435 TIGR03406 FeS_long_SufT probab 22.3 2.3E+02 0.0049 18.3 4.0 41 36-76 116-156 (174)
436 COG1519 KdtA 3-deoxy-D-manno-o 22.3 3.4E+02 0.0074 20.3 6.9 35 38-72 51-85 (419)
437 PRK14451 acylphosphatase; Prov 22.2 1.6E+02 0.0035 16.5 3.9 40 77-119 23-62 (89)
438 KOG3286 Selenoprotein T [Gener 22.1 2.5E+02 0.0055 18.8 4.9 72 36-107 70-144 (226)
439 PF02445 NadA: Quinolinate syn 22.1 1.5E+02 0.0033 20.9 3.4 52 14-70 139-191 (296)
440 COG5270 PUA domain (predicted 21.9 27 0.00059 22.7 -0.2 17 35-51 6-22 (202)
441 KOG3160 Gamma-interferon induc 21.6 72 0.0016 21.4 1.7 40 33-72 38-80 (220)
442 cd03043 GST_N_1 GST_N family, 21.4 1.4E+02 0.003 15.5 3.5 52 44-100 8-62 (73)
443 PRK01103 formamidopyrimidine/5 21.3 29 0.00064 23.9 -0.1 6 45-50 267-272 (274)
444 PRK08573 phosphomethylpyrimidi 20.8 3.6E+02 0.0079 20.1 7.8 55 65-119 376-447 (448)
445 TIGR00762 DegV EDD domain prot 20.7 2.6E+02 0.0057 19.1 4.4 41 76-117 12-52 (275)
446 PF10589 NADH_4Fe-4S: NADH-ubi 20.4 54 0.0012 15.9 0.7 18 45-62 18-35 (46)
447 PF08671 SinI: Anti-repressor 20.2 1E+02 0.0022 13.6 1.5 13 105-117 16-28 (30)
448 COG4097 Predicted ferric reduc 20.2 2.2E+02 0.0047 21.2 3.9 46 33-79 342-387 (438)
449 PRK11633 cell division protein 20.1 2.5E+02 0.0054 19.0 4.0 46 75-120 162-212 (226)
450 KOG3445 Mitochondrial/chloropl 20.1 2.4E+02 0.0051 17.6 6.4 73 40-123 28-106 (145)
451 PF14639 YqgF: Holliday-juncti 20.1 2.4E+02 0.0051 17.6 4.7 46 22-72 54-105 (150)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-27 Score=144.80 Aligned_cols=106 Identities=34% Similarity=0.655 Sum_probs=98.2
Q ss_pred CceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccce
Q 033098 12 SRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPT 90 (127)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt 90 (127)
.....+.+.++|++.+.+ ++.||+|.|||+||++|+.+.|.|+++..++. .++|+.+|.|++.+++.+|+|..+||
T Consensus 42 ~~~~~~~s~~~~~~~Vi~---S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPt 118 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVIN---SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPT 118 (150)
T ss_pred cccccccCHHHHHHHHHc---cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeE
Confidence 356667799999998887 68999999999999999999999999999984 59999999999999999999999999
Q ss_pred EEEecCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 91 FLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 91 ~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
+++|+||....+..|. +.+.+.++|+++++
T Consensus 119 vlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 119 VLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999988 88999999999875
No 2
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.95 E-value=2.5e-26 Score=134.52 Aligned_cols=98 Identities=27% Similarity=0.460 Sum_probs=89.2
Q ss_pred cChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh---hHHHhcCCCccceEEEe
Q 033098 18 DSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK---DVASKLEVKAMPTFLLM 94 (127)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~ 94 (127)
++.++|++.+..+ ++++++|.||++||++|+.+.|.|++++++++++.|+.||+++++ +++++|++.++||+++|
T Consensus 1 ~~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 1 HSVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CCHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 3678899999765 689999999999999999999999999999988999999999874 78999999999999999
Q ss_pred cCCeEEEEEecCCHHHHHHHHHH
Q 033098 95 REGAVVDKLVGANPEEIRKRIDS 117 (127)
Q Consensus 95 ~~g~~~~~~~~~~~~~l~~~i~~ 117 (127)
++|+.+.++.|.+++++.+.+..
T Consensus 79 ~~G~~v~~~~G~~~~~l~~~~~~ 101 (103)
T cd02985 79 KDGEKIHEEEGIGPDELIGDVLY 101 (103)
T ss_pred eCCeEEEEEeCCCHHHHHHHHHh
Confidence 99999999999999988887654
No 3
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.8e-26 Score=132.99 Aligned_cols=102 Identities=46% Similarity=0.790 Sum_probs=90.9
Q ss_pred ecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecC
Q 033098 17 VDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMRE 96 (127)
Q Consensus 17 i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 96 (127)
+.+..+++.....+...+++++|+|||+||++|+.+.|.+.+++.+|+++.|+.+|+|+.+++++.+++..+|||+++++
T Consensus 4 v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~ 83 (106)
T KOG0907|consen 4 VETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKG 83 (106)
T ss_pred EEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEEC
Confidence 34555666666665556799999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEecCCHHHHHHHHHHH
Q 033098 97 GAVVDKLVGANPEEIRKRIDSF 118 (127)
Q Consensus 97 g~~~~~~~~~~~~~l~~~i~~~ 118 (127)
|+.+.++.|.+.+++++.+..+
T Consensus 84 g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 84 GEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred CEEEEEEecCCHHHHHHHHHhc
Confidence 9999999999999888887654
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.94 E-value=5.3e-26 Score=133.81 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=83.6
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCC-eEEEEEecCChhhHHHhcCCCccceEEEecCC
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMPTFLLMREG 97 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 97 (127)
+.++|++.+... .+++++|.|||+||++|+.+.|.|+++++++++ +.|+.||+|+++++..+|+|.++||+++|++|
T Consensus 1 ~~~~~~~~i~~~--~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 1 SGWAVDQAILSE--EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred CHHHHHHHHhcc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 356777777644 678999999999999999999999999999976 79999999999999999999999999999999
Q ss_pred eEEEEEecC-----------CHHHHHHHHHHH
Q 033098 98 AVVDKLVGA-----------NPEEIRKRIDSF 118 (127)
Q Consensus 98 ~~~~~~~~~-----------~~~~l~~~i~~~ 118 (127)
+.+.+..|. +.+.+.+.++.+
T Consensus 79 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 79 KHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 999888663 345555555544
No 5
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.94 E-value=3.6e-25 Score=129.19 Aligned_cols=100 Identities=35% Similarity=0.673 Sum_probs=93.5
Q ss_pred EEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceEEE
Q 033098 15 VKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 93 (127)
..+ +.++|++.+.. ++++++|+||++||++|+.+.|.|+++++.++ ++.|+.+|+++++.++++|++.++|++++
T Consensus 2 ~~l-t~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 2 IVL-TDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp EEE-STTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred EEC-CHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEE
Confidence 345 89999999985 47999999999999999999999999999997 89999999999999999999999999999
Q ss_pred ecCCeEEEEEecC-CHHHHHHHHHHH
Q 033098 94 MREGAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 94 ~~~g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
+++|+...++.|. +.++|.+||+++
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999999 999999999875
No 6
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.94 E-value=2.5e-25 Score=130.07 Aligned_cols=98 Identities=28% Similarity=0.510 Sum_probs=89.3
Q ss_pred EecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecCChhhHHHhcCCCccceEEE
Q 033098 16 KVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 16 ~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 93 (127)
.+.|.++|++.+. ++++++|+|||+||++|+.+.|.+++++++++ .+.|+.+|+| .++++++|++.++||+++
T Consensus 3 ~i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 3 EINNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLF 77 (102)
T ss_pred EccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEE
Confidence 4678999999875 67999999999999999999999999999984 4889999999 678999999999999999
Q ss_pred ecCCeEEEEEecCCHHHHHHHHHHH
Q 033098 94 MREGAVVDKLVGANPEEIRKRIDSF 118 (127)
Q Consensus 94 ~~~g~~~~~~~~~~~~~l~~~i~~~ 118 (127)
|++|+.+.+..|.+++.+.++|+++
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~~i~~~ 102 (102)
T cd02948 78 YKNGELVAVIRGANAPLLNKTITEL 102 (102)
T ss_pred EECCEEEEEEecCChHHHHHHHhhC
Confidence 9999999999999999999998763
No 7
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.7e-26 Score=150.14 Aligned_cols=113 Identities=27% Similarity=0.506 Sum_probs=102.0
Q ss_pred hhcCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCC
Q 033098 7 EQQNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEV 85 (127)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v 85 (127)
......++.++ |..+|++.+...+ ..+||+|+||+|||++|+++.|.|+++...|. ++.+++||+|..+.+...|||
T Consensus 18 ~~~~a~~I~dv-T~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi 95 (304)
T COG3118 18 DAMAAPGIKDV-TEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV 95 (304)
T ss_pred Cccccccceec-hHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc
Confidence 33455668899 9999999887764 56699999999999999999999999999995 599999999999999999999
Q ss_pred CccceEEEecCCeEEEEEecC-CHHHHHHHHHHHhhh
Q 033098 86 KAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 86 ~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
.++||++.|++|+++..+.|. .++.+.+|++++++.
T Consensus 96 qsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 96 QSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999999 567999999999876
No 8
>PHA02278 thioredoxin-like protein
Probab=99.93 E-value=3.3e-25 Score=129.30 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=82.3
Q ss_pred cChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC-CCeEEEEEecCCh----hhHHHhcCCCccceEE
Q 033098 18 DSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDV----KDVASKLEVKAMPTFL 92 (127)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~ 92 (127)
++.++|.+.+. ++++++|+|||+||++|+.+.|.++++++++ .++.|+.+|++.+ ++++++|+|.++||++
T Consensus 2 ~~~~~~~~~i~----~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAIR----QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHHh----CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 46778888885 7899999999999999999999999999875 3578999999975 6899999999999999
Q ss_pred EecCCeEEEEEecC-CHHHHHHH
Q 033098 93 LMREGAVVDKLVGA-NPEEIRKR 114 (127)
Q Consensus 93 ~~~~g~~~~~~~~~-~~~~l~~~ 114 (127)
+|++|+.+.+..|. +.+++.++
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999996 77777664
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=1.1e-24 Score=129.06 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=89.3
Q ss_pred CCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHH-HhcCCCc
Q 033098 10 NKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVA-SKLEVKA 87 (127)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~-~~~~v~~ 87 (127)
..+.+.++ +.++|.+.+.-. .++++++|.|||+||++|+.+.|.++++++.+. .+.|+.||+++++.++ ++|+|.+
T Consensus 7 ~~~~v~~l-~~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~ 84 (113)
T cd03006 7 QRSPVLDF-YKGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFY 84 (113)
T ss_pred CCCCeEEe-chhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcc
Confidence 45678888 889999874321 178999999999999999999999999999985 4999999999999998 5899999
Q ss_pred cceEEEecCCeEEEEEecC-CHHHHHHH
Q 033098 88 MPTFLLMREGAVVDKLVGA-NPEEIRKR 114 (127)
Q Consensus 88 ~Pt~~~~~~g~~~~~~~~~-~~~~l~~~ 114 (127)
+||+++|++|+...++.|. +.+.|..|
T Consensus 85 ~PTl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 85 FPVIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred cCEEEEEECCccceEEeCCCCHHHHHhh
Confidence 9999999999877777777 88888776
No 10
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.93 E-value=1.6e-24 Score=131.98 Aligned_cols=107 Identities=16% Similarity=0.261 Sum_probs=94.4
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCC-eEEEEEecCChhhHHHhcCCCccceEE
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMPTFL 92 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 92 (127)
+.++.+.+++++.+... .+++++|.|||+||++|+.+.|.|+++++++++ +.|+.||+|+++++++.|++.+.|+++
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVM 82 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEE
Confidence 34678899999999865 789999999999999999999999999999976 888999999999999999999877655
Q ss_pred -EecCCe-EEEEEec--------C-CHHHHHHHHHHHhhhh
Q 033098 93 -LMREGA-VVDKLVG--------A-NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 93 -~~~~g~-~~~~~~~--------~-~~~~l~~~i~~~~~~~ 122 (127)
+|++|+ .+.+..| . +.+++.+.++.++..+
T Consensus 83 ~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 83 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred EEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 889998 8888888 4 7889999998887654
No 11
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.92 E-value=1.1e-24 Score=127.78 Aligned_cols=99 Identities=25% Similarity=0.383 Sum_probs=87.9
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceE
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTF 91 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 91 (127)
.+.++ +.++|++.+.. ++++++|.||++||++|+.+.|.++++++++. .+.|+.+|++++++++++|++.++||+
T Consensus 2 ~v~~l-~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 2 SVITL-TPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI 77 (104)
T ss_pred cceEc-CHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence 45677 88899998775 56799999999999999999999999999984 599999999999999999999999999
Q ss_pred EEecCC-eEEEEEecC-C-HHHHHHHH
Q 033098 92 LLMREG-AVVDKLVGA-N-PEEIRKRI 115 (127)
Q Consensus 92 ~~~~~g-~~~~~~~~~-~-~~~l~~~i 115 (127)
++|++| +...++.|. + .++|.+||
T Consensus 78 ~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 78 RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999877 888888887 6 88888774
No 12
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=1.1e-24 Score=127.09 Aligned_cols=97 Identities=19% Similarity=0.302 Sum_probs=86.8
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceE
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTF 91 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 91 (127)
.++.+ +.++|++.+. ++++++|.||++||++|+.+.|.+++++++++ ++.|+.||+++++.++++|++.++||+
T Consensus 2 ~~~~l-~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 2 EIVTL-DRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred CeEEc-CHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence 35677 7889998885 56899999999999999999999999999985 589999999999999999999999999
Q ss_pred EEecCCeEEEEEecC-CHHHHHHH
Q 033098 92 LLMREGAVVDKLVGA-NPEEIRKR 114 (127)
Q Consensus 92 ~~~~~g~~~~~~~~~-~~~~l~~~ 114 (127)
++|++|+...++.|. +.+.|.+|
T Consensus 77 ~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccCCCCCCHHHHHhh
Confidence 999999888888777 77877765
No 13
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.92 E-value=2.5e-24 Score=124.47 Aligned_cols=93 Identities=32% Similarity=0.550 Sum_probs=84.0
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceEEEecCCeEE
Q 033098 22 SWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 22 ~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
+|++.+... ++++++|+||++||++|+.+.|.++++++.++ ++.++.+|++.++.++++|++.++|+++++++|+.+
T Consensus 2 ~f~~~i~~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQES--TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHHhc--CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 567777654 58899999999999999999999999999985 589999999999999999999999999999999999
Q ss_pred EEEecC-CHHHHHHHHH
Q 033098 101 DKLVGA-NPEEIRKRID 116 (127)
Q Consensus 101 ~~~~~~-~~~~l~~~i~ 116 (127)
.++.|. +.+++..||+
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 888888 7899988873
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.92 E-value=5.7e-24 Score=126.82 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=92.1
Q ss_pred CceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChh--hh--hccHHHHHHHhhC---CCeEEEEEecCChhhHHHhcC
Q 033098 12 SRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMP--SV--AMNPLFEELASAY---PDVLFLSVDVDDVKDVASKLE 84 (127)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~--C~--~~~~~l~~~~~~~---~~v~~~~vd~~~~~~~~~~~~ 84 (127)
..+..+ |.++|++.+.. ++.+++++||++||++ |+ .+.|.+.+++.++ .++.|+.||++++++++++||
T Consensus 9 ~~v~~l-t~~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~ 84 (120)
T cd03065 9 DRVIDL-NEKNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLG 84 (120)
T ss_pred cceeeC-ChhhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcC
Confidence 466777 88999999886 5779999999999977 99 8899999998887 469999999999999999999
Q ss_pred CCccceEEEecCCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 85 VKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 85 v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
|.++||+++|++|+++. +.|. +.+.+.+||++++
T Consensus 85 I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 85 LDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999999999887 7777 8999999999875
No 15
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.92 E-value=1.7e-24 Score=126.06 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=81.0
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC-ChhhHHHhcCCCccceEEEecCCeE
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD-DVKDVASKLEVKAMPTFLLMREGAV 99 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~ 99 (127)
+.+.+++... +|++++|.||++||++|+.+.|.++++++.++++.|+.||.+ +++.++++|++.++||+++|++| .
T Consensus 7 ~~~~~~~~~~--~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~ 83 (100)
T cd02999 7 NIALDLMAFN--REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P 83 (100)
T ss_pred hHHHHHHHhc--CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c
Confidence 3445555543 899999999999999999999999999999988999999999 78999999999999999999988 6
Q ss_pred EEEEecC-CHHHHHHHH
Q 033098 100 VDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 100 ~~~~~~~-~~~~l~~~i 115 (127)
..++.|. +.+.|.+||
T Consensus 84 ~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred eeEecCCCCHHHHHhhC
Confidence 7778887 888888774
No 16
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.92 E-value=5.7e-24 Score=126.32 Aligned_cols=92 Identities=25% Similarity=0.386 Sum_probs=85.1
Q ss_pred CCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccce
Q 033098 11 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPT 90 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt 90 (127)
.+.+..|.+.++|.+.+. ++++++|+||++||++|+.+.|.|++++++++++.|+.||.++++.++++|++.++||
T Consensus 3 ~g~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt 78 (113)
T cd02989 3 HGKYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPT 78 (113)
T ss_pred CCCeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCE
Confidence 467888988899999986 5689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCeEEEEEecC
Q 033098 91 FLLMREGAVVDKLVGA 106 (127)
Q Consensus 91 ~~~~~~g~~~~~~~~~ 106 (127)
+++|++|+.+.++.|.
T Consensus 79 ~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 79 VILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEEECCEEEEEEECc
Confidence 9999999999887654
No 17
>PRK09381 trxA thioredoxin; Provisional
Probab=99.92 E-value=1.1e-23 Score=124.48 Aligned_cols=104 Identities=25% Similarity=0.559 Sum_probs=93.6
Q ss_pred CceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC-CCeEEEEEecCChhhHHHhcCCCccce
Q 033098 12 SRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAMPT 90 (127)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt 90 (127)
..+.++ +.++|.+.+.. .+++++|+||++||++|+.+.|.++++++++ +++.|+.+|++..+.++++|++.++|+
T Consensus 3 ~~v~~~-~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 78 (109)
T PRK09381 3 DKIIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 78 (109)
T ss_pred Ccceee-ChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCE
Confidence 457778 77889887653 5789999999999999999999999999999 469999999999999999999999999
Q ss_pred EEEecCCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 91 FLLMREGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 91 ~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
+++|++|+++.+..|. +.+++..+|...+
T Consensus 79 ~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 79 LLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9999999999988888 8899999998765
No 18
>PRK10996 thioredoxin 2; Provisional
Probab=99.92 E-value=1.1e-23 Score=129.31 Aligned_cols=103 Identities=25% Similarity=0.604 Sum_probs=92.3
Q ss_pred CceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccce
Q 033098 12 SRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPT 90 (127)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt 90 (127)
..+..+ +.+++++.+. ++++++|+||++||++|+.+.+.++++++++. ++.|+.+|++++++++++|++.++|+
T Consensus 35 ~~~i~~-~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Pt 109 (139)
T PRK10996 35 GEVINA-TGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPT 109 (139)
T ss_pred CCCEEc-CHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCE
Confidence 345555 7888888775 68999999999999999999999999998874 69999999999999999999999999
Q ss_pred EEEecCCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 91 FLLMREGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 91 ~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
+++|++|+++.++.|. +.+.+.+|+++++
T Consensus 110 lii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 110 IMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999998888 8899999998763
No 19
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.92 E-value=4e-24 Score=126.73 Aligned_cols=99 Identities=15% Similarity=0.340 Sum_probs=86.7
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecCChhhHHHhcCCCccceEEEecC
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLEVKAMPTFLLMRE 96 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 96 (127)
+..+|.+.+... ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++..+.++++|++.++||+++|++
T Consensus 10 ~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 10 TFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred eHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 667777644321 168999999999999999999999999999984 59999999999999999999999999999999
Q ss_pred CeEEEEEecC-CHHHHHHHHHHH
Q 033098 97 GAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 97 g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
|+.+.+..|. +.+++.++|+++
T Consensus 89 g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 89 GQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred CEEEEEecCCCCHHHHHHHHhcC
Confidence 9999988887 889999998763
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.92 E-value=4.8e-24 Score=125.82 Aligned_cols=98 Identities=28% Similarity=0.517 Sum_probs=84.9
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC----C---CeEEEEEecCChhhHHHhcCC
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY----P---DVLFLSVDVDDVKDVASKLEV 85 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~----~---~v~~~~vd~~~~~~~~~~~~v 85 (127)
++.++ +.++|++.+. .+++++|+||++||++|+.+.|.++++++.+ + ++.|+.+|++++++++++|++
T Consensus 2 ~v~~l-~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v 76 (108)
T cd02996 2 EIVSL-TSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI 76 (108)
T ss_pred ceEEc-CHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC
Confidence 56778 8899999875 5789999999999999999999999888753 1 489999999999999999999
Q ss_pred CccceEEEecCCe-EEEEEecC-CHHHHHHHH
Q 033098 86 KAMPTFLLMREGA-VVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 86 ~~~Pt~~~~~~g~-~~~~~~~~-~~~~l~~~i 115 (127)
.++||+++|++|+ ....+.|. +.++|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999999998 44666676 788888775
No 21
>PTZ00051 thioredoxin; Provisional
Probab=99.92 E-value=1.3e-23 Score=121.81 Aligned_cols=96 Identities=40% Similarity=0.723 Sum_probs=88.6
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEE
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 93 (127)
+.++.+.+++.+.+. .+++++++||++||++|+.+.+.+++++++++++.|+.+|+++.+.++++|++.++||+++
T Consensus 2 v~~i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 567888889988876 6789999999999999999999999999999889999999999999999999999999999
Q ss_pred ecCCeEEEEEecCCHHHHHH
Q 033098 94 MREGAVVDKLVGANPEEIRK 113 (127)
Q Consensus 94 ~~~g~~~~~~~~~~~~~l~~ 113 (127)
+++|+++.++.|...++|.+
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 78 FKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred EeCCeEEEEEeCCCHHHhhc
Confidence 99999999999998887764
No 22
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.91 E-value=1.1e-23 Score=121.88 Aligned_cols=95 Identities=39% Similarity=0.805 Sum_probs=86.9
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhh-CCCeEEEEEecCChhhHHHhcCCCccceEEEecCC
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASA-YPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREG 97 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 97 (127)
|.++|++.+... .+++++|+||++||++|+.+.+.|++++++ ++++.++.+|.++.++++++|++.++||+++|++|
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 457888888865 479999999999999999999999999999 56899999999999999999999999999999999
Q ss_pred eEEEEEecCCHHHHHHHH
Q 033098 98 AVVDKLVGANPEEIRKRI 115 (127)
Q Consensus 98 ~~~~~~~~~~~~~l~~~i 115 (127)
+.+.+..|.+.++|.+.|
T Consensus 79 ~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEEEeCCCHHHHHHhh
Confidence 999999999999888876
No 23
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.91 E-value=3.3e-23 Score=123.15 Aligned_cols=93 Identities=28% Similarity=0.508 Sum_probs=83.2
Q ss_pred CCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccce
Q 033098 11 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPT 90 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt 90 (127)
.+.+.++ +.++|.+.+.... .+++++|+||++||++|+.+.|.+++++++++++.|+.||++++ .++++|++.++||
T Consensus 3 ~g~v~~i-~~~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 3 FGEVREI-SSKEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred CceEEEE-cHHHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 4567888 5599999887531 25899999999999999999999999999998999999999998 9999999999999
Q ss_pred EEEecCCeEEEEEecC
Q 033098 91 FLLMREGAVVDKLVGA 106 (127)
Q Consensus 91 ~~~~~~g~~~~~~~~~ 106 (127)
+++|++|+.+.+..|.
T Consensus 80 ~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 80 LLVYKNGELIDNIVGF 95 (113)
T ss_pred EEEEECCEEEEEEecH
Confidence 9999999999988764
No 24
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.91 E-value=3.6e-23 Score=121.07 Aligned_cols=99 Identities=11% Similarity=0.182 Sum_probs=84.8
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCC-eEEEEEecCChhhHHHhcCCCccceEEEecCCe
Q 033098 20 VESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMPTFLLMREGA 98 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 98 (127)
.+++++.+..+ ++++++|.|+++||++|+.+.|.|+++++++++ +.|+.||+|+.+++.+.|++...||+++|++|+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 46788888876 799999999999999999999999999999988 999999999999999999999999999999987
Q ss_pred EEEEEecC-----------CHHHHHHHHHHHhh
Q 033098 99 VVDKLVGA-----------NPEEIRKRIDSFVQ 120 (127)
Q Consensus 99 ~~~~~~~~-----------~~~~l~~~i~~~~~ 120 (127)
-+.-..|. +.+++.+.++.+..
T Consensus 80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e~~yr 112 (114)
T cd02986 80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR 112 (114)
T ss_pred EEEEecCCCCCcEEEEEcCchhHHHHHHHHHHc
Confidence 66533222 45777777766543
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.91 E-value=4.2e-23 Score=120.36 Aligned_cols=97 Identities=24% Similarity=0.475 Sum_probs=84.4
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecCChhhHHHhcCCCccce
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLEVKAMPT 90 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt 90 (127)
.+.++ +.++|++.+. +. ++|+||++||++|+.+.|.++++++.+. ++.|+.+|+++++.++++|++.++||
T Consensus 2 ~v~~l-~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt 74 (101)
T cd02994 2 NVVEL-TDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPT 74 (101)
T ss_pred ceEEc-ChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCE
Confidence 56778 7889998653 33 7899999999999999999999998763 69999999999999999999999999
Q ss_pred EEEecCCeEEEEEecC-CHHHHHHHHHH
Q 033098 91 FLLMREGAVVDKLVGA-NPEEIRKRIDS 117 (127)
Q Consensus 91 ~~~~~~g~~~~~~~~~-~~~~l~~~i~~ 117 (127)
++++++|++ .++.|. +.++|.+|+++
T Consensus 75 ~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 999999985 566677 88999998863
No 26
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3e-23 Score=134.39 Aligned_cols=109 Identities=36% Similarity=0.692 Sum_probs=103.0
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEE
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFL 92 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 92 (127)
++..|.+..+|...+..+ .++.++|.|++.||++|+...|.++.++.+|++..|+.||+|+.+..+..+||...|||+
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEE
Confidence 578899999999999887 889999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEEEEecCCHHHHHHHHHHHhhhhc
Q 033098 93 LMREGAVVDKLVGANPEEIRKRIDSFVQSIR 123 (127)
Q Consensus 93 ~~~~g~~~~~~~~~~~~~l~~~i~~~~~~~~ 123 (127)
+|.||..+.+..|.++..|++.+.+++..++
T Consensus 80 ff~ng~kid~~qGAd~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 80 FFRNGVKIDQIQGADASGLEEKVAKYASTSA 110 (288)
T ss_pred EEecCeEeeeecCCCHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999876543
No 27
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.90 E-value=1.1e-22 Score=128.99 Aligned_cols=97 Identities=22% Similarity=0.367 Sum_probs=85.6
Q ss_pred hcCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCc
Q 033098 8 QQNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKA 87 (127)
Q Consensus 8 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~ 87 (127)
....+.+.+|++.++|.+.+.... .+.+++|+||++||++|+.+.|.|++++.+|++++|+.||+++. .+..+|++.+
T Consensus 58 ~~~~g~v~ei~~~~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~ 135 (175)
T cd02987 58 GRRFGKVYELDSGEQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDA 135 (175)
T ss_pred cCCCCeEEEcCCHHHHHHHHHhcC-CCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCC
Confidence 345678889966699999987532 34599999999999999999999999999999999999999987 8999999999
Q ss_pred cceEEEecCCeEEEEEecC
Q 033098 88 MPTFLLMREGAVVDKLVGA 106 (127)
Q Consensus 88 ~Pt~~~~~~g~~~~~~~~~ 106 (127)
+||+++|++|+.+.++.|.
T Consensus 136 vPTlllyk~G~~v~~~vG~ 154 (175)
T cd02987 136 LPALLVYKGGELIGNFVRV 154 (175)
T ss_pred CCEEEEEECCEEEEEEech
Confidence 9999999999999888655
No 28
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.90 E-value=1.1e-22 Score=125.17 Aligned_cols=101 Identities=26% Similarity=0.463 Sum_probs=86.6
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCCh--hhHHHhcCCCccceEEEe-cC
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDV--KDVASKLEVKAMPTFLLM-RE 96 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~-~~ 96 (127)
.++++.+. ++++++|+||++||++|+.+.|.+.++++++. ++.|+.||++.. ..+.++|++.++|++++| ++
T Consensus 11 ~~~~~a~~----~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 11 TPPEVALS----NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred CCHHHHHh----CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 34555443 78999999999999999999999999999984 588888888764 578899999999999999 68
Q ss_pred CeEEEEEecC-CHHHHHHHHHHHhhhhccc
Q 033098 97 GAVVDKLVGA-NPEEIRKRIDSFVQSIRVY 125 (127)
Q Consensus 97 g~~~~~~~~~-~~~~l~~~i~~~~~~~~~~ 125 (127)
|+++.++.|. ..+++.++|++++...+.|
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence 9999999998 7899999999998776544
No 29
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.90 E-value=1.3e-22 Score=125.58 Aligned_cols=92 Identities=23% Similarity=0.420 Sum_probs=82.9
Q ss_pred CCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecCChhhHHHhcCCCc-
Q 033098 11 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLEVKA- 87 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~- 87 (127)
...+.++ +.++|++.+... .+++++|+||++||++|+.+.|.++++++++. ++.|+.||++++++++++|++.+
T Consensus 27 ~~~v~~l-~~~~f~~~l~~~--~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~ 103 (152)
T cd02962 27 PEHIKYF-TPKTLEEELERD--KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTS 103 (152)
T ss_pred CCccEEc-CHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceec
Confidence 4567777 788999888654 56899999999999999999999999999884 59999999999999999999988
Q ss_pred -----cceEEEecCCeEEEEEec
Q 033098 88 -----MPTFLLMREGAVVDKLVG 105 (127)
Q Consensus 88 -----~Pt~~~~~~g~~~~~~~~ 105 (127)
+||+++|++|+.+.+..|
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEec
Confidence 999999999999999887
No 30
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.90 E-value=9.8e-23 Score=120.23 Aligned_cols=98 Identities=22% Similarity=0.408 Sum_probs=85.1
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCC--hhhHHHhcCCCccce
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDD--VKDVASKLEVKAMPT 90 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~--~~~~~~~~~v~~~Pt 90 (127)
+.++ +.++|++.+.. .+++++|+||++||++|+.+.|.++++++.+. .+.|+.+|++. ++.++++|++.++||
T Consensus 2 v~~l-~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt 77 (109)
T cd03002 2 VYEL-TPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPT 77 (109)
T ss_pred eEEc-chhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCE
Confidence 5667 88899988875 57889999999999999999999999999985 58999999998 889999999999999
Q ss_pred EEEecCCe-----EEEEEecC-CHHHHHHHH
Q 033098 91 FLLMREGA-----VVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 91 ~~~~~~g~-----~~~~~~~~-~~~~l~~~i 115 (127)
+++|++|+ ....+.|. +.+++.+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 99997775 44566676 888888887
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.90 E-value=1.3e-22 Score=118.38 Aligned_cols=96 Identities=26% Similarity=0.593 Sum_probs=84.4
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC----CeEEEEEecCChhhHHHhcCCCccc
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVDDVKDVASKLEVKAMP 89 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~P 89 (127)
+..+ +.++|++.+. ++ +++|+||++||++|+.+.|.++++++++. ++.|+.+|+++++.++++|++.++|
T Consensus 2 ~~~l-~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 75 (102)
T cd03005 2 VLEL-TEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYP 75 (102)
T ss_pred eeEC-CHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCC
Confidence 4566 7888998885 33 59999999999999999999999998873 5999999999999999999999999
Q ss_pred eEEEecCCeEEEEEecC-CHHHHHHHH
Q 033098 90 TFLLMREGAVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 90 t~~~~~~g~~~~~~~~~-~~~~l~~~i 115 (127)
|+++|++|+...++.|. +.++|.+||
T Consensus 76 t~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999999988888888 788887764
No 32
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.90 E-value=2.8e-22 Score=131.12 Aligned_cols=111 Identities=23% Similarity=0.365 Sum_probs=97.2
Q ss_pred CCceEEecChhhHHHHHHHhh-cCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCcc
Q 033098 11 KSRVVKVDSVESWETFVSQAN-NQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAM 88 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~-~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~ 88 (127)
...+.++ +.++|++.+.... ..+++++|+||++||++|+.+.|.+++++++++ .+.|+.+|+++++.++++|+|.++
T Consensus 29 ~~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 29 ANALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcC
Confidence 4567888 8999999886542 136899999999999999999999999999995 499999999999999999999999
Q ss_pred ceEEEecCCeEEEEEecC-CHHHHHHHHHHHhhhh
Q 033098 89 PTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 89 Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~~ 122 (127)
||+++|++|+++....|. +.+++.+|+.+.....
T Consensus 108 PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 999999999998887776 8999999998876543
No 33
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.89 E-value=3.3e-22 Score=116.15 Aligned_cols=98 Identities=33% Similarity=0.657 Sum_probs=87.5
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceEEEecCC
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREG 97 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 97 (127)
+.+++.+.+.. .+++++|+||++||++|+.+.+.+++++++++ ++.|+.+|+++++.++++|++.++|+++++.+|
T Consensus 2 ~~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 2 TDANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CHHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 56677877764 46799999999999999999999999998885 699999999999999999999999999999999
Q ss_pred eEEEEEecC-CHHHHHHHHHHHh
Q 033098 98 AVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 98 ~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
+...+..|. +.+++.++|++.+
T Consensus 79 ~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 79 KEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred cEeeeecCCCCHHHHHHHHHhhC
Confidence 998888787 7799999998753
No 34
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.89 E-value=2.2e-22 Score=117.81 Aligned_cols=96 Identities=20% Similarity=0.300 Sum_probs=86.0
Q ss_pred CceEEecChhhHHHHHHHhhcCCCcEEEEEeCCC--ChhhhhccHHHHHHHhhCCC-eEEEEEecCChhhHHHhcCCCcc
Q 033098 12 SRVVKVDSVESWETFVSQANNQGCPVVVHFTAIW--CMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAM 88 (127)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~--c~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~ 88 (127)
.+.-.+ +.++|++.+. .+..++|.||++| |+.|+.+.|.|+++++++++ +.|+.+|+++++.++.+|+|.++
T Consensus 10 ~~~~~~-~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sI 84 (111)
T cd02965 10 HGWPRV-DAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRT 84 (111)
T ss_pred cCCccc-ccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcC
Confidence 445566 8889997774 6889999999997 99999999999999999965 89999999999999999999999
Q ss_pred ceEEEecCCeEEEEEecC-CHHHHH
Q 033098 89 PTFLLMREGAVVDKLVGA-NPEEIR 112 (127)
Q Consensus 89 Pt~~~~~~g~~~~~~~~~-~~~~l~ 112 (127)
||+++|++|+.+.+..|. +.+++.
T Consensus 85 PTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 85 PALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CEEEEEECCEEEEEEeCccCHHHHh
Confidence 999999999999999887 777765
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.89 E-value=6.7e-22 Score=115.61 Aligned_cols=97 Identities=28% Similarity=0.484 Sum_probs=84.9
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC---CeEEEEEecCC--hhhHHHhcCCCcc
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDD--VKDVASKLEVKAM 88 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~--~~~~~~~~~v~~~ 88 (127)
+.++ +.+++++.+. ++++++|+||++||++|+.+.|.++++++.+. .+.++.+|++. ++.++.+|++.++
T Consensus 2 ~~~l-~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~ 76 (104)
T cd02997 2 VVHL-TDEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGF 76 (104)
T ss_pred eEEe-chHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccc
Confidence 4566 6778888876 56799999999999999999999999988763 48899999998 8999999999999
Q ss_pred ceEEEecCCeEEEEEecC-CHHHHHHHH
Q 033098 89 PTFLLMREGAVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 89 Pt~~~~~~g~~~~~~~~~-~~~~l~~~i 115 (127)
||++++++|+++.++.|. +.+.+.+||
T Consensus 77 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 77 PTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred cEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999999988888887 888888774
No 36
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.88 E-value=1.1e-21 Score=114.61 Aligned_cols=98 Identities=22% Similarity=0.327 Sum_probs=84.3
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceEE
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFL 92 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 92 (127)
+.++ +..++++.+.. .+++++|+||++||++|+.+.|.+.+++++++ .+.|+.+|++++++++++|++.++|+++
T Consensus 2 v~~l-~~~~~~~~i~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 2 VVEL-TDSNFDKKVLN---SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred eEEc-CHHhHHHHHhc---CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEE
Confidence 4566 78888888774 46779999999999999999999999999884 6999999999999999999999999999
Q ss_pred EecCC-eEEEEEecC-CHHHHHHHH
Q 033098 93 LMREG-AVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 93 ~~~~g-~~~~~~~~~-~~~~l~~~i 115 (127)
+|.+| .....+.|. +.+++.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 99887 445556566 888888875
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.88 E-value=1.2e-21 Score=114.10 Aligned_cols=96 Identities=26% Similarity=0.449 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC---CeEEEEEecCChhhHHHhcCCCccceEEEec
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDDVKDVASKLEVKAMPTFLLMR 95 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 95 (127)
+.++|++.+. ++++++|+||++||+.|+.+.+.++++++.+. ++.++.+|+++++.++++|++.++|+++++.
T Consensus 2 ~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 2 TASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFP 77 (102)
T ss_pred chhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEec
Confidence 5667787775 68999999999999999999999999998884 5999999999999999999999999999997
Q ss_pred CCeEEEEEecC-CHHHHHHHHHHH
Q 033098 96 EGAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 96 ~g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
+|+....+.|. +.+++..||+++
T Consensus 78 ~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 78 KGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCCcceeecCCCCHHHHHHHHHhc
Confidence 77656667777 889999999875
No 38
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.88 E-value=2.4e-21 Score=116.33 Aligned_cols=100 Identities=11% Similarity=0.142 Sum_probs=82.5
Q ss_pred CCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh-----------hH
Q 033098 11 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-----------DV 79 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----------~~ 79 (127)
..++..+ +.+++.+.+. +++.++|+||++|||+|+.+.|.|++++++ .++.|+.+|++.++ ++
T Consensus 5 i~~~~~i-t~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~ 78 (122)
T TIGR01295 5 IKGLEVT-TVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAF 78 (122)
T ss_pred hccceec-CHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHH
Confidence 3455666 8888888887 678899999999999999999999999998 46889999988542 45
Q ss_pred HHhcC----CCccceEEEecCCeEEEEEecC--CHHHHHHHHH
Q 033098 80 ASKLE----VKAMPTFLLMREGAVVDKLVGA--NPEEIRKRID 116 (127)
Q Consensus 80 ~~~~~----v~~~Pt~~~~~~g~~~~~~~~~--~~~~l~~~i~ 116 (127)
.+.|+ +.++||++++++|+.+.+..|. +.++|++++.
T Consensus 79 ~~~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 79 RSRFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHHcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 56665 5569999999999999999884 6888888763
No 39
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.87 E-value=4.2e-21 Score=111.20 Aligned_cols=84 Identities=20% Similarity=0.475 Sum_probs=78.1
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEE 110 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~ 110 (127)
.+++++++||++||+.|+.+.+.++++.++++ ++.++.+|+++.+++..++++.++|+++++++|+++.+..|. +.++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~ 91 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKSE 91 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHHH
Confidence 68999999999999999999999999998885 699999999999999999999999999999999999999888 7888
Q ss_pred HHHHHH
Q 033098 111 IRKRID 116 (127)
Q Consensus 111 l~~~i~ 116 (127)
+.++++
T Consensus 92 ~~~~l~ 97 (97)
T cd02949 92 YREFIE 97 (97)
T ss_pred HHHhhC
Confidence 888763
No 40
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.87 E-value=4.6e-21 Score=113.86 Aligned_cols=89 Identities=22% Similarity=0.301 Sum_probs=78.6
Q ss_pred cCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEE--EEecC-CH
Q 033098 32 NQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVD--KLVGA-NP 108 (127)
Q Consensus 32 ~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~~~~~-~~ 108 (127)
.++..++|+||++||++|+.+.+.+++++..++.+.|+.+|.++++++..+|++.++||++++++|.... ++.|. +.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~ 99 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAG 99 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCch
Confidence 3677789999999999999999999999988878999999999999999999999999999998764443 56566 88
Q ss_pred HHHHHHHHHHhh
Q 033098 109 EEIRKRIDSFVQ 120 (127)
Q Consensus 109 ~~l~~~i~~~~~ 120 (127)
.++.++|+.++.
T Consensus 100 ~el~~~i~~i~~ 111 (113)
T cd02975 100 YEFASLIEDIVR 111 (113)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 41
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.87 E-value=2.1e-21 Score=113.49 Aligned_cols=98 Identities=31% Similarity=0.457 Sum_probs=83.0
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC---CeEEEEEecCChhhHHHhcCCCccc
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDDVKDVASKLEVKAMP 89 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~P 89 (127)
++.++ +.++|++.+.. .+++++|+||++||++|+.+.|.++++++.+. ++.|+.+|++++ +++..+++.++|
T Consensus 1 ~v~~l-~~~~f~~~i~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~P 75 (104)
T cd02995 1 PVKVV-VGKNFDEVVLD---SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFP 75 (104)
T ss_pred CeEEE-chhhhHHHHhC---CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCC
Confidence 35677 88899988875 46899999999999999999999999998874 499999999987 578889999999
Q ss_pred eEEEecCCe--EEEEEecC-CHHHHHHHH
Q 033098 90 TFLLMREGA--VVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 90 t~~~~~~g~--~~~~~~~~-~~~~l~~~i 115 (127)
++++|++|+ ...++.|. +.++|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999998776 45566666 788888775
No 42
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.87 E-value=1.2e-21 Score=114.85 Aligned_cols=92 Identities=25% Similarity=0.437 Sum_probs=78.2
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHH---HHHHhhCC-CeEEEEEecCC----hhhHHHhcCCCccceEE
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLF---EELASAYP-DVLFLSVDVDD----VKDVASKLEVKAMPTFL 92 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 92 (127)
+++.+.+. ++++++|+||++||++|+.+.+.+ .++++.+. ++.++.+|+++ .+.++++|++.++||++
T Consensus 2 ~~~~~~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQALA----QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHHH----cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 34555554 789999999999999999999887 57777765 79999999987 57889999999999999
Q ss_pred Eec--CCeEEEEEecC-CHHHHHHHHH
Q 033098 93 LMR--EGAVVDKLVGA-NPEEIRKRID 116 (127)
Q Consensus 93 ~~~--~g~~~~~~~~~-~~~~l~~~i~ 116 (127)
+|+ +|+...++.|. +.++|.++|+
T Consensus 78 ~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 78 FYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred EECCCCCCCCcccccccCHHHHHHHhC
Confidence 996 79998888887 8899888763
No 43
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.87 E-value=4.3e-21 Score=113.37 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=82.3
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecCC-hhhHHH-hcCCCcc
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDD-VKDVAS-KLEVKAM 88 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-~~~~~~-~~~v~~~ 88 (127)
.+.++ +.++|++++.... ++++++|.||++||++|+.+.|.++++++.+. ++.++.||++. ...++. .|++.++
T Consensus 2 ~v~~~-~~~~~~~~~~~~~-~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTL-SRAEIEALAKGER-RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceec-cHHHHHHHHhhhh-cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcC
Confidence 46777 8889998876422 67999999999999999999999999998884 59999999997 566776 5999999
Q ss_pred ceEEEecCC-eEEEEEecC--CHHHHHHHH
Q 033098 89 PTFLLMREG-AVVDKLVGA--NPEEIRKRI 115 (127)
Q Consensus 89 Pt~~~~~~g-~~~~~~~~~--~~~~l~~~i 115 (127)
||+++|.+| +....+.|. +.+.|..||
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999554 455666663 788887774
No 44
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.86 E-value=1.1e-20 Score=121.36 Aligned_cols=105 Identities=24% Similarity=0.337 Sum_probs=88.0
Q ss_pred hhcCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCC
Q 033098 7 EQQNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVK 86 (127)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~ 86 (127)
.....+.+.++ +..+|.+.+..+. ++.+|||+||++||++|+.+.+.|++++.+|+.++|+.||++.. ...|++.
T Consensus 77 ~~~~~G~v~ei-s~~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~ 151 (192)
T cd02988 77 EKSKFGEVYEI-SKPDYVREVTEAS-KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDK 151 (192)
T ss_pred hhCCCCeEEEe-CHHHHHHHHHhcC-CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCC
Confidence 34566788889 8888888777642 34689999999999999999999999999999999999998764 5899999
Q ss_pred ccceEEEecCCeEEEEEecC--------CHHHHHHHHH
Q 033098 87 AMPTFLLMREGAVVDKLVGA--------NPEEIRKRID 116 (127)
Q Consensus 87 ~~Pt~~~~~~g~~~~~~~~~--------~~~~l~~~i~ 116 (127)
++||+++|++|+.+.++.|. +.++|+.+|.
T Consensus 152 ~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 152 NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 99999999999999888764 4566666554
No 45
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.86 E-value=4.5e-21 Score=112.16 Aligned_cols=98 Identities=31% Similarity=0.534 Sum_probs=82.9
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC---CeEEEEEecCC-hhhHHHhcCCCccc
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDD-VKDVASKLEVKAMP 89 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~-~~~~~~~~~v~~~P 89 (127)
+..+ +.+++++.+.. .+++++++||++||++|+.+.|.+.++++.+. ++.++.+|++. ++.++++|++.++|
T Consensus 2 ~~~l-~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P 77 (105)
T cd02998 2 VVEL-TDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFP 77 (105)
T ss_pred eEEc-chhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcC
Confidence 4566 77888886654 46799999999999999999999999998873 59999999999 89999999999999
Q ss_pred eEEEecCC-eEEEEEecC-CHHHHHHHH
Q 033098 90 TFLLMREG-AVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 90 t~~~~~~g-~~~~~~~~~-~~~~l~~~i 115 (127)
++++|.+| +....+.|. +.+++.+||
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 99999665 556666666 888888774
No 46
>PTZ00062 glutaredoxin; Provisional
Probab=99.86 E-value=8.4e-21 Score=122.42 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=84.6
Q ss_pred cChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCC
Q 033098 18 DSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREG 97 (127)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 97 (127)
.+.+++.+.+.. +...++++|||+||++|+.+.+.+.+++++++++.|+.||.+ |+|.++|+|++|++|
T Consensus 4 ~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 4 IKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECC
Confidence 467788888763 237789999999999999999999999999999999999977 999999999999999
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhhh
Q 033098 98 AVVDKLVGANPEEIRKRIDSFVQSI 122 (127)
Q Consensus 98 ~~~~~~~~~~~~~l~~~i~~~~~~~ 122 (127)
+.+.++.|.++.++..+++++.+..
T Consensus 73 ~~i~r~~G~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 73 QLINSLEGCNTSTLVSFIRGWAQKG 97 (204)
T ss_pred EEEeeeeCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999887644
No 47
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.85 E-value=1.2e-20 Score=110.52 Aligned_cols=85 Identities=20% Similarity=0.357 Sum_probs=74.8
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCC----CeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC-C
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-N 107 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~ 107 (127)
++++++|.||++||++|+.+.|.++++++.+. ++.++.+|++..+.++++|++.++||+++|++|.. ..+.|. +
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~-~~~~G~~~ 92 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA-YNYRGPRT 92 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc-eeecCCCC
Confidence 56799999999999999999999999998872 49999999999999999999999999999977754 456666 8
Q ss_pred HHHHHHHHHHH
Q 033098 108 PEEIRKRIDSF 118 (127)
Q Consensus 108 ~~~l~~~i~~~ 118 (127)
.+++.+|+++.
T Consensus 93 ~~~l~~~~~~~ 103 (104)
T cd03000 93 KDDIVEFANRV 103 (104)
T ss_pred HHHHHHHHHhh
Confidence 89999999875
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.85 E-value=1e-20 Score=109.46 Aligned_cols=93 Identities=28% Similarity=0.445 Sum_probs=81.6
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC---CCeEEEEEecCChhhHHHhcCCCccceEEEec
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDVKDVASKLEVKAMPTFLLMR 95 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 95 (127)
+..+|.+.+. ++++++|+||++||++|+.+.+.++++++.+ .++.|+.+|+++++.++++|++.++|+++++.
T Consensus 4 ~~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 4 TDDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFP 79 (101)
T ss_pred cHHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEc
Confidence 6678888777 4569999999999999999999999999888 57999999999999999999999999999997
Q ss_pred CC-eEEEEEecC-CHHHHHHHH
Q 033098 96 EG-AVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 96 ~g-~~~~~~~~~-~~~~l~~~i 115 (127)
+| +...++.|. +.+++.+|+
T Consensus 80 ~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 80 NGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCCcccccCCCCcCHHHHHhhC
Confidence 66 777777776 788887764
No 49
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.2e-21 Score=135.27 Aligned_cols=113 Identities=24% Similarity=0.395 Sum_probs=100.9
Q ss_pred cCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC----CCeEEEEEecCChhhHHHhcC
Q 033098 9 QNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDVKDVASKLE 84 (127)
Q Consensus 9 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~----~~v~~~~vd~~~~~~~~~~~~ 84 (127)
...+.+.++ +.++|+..+. .+..++|.||||||++|+++.|.+++.+... +.+..+.||++++.+++.+|+
T Consensus 22 ~~~~~Vl~L-t~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~ 96 (493)
T KOG0190|consen 22 KAEEDVLVL-TKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYE 96 (493)
T ss_pred CcccceEEE-ecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhc
Confidence 357788888 9999999998 6789999999999999999999999988776 469999999999999999999
Q ss_pred CCccceEEEecCCeEEEEEecC-CHHHHHHHHHHHhhhhcccc
Q 033098 85 VKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSIRVYV 126 (127)
Q Consensus 85 v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~~~~~~ 126 (127)
++++||+.+|+||+....+.|+ ..+.+..|+.+..+++..++
T Consensus 97 v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l 139 (493)
T KOG0190|consen 97 VRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTL 139 (493)
T ss_pred CCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCCceec
Confidence 9999999999999976666677 89999999999888776554
No 50
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.84 E-value=4.1e-20 Score=111.61 Aligned_cols=95 Identities=19% Similarity=0.381 Sum_probs=78.0
Q ss_pred HHHhhcCC-CcEEEEEeCCCChhhhhccHHHH---HHHhhC-CCeEEEEEecCCh-------------hhHHHhcCCCcc
Q 033098 27 VSQANNQG-CPVVVHFTAIWCMPSVAMNPLFE---ELASAY-PDVLFLSVDVDDV-------------KDVASKLEVKAM 88 (127)
Q Consensus 27 ~~~~~~~~-~~v~v~f~~~~c~~C~~~~~~l~---~~~~~~-~~v~~~~vd~~~~-------------~~~~~~~~v~~~ 88 (127)
+..+..++ ++++|.||++||++|+.+.+.+. .+.+.+ .++.++.+|++.. ..+..+|++.++
T Consensus 6 ~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~ 85 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT 85 (125)
T ss_pred HHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc
Confidence 33333478 99999999999999999998774 455544 4688999998864 688999999999
Q ss_pred ceEEEec-C-CeEEEEEecC-CHHHHHHHHHHHhhh
Q 033098 89 PTFLLMR-E-GAVVDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 89 Pt~~~~~-~-g~~~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
||++++. + |+++.+..|. +.+.+.++|+.++..
T Consensus 86 Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 86 PTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred cEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 9999984 5 6999999888 889999999988764
No 51
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.84 E-value=6.3e-20 Score=104.41 Aligned_cols=90 Identities=42% Similarity=0.802 Sum_probs=80.6
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEE
Q 033098 22 SWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 22 ~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 101 (127)
+|++.+. .+++++|+||++||++|+.+.+.++++.+..+++.|+.+|++..+.+++.|++.++|+++++.+|+.+.
T Consensus 2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 4555555 458999999999999999999999999988778999999999999999999999999999999999998
Q ss_pred EEecC-CHHHHHHHH
Q 033098 102 KLVGA-NPEEIRKRI 115 (127)
Q Consensus 102 ~~~~~-~~~~l~~~i 115 (127)
.+.|. +.++|.++|
T Consensus 78 ~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 RVVGADPKEELEEFL 92 (93)
T ss_pred EEecCCCHHHHHHHh
Confidence 88888 668888876
No 52
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.83 E-value=1.1e-19 Score=108.09 Aligned_cols=98 Identities=20% Similarity=0.373 Sum_probs=80.4
Q ss_pred EecChhhHHHHHHHhhcCCCcEEEEEeC-------CCChhhhhccHHHHHHHhhCC-CeEEEEEecCC-------hhhHH
Q 033098 16 KVDSVESWETFVSQANNQGCPVVVHFTA-------IWCMPSVAMNPLFEELASAYP-DVLFLSVDVDD-------VKDVA 80 (127)
Q Consensus 16 ~i~~~~~~~~~~~~~~~~~~~v~v~f~~-------~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~-------~~~~~ 80 (127)
.+++.++|.+.+... ++++++|.||| +||++|+.+.|.+++++++++ ++.|+.||+++ +.++.
T Consensus 5 ~~~~~~~f~~~i~~~--~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKSH--EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHhc--CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 456778888888764 57899999999 999999999999999999997 79999999976 45889
Q ss_pred HhcCCC-ccceEEEecCCeEEEEEecCCHHHHHHHH
Q 033098 81 SKLEVK-AMPTFLLMREGAVVDKLVGANPEEIRKRI 115 (127)
Q Consensus 81 ~~~~v~-~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i 115 (127)
..|++. ++||++++++|..+....-.+.+.+..|+
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred hccCcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 999998 99999999887655443333666666554
No 53
>PTZ00102 disulphide isomerase; Provisional
Probab=99.82 E-value=3.2e-19 Score=128.59 Aligned_cols=105 Identities=21% Similarity=0.443 Sum_probs=92.3
Q ss_pred CceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC----CCeEEEEEecCChhhHHHhcCCCc
Q 033098 12 SRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDVKDVASKLEVKA 87 (127)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~----~~v~~~~vd~~~~~~~~~~~~v~~ 87 (127)
..+..+ +.+++++.+. +++.++|.||++||++|+++.|.+.++++.+ +++.|+.+|++.+..++++|++.+
T Consensus 32 ~~v~~l-~~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~ 106 (477)
T PTZ00102 32 EHVTVL-TDSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG 106 (477)
T ss_pred CCcEEc-chhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc
Confidence 456777 8889998886 5789999999999999999999999887655 369999999999999999999999
Q ss_pred cceEEEecCCeEEEEEecC-CHHHHHHHHHHHhhhh
Q 033098 88 MPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 88 ~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~~ 122 (127)
+||+++|.+|+.+ ++.|. +.+.+.+|+++++++.
T Consensus 107 ~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 107 YPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPA 141 (477)
T ss_pred ccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCC
Confidence 9999999988877 66676 8999999999987654
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.82 E-value=2.9e-19 Score=128.05 Aligned_cols=105 Identities=26% Similarity=0.462 Sum_probs=91.9
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC----CCeEEEEEecCChhhHHHhcCCCcc
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDVKDVASKLEVKAM 88 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~----~~v~~~~vd~~~~~~~~~~~~v~~~ 88 (127)
.+..+ +.+++++.+. ++++++|+||++||++|+.+.|.+.++++.+ +++.|+.||++++++++++|++.++
T Consensus 2 ~v~~l-~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 76 (462)
T TIGR01130 2 DVLVL-TKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGY 76 (462)
T ss_pred CceEC-CHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccc
Confidence 35666 8889998886 5789999999999999999999999888765 3499999999999999999999999
Q ss_pred ceEEEecCCeE-EEEEecC-CHHHHHHHHHHHhhhh
Q 033098 89 PTFLLMREGAV-VDKLVGA-NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 89 Pt~~~~~~g~~-~~~~~~~-~~~~l~~~i~~~~~~~ 122 (127)
||+++|++|+. +..+.|. +.+.+.+|+.+.++..
T Consensus 77 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPA 112 (462)
T ss_pred cEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCCC
Confidence 99999999987 6667777 8999999999987643
No 55
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.81 E-value=1.6e-19 Score=107.39 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=71.5
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC----CeEEEEEecC--ChhhHHHhcCCC
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVD--DVKDVASKLEVK 86 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~vd~~--~~~~~~~~~~v~ 86 (127)
++.++ +.++|++.+.. .+++++|.||++||++|+.+.|.++++++++. .+.|..+|++ .+++++++|++.
T Consensus 2 ~v~~l-~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~ 77 (114)
T cd02992 2 PVIVL-DAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT 77 (114)
T ss_pred CeEEC-CHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC
Confidence 46677 88999999885 45899999999999999999999999998762 3899999975 467899999999
Q ss_pred ccceEEEecCCe
Q 033098 87 AMPTFLLMREGA 98 (127)
Q Consensus 87 ~~Pt~~~~~~g~ 98 (127)
++||+++|++|.
T Consensus 78 ~~Pt~~lf~~~~ 89 (114)
T cd02992 78 GYPTLRYFPPFS 89 (114)
T ss_pred CCCEEEEECCCC
Confidence 999999998887
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.80 E-value=1e-18 Score=124.26 Aligned_cols=108 Identities=27% Similarity=0.370 Sum_probs=88.3
Q ss_pred cCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecC-ChhhHHH-hcC
Q 033098 9 QNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVD-DVKDVAS-KLE 84 (127)
Q Consensus 9 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~-~~~~~~~-~~~ 84 (127)
.....+.++ +.++|++++.... ++++++|+||++||++|+.+.|.++++++++. ++.|+.+|++ .+..++. .|+
T Consensus 342 ~~~~~Vv~L-t~~nfe~ll~~~~-~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~ 419 (457)
T PLN02309 342 FNSQNVVAL-SRAGIENLLKLEN-RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQ 419 (457)
T ss_pred cCCCCcEEC-CHHHHHHHHHhhc-CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCC
Confidence 345577778 8899999875332 78999999999999999999999999999983 5999999999 7777876 699
Q ss_pred CCccceEEEecCCe-EEEEEe-cC-CHHHHHHHHHHH
Q 033098 85 VKAMPTFLLMREGA-VVDKLV-GA-NPEEIRKRIDSF 118 (127)
Q Consensus 85 v~~~Pt~~~~~~g~-~~~~~~-~~-~~~~l~~~i~~~ 118 (127)
|.++||+++|++|. ....+. +. +.+.|..|++.+
T Consensus 420 I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 LGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999999997664 223343 33 889999999875
No 57
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.80 E-value=1.3e-18 Score=123.89 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=86.9
Q ss_pred cCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecCChh-hH-HHhcC
Q 033098 9 QNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVK-DV-ASKLE 84 (127)
Q Consensus 9 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~-~~-~~~~~ 84 (127)
.....+.++ +.++|++.+... ..+++++|.||++||++|+.+.|.++++++++. ++.|+.||+|.+. .+ .+.|+
T Consensus 348 ~~~~~Vv~L-~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~ 425 (463)
T TIGR00424 348 FDSNNVVSL-SRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQ 425 (463)
T ss_pred cCCCCeEEC-CHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcC
Confidence 345578888 888999988622 178999999999999999999999999999984 4899999999754 34 47899
Q ss_pred CCccceEEEecCCe-EEEEEe-cC-CHHHHHHHHHHH
Q 033098 85 VKAMPTFLLMREGA-VVDKLV-GA-NPEEIRKRIDSF 118 (127)
Q Consensus 85 v~~~Pt~~~~~~g~-~~~~~~-~~-~~~~l~~~i~~~ 118 (127)
|.++||+++|++|. ....+. +. +.+.|..|++.+
T Consensus 426 I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 426 LGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999999998774 223343 34 889999998754
No 58
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.79 E-value=1.4e-18 Score=127.38 Aligned_cols=107 Identities=18% Similarity=0.418 Sum_probs=91.9
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHH---HHHHhhCCCeEEEEEecCCh----hhHHHhcCC
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLF---EELASAYPDVLFLSVDVDDV----KDVASKLEV 85 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l---~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v 85 (127)
....+.+.+++++.+..+..++|+++|+||++||++|+.+.+.. .++.+.++++.++.+|++++ .++.++|++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 56788899999999988876889999999999999999998864 67777777899999999853 678899999
Q ss_pred CccceEEEe-cCCeEE--EEEecC-CHHHHHHHHHHHh
Q 033098 86 KAMPTFLLM-REGAVV--DKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 86 ~~~Pt~~~~-~~g~~~--~~~~~~-~~~~l~~~i~~~~ 119 (127)
.++||+++| ++|+++ .++.|. +++++.++++++.
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 999999999 488874 677777 8999999998864
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.79 E-value=1.3e-18 Score=125.38 Aligned_cols=107 Identities=18% Similarity=0.341 Sum_probs=91.9
Q ss_pred CCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC---CeEEEEEecCChhhHHHhcCCCc
Q 033098 11 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDDVKDVASKLEVKA 87 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~v~~ 87 (127)
...+..+ +.++|++.+.. ++++++|+||++||++|+.+.|.++++++.+. .+.++.+|++.+...++.|++.+
T Consensus 356 ~~~v~~l-~~~~f~~~v~~---~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~ 431 (477)
T PTZ00102 356 DGPVKVV-VGNTFEEIVFK---SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSA 431 (477)
T ss_pred CCCeEEe-cccchHHHHhc---CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcc
Confidence 4456677 88999988754 68999999999999999999999999988873 49999999999999999999999
Q ss_pred cceEEEecCCeE-EEEEecC-CHHHHHHHHHHHhhh
Q 033098 88 MPTFLLMREGAV-VDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 88 ~Pt~~~~~~g~~-~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
+||+++|++|.. ..++.|. +.+.+.+||+++...
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred cCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 999999976654 3467776 899999999998754
No 60
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.78 E-value=2.3e-18 Score=101.77 Aligned_cols=98 Identities=10% Similarity=0.170 Sum_probs=78.5
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeC--CCCh---hhhhccHHHHHHHhhCCCeEEEEEec-----CChhhHHHh
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTA--IWCM---PSVAMNPLFEELASAYPDVLFLSVDV-----DDVKDVASK 82 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~--~~c~---~C~~~~~~l~~~~~~~~~v~~~~vd~-----~~~~~~~~~ 82 (127)
+++.+ +.++|++.+. +++.++|.||+ |||+ +|+.+.|.+.+.+. .+.++.||+ .++.+++++
T Consensus 2 g~v~L-~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~ 73 (116)
T cd03007 2 GCVDL-DTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGER 73 (116)
T ss_pred CeeEC-ChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHH
Confidence 46777 9999999997 67899999999 8888 77777666655443 499999999 457889999
Q ss_pred cCCC--ccceEEEecCCe--EEEEEec--CCHHHHHHHHHHH
Q 033098 83 LEVK--AMPTFLLMREGA--VVDKLVG--ANPEEIRKRIDSF 118 (127)
Q Consensus 83 ~~v~--~~Pt~~~~~~g~--~~~~~~~--~~~~~l~~~i~~~ 118 (127)
|||. ++||+++|.+|. ....+.| .+.+.|.+||++.
T Consensus 74 y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 74 YKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred hCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999 999999998884 2234555 4889999999864
No 61
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.77 E-value=1e-18 Score=104.34 Aligned_cols=101 Identities=19% Similarity=0.360 Sum_probs=77.1
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC-CCeEEEEEecCChh-hHHHhcCCCc--cceEEEe-c
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVK-DVASKLEVKA--MPTFLLM-R 95 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~-~~~~~~~v~~--~Pt~~~~-~ 95 (127)
.++++.+..+..++++++|.||++||++|+.+.|.+.+..... .+..|+.++++..+ .....|++.+ +||++++ +
T Consensus 6 ~~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~ 85 (117)
T cd02959 6 VTLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDP 85 (117)
T ss_pred eeHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECC
Confidence 3578888888778999999999999999999999998876644 24567777777654 4557888876 9999999 5
Q ss_pred CCeEEEEEec---C-CHHHHHHHHHHHhhh
Q 033098 96 EGAVVDKLVG---A-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 96 ~g~~~~~~~~---~-~~~~l~~~i~~~~~~ 121 (127)
+|+++.++.+ . +.+.+...+..+.++
T Consensus 86 ~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~~ 115 (117)
T cd02959 86 SGDVHPEIINKKGNPNYKYFYSSAAQVTES 115 (117)
T ss_pred CCCCchhhccCCCCccccccCCCHHHHHhh
Confidence 9998875443 3 566666767666554
No 62
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.76 E-value=1.8e-17 Score=92.95 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=68.6
Q ss_pred EEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHHHH
Q 033098 37 VVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKR 114 (127)
Q Consensus 37 v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~ 114 (127)
.+..||++||++|+.+.+.+++++++++ .+.++.||.++++++.++||+.++|++++ +|+. +..|. +.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 4678999999999999999999998884 59999999999999999999999999986 7763 45566 89999998
Q ss_pred HHHHh
Q 033098 115 IDSFV 119 (127)
Q Consensus 115 i~~~~ 119 (127)
+++.+
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 88753
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.75 E-value=8.9e-18 Score=98.01 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=77.0
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCC--ccceEEEecC--CeEEEEEecC-
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVK--AMPTFLLMRE--GAVVDKLVGA- 106 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~~~- 106 (127)
.++++++.|+++||++|+.+.+.++++++++. .+.|+.+|+++++.++..||+. ++|+++++++ |+......+.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 46899999999999999999999999999994 5999999999999999999999 9999999977 6666555555
Q ss_pred CHHHHHHHHHHH
Q 033098 107 NPEEIRKRIDSF 118 (127)
Q Consensus 107 ~~~~l~~~i~~~ 118 (127)
+.+.|.+|++++
T Consensus 91 ~~~~l~~fi~~~ 102 (103)
T cd02982 91 TAESLEEFVEDF 102 (103)
T ss_pred CHHHHHHHHHhh
Confidence 889999999875
No 64
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.74 E-value=8.2e-17 Score=105.49 Aligned_cols=88 Identities=25% Similarity=0.345 Sum_probs=74.8
Q ss_pred CCCcEEEEEeC---CCChhhhhccHHHHHHHhhCCCe--EEEEEecCChhhHHHhcCCCccceEEEecCCeEEE-EEecC
Q 033098 33 QGCPVVVHFTA---IWCMPSVAMNPLFEELASAYPDV--LFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVD-KLVGA 106 (127)
Q Consensus 33 ~~~~v~v~f~~---~~c~~C~~~~~~l~~~~~~~~~v--~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~~~ 106 (127)
++...++.|++ +||++|+.+.|.++++++.++++ .++.+|.+++++++++|++.++||+++|++|+.+. ++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 44555666887 99999999999999999999764 46666777999999999999999999999999874 77777
Q ss_pred -CHHHHHHHHHHHhh
Q 033098 107 -NPEEIRKRIDSFVQ 120 (127)
Q Consensus 107 -~~~~l~~~i~~~~~ 120 (127)
+.+++.+||+.+++
T Consensus 98 ~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 98 PAGYEFAALIEDIVR 112 (215)
T ss_pred CCHHHHHHHHHHHHH
Confidence 88999999998864
No 65
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.72 E-value=1.9e-16 Score=101.60 Aligned_cols=88 Identities=23% Similarity=0.422 Sum_probs=72.6
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh-----------------------hHHHhcCCCccc
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-----------------------DVASKLEVKAMP 89 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~v~~~P 89 (127)
++++++|+||++||++|+...|.|.++.++ ++.++.|+.++.+ .+...||+.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 689999999999999999999999998764 7888888865432 234578999999
Q ss_pred e-EEEecCCeEEEEEecC-CHHHHHHHHHHHhhhh
Q 033098 90 T-FLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 90 t-~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~~ 122 (127)
+ +++.++|++..++.|. +.++++++|+.+++..
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 6 4444899999999888 8899999998887654
No 66
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.71 E-value=6.2e-17 Score=95.83 Aligned_cols=83 Identities=30% Similarity=0.572 Sum_probs=64.8
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHH---HHhhC-CCeEEEEEecCCh--------------------hhHHHhcCCCcc
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEE---LASAY-PDVLFLSVDVDDV--------------------KDVASKLEVKAM 88 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~---~~~~~-~~v~~~~vd~~~~--------------------~~~~~~~~v~~~ 88 (127)
++++++++||++||++|+.+.+.+.+ +.... .++.++.++++.. .++.+.||+.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 78999999999999999999999875 34443 3688888887753 357889999999
Q ss_pred ceEEEe-cCCeEEEEEecC-CHHHHHHHH
Q 033098 89 PTFLLM-REGAVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 89 Pt~~~~-~~g~~~~~~~~~-~~~~l~~~i 115 (127)
||++++ .+|+++.+..|. ++++|.++|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999 589999888898 889998865
No 67
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.71 E-value=2.3e-16 Score=100.23 Aligned_cols=86 Identities=28% Similarity=0.459 Sum_probs=71.0
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC-----------------------hhhHHHhcCCCccc
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-----------------------VKDVASKLEVKAMP 89 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------------------~~~~~~~~~v~~~P 89 (127)
++++++|+||++||++|+.+.|.++++.++ ++.++.|+.++ ...+.+.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 689999999999999999999999998765 57777776532 23456778999999
Q ss_pred eEEEe-cCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 90 TFLLM-REGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 90 t~~~~-~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
+.+++ ++|+++.++.|. +.++++++++++++
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 64444 899999999887 89999999999874
No 68
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.70 E-value=5.1e-16 Score=104.68 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=73.0
Q ss_pred cCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC-----------hhhHHHhcCCCccceEEEecC-Ce-
Q 033098 32 NQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-----------VKDVASKLEVKAMPTFLLMRE-GA- 98 (127)
Q Consensus 32 ~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~~~-g~- 98 (127)
..+++++|+||++||++|+.+.|.|+++++++ ++.++.|++|. +..+.++|||.++|+++++.+ |+
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y-g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY-GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHc-CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 37899999999999999999999999999998 57777777665 346789999999999999853 54
Q ss_pred EEEEEecC-CHHHHHHHHHHHhhh
Q 033098 99 VVDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 99 ~~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
+.....|. +.++|.+.+..+...
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~~ 266 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAHP 266 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhcc
Confidence 44444476 899999999887663
No 69
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.70 E-value=2e-16 Score=98.31 Aligned_cols=86 Identities=17% Similarity=0.296 Sum_probs=66.2
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh------------hhHH-Hhc---CCCccceEEEe-c
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV------------KDVA-SKL---EVKAMPTFLLM-R 95 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~------------~~~~-~~~---~v~~~Pt~~~~-~ 95 (127)
.++..+|+||++||++|++..|.|+++++++ ++.++.|+.|.. .... ..| ++.++|+.+++ +
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4567799999999999999999999999998 567777776642 2222 345 78999997777 6
Q ss_pred CCeE-EEEEecC-CHHHHHHHHHHHh
Q 033098 96 EGAV-VDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 96 ~g~~-~~~~~~~-~~~~l~~~i~~~~ 119 (127)
+|+. ...+.|. +.+++++.|++++
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHhC
Confidence 6664 5566677 8899988887753
No 70
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.4e-17 Score=115.88 Aligned_cols=102 Identities=30% Similarity=0.498 Sum_probs=84.6
Q ss_pred CceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC---CCeEEEEEecCChhhHHHhcCCCcc
Q 033098 12 SRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDVKDVASKLEVKAM 88 (127)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~~~~~~~~~v~~~ 88 (127)
+++..+ -.++|++++.. .++-|+|.||||||+||+++.|.++++++.+ +++.++.+|.+.|. .....+.++
T Consensus 366 ~pVkvv-Vgknfd~iv~d---e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~f 439 (493)
T KOG0190|consen 366 SPVKVV-VGKNFDDIVLD---EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGF 439 (493)
T ss_pred CCeEEE-eecCHHHHhhc---cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--Ccccccccc
Confidence 668888 88999998876 7899999999999999999999999999998 47999999999885 345567779
Q ss_pred ceEEEecCCe---EEEEEecC-CHHHHHHHHHHHhh
Q 033098 89 PTFLLMREGA---VVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 89 Pt~~~~~~g~---~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
||+.+++.|. ++. +.|. +.+++..++.+...
T Consensus 440 PTI~~~pag~k~~pv~-y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 440 PTILFFPAGHKSNPVI-YNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ceEEEecCCCCCCCcc-cCCCcchHHHHhhhccCCC
Confidence 9999996553 443 3455 88999999887654
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.70 E-value=4.5e-16 Score=101.98 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=71.4
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEI 111 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l 111 (127)
.+..+++.||++||++|+.+.+.+++++.+++++.+..+|.+.++++..+|++.++||++++++|+. +.|. ..+++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l 208 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQF 208 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHH
Confidence 3444566699999999999999999999888889999999999999999999999999999988864 5566 78899
Q ss_pred HHHHHH
Q 033098 112 RKRIDS 117 (127)
Q Consensus 112 ~~~i~~ 117 (127)
.+++.+
T Consensus 209 ~~~l~~ 214 (215)
T TIGR02187 209 LEYILS 214 (215)
T ss_pred HHHHHh
Confidence 988875
No 72
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.69 E-value=2.8e-16 Score=95.02 Aligned_cols=82 Identities=29% Similarity=0.485 Sum_probs=65.2
Q ss_pred HHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEec-----------------------CChhhHHHhcC
Q 033098 28 SQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV-----------------------DDVKDVASKLE 84 (127)
Q Consensus 28 ~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~-----------------------~~~~~~~~~~~ 84 (127)
..+..++++++|+||++||+.|+...|.|+++.+++ ++.++.|+. |....+++.|+
T Consensus 19 ~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (127)
T cd03010 19 TSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG 97 (127)
T ss_pred cHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC
Confidence 333347899999999999999999999999999886 577777764 33446778899
Q ss_pred CCccce-EEEecCCeEEEEEecC-CHHH
Q 033098 85 VKAMPT-FLLMREGAVVDKLVGA-NPEE 110 (127)
Q Consensus 85 v~~~Pt-~~~~~~g~~~~~~~~~-~~~~ 110 (127)
+.++|+ +++.++|+++.++.|. +.+.
T Consensus 98 v~~~P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 98 VYGVPETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred CCCCCeEEEECCCceEEEEEeccCChHh
Confidence 999996 5444899999998887 5543
No 73
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.69 E-value=4.9e-16 Score=112.09 Aligned_cols=86 Identities=19% Similarity=0.335 Sum_probs=73.5
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEec----------------------------CChhhHHHh
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDV----------------------------DDVKDVASK 82 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~----------------------------~~~~~~~~~ 82 (127)
++++++|+|||+||++|+.+.|.|++++++++ ++.|+.|.. |.+..+.+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 78999999999999999999999999999884 677766542 344568889
Q ss_pred cCCCccceEEEe-cCCeEEEEEecC-CHHHHHHHHHHH
Q 033098 83 LEVKAMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 83 ~~v~~~Pt~~~~-~~g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
|++.++|+++++ ++|+++.++.|. +.++|.++|+..
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999998555 899999999998 899999999854
No 74
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.69 E-value=6.7e-16 Score=92.74 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=68.8
Q ss_pred HHHhhcCCCcEEEEEeCCCChhhhhccHH-H--HHHHhhC-CCeEEEEEecCChhhHHH--------hcCCCccceEEEe
Q 033098 27 VSQANNQGCPVVVHFTAIWCMPSVAMNPL-F--EELASAY-PDVLFLSVDVDDVKDVAS--------KLEVKAMPTFLLM 94 (127)
Q Consensus 27 ~~~~~~~~~~v~v~f~~~~c~~C~~~~~~-l--~~~~~~~-~~v~~~~vd~~~~~~~~~--------~~~v~~~Pt~~~~ 94 (127)
+..+..++|+++|+|+++||++|+.+.+. + .++.+.. .++.++.+|.++.+++.+ .||+.++|+++++
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl 87 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFL 87 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 44444589999999999999999999873 3 3555543 579999999998877654 3589999999888
Q ss_pred -cCCeEEEEEecC------CHHHHHHHHHHH
Q 033098 95 -REGAVVDKLVGA------NPEEIRKRIDSF 118 (127)
Q Consensus 95 -~~g~~~~~~~~~------~~~~l~~~i~~~ 118 (127)
.+|+++....+. +...+..+++++
T Consensus 88 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 88 TPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 789999777655 123555555544
No 75
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.68 E-value=2.6e-16 Score=112.88 Aligned_cols=104 Identities=26% Similarity=0.428 Sum_probs=86.1
Q ss_pred CCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC----CeEEEEEecCChhhHHHhcCCC
Q 033098 11 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVDDVKDVASKLEVK 86 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~ 86 (127)
...+..+ +.++|.+.+.. .++.++|+||++||++|+.+.|.++++++.+. ++.|+.+|++.+. +.. +++.
T Consensus 345 ~~~v~~l-~~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~ 418 (462)
T TIGR01130 345 EGPVKVL-VGKNFDEIVLD---ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVE 418 (462)
T ss_pred CCccEEe-eCcCHHHHhcc---CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCcc
Confidence 3456667 88999998765 68999999999999999999999999999883 5899999999874 334 9999
Q ss_pred ccceEEEecCCeEE--EEEecC-CHHHHHHHHHHHhh
Q 033098 87 AMPTFLLMREGAVV--DKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 87 ~~Pt~~~~~~g~~~--~~~~~~-~~~~l~~~i~~~~~ 120 (127)
++|++++|++|... ..+.|. +.+.+.+||++...
T Consensus 419 ~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 419 GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred ccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 99999999877542 344455 89999999988764
No 76
>PHA02125 thioredoxin-like protein
Probab=99.68 E-value=6.6e-16 Score=85.33 Aligned_cols=69 Identities=22% Similarity=0.608 Sum_probs=58.1
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC--CHHHHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA--NPEEIRKR 114 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~--~~~~l~~~ 114 (127)
+++||++||++|+.+.|.|+++. +.++.||.++++++.++|++.++||++ +|+.+.++.|. +..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999997652 568899999999999999999999987 68888888787 33555544
No 77
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.67 E-value=4.6e-16 Score=95.78 Aligned_cols=72 Identities=14% Similarity=0.361 Sum_probs=59.3
Q ss_pred hcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC---------CCeEEEEEecCCh-------------------------
Q 033098 31 NNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY---------PDVLFLSVDVDDV------------------------- 76 (127)
Q Consensus 31 ~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~---------~~v~~~~vd~~~~------------------------- 76 (127)
..++++++|+|||+||++|+...|.|.++++++ .++.++.|+.|+.
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~ 101 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR 101 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH
Confidence 348899999999999999999999999987644 2588888887743
Q ss_pred hhHHHhcCCCccceEEEe-cCCeEEEE
Q 033098 77 KDVASKLEVKAMPTFLLM-REGAVVDK 102 (127)
Q Consensus 77 ~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 102 (127)
..+...|++.++|+.+++ ++|+++.+
T Consensus 102 ~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 146678899999998777 78999876
No 78
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.66 E-value=3.4e-16 Score=104.78 Aligned_cols=90 Identities=17% Similarity=0.336 Sum_probs=79.8
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCC----CeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecCCH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANP 108 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~ 108 (127)
.+..++|.||||||.+|+++.|.+.++.-+.+ -+++..+|++..+.++.+||++++||+.+++++..+....|...
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~K 121 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREK 121 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccH
Confidence 56789999999999999999999999876652 49999999999999999999999999999999998887766699
Q ss_pred HHHHHHHHHHhhhh
Q 033098 109 EEIRKRIDSFVQSI 122 (127)
Q Consensus 109 ~~l~~~i~~~~~~~ 122 (127)
+.+..|-.+..+..
T Consensus 122 d~iieFAhR~a~ai 135 (468)
T KOG4277|consen 122 DAIIEFAHRCAAAI 135 (468)
T ss_pred HHHHHHHHhcccce
Confidence 99999988876543
No 79
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.65 E-value=9.3e-16 Score=88.27 Aligned_cols=66 Identities=33% Similarity=0.663 Sum_probs=54.9
Q ss_pred CCcEEEEEeCCCChhhhhccHHHHHHHhhCC---CeEEEEEecCCh-------------------------hhHHHhcCC
Q 033098 34 GCPVVVHFTAIWCMPSVAMNPLFEELASAYP---DVLFLSVDVDDV-------------------------KDVASKLEV 85 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~-------------------------~~~~~~~~v 85 (127)
||+++|+||++||++|+...|.|.++.++++ ++.|+.|..|+. ..+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999997 799999988754 356788999
Q ss_pred CccceEEEe-cCCeE
Q 033098 86 KAMPTFLLM-REGAV 99 (127)
Q Consensus 86 ~~~Pt~~~~-~~g~~ 99 (127)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999998888 67764
No 80
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.64 E-value=1.8e-15 Score=81.74 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=55.8
Q ss_pred EEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEE
Q 033098 37 VVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 37 v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
-+..|+++||++|+.+.+.++++++.++++.|..+|.++++++..+||+.++|++++ +|+..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 367899999999999999999998888889999999999999999999999999877 55544
No 81
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.63 E-value=4.8e-15 Score=82.04 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=57.0
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC--CHHHHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA--NPEEIRKR 114 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~--~~~~l~~~ 114 (127)
.|.||++||++|+.+.|.+++++++++ .+.|+.+| + .+.+.+||+.++|++++ ||+.+ ..|. ..+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 378999999999999999999999984 47777776 3 34477899999999988 88877 3353 55777776
Q ss_pred H
Q 033098 115 I 115 (127)
Q Consensus 115 i 115 (127)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 82
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.63 E-value=1.3e-14 Score=86.31 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=82.4
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHH-H--HHHHhhC-CCeEEEEEecC--ChhhHHHhcCCCccceEEEe
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPL-F--EELASAY-PDVLFLSVDVD--DVKDVASKLEVKAMPTFLLM 94 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~-l--~~~~~~~-~~v~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~ 94 (127)
..|++.+..+..++|+++|+|+++||++|+.+... | .++.+.. .+..++.+|.+ +...++..|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 46788888888899999999999999999999764 3 4444444 36888888887 45678899999999998888
Q ss_pred -c-CCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 95 -R-EGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 95 -~-~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
. +|+++.+..|. +++++...|++...
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 5 79999999999 89999999888754
No 83
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.63 E-value=7.5e-15 Score=93.01 Aligned_cols=86 Identities=28% Similarity=0.578 Sum_probs=73.7
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecCC----------------------hhhHHHhcCCCcc
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDD----------------------VKDVASKLEVKAM 88 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~----------------------~~~~~~~~~v~~~ 88 (127)
.+++++|+||++||+.|+...+.+.++.++++ ++.++.++.+. ...+.+.||+.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 68999999999999999999999999999884 48899888753 3467889999999
Q ss_pred ceEEEe-cCCeEEEEEecC-CHHHHHHHHHHH
Q 033098 89 PTFLLM-REGAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 89 Pt~~~~-~~g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
|+++++ ++|+++..+.|. +.+++.++++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 987776 789999887777 888999988765
No 84
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.62 E-value=2.9e-15 Score=91.05 Aligned_cols=70 Identities=23% Similarity=0.505 Sum_probs=58.3
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhC----CCeEEEEEecCCh------------------------hhHHHhcC
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDV------------------------KDVASKLE 84 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~----~~v~~~~vd~~~~------------------------~~~~~~~~ 84 (127)
++++++|+||++||++|+...|.+.++.+++ +++.++.|+.|.. ..+.+.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 7899999999999999999999999887776 2577777776643 35677899
Q ss_pred CCccceEEEe-cCCeEEEE
Q 033098 85 VKAMPTFLLM-REGAVVDK 102 (127)
Q Consensus 85 v~~~Pt~~~~-~~g~~~~~ 102 (127)
+.++|+++++ ++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999998888 68988765
No 85
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.62 E-value=2.5e-15 Score=91.47 Aligned_cols=76 Identities=25% Similarity=0.465 Sum_probs=60.2
Q ss_pred HHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC----CeEEEEEecCChh-------------------------
Q 033098 27 VSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP----DVLFLSVDVDDVK------------------------- 77 (127)
Q Consensus 27 ~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~------------------------- 77 (127)
+..+..+|++++|+||++||++|+...|.++++++++. ++.++.|+.+..+
T Consensus 10 v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (132)
T cd02964 10 VPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRE 89 (132)
T ss_pred ccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHH
Confidence 33344488999999999999999999999999887662 5778877766532
Q ss_pred hHHHhcCCCccceEEEe-cCCeEEEE
Q 033098 78 DVASKLEVKAMPTFLLM-REGAVVDK 102 (127)
Q Consensus 78 ~~~~~~~v~~~Pt~~~~-~~g~~~~~ 102 (127)
.+.+.|++.++|+++++ ++|+++.+
T Consensus 90 ~~~~~~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 90 LLEKQFKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEch
Confidence 34567999999998888 68888765
No 86
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.62 E-value=1.6e-14 Score=82.14 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=65.6
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEI 111 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l 111 (127)
.+...+..|+++||++|....+.++++++.++++.+..+|.++.++++.+||+.++|++++ ||+.+.. |. +.+++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~ 86 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEI 86 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHH
Confidence 5666789999999999999999999999999899999999999999999999999999976 8887764 43 44443
No 87
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.61 E-value=2.6e-15 Score=100.40 Aligned_cols=97 Identities=29% Similarity=0.537 Sum_probs=82.8
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC----C--CeEEEEEecCChhhHHHhcCCCccceEEE
Q 033098 20 VESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY----P--DVLFLSVDVDDVKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~----~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 93 (127)
..+++..+. ....++|.|||+||+.++.+.|.+++.+.++ | ++.+..|||++...++.+|-|..+||+-+
T Consensus 3 ~~N~~~il~----s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKv 78 (375)
T KOG0912|consen 3 SENIDSILD----SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKV 78 (375)
T ss_pred cccHHHhhc----cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeee
Confidence 345566665 5689999999999999999999998877655 4 59999999999999999999999999999
Q ss_pred ecCCeEEE-EEecC-CHHHHHHHHHHHhh
Q 033098 94 MREGAVVD-KLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 94 ~~~g~~~~-~~~~~-~~~~l~~~i~~~~~ 120 (127)
+.||.+.. .+-|. +.+.+.++|++.+.
T Consensus 79 frnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 79 FRNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred eeccchhhhhhccchhHHHHHHHHHHHhc
Confidence 99998876 44455 88999999988764
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.60 E-value=1.2e-14 Score=112.91 Aligned_cols=88 Identities=22% Similarity=0.401 Sum_probs=75.6
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEec---------------------------CChhhHHHhc
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDV---------------------------DDVKDVASKL 83 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~---------------------------~~~~~~~~~~ 83 (127)
++++++|+|||+||++|+...|.|+++.++|+ ++.++.|.. |....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 78999999999999999999999999999994 478887742 1234567889
Q ss_pred CCCccceEEEe-cCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 84 EVKAMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 84 ~v~~~Pt~~~~-~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
++.++|+++++ ++|+++.++.|. ..+++.++++.++.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 799999999888 78999999988865
No 89
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.59 E-value=1.3e-14 Score=85.39 Aligned_cols=73 Identities=38% Similarity=0.651 Sum_probs=65.2
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh-----------------------hhHHHhcCCCc
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV-----------------------KDVASKLEVKA 87 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~-----------------------~~~~~~~~v~~ 87 (127)
.+++++++||++||+.|+...+.+.++.+++ +++.++.|+.+.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 5789999999999999999999999999998 5799999999885 67889999999
Q ss_pred cceEEEe-cCCeEEEEEec
Q 033098 88 MPTFLLM-REGAVVDKLVG 105 (127)
Q Consensus 88 ~Pt~~~~-~~g~~~~~~~~ 105 (127)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9998887 78998887654
No 90
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.59 E-value=4e-14 Score=89.68 Aligned_cols=83 Identities=23% Similarity=0.320 Sum_probs=67.7
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh-------------hhHHHhcCC--CccceEEEe-cCCeEE-
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-------------KDVASKLEV--KAMPTFLLM-REGAVV- 100 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-------------~~~~~~~~v--~~~Pt~~~~-~~g~~~- 100 (127)
+|+||++||++|++..|.|.++++++ ++.++.|+.|.. ..+...||+ .++|+.+++ ++|++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77899999999999999999999998 688877776633 235567885 699996666 899886
Q ss_pred EEEecC-CHHHHHHHHHHHhhh
Q 033098 101 DKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 101 ~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
..+.|. +.+++++.+.++++.
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 467777 899999999988764
No 91
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.59 E-value=1.7e-14 Score=93.42 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=70.9
Q ss_pred HHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecC--------C---hhhHHHhcCC---------
Q 033098 28 SQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVD--------D---VKDVASKLEV--------- 85 (127)
Q Consensus 28 ~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~--------~---~~~~~~~~~v--------- 85 (127)
.....+|++++|.||++||++|+...|.|.++.+++ .++.++.|+++ . .....+++++
T Consensus 33 sL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~ 112 (199)
T PTZ00056 33 PMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIE 112 (199)
T ss_pred eHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeee
Confidence 333347899999999999999999999999999998 36999999763 1 1222333332
Q ss_pred ---------------------------Cccc----eEEEecCCeEEEEEecC-CHHHHHHHHHHHhhh
Q 033098 86 ---------------------------KAMP----TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 86 ---------------------------~~~P----t~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
..+| +|++.++|+++.++.|. +.+++++.|+++++.
T Consensus 113 v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 113 VNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred ccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1223 56666999999999887 788999999988764
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.57 E-value=4.2e-14 Score=84.89 Aligned_cols=81 Identities=26% Similarity=0.451 Sum_probs=62.9
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEec---------------------CChhhHHHhcCCCccceE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV---------------------DDVKDVASKLEVKAMPTF 91 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~---------------------~~~~~~~~~~~v~~~Pt~ 91 (127)
.+++++|+||++||++|+.+.|.|.++++++ .+..+.+|- +.+..+++.|++.++|++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY-PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhC-CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 6799999999999999999999999998775 333333222 234578899999999999
Q ss_pred EEecCCeEEEEEecC-CHHHHHHH
Q 033098 92 LLMREGAVVDKLVGA-NPEEIRKR 114 (127)
Q Consensus 92 ~~~~~g~~~~~~~~~-~~~~l~~~ 114 (127)
+++.++++...+.|. +++.|.+.
T Consensus 98 ~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 98 VIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEcCCCeEEEEeccCCHHHHHhh
Confidence 898544488888887 78887653
No 93
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.56 E-value=4.3e-14 Score=85.37 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=61.9
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecC---------------------------ChhhHHHhc
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVD---------------------------DVKDVASKL 83 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~---------------------------~~~~~~~~~ 83 (127)
++++++|+||++||++|+...|.|+++.+++. ++.++.|+.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 78999999999999999999999999999984 5888888542 113467779
Q ss_pred CCCccceEEEe-cCCeEEEEEecC
Q 033098 84 EVKAMPTFLLM-REGAVVDKLVGA 106 (127)
Q Consensus 84 ~v~~~Pt~~~~-~~g~~~~~~~~~ 106 (127)
++.++|+.+++ ++|+++..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999998888 789999888764
No 94
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.56 E-value=2.4e-13 Score=81.96 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=84.2
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeC--CCChhhhhccHHHHHHHhhCC-C-eEEEEEecCChhhHHHhcCCCcc
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTA--IWCMPSVAMNPLFEELASAYP-D-VLFLSVDVDDVKDVASKLEVKAM 88 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~--~~c~~C~~~~~~l~~~~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~~ 88 (127)
+...+ +..+++..+. .+...+++|-. .-++.+....=.|++++++|+ + ++|+.||+|+++.++.+|||.++
T Consensus 18 g~~~~-~~~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~si 92 (132)
T PRK11509 18 GWTPV-SESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRF 92 (132)
T ss_pred CCCcc-ccccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccC
Confidence 34444 4466666665 33444444443 236778888888999999996 3 99999999999999999999999
Q ss_pred ceEEEecCCeEEEEEecC-CHHHHHHHHHHHhhhh
Q 033098 89 PTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 89 Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~~ 122 (127)
||+++|++|+.+.+..|. +.+++.++|++++...
T Consensus 93 PTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred CEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 999999999999999998 8999999999988643
No 95
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.54 E-value=1.2e-13 Score=88.95 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=65.1
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC--------------------hhhHHHhcCCCccceEE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD--------------------VKDVASKLEVKAMPTFL 92 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~--------------------~~~~~~~~~v~~~Pt~~ 92 (127)
++++++|+||++||+.|+...|.+.++.+++ ++.++.+..+. ..++.+.|++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 7899999999999999999999999998775 44444444221 23567789999999866
Q ss_pred Ee-cCCeEEEEEecCCHHHHHHHHHHHh
Q 033098 93 LM-REGAVVDKLVGANPEEIRKRIDSFV 119 (127)
Q Consensus 93 ~~-~~g~~~~~~~~~~~~~l~~~i~~~~ 119 (127)
++ ++|++..+......+.++++++.+-
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLEADR 179 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHHHHH
Confidence 65 8999887643336688888887653
No 96
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6e-14 Score=99.03 Aligned_cols=100 Identities=26% Similarity=0.452 Sum_probs=81.6
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCC-eEEEEEecCChhhHHHhcCCCccceEEEecCCe
Q 033098 20 VESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMPTFLLMREGA 98 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 98 (127)
...+...... .+++++|.||+|||++|+.+.|.++++++.+.+ +.+..||++.+++++..|++.++||+.++..|.
T Consensus 36 ~~~~~~~~~~---~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~ 112 (383)
T KOG0191|consen 36 LDSFFDFLLK---DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGK 112 (383)
T ss_pred ccccHHHhhc---cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCC
Confidence 3444444333 678999999999999999999999999988865 999999999999999999999999999998884
Q ss_pred EEEEEecC-CHHHHHHHHHHHhhhh
Q 033098 99 VVDKLVGA-NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 99 ~~~~~~~~-~~~~l~~~i~~~~~~~ 122 (127)
....+.+. +.+.+..++...+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 113 KPIDYSGPRNAESLAEFLIKELEPS 137 (383)
T ss_pred ceeeccCcccHHHHHHHHHHhhccc
Confidence 33334445 8888888887776544
No 97
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.53 E-value=1.7e-13 Score=84.57 Aligned_cols=75 Identities=39% Similarity=0.624 Sum_probs=63.8
Q ss_pred cCCCcEEEEEeCC-CChhhhhccHHHHHHHhhC--CCeEEEEEecCCh---------------------hhHHHhcCCC-
Q 033098 32 NQGCPVVVHFTAI-WCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------KDVASKLEVK- 86 (127)
Q Consensus 32 ~~~~~v~v~f~~~-~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~---------------------~~~~~~~~v~- 86 (127)
.++++++|.||++ ||++|+...|.+.++.+++ .++.++.|..+.. ..+.+.|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3799999999999 9999999999999998885 4688888876543 3577889988
Q ss_pred --------ccceEEEe-cCCeEEEEEecC
Q 033098 87 --------AMPTFLLM-REGAVVDKLVGA 106 (127)
Q Consensus 87 --------~~Pt~~~~-~~g~~~~~~~~~ 106 (127)
++|+++++ ++|+++..+.+.
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 99986665 999999999888
No 98
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.52 E-value=1.4e-13 Score=81.59 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=53.6
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhC-CCeEEEEEecCC---h-----------------hhHHHhcCCCccceE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDD---V-----------------KDVASKLEVKAMPTF 91 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~---~-----------------~~~~~~~~v~~~Pt~ 91 (127)
++++++|+||++||++|+...|.++++.+++ .++.++.+.-+. . ..+.+.|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 3799999999999999999999999998877 456666552111 1 245667888889987
Q ss_pred EEe-cCCeEEEE
Q 033098 92 LLM-REGAVVDK 102 (127)
Q Consensus 92 ~~~-~~g~~~~~ 102 (127)
+++ ++|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 666 68887764
No 99
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.52 E-value=7.1e-14 Score=93.77 Aligned_cols=108 Identities=23% Similarity=0.369 Sum_probs=81.7
Q ss_pred cCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCcc
Q 033098 9 QNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAM 88 (127)
Q Consensus 9 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~ 88 (127)
...+.+.+|.+.++|-+.+.... ++..|||+||.+.++.|..+...|..++.+|+.++|+.|.....+ +...|....+
T Consensus 122 ~~fG~v~ei~~~e~~l~~ie~~~-~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~L 199 (265)
T PF02114_consen 122 PRFGEVYEIDSGEEFLDAIEKES-KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNL 199 (265)
T ss_dssp ----SEEE--SHHHHHHHCCTSS-TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-
T ss_pred CcCceEEEccChhhHHHHHhccC-CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCC
Confidence 34678889988888888886542 456899999999999999999999999999999999999988765 6789999999
Q ss_pred ceEEEecCCeEEEEEecC--------CHHHHHHHHHHH
Q 033098 89 PTFLLMREGAVVDKLVGA--------NPEEIRKRIDSF 118 (127)
Q Consensus 89 Pt~~~~~~g~~~~~~~~~--------~~~~l~~~i~~~ 118 (127)
|++++|++|.++.++.+. ...+|+.+|.++
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999999988754 235666666553
No 100
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.52 E-value=7.2e-14 Score=100.74 Aligned_cols=103 Identities=20% Similarity=0.419 Sum_probs=85.1
Q ss_pred EEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHH---HHHHhhCCCeEEEEEecCCh----hhHHHhcCCCc
Q 033098 15 VKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLF---EELASAYPDVLFLSVDVDDV----KDVASKLEVKA 87 (127)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l---~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~ 87 (127)
..+++.+++++.+.++ ++|+|++.|||+||-.|+.+.+.. .+...+..+++...+|++++ .++.++||+-+
T Consensus 457 q~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 6776777889888876 557999999999999999999865 33444457999999999875 46789999999
Q ss_pred cceEEEec-CCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 88 MPTFLLMR-EGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 88 ~Pt~~~~~-~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
+|++++|. +|.......|. +.+.+.+++++..
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 99999994 77766667788 9999999998753
No 101
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.51 E-value=2.8e-13 Score=86.26 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=67.7
Q ss_pred HHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEE------EEEecCCh------------------------
Q 033098 27 VSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLF------LSVDVDDV------------------------ 76 (127)
Q Consensus 27 ~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~------~~vd~~~~------------------------ 76 (127)
+..+...||+.+|.|||.||++|+...|.+..++.+ ++.+ +.||.++.
T Consensus 52 ~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~v 129 (184)
T TIGR01626 52 WGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQV 129 (184)
T ss_pred ccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceE
Confidence 344445899999999999999999999999999765 4556 67776642
Q ss_pred -----hhHHHhcCCCccceE--EEecCCeEEEEEecC-CHHHHHHHH
Q 033098 77 -----KDVASKLEVKAMPTF--LLMREGAVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 77 -----~~~~~~~~v~~~Pt~--~~~~~g~~~~~~~~~-~~~~l~~~i 115 (127)
..+...||+.++|+. ++.++|+++..+.|. +.+++++.+
T Consensus 130 llD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 130 VLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred EECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 234567899999754 555999999999998 787777633
No 102
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.48 E-value=5e-13 Score=88.33 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=68.8
Q ss_pred hcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecC--------Ch---hhHH-HhcCC-----------
Q 033098 31 NNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVD--------DV---KDVA-SKLEV----------- 85 (127)
Q Consensus 31 ~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~--------~~---~~~~-~~~~v----------- 85 (127)
..+|++++|.||++||+.|+...|.|.++++++ .++.++.|+++ .. .+.. +++++
T Consensus 96 d~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~ 175 (236)
T PLN02399 96 KFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVN 175 (236)
T ss_pred HhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCC
Confidence 337899999999999999999999999999998 36999999863 11 1111 22211
Q ss_pred -----------------------Cccce-EEEecCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 86 -----------------------KAMPT-FLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 86 -----------------------~~~Pt-~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
...|+ +++.++|+++.++.|. +++++++.|+++++
T Consensus 176 G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 176 GPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 12366 4444999999999988 88999999999874
No 103
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.48 E-value=1.8e-13 Score=82.44 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=60.0
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHH---HHHHhhC-CCeEEEEEecCChhhHHHhcCCCccceEEEe-c
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLF---EELASAY-PDVLFLSVDVDDVKDVASKLEVKAMPTFLLM-R 95 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l---~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~ 95 (127)
.++++.+..+..++|+++|+|++.||++|+.+.... .++.+.. .++..+.++.+....-....| .++||++++ .
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~ 88 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDP 88 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECC
Confidence 378888888888999999999999999999999865 3333333 256655666553211111234 689999999 7
Q ss_pred CCeEEEEEecC
Q 033098 96 EGAVVDKLVGA 106 (127)
Q Consensus 96 ~g~~~~~~~~~ 106 (127)
+|+++.+..|.
T Consensus 89 ~g~vi~~i~Gy 99 (130)
T cd02960 89 SLTVRADITGR 99 (130)
T ss_pred CCCCccccccc
Confidence 88877766544
No 104
>smart00594 UAS UAS domain.
Probab=99.46 E-value=1.5e-12 Score=78.27 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=75.8
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHH---HHHHhhC-CCeEEEEEecCC--hhhHHHhcCCCccceEE
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLF---EELASAY-PDVLFLSVDVDD--VKDVASKLEVKAMPTFL 92 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l---~~~~~~~-~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~ 92 (127)
-...+++.+..+..++|+++|+|+++||++|+.+.... .++.+.. .++.+..+|++. ..+++..|++.++|+++
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVA 91 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence 44578888888877899999999999999999988753 3444333 368887788764 45789999999999988
Q ss_pred Ee-cCC-----eEEEEEecC-CHHHHHHHH
Q 033098 93 LM-REG-----AVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 93 ~~-~~g-----~~~~~~~~~-~~~~l~~~i 115 (127)
++ .+| .++.+..|. +++++...+
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 88 555 467777788 888888765
No 105
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.44 E-value=5.9e-13 Score=82.98 Aligned_cols=90 Identities=26% Similarity=0.265 Sum_probs=67.9
Q ss_pred hhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEec--------CCh---hhHHHh--------------
Q 033098 30 ANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDV--------DDV---KDVASK-------------- 82 (127)
Q Consensus 30 ~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~--------~~~---~~~~~~-------------- 82 (127)
+..+|++++|.||++||++|+...|.|.++.+++ .++.++.+++ +.. ....++
T Consensus 18 ~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~ 97 (153)
T TIGR02540 18 EKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKI 97 (153)
T ss_pred HHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEec
Confidence 3347899999999999999999999999999998 3699999885 211 112211
Q ss_pred ----------cCC---Cccc-----eEEEecCCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 83 ----------LEV---KAMP-----TFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 83 ----------~~v---~~~P-----t~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
|.+ .++| ++++.++|+++.++.|. +.+++.+.|++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 98 LGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 111 1367 57777999999999888 8888888887653
No 106
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-12 Score=92.73 Aligned_cols=104 Identities=24% Similarity=0.399 Sum_probs=89.1
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC---CCeEEEEEecCChhhHHHhcCCCccce
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDVKDVASKLEVKAMPT 90 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~~~~~~~~~v~~~Pt 90 (127)
+.++ +.+++...+.. .+..++|.||+|||++|+.+.|.+++++..+ .++.+..+|++.+..++.++++.++||
T Consensus 146 v~~l-~~~~~~~~~~~---~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVKD---SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred eEEc-cccchhhhhhc---cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 6677 77788877766 5688999999999999999999999999876 369999999998899999999999999
Q ss_pred EEEecCCeE-EEEEecC-CHHHHHHHHHHHhhh
Q 033098 91 FLLMREGAV-VDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 91 ~~~~~~g~~-~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
+++|++|.. .....+. +.+.+..|++...+.
T Consensus 222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 999987766 5555555 899999999988765
No 107
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.43 E-value=4.5e-13 Score=75.15 Aligned_cols=74 Identities=30% Similarity=0.553 Sum_probs=57.0
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHH---HHHHhhC-CCeEEEEEecCChhhHHHhcCCCccceEEEec
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLF---EELASAY-PDVLFLSVDVDDVKDVASKLEVKAMPTFLLMR 95 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l---~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 95 (127)
.++++.+..+..++++++|+|+++||++|+.+...+ .++.+.. .++.++.+|.+.........+ .++|+++++.
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 357788888888999999999999999999998876 4444422 579999999987655433222 6799998863
No 108
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.43 E-value=3.3e-12 Score=80.94 Aligned_cols=93 Identities=23% Similarity=0.401 Sum_probs=74.6
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecCCh-----------------------------hhHHH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDDV-----------------------------KDVAS 81 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-----------------------------~~~~~ 81 (127)
.+++++++||++||+.|....+.|.++.++++ ++.|+.|..+.. ..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 67899999999999999999999999999984 699999887531 24567
Q ss_pred hcCCCccceEEEe-cCCeEEEEEe---------c-CCHHHHHHHHHHHhhhhccc
Q 033098 82 KLEVKAMPTFLLM-REGAVVDKLV---------G-ANPEEIRKRIDSFVQSIRVY 125 (127)
Q Consensus 82 ~~~v~~~Pt~~~~-~~g~~~~~~~---------~-~~~~~l~~~i~~~~~~~~~~ 125 (127)
.|++..+|+++++ ++|+++.... + .+.+++.+.|+.++...+.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 8899999987777 7898886531 1 25688999999998776544
No 109
>PLN02412 probable glutathione peroxidase
Probab=99.43 E-value=2.6e-12 Score=81.17 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=69.1
Q ss_pred cCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecC--------ChhhH----HHhcC-------------
Q 033098 32 NQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVD--------DVKDV----ASKLE------------- 84 (127)
Q Consensus 32 ~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~--------~~~~~----~~~~~------------- 84 (127)
.++++++|.||++||+.|+...|.|.++.+++. ++.++.|+++ ...++ .++++
T Consensus 27 ~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 27 YKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred hCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 378999999999999999999999999999983 6999999763 22111 12211
Q ss_pred ---------------------CCccceEEEe-cCCeEEEEEecC-CHHHHHHHHHHHhhh
Q 033098 85 ---------------------VKAMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 85 ---------------------v~~~Pt~~~~-~~g~~~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
+...|+.+++ ++|+++.++.|. +++++++.|+++++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 2234774444 899999999888 889999999998764
No 110
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=3.1e-13 Score=96.99 Aligned_cols=106 Identities=20% Similarity=0.357 Sum_probs=80.7
Q ss_pred CCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC---CC-eEEEEEecC--ChhhHHHhc
Q 033098 10 NKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY---PD-VLFLSVDVD--DVKDVASKL 83 (127)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~---~~-v~~~~vd~~--~~~~~~~~~ 83 (127)
+..++..+ +.++|+..+... .+..+|.||++||++|+.+.|.++++++.. .+ +.++.|||- .|..+|++|
T Consensus 37 ~~D~ii~L-d~~tf~~~v~~~---~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef 112 (606)
T KOG1731|consen 37 PDDPIIEL-DVDTFNAAVFGS---RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREF 112 (606)
T ss_pred CCCCeEEe-ehhhhHHHhccc---chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhc
Confidence 34677788 999999998864 468899999999999999999999999876 33 888899986 578999999
Q ss_pred CCCccceEEEecCC-eE---EEEEecC-CHHHHHHHHHHHh
Q 033098 84 EVKAMPTFLLMREG-AV---VDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 84 ~v~~~Pt~~~~~~g-~~---~~~~~~~-~~~~l~~~i~~~~ 119 (127)
+|.++|++.+|+.+ +. -....+. .+.++.+.+.+.+
T Consensus 113 ~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 113 SVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred CCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 99999999999433 11 1222333 3555555555443
No 111
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.39 E-value=3.5e-12 Score=77.22 Aligned_cols=84 Identities=21% Similarity=0.491 Sum_probs=57.8
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhc---CCCccceEEEe-cCCeEEEEEecCCH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL---EVKAMPTFLLM-REGAVVDKLVGANP 108 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~-~~g~~~~~~~~~~~ 108 (127)
..+..++.|..+||+.|+...|.|.++++..+++.+-.+.-|+++++..+| |...+|+++++ ++|+.+.+. |.-+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-gerP 118 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GERP 118 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ESS-
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cCCC
Confidence 556778889999999999999999999999888988888888888887776 67789999999 667888776 6677
Q ss_pred HHHHHHHHH
Q 033098 109 EEIRKRIDS 117 (127)
Q Consensus 109 ~~l~~~i~~ 117 (127)
..+++++.+
T Consensus 119 ~~~~~~~~~ 127 (129)
T PF14595_consen 119 KEVQELVDE 127 (129)
T ss_dssp HHHH-----
T ss_pred HHHhhcccc
Confidence 777766654
No 112
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.38 E-value=2.2e-12 Score=80.30 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=60.9
Q ss_pred cCCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCC--------h---hhHHHh-cC-------------
Q 033098 32 NQGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD--------V---KDVASK-LE------------- 84 (127)
Q Consensus 32 ~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~--------~---~~~~~~-~~------------- 84 (127)
.+|++++|.||++||+ |+...|.|.++++++ .++.++.|+.+. . ....++ ++
T Consensus 20 ~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~ 98 (152)
T cd00340 20 YKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNG 98 (152)
T ss_pred hCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccC
Confidence 3789999999999999 999999999999998 369999887532 1 122221 11
Q ss_pred ----------CCccc------------eEEEecCCeEEEEEecC-CHHHHHHH
Q 033098 85 ----------VKAMP------------TFLLMREGAVVDKLVGA-NPEEIRKR 114 (127)
Q Consensus 85 ----------v~~~P------------t~~~~~~g~~~~~~~~~-~~~~l~~~ 114 (127)
+.++| ++++.++|+++.++.|. +.+++++.
T Consensus 99 ~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 99 ENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 45555999999999988 77777653
No 113
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.2e-13 Score=84.73 Aligned_cols=96 Identities=22% Similarity=0.407 Sum_probs=79.9
Q ss_pred cCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCChhhHHHhcCCC
Q 033098 9 QNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEVK 86 (127)
Q Consensus 9 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~~~~~~~~~v~ 86 (127)
..++.+.-+++...++..+... +.+.++|.||+.|.+.|+.+.|.+.++..+| ++++|..||+...++.+.+|+|.
T Consensus 121 ~gpe~ikyf~~~q~~deel~rn--k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris 198 (265)
T KOG0914|consen 121 SGPETIKYFTNMQLEDEELDRN--KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRIS 198 (265)
T ss_pred CCchheeeecchhhHHHHhccC--CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeec
Confidence 3455666675666666655543 6788899999999999999999999999999 57999999999999999999874
Q ss_pred ------ccceEEEecCCeEEEEEecC
Q 033098 87 ------AMPTFLLMREGAVVDKLVGA 106 (127)
Q Consensus 87 ------~~Pt~~~~~~g~~~~~~~~~ 106 (127)
.+||+++|++|+.+.|....
T Consensus 199 ~s~~srQLPT~ilFq~gkE~~RrP~v 224 (265)
T KOG0914|consen 199 LSPGSRQLPTYILFQKGKEVSRRPDV 224 (265)
T ss_pred cCcccccCCeEEEEccchhhhcCccc
Confidence 58999999999988776544
No 114
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.33 E-value=1.4e-11 Score=67.14 Aligned_cols=69 Identities=22% Similarity=0.501 Sum_probs=54.6
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhh----HHHhcCCCccceEEEecCCeEEEEEecCCHHHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD----VASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRK 113 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~ 113 (127)
+..|+++||++|+...+.|++ .++.+..+|+++++. +.+.+|+.++|++++. |+. ..|.+++++.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 467999999999999888765 268888999987654 4567899999999884 654 44678888888
Q ss_pred HHH
Q 033098 114 RID 116 (127)
Q Consensus 114 ~i~ 116 (127)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 763
No 115
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.33 E-value=2e-11 Score=72.53 Aligned_cols=100 Identities=24% Similarity=0.437 Sum_probs=64.0
Q ss_pred ecChhhHHHHHHHhhcCCCcEEEEEeC-------CCChhhhhccHHHHHHHhhCC-CeEEEEEecCChh-------hHHH
Q 033098 17 VDSVESWETFVSQANNQGCPVVVHFTA-------IWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVK-------DVAS 81 (127)
Q Consensus 17 i~~~~~~~~~~~~~~~~~~~v~v~f~~-------~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~-------~~~~ 81 (127)
+..-+++.+.+.....++++++|+|++ +|||.|+...|.+++.....+ +..|+.+.+...+ ....
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 345577888887755577899999986 599999999999988887764 6898888876433 2333
Q ss_pred --hcCCCccceEEEecCCeEEEEEecCCHHHHHHHHH
Q 033098 82 --KLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRID 116 (127)
Q Consensus 82 --~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~ 116 (127)
.++++++||++-+..++.+....-.+.+.+..+++
T Consensus 82 ~p~~~l~~IPTLi~~~~~~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETGERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp --CC---SSSEEEECTSS-EEEHHHHH-HHHHHHHHH
T ss_pred cceeeeeecceEEEECCCCccchhhhccHHHHHHHhc
Confidence 58999999999997774332221125666666654
No 116
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.32 E-value=1.2e-11 Score=79.29 Aligned_cols=93 Identities=22% Similarity=0.309 Sum_probs=67.9
Q ss_pred HHhhcCCCcE-EEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEecCC--------hh---hH-HHh----------
Q 033098 28 SQANNQGCPV-VVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDVDD--------VK---DV-ASK---------- 82 (127)
Q Consensus 28 ~~~~~~~~~v-~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------~~---~~-~~~---------- 82 (127)
..+..+|+++ ++.+|++||++|+...|.|+++.+++. ++.++.|+++. .. .. .++
T Consensus 34 sLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d 113 (183)
T PTZ00256 34 QLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQK 113 (183)
T ss_pred eHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceE
Confidence 3333478865 456699999999999999999999883 69999997531 00 00 111
Q ss_pred --------------------------cCCCccce----EEEecCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 83 --------------------------LEVKAMPT----FLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 83 --------------------------~~v~~~Pt----~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
+++.++|+ +++.++|+++.++.|. +.+.+.+.|+++++
T Consensus 114 ~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 114 IEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred EecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13446784 7777999999999887 88889988888764
No 117
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.31 E-value=2.7e-11 Score=76.51 Aligned_cols=97 Identities=25% Similarity=0.312 Sum_probs=89.0
Q ss_pred hhhcCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCC
Q 033098 6 QEQQNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEV 85 (127)
Q Consensus 6 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v 85 (127)
.....-+...+|.+..+|-+.+. +...|+++||.+.-..|+.|..-|+.++..|.+.+|+.||+...|-++.+++|
T Consensus 60 ~~~~GhG~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~I 135 (211)
T KOG1672|consen 60 WLSKGHGEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNI 135 (211)
T ss_pred HHHcCCceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeee
Confidence 34566778889988999998887 45789999999999999999999999999999999999999999999999999
Q ss_pred CccceEEEecCCeEEEEEecC
Q 033098 86 KAMPTFLLMREGAVVDKLVGA 106 (127)
Q Consensus 86 ~~~Pt~~~~~~g~~~~~~~~~ 106 (127)
.-+|++.+|++|..+.+..|+
T Consensus 136 kVLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 136 KVLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eEeeeEEEEEcCEEEEEEeeH
Confidence 999999999999999988776
No 118
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1e-10 Score=68.91 Aligned_cols=106 Identities=19% Similarity=0.258 Sum_probs=85.9
Q ss_pred EEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCC-eEEEEEecCChhhHHHhcCCCccceEEE
Q 033098 15 VKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 93 (127)
.+++|.++.++.+... ..+.+++.|+..|.|.|.++.+.|.+++++..+ ..++-+|+++.+++.+.|++...|++++
T Consensus 6 p~L~s~~~VdqaI~~t--~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmf 83 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILST--EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMF 83 (142)
T ss_pred cccccHHHHHHHHhcc--cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEE
Confidence 4677889999998877 789999999999999999999999999999877 7888999999999999999999999877
Q ss_pred ecCCe-EEEEE--------ecC--CHHHHHHHHHHHhhhh
Q 033098 94 MREGA-VVDKL--------VGA--NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 94 ~~~g~-~~~~~--------~~~--~~~~l~~~i~~~~~~~ 122 (127)
|=+++ +.-.. .+. +++++.+.++-....+
T Consensus 84 Ffn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga 123 (142)
T KOG3414|consen 84 FFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGA 123 (142)
T ss_pred EEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhh
Confidence 74332 22222 122 6788888887765443
No 119
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.27 E-value=6.2e-11 Score=72.53 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=65.3
Q ss_pred CCCcEEEEEe-CCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh---------------------hhHHHhcCCCcc
Q 033098 33 QGCPVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------KDVASKLEVKAM 88 (127)
Q Consensus 33 ~~~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~---------------------~~~~~~~~v~~~ 88 (127)
++++++|.|| +.||+.|....+.|.++.+++ .++.++.|..+.. ..+.+.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 6899999999 589999999999999998877 4688888876543 356777888887
Q ss_pred ---------ceEEEe-cCCeEEEEEecC-CHHHHHHH
Q 033098 89 ---------PTFLLM-REGAVVDKLVGA-NPEEIRKR 114 (127)
Q Consensus 89 ---------Pt~~~~-~~g~~~~~~~~~-~~~~l~~~ 114 (127)
|+.+++ ++|++...+.|. ..+.+.+.
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 786666 789999999888 55655554
No 120
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.27 E-value=1.4e-10 Score=76.03 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=66.0
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC-----------hhhHHHhcCCCccceEEEe-cCC-eE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-----------VKDVASKLEVKAMPTFLLM-REG-AV 99 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~-~~g-~~ 99 (127)
.++.-+++||.+.|++|+.+.|.+..++++| ++.++.|++|. ++.+++++|+..+|++++. .++ +.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 5788899999999999999999999999999 78888888773 4678899999999998777 444 44
Q ss_pred EEEEecC-CHHHHHHH
Q 033098 100 VDKLVGA-NPEEIRKR 114 (127)
Q Consensus 100 ~~~~~~~-~~~~l~~~ 114 (127)
..-..|. +.++|.+-
T Consensus 198 ~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEeeecCCHHHHHHh
Confidence 4444466 77887654
No 121
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.25 E-value=2.6e-11 Score=74.61 Aligned_cols=70 Identities=27% Similarity=0.556 Sum_probs=57.1
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhC----CCeEEEEEecCCh-------------------------hhHHHhc
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAY----PDVLFLSVDVDDV-------------------------KDVASKL 83 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~----~~v~~~~vd~~~~-------------------------~~~~~~~ 83 (127)
.||.+.+||.|.||++|+.+-|.|.++++.. ..+.++.|+.|.. +++..+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 7899999999999999999999998887765 2366666665543 4678899
Q ss_pred CCCccceEEEe-cCCeEEEE
Q 033098 84 EVKAMPTFLLM-REGAVVDK 102 (127)
Q Consensus 84 ~v~~~Pt~~~~-~~g~~~~~ 102 (127)
++.++|++++. .+|..+..
T Consensus 112 ~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred ccCcCceeEEecCCCCEehH
Confidence 99999998888 78877754
No 122
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.25 E-value=1.5e-10 Score=63.92 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=58.0
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHH
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRID 116 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~ 116 (127)
.+++++|++|..+...++++...+ ++.+-.+|..+.+++ .+||+.++|++++ ||++.....-++.+++.+||+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEEEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEEEEecCCCHHHHHHHhC
Confidence 347888999999999999999998 588878888777777 9999999999977 788665422238899998875
No 123
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=99.23 E-value=4e-10 Score=65.31 Aligned_cols=95 Identities=22% Similarity=0.324 Sum_probs=70.6
Q ss_pred EEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCC-eEEEEEecCChh----hHHHhcCCCc-c
Q 033098 15 VKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVK----DVASKLEVKA-M 88 (127)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~----~~~~~~~v~~-~ 88 (127)
..+++.+++++++..+ .+++++++=.++.|+-+......+++..+..++ +.++.+|+-+.+ .++.+|||.. -
T Consensus 2 ~~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 4678999999999986 789999999999999999999999999888765 999999998876 4578899985 7
Q ss_pred ceEEEecCCeEEEEEecC--CHHHH
Q 033098 89 PTFLLMREGAVVDKLVGA--NPEEI 111 (127)
Q Consensus 89 Pt~~~~~~g~~~~~~~~~--~~~~l 111 (127)
|.+++++||+++...+.. +.+.|
T Consensus 80 PQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 80 PQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp SEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred CcEEEEECCEEEEECccccCCHHhc
Confidence 999999999999876644 55554
No 124
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.23 E-value=7.6e-11 Score=69.05 Aligned_cols=72 Identities=49% Similarity=0.863 Sum_probs=62.9
Q ss_pred CCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecC-ChhhHHHhcC--CCccceEEEecCCeEEEEEec
Q 033098 34 GCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVD-DVKDVASKLE--VKAMPTFLLMREGAVVDKLVG 105 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~~ 105 (127)
++++++.||++||++|+...|.+.++++++. .+.++.+|.. ..+.....|+ +..+|+++++.+|.......+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 7899999999999999999999999999986 5999999997 7889999999 999999998887765544444
No 125
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.23 E-value=1.4e-10 Score=71.31 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=64.1
Q ss_pred cCCCcEEEEEeCCC-ChhhhhccHHHHHHHhhCCCeEEEEEecCCh-----------------------hhHHHhcCCCc
Q 033098 32 NQGCPVVVHFTAIW-CMPSVAMNPLFEELASAYPDVLFLSVDVDDV-----------------------KDVASKLEVKA 87 (127)
Q Consensus 32 ~~~~~v~v~f~~~~-c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~v~~ 87 (127)
..+++++++||+.| |++|+...+.|.++.++++++.++.|+.+.. ..+.+.||+..
T Consensus 24 ~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 24 FAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred hCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 37899999999988 6999999999999999988899999887632 23456677653
Q ss_pred ------cceEEEe-cCCeEEEEEecC---CHHHHHHHH
Q 033098 88 ------MPTFLLM-REGAVVDKLVGA---NPEEIRKRI 115 (127)
Q Consensus 88 ------~Pt~~~~-~~g~~~~~~~~~---~~~~l~~~i 115 (127)
.|+.+++ ++|++.....+. ...++++.|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 5775555 799999888755 345555544
No 126
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.21 E-value=2.1e-10 Score=72.49 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=59.3
Q ss_pred cCCCcEEEEEeCCC-ChhhhhccHHHHHHHhhCCCeEEEEEecCCh-----------------------hhHHHhcCCCc
Q 033098 32 NQGCPVVVHFTAIW-CMPSVAMNPLFEELASAYPDVLFLSVDVDDV-----------------------KDVASKLEVKA 87 (127)
Q Consensus 32 ~~~~~v~v~f~~~~-c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~v~~ 87 (127)
.+|++++|+||+.| |+.|....+.|.++++++.++.++.|..|.. ..+++.||+..
T Consensus 42 ~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 42 FAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred hCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 37899999999999 9999999999999999887888888876542 25677888877
Q ss_pred cc---------eEEEe-cCCeEEEEEe
Q 033098 88 MP---------TFLLM-REGAVVDKLV 104 (127)
Q Consensus 88 ~P---------t~~~~-~~g~~~~~~~ 104 (127)
.| +.+++ ++|++...+.
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEE
Confidence 66 64444 8999998874
No 127
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.21 E-value=4.3e-10 Score=71.41 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=65.7
Q ss_pred CCCcEEEEEe-CCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh----------------------------hhHHH
Q 033098 33 QGCPVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV----------------------------KDVAS 81 (127)
Q Consensus 33 ~~~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~----------------------------~~~~~ 81 (127)
+|++++|+|| +.||+.|....+.|.++++++ .++.++.|..|.. ..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 6799999999 899999999999999999888 4688888876542 13455
Q ss_pred hcCCC------ccceEEEe-cCCeEEEEEecC-----CHHHHHHHHHHHh
Q 033098 82 KLEVK------AMPTFLLM-REGAVVDKLVGA-----NPEEIRKRIDSFV 119 (127)
Q Consensus 82 ~~~v~------~~Pt~~~~-~~g~~~~~~~~~-----~~~~l~~~i~~~~ 119 (127)
.||+. ..|+.+++ ++|++...+.+. +.+++.+.|+.+.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 67765 46675555 799999887543 4567777776654
No 128
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.20 E-value=1.4e-10 Score=63.91 Aligned_cols=70 Identities=13% Similarity=0.395 Sum_probs=51.3
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHh-----cCCCccceEEEecCCeEEEEEecCCHHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK-----LEVKAMPTFLLMREGAVVDKLVGANPEEIR 112 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~ 112 (127)
++.||++||++|+.+.+.|.++ ++.+-.+|+++.+..... ++..++|++ ++.+|..+. .++..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 5679999999999999988765 455667888877655544 388999997 467886554 45666666
Q ss_pred HHHH
Q 033098 113 KRID 116 (127)
Q Consensus 113 ~~i~ 116 (127)
+.|+
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 5553
No 129
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.5e-10 Score=67.85 Aligned_cols=87 Identities=16% Similarity=0.283 Sum_probs=70.7
Q ss_pred cCCCcEEEEEeCCCChhhhhccHHH---HHHHhhC-CCeEEEEEecCC----------------hhhHHHhcCCCccceE
Q 033098 32 NQGCPVVVHFTAIWCMPSVAMNPLF---EELASAY-PDVLFLSVDVDD----------------VKDVASKLEVKAMPTF 91 (127)
Q Consensus 32 ~~~~~v~v~f~~~~c~~C~~~~~~l---~~~~~~~-~~v~~~~vd~~~----------------~~~~~~~~~v~~~Pt~ 91 (127)
-.++..++.|-++.|++|.++...+ .++.+-. +++.++.+++.. ..++++.|+++++||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 3789999999999999999999887 3444433 568888888653 2489999999999999
Q ss_pred EEe-cCCeEEEEEecC-CHHHHHHHHHHH
Q 033098 92 LLM-REGAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 92 ~~~-~~g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
+++ ++|+-+....|. .++++...++-+
T Consensus 120 vFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 120 VFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred EEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 999 789999999898 888887766543
No 130
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.19 E-value=2e-10 Score=68.78 Aligned_cols=70 Identities=29% Similarity=0.538 Sum_probs=58.5
Q ss_pred cCCCcEEEEEeCC-CChhhhhccHHHHHHHhhC--CCeEEEEEecCCh---------------------hhHHHhcCCC-
Q 033098 32 NQGCPVVVHFTAI-WCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------KDVASKLEVK- 86 (127)
Q Consensus 32 ~~~~~v~v~f~~~-~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~---------------------~~~~~~~~v~- 86 (127)
..+++++|.||+. ||+.|+...+.|.++.+++ .++.++.|..+.. ..+.+.|++.
T Consensus 23 l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 23 LKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred HCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 3789999999999 9999999999999999887 3799999987653 3567778888
Q ss_pred -----ccceEEEe-cCCeEEE
Q 033098 87 -----AMPTFLLM-REGAVVD 101 (127)
Q Consensus 87 -----~~Pt~~~~-~~g~~~~ 101 (127)
.+|+++++ ++|++++
T Consensus 103 ~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTTSEESEEEEEEETTSBEEE
T ss_pred ccCCceEeEEEEECCCCEEEe
Confidence 88986666 7888765
No 131
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.17 E-value=1.1e-09 Score=73.12 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=70.0
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh-----------hhHHHhcCCCccceEEEe-cC-CeE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-----------KDVASKLEVKAMPTFLLM-RE-GAV 99 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-----------~~~~~~~~v~~~Pt~~~~-~~-g~~ 99 (127)
.++.-+++||...|++|+++.|.+..++++| |+.++.|++|.. ...++++|+..+|++++. .+ ++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 5678899999999999999999999999999 677777777754 347889999999997777 45 444
Q ss_pred EEEEecC-CHHHHHHHHHHHhhh
Q 033098 100 VDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 100 ~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
..-..|. +.++|.+-|..++..
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 4444466 889998877776554
No 132
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.14 E-value=3.8e-10 Score=72.17 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=37.7
Q ss_pred hhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecC
Q 033098 30 ANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVD 74 (127)
Q Consensus 30 ~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~ 74 (127)
+..+|++++|.|||+||+.|.. .+.|+++.++| .++.++.+.++
T Consensus 21 s~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 21 EKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred HHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 3347899999999999999974 88999999998 37999999874
No 133
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=99.13 E-value=7.4e-09 Score=61.83 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=80.3
Q ss_pred EEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCC-eEEEEEecCChhhHHHhcCCCccce-EE
Q 033098 15 VKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVKAMPT-FL 92 (127)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt-~~ 92 (127)
.++++..+.++++... .++.+++.|+..|.+.|.++.+.|.+++++.++ ..++.+|+++.|++.+.|.+. -|. ++
T Consensus 3 ~~L~s~~~VDqAI~~e--~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvm 79 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSE--EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVM 79 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEE
T ss_pred cccCccchHHHHHhcc--CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEE
Confidence 5678999999998877 899999999999999999999999999998866 888999999999999999999 664 55
Q ss_pred Ee-cCCeEEEEEe--------cC--CHHHHHHHHHHHhhhh
Q 033098 93 LM-REGAVVDKLV--------GA--NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 93 ~~-~~g~~~~~~~--------~~--~~~~l~~~i~~~~~~~ 122 (127)
+| ++..+.-.++ +. +.+++.+.++.....+
T Consensus 80 FF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyrga 120 (133)
T PF02966_consen 80 FFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYRGA 120 (133)
T ss_dssp EEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHHHH
T ss_pred EEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHHHh
Confidence 55 4433333322 11 5688888887765443
No 134
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.13 E-value=1.1e-09 Score=70.40 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=63.0
Q ss_pred CCCcEEEEEe-CCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh-------------------------hhHHHhcC
Q 033098 33 QGCPVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV-------------------------KDVASKLE 84 (127)
Q Consensus 33 ~~~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~-------------------------~~~~~~~~ 84 (127)
.|++++|+|| +.||+.|....+.|.++.+++ .++.++.|..|.. ..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 7899999999 999999999999999888887 4688887776542 24566788
Q ss_pred CC------ccceEEEe-cCCeEEEEEecC-----CHHHHHHHHHH
Q 033098 85 VK------AMPTFLLM-REGAVVDKLVGA-----NPEEIRKRIDS 117 (127)
Q Consensus 85 v~------~~Pt~~~~-~~g~~~~~~~~~-----~~~~l~~~i~~ 117 (127)
+. ..|+.+++ ++|++...+... +.+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 75 35865555 899988776432 45666666644
No 135
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.10 E-value=7.5e-10 Score=69.07 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=53.1
Q ss_pred HHHHHhhcCCCcEEEEEeCCCChhhhhccHH-H--HHHHhhC-CCeEEEEEecCChhhHHHhc--------CCCccceEE
Q 033098 25 TFVSQANNQGCPVVVHFTAIWCMPSVAMNPL-F--EELASAY-PDVLFLSVDVDDVKDVASKL--------EVKAMPTFL 92 (127)
Q Consensus 25 ~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~-l--~~~~~~~-~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~ 92 (127)
+.+..+..++|+++|.++.+||.+|..|... + .++++-. .++.-+.||.++.|++...| |..|.|+.+
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~v 107 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTV 107 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceE
Confidence 4455555589999999999999999999863 2 3444433 35788889999999988877 788999977
Q ss_pred Ee-cCCeEEEEEe
Q 033098 93 LM-REGAVVDKLV 104 (127)
Q Consensus 93 ~~-~~g~~~~~~~ 104 (127)
+. .+|+++....
T Consensus 108 fltPdg~p~~~~t 120 (163)
T PF03190_consen 108 FLTPDGKPFFGGT 120 (163)
T ss_dssp EE-TTS-EEEEES
T ss_pred EECCCCCeeeeee
Confidence 77 8999887544
No 136
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.09 E-value=7.6e-10 Score=57.95 Aligned_cols=60 Identities=33% Similarity=0.558 Sum_probs=50.6
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHH---hcCCCccceEEEecCC
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVAS---KLEVKAMPTFLLMREG 97 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g 97 (127)
++.||++||++|+.+.+.+.++....+++.+..++++....... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999884334679999999998766554 7899999999998766
No 137
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.09 E-value=2.6e-09 Score=66.52 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=58.1
Q ss_pred cCCCcEEEEEeCC-CChhhhhccHHHHHHHhhC--CCeEEEEEecCCh---------------------hhHHHhcCCCc
Q 033098 32 NQGCPVVVHFTAI-WCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------KDVASKLEVKA 87 (127)
Q Consensus 32 ~~~~~v~v~f~~~-~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~---------------------~~~~~~~~v~~ 87 (127)
.++++++|+||+. ||+.|....+.|.++.+++ .++.++.|..+.. ..+.+.||+..
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 3789999999975 7888999999998888877 4688988887643 24567788754
Q ss_pred c------------ce-EEEecCCeEEEEEecC
Q 033098 88 M------------PT-FLLMREGAVVDKLVGA 106 (127)
Q Consensus 88 ~------------Pt-~~~~~~g~~~~~~~~~ 106 (127)
. |+ +++.++|+++..+.|.
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~ 139 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKF 139 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCC
Confidence 3 55 4444899999999887
No 138
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=7.5e-10 Score=64.81 Aligned_cols=77 Identities=29% Similarity=0.482 Sum_probs=59.9
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeC--------CCChhhhhccHHHHHHHhhCC-CeEEEEEecCChh-------hHHHh
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTA--------IWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVK-------DVASK 82 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~--------~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~-------~~~~~ 82 (127)
--++|++.+.... +++.++++|++ +|||+|.+..|.+.+..+..+ ++.|+.+++.+.+ .+...
T Consensus 11 g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 11 GYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred hHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence 4456777776654 55568999987 699999999999988888664 7999999987643 34555
Q ss_pred cCC-CccceEEEecC
Q 033098 83 LEV-KAMPTFLLMRE 96 (127)
Q Consensus 83 ~~v-~~~Pt~~~~~~ 96 (127)
.++ .++||++-+++
T Consensus 90 ~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKR 104 (128)
T ss_pred CCceeecceeeEEcC
Confidence 666 99999999974
No 139
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.08 E-value=1.2e-09 Score=72.39 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=61.6
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC--------------------------------------
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD-------------------------------------- 74 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~-------------------------------------- 74 (127)
+++.+++.|+.+.||+|+++++.+.++.+. ++.+..+...
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 568889999999999999999999887653 4555443211
Q ss_pred ------ChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHHHHHHHH
Q 033098 75 ------DVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 75 ------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
++.++++++|+.++|+++ +.||+.+ .|. ..++|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 114678889999999997 7888766 476 889999998764
No 140
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=99.07 E-value=5.1e-09 Score=69.66 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=67.7
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC--h---------hhHHHhcCCCccceEEEe-cC-CeE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD--V---------KDVASKLEVKAMPTFLLM-RE-GAV 99 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~--~---------~~~~~~~~v~~~Pt~~~~-~~-g~~ 99 (127)
.++.-+++||.+.|++|.++.|.+..++++| ++.++.|++|. . .....++|+..+|++++. .+ ++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 5668899999999999999999999999999 66666666553 2 235678999999998777 34 455
Q ss_pred EEEEecC-CHHHHHHHHHHHhhh
Q 033098 100 VDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 100 ~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
..-..|. +.++|.+-|..+...
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 4444577 889998877766543
No 141
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.07 E-value=2.7e-09 Score=60.13 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=59.2
Q ss_pred EEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh----hHHHhcC--CCccceEEEecCCeEEEEEecCCHHH
Q 033098 37 VVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK----DVASKLE--VKAMPTFLLMREGAVVDKLVGANPEE 110 (127)
Q Consensus 37 v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~~~~~~~ 110 (127)
-++.|+.+||++|++....|+++..++.++.+..+|++..+ ++....+ ...+|++++ +|+.+. ..++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCTD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHHH
Confidence 36779999999999999999999987778899999988642 4554454 478999875 776543 4577
Q ss_pred HHHHHHHHhh
Q 033098 111 IRKRIDSFVQ 120 (127)
Q Consensus 111 l~~~i~~~~~ 120 (127)
+.++++..++
T Consensus 75 ~~~~~~~~~~ 84 (85)
T PRK11200 75 FEAYVKENLG 84 (85)
T ss_pred HHHHHHHhcc
Confidence 8888777653
No 142
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.06 E-value=1.1e-08 Score=60.97 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=76.4
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCC----CChhhhhcc--HHHHHHHhhCCCeEEEEEecCCh--hhHHHhcCCCccceEE
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAI----WCMPSVAMN--PLFEELASAYPDVLFLSVDVDDV--KDVASKLEVKAMPTFL 92 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~----~c~~C~~~~--~~l~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~ 92 (127)
..|.+.+..+..++|.++|+++++ ||..|+... |.+.++.+. ++.+...|++.. .+++..+++.++|++.
T Consensus 4 gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 4 GTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred CcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 357788888877999999999999 888886543 344444443 688888888754 4688899999999988
Q ss_pred Ee--cC--CeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 93 LM--RE--GAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 93 ~~--~~--g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
++ ++ ..++.+..|. +++++...|+....
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 77 23 3568888899 99999999988764
No 143
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.04 E-value=3.1e-09 Score=65.67 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=56.7
Q ss_pred CC-CcEEEEEe-CCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh-----------------------hhHHHhcCC
Q 033098 33 QG-CPVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV-----------------------KDVASKLEV 85 (127)
Q Consensus 33 ~~-~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~-----------------------~~~~~~~~v 85 (127)
.+ ++++|.|| ++||+.|....+.|.++.+++ .++.++.|..+.. ..+.+.||+
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 56 88888887 899999999999999998888 3688888876531 345667787
Q ss_pred C----ccc--eEEEe-cCCeEEEEEecCC
Q 033098 86 K----AMP--TFLLM-REGAVVDKLVGAN 107 (127)
Q Consensus 86 ~----~~P--t~~~~-~~g~~~~~~~~~~ 107 (127)
. ++| +.+++ ++|++...+.+..
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred ccccCCCccceEEEECCCCEEEEEEecCC
Confidence 6 333 54444 7999998887763
No 144
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.02 E-value=3.6e-09 Score=64.64 Aligned_cols=75 Identities=20% Similarity=0.160 Sum_probs=59.1
Q ss_pred CCCcEEEEEe-CCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh----------------------hhHHHhcCCCc
Q 033098 33 QGCPVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV----------------------KDVASKLEVKA 87 (127)
Q Consensus 33 ~~~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~----------------------~~~~~~~~v~~ 87 (127)
.+++++|+|| +.||+.|....+.|.++.+++ .++.|+.|..+.. ..+.+.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6899999999 789999999999999998887 4688888876542 24566777776
Q ss_pred cc---------eEE-EecCCeEEEEEecCC
Q 033098 88 MP---------TFL-LMREGAVVDKLVGAN 107 (127)
Q Consensus 88 ~P---------t~~-~~~~g~~~~~~~~~~ 107 (127)
.| +.+ +.++|+++..+.+..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 66 444 447899999887774
No 145
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.01 E-value=1.7e-10 Score=74.92 Aligned_cols=102 Identities=21% Similarity=0.433 Sum_probs=85.6
Q ss_pred cCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCChhhHHHhcCCC
Q 033098 9 QNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEVK 86 (127)
Q Consensus 9 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~~~~~~~~~v~ 86 (127)
...+.+..+ +.+++..+++ .-.++.|+++||+.|+...+.++.++.-- -+|.+..||++.++-+.-+|-+.
T Consensus 21 ~r~s~~~~~-~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vt 93 (248)
T KOG0913|consen 21 RRSSKLTRI-DEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVT 93 (248)
T ss_pred cccceeEEe-cccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEE
Confidence 344567777 9999998886 45788999999999999999999987654 26999999999999999999999
Q ss_pred ccceEEEecCCeEEEEEecC-CHHHHHHHHHHH
Q 033098 87 AMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 87 ~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
..||+...++|..- ++.|. +..++..++..-
T Consensus 94 aLptIYHvkDGeFr-rysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 94 ALPTIYHVKDGEFR-RYSGARDKNDFISFEEHR 125 (248)
T ss_pred ecceEEEeeccccc-cccCcccchhHHHHHHhh
Confidence 99999999999654 45566 899999888654
No 146
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.01 E-value=4e-09 Score=65.00 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=34.3
Q ss_pred CCcEEEE-EeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh
Q 033098 34 GCPVVVH-FTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV 76 (127)
Q Consensus 34 ~~~v~v~-f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~ 76 (127)
+++++|. |+++||+.|+...+.|.++.+++ .++.++.|..+..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 4555444 56999999999999999999887 4799998886643
No 147
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.99 E-value=1.1e-08 Score=65.81 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=66.1
Q ss_pred CCCcEEEEEe-CCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh-------------------------hhHHHhcC
Q 033098 33 QGCPVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV-------------------------KDVASKLE 84 (127)
Q Consensus 33 ~~~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~-------------------------~~~~~~~~ 84 (127)
.|++++++|| +.||+.|....+.|.+..+++ .++.++.|..|.. ..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 7889999999 999999999999999999888 4688888876642 35677788
Q ss_pred C----Ccc--ceEEEe-cCCeEEEEEec-----CCHHHHHHHHHHH
Q 033098 85 V----KAM--PTFLLM-REGAVVDKLVG-----ANPEEIRKRIDSF 118 (127)
Q Consensus 85 v----~~~--Pt~~~~-~~g~~~~~~~~-----~~~~~l~~~i~~~ 118 (127)
+ .++ |+.+++ ++|++...+.. .+.+++.+.|+.+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 7 355 775555 79998876543 2678888877655
No 148
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.96 E-value=4.4e-09 Score=64.44 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=36.9
Q ss_pred CCCcEEEEEeCCCChh-hhhccHHHHHHHhhCC-----CeEEEEEecC
Q 033098 33 QGCPVVVHFTAIWCMP-SVAMNPLFEELASAYP-----DVLFLSVDVD 74 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~-C~~~~~~l~~~~~~~~-----~v~~~~vd~~ 74 (127)
.+++++|.||++||++ |....+.|.++.+++. ++.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6899999999999998 9999999999988883 3888888765
No 149
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.96 E-value=1.2e-08 Score=66.32 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=64.8
Q ss_pred CCCcEEE-EEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh---------------------------hhHHHh
Q 033098 33 QGCPVVV-HFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------------KDVASK 82 (127)
Q Consensus 33 ~~~~v~v-~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~---------------------------~~~~~~ 82 (127)
+|+.++| .||+.||+.|....+.|.++.+++ .++.++.|.+|.. ..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 6776665 588999999999999999988887 3688888876632 245667
Q ss_pred cCCC------ccceEEEe-cCCeEEEEE----e-cCCHHHHHHHHHHHhh
Q 033098 83 LEVK------AMPTFLLM-REGAVVDKL----V-GANPEEIRKRIDSFVQ 120 (127)
Q Consensus 83 ~~v~------~~Pt~~~~-~~g~~~~~~----~-~~~~~~l~~~i~~~~~ 120 (127)
||+. .+|+.+++ ++|++.... . |.+.+++.+.|+.+..
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 7773 47886666 788887655 2 3377888888877643
No 150
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=8e-10 Score=71.44 Aligned_cols=103 Identities=26% Similarity=0.524 Sum_probs=86.3
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEE
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 93 (127)
+..+....+| +.+ +++..+++||++||..|.++...+..+++..+++.|+.++.++.++++..+.+...|.+++
T Consensus 3 v~~i~~~~~f--~~~----~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~ 76 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQ----KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVF 76 (227)
T ss_pred ceeehhHHHH--HHh----ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence 4556566666 222 6899999999999999999999999999888889999999999999999999999999999
Q ss_pred ecCCeEEEEEecCCHHHHHHHHHHHhhhh
Q 033098 94 MREGAVVDKLVGANPEEIRKRIDSFVQSI 122 (127)
Q Consensus 94 ~~~g~~~~~~~~~~~~~l~~~i~~~~~~~ 122 (127)
+..|..+.+..+..+..+...++.+....
T Consensus 77 ~~~~~~v~~l~~~~~~~~~~~~~~~~~~~ 105 (227)
T KOG0911|consen 77 FFLGEKVDRLSGADPPFLVSKVEKLAESG 105 (227)
T ss_pred eecchhhhhhhccCcHHHHHHHHHhhhhc
Confidence 99999998888886666665555554433
No 151
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.94 E-value=4.7e-09 Score=58.69 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=45.8
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh-----hHHHhcCCCccceEEEecCCeEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-----DVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
++.|+++||++|+.+.+.|+++.-. +.+.++.++.+.+. .+.+.+|..++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 4679999999999999999998722 24778888876543 2566679999999865 67554
No 152
>PRK15000 peroxidase; Provisional
Probab=98.93 E-value=2.6e-08 Score=64.75 Aligned_cols=86 Identities=17% Similarity=0.309 Sum_probs=65.5
Q ss_pred CCCcEEEEEeC-CCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh----------------------------hhHHH
Q 033098 33 QGCPVVVHFTA-IWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV----------------------------KDVAS 81 (127)
Q Consensus 33 ~~~~v~v~f~~-~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~----------------------------~~~~~ 81 (127)
+++.++++||. .||+.|....+.|.++++++ .++.++.|..|.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 57899999998 59999999999999999888 4788888887742 13455
Q ss_pred hcCCC------ccceEEEe-cCCeEEEEEecC-----CHHHHHHHHHHH
Q 033098 82 KLEVK------AMPTFLLM-REGAVVDKLVGA-----NPEEIRKRIDSF 118 (127)
Q Consensus 82 ~~~v~------~~Pt~~~~-~~g~~~~~~~~~-----~~~~l~~~i~~~ 118 (127)
.||+. .+|..+++ ++|++.....+. +.+++.+.++.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 67776 57875555 799988876553 567777777654
No 153
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.92 E-value=1.8e-08 Score=56.93 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=56.3
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh----hhHHHhcCC--CccceEEEecCCeEEEEEecCCHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV----KDVASKLEV--KAMPTFLLMREGAVVDKLVGANPEEI 111 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v--~~~Pt~~~~~~g~~~~~~~~~~~~~l 111 (127)
++.|+.+|||+|.++...|+++..+++++.+..+|++.. .++...+|- ..+|++++ +|+.+ ...++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i-----gG~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV-----GGCTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe-----cCHHHH
Confidence 567899999999999999999987766788888888743 345566664 78999966 66543 245777
Q ss_pred HHHHHHHh
Q 033098 112 RKRIDSFV 119 (127)
Q Consensus 112 ~~~i~~~~ 119 (127)
.+++++..
T Consensus 75 ~~~~~~~~ 82 (86)
T TIGR02183 75 EQLVKENF 82 (86)
T ss_pred HHHHHhcc
Confidence 77777654
No 154
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.92 E-value=6.2e-09 Score=66.99 Aligned_cols=114 Identities=15% Similarity=0.288 Sum_probs=91.9
Q ss_pred hhhhhhcCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHh
Q 033098 3 AAAQEQQNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK 82 (127)
Q Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~ 82 (127)
.+......-..|+++++..+|-+.+.... +...++|++|-+..+-|..+...+.-++.+||-++|+.+-... ....++
T Consensus 129 q~l~~gp~~~~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~ 206 (273)
T KOG3171|consen 129 QKLSFGPRYGFVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDR 206 (273)
T ss_pred HHhhcCCccceEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhh
Confidence 34444455668999999999999998643 4567799999999999999999999999999999999997654 456789
Q ss_pred cCCCccceEEEecCCeEEEEEecC--------CHHHHHHHHHHH
Q 033098 83 LEVKAMPTFLLMREGAVVDKLVGA--------NPEEIRKRIDSF 118 (127)
Q Consensus 83 ~~v~~~Pt~~~~~~g~~~~~~~~~--------~~~~l~~~i~~~ 118 (127)
|-.+.+|++++|++|..+..+... ..-+++.|++.+
T Consensus 207 F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 207 FSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred hcccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999999999999999988766432 345566666653
No 155
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.90 E-value=1.6e-08 Score=54.73 Aligned_cols=68 Identities=24% Similarity=0.419 Sum_probs=48.9
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhc----CCCccceEEEecCCeEEEEEecCCHHHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL----EVKAMPTFLLMREGAVVDKLVGANPEEIRK 113 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~ 113 (127)
++.|+++||++|..+...|.+. ++.+..++++..+.....+ +..++|++++ +|+ ...|.+.+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCHHHHHh
Confidence 5679999999999988887662 5777778887655444433 6789999976 443 334678777776
Q ss_pred HH
Q 033098 114 RI 115 (127)
Q Consensus 114 ~i 115 (127)
++
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 53
No 156
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.87 E-value=2.5e-08 Score=63.58 Aligned_cols=109 Identities=19% Similarity=0.326 Sum_probs=89.2
Q ss_pred hhhhcCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcC
Q 033098 5 AQEQQNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLE 84 (127)
Q Consensus 5 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~ 84 (127)
.+...+.+.|++| |..+|.+.+..+. .+-.|+|+.|...-+.|+.+...|++++.+||.++|+.+..+.. ...|.
T Consensus 84 ~~~k~kfG~V~~I-Sg~dyv~EVT~As-~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYP 158 (240)
T KOG3170|consen 84 TAEKAKFGEVFPI-SGPDYVKEVTKAS-EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYP 158 (240)
T ss_pred HHHHhcccceeec-cchHHHHHHHhcc-CccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCc
Confidence 4556788899999 8889999888875 77889999999999999999999999999999999999975542 45677
Q ss_pred CCccceEEEecCCeEEEEEec------C--CHHHHHHHHHHH
Q 033098 85 VKAMPTFLLMREGAVVDKLVG------A--NPEEIRKRIDSF 118 (127)
Q Consensus 85 v~~~Pt~~~~~~g~~~~~~~~------~--~~~~l~~~i~~~ 118 (127)
-...||+++|..|.+..++.| . +.+++..++-+.
T Consensus 159 e~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 159 ESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred ccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 788999999988876655543 3 567777776553
No 157
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.86 E-value=4.4e-08 Score=72.48 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=66.8
Q ss_pred CcE-EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHH
Q 033098 35 CPV-VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIR 112 (127)
Q Consensus 35 ~~v-~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~ 112 (127)
+++ +-.|.+++|++|......+++++...+++..-.+|....+++.++|++.++|++++ ||+.... |. +.+++.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~~~--G~~~~~~~~ 551 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQVYF--GKKTIEEML 551 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEEEe--eCCCHHHHH
Confidence 455 55668999999999999999999998899999999999999999999999999988 7776644 44 888888
Q ss_pred HHH
Q 033098 113 KRI 115 (127)
Q Consensus 113 ~~i 115 (127)
++|
T Consensus 552 ~~~ 554 (555)
T TIGR03143 552 ELI 554 (555)
T ss_pred Hhh
Confidence 876
No 158
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.83 E-value=3.1e-07 Score=58.46 Aligned_cols=106 Identities=20% Similarity=0.357 Sum_probs=81.5
Q ss_pred hhcCCCceEEecChhhHHHHHHHhhcCCCc-EEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcC
Q 033098 7 EQQNKSRVVKVDSVESWETFVSQANNQGCP-VVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLE 84 (127)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~ 84 (127)
.......+..+ |.+++.++.. .+.+ +++.|..........+...+.++++++. .+.|+.+|++..+++.+.+|
T Consensus 72 ~~~~~P~v~~~-t~~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~ 146 (184)
T PF13848_consen 72 KKNSFPLVPEL-TPENFEKLFS----SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFG 146 (184)
T ss_dssp HHHSSTSCEEE-STTHHHHHHS----TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTT
T ss_pred HHhcccccccc-chhhHHHHhc----CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcC
Confidence 33444556666 8888887776 4555 7777877778888999999999999985 49999999998899999999
Q ss_pred CC--ccceEEEec--CCeEEEEEecC-CHHHHHHHHHH
Q 033098 85 VK--AMPTFLLMR--EGAVVDKLVGA-NPEEIRKRIDS 117 (127)
Q Consensus 85 v~--~~Pt~~~~~--~g~~~~~~~~~-~~~~l~~~i~~ 117 (127)
+. .+|+++++. +++......+. +.+.|.+|+++
T Consensus 147 i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 147 IDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 98 899999884 44432222445 89999999874
No 159
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.81 E-value=2.9e-08 Score=64.27 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=54.7
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEe--cC------------------------------------
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVD--VD------------------------------------ 74 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd--~~------------------------------------ 74 (127)
.++..++.|+.+.|++|+++.+.+.+ ...++.+..+. ..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 46889999999999999999999877 12344443332 11
Q ss_pred -------ChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHHHHH
Q 033098 75 -------DVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 75 -------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i 115 (127)
++..+++++|+.++|+++ +.+|+.+ .|. +.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~---~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRVV---PGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeEe---cCCCCHHHHHhhC
Confidence 113567889999999997 7888764 365 677777654
No 160
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.80 E-value=5.8e-08 Score=65.16 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=58.5
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC--------------------------------------
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD-------------------------------------- 74 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~-------------------------------------- 74 (127)
+++.+++.|+.+.||+|+++++.+.++.+. .++.+..+...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 567889999999999999999999887665 34666555410
Q ss_pred ------------ChhhHHHhcCCCccceEEEec-CCeEEEEEecC-CHHHHHHHHH
Q 033098 75 ------------DVKDVASKLEVKAMPTFLLMR-EGAVVDKLVGA-NPEEIRKRID 116 (127)
Q Consensus 75 ------------~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~-~~~~l~~~i~ 116 (127)
++..+.+++|++++|++++-. +|.+ ....|. .+++|.+++.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~-~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL-QQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHhC
Confidence 012356779999999997763 4643 234466 7888888764
No 161
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.79 E-value=1.2e-07 Score=58.55 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=32.9
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEe
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVD 72 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd 72 (127)
..+++++.|+.++||+|+.+.+.+.++..+++++.+...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 4688999999999999999999999988777665555443
No 162
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.77 E-value=2.2e-07 Score=60.56 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=63.3
Q ss_pred CC-Cc-EEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh---------------------------hhHHH
Q 033098 33 QG-CP-VVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------------KDVAS 81 (127)
Q Consensus 33 ~~-~~-v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~---------------------------~~~~~ 81 (127)
.+ +. +++.|++.||+.|....+.|.++++++ .++.++.|.+|.. ..+++
T Consensus 23 ~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~ 102 (203)
T cd03016 23 LGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAK 102 (203)
T ss_pred cCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHH
Confidence 44 54 456788999999999999999999888 4788888887642 24566
Q ss_pred hcCCC----ccc-----eEEEecCCeEEEEEec-----CCHHHHHHHHHHHh
Q 033098 82 KLEVK----AMP-----TFLLMREGAVVDKLVG-----ANPEEIRKRIDSFV 119 (127)
Q Consensus 82 ~~~v~----~~P-----t~~~~~~g~~~~~~~~-----~~~~~l~~~i~~~~ 119 (127)
.||+. +.| +|++.++|++...+.+ .+.+++.+.|+.+-
T Consensus 103 ~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 103 LLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred HcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 78865 334 3555589998876643 26678888887653
No 163
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.77 E-value=8.1e-08 Score=50.45 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=42.8
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhH----HHhcCCCccceEEEecCCeE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDV----ASKLEVKAMPTFLLMREGAV 99 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~ 99 (127)
++.|+.+||++|+.....|++. ++.+-.+|++..++. .+..|..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 5679999999999999888553 688888888876433 33349999999987 6654
No 164
>PRK13189 peroxiredoxin; Provisional
Probab=98.75 E-value=2e-07 Score=61.50 Aligned_cols=86 Identities=16% Similarity=0.284 Sum_probs=62.1
Q ss_pred CCCcE-EEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh---------------------------hhHHHh
Q 033098 33 QGCPV-VVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------------KDVASK 82 (127)
Q Consensus 33 ~~~~v-~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~---------------------------~~~~~~ 82 (127)
.++.+ ++.|++.||+.|....+.|.++++++ .++.++.|.+|.. ..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 56755 45777999999999999999998888 4788888876642 235666
Q ss_pred cCCC-------ccceEEEe-cCCeEEEEEe-----cCCHHHHHHHHHHH
Q 033098 83 LEVK-------AMPTFLLM-REGAVVDKLV-----GANPEEIRKRIDSF 118 (127)
Q Consensus 83 ~~v~-------~~Pt~~~~-~~g~~~~~~~-----~~~~~~l~~~i~~~ 118 (127)
||+. .+|+.+++ ++|++..... +.+.+++...|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7764 35765555 7998876654 33677888888765
No 165
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.75 E-value=5.2e-07 Score=62.16 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=73.5
Q ss_pred CceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChh--hhhc---cHHHHHH-HhhC--CCeEEEEEecCChhhHHHhc
Q 033098 12 SRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMP--SVAM---NPLFEEL-ASAY--PDVLFLSVDVDDVKDVASKL 83 (127)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~--C~~~---~~~l~~~-~~~~--~~v~~~~vd~~~~~~~~~~~ 83 (127)
-.+..+ |..+|.+.+... ...+|+|+.+--.. .++. .+.+-++ ++-. .++.|+.||..+...+++++
T Consensus 34 DRVi~L-neKNfk~~lKky----d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKL 108 (383)
T PF01216_consen 34 DRVIDL-NEKNFKRALKKY----DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKL 108 (383)
T ss_dssp --CEEE--TTTHHHHHHH-----SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHH
T ss_pred cceEEc-chhHHHHHHHhh----cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhc
Confidence 457788 999999998854 78888888776322 2221 2322233 3323 58999999999999999999
Q ss_pred CCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhh
Q 033098 84 EVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 120 (127)
Q Consensus 84 ~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~ 120 (127)
|+...+++.+|++|+++...+-.+++.+..||..++.
T Consensus 109 gv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 109 GVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp T--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHS
T ss_pred CccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcc
Confidence 9999999999999999988744499999999999876
No 166
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.73 E-value=2.3e-07 Score=51.77 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=56.0
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHH---HhcCCCccceEEEecCCeEEEEEecCCHHHHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVA---SKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKR 114 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~ 114 (127)
+..|+.+||++|......|++ .++.|-.+|++++++.. ...|...+|++++ ++. ...|++++++.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHHHH
Confidence 567889999999999988865 37888899998776533 3457789999966 443 3448899999998
Q ss_pred HHHHhh
Q 033098 115 IDSFVQ 120 (127)
Q Consensus 115 i~~~~~ 120 (127)
+.....
T Consensus 73 ~~~~~~ 78 (81)
T PRK10329 73 HPAPHA 78 (81)
T ss_pred HHhhhh
Confidence 877654
No 167
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.73 E-value=3.1e-07 Score=60.32 Aligned_cols=86 Identities=16% Similarity=0.258 Sum_probs=64.2
Q ss_pred CCCcE-EEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh---------------------------hhHHHh
Q 033098 33 QGCPV-VVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------------KDVASK 82 (127)
Q Consensus 33 ~~~~v-~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~---------------------------~~~~~~ 82 (127)
.|+.+ ++.|++.||+.|....+.|.++.+++ .++.++.|.+|.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 56665 67888999999999999999999988 4789988887752 235666
Q ss_pred cCCC-------ccceEEEe-cCCeEEEEEe-----cCCHHHHHHHHHHH
Q 033098 83 LEVK-------AMPTFLLM-REGAVVDKLV-----GANPEEIRKRIDSF 118 (127)
Q Consensus 83 ~~v~-------~~Pt~~~~-~~g~~~~~~~-----~~~~~~l~~~i~~~ 118 (127)
||+. .+|+.+++ ++|++...+. +.+.+++.+.|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 7763 56876666 7898877653 22567887777665
No 168
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.73 E-value=2.2e-07 Score=68.33 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=67.3
Q ss_pred CCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHH
Q 033098 34 GCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIR 112 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~ 112 (127)
++.-+..|++++|++|......+++++...++|.+-.+|....+++..+|++.++|++++ ||.... .|. +.+++.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~~--~g~~~~~~~~ 191 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEFG--QGRMTLEEIL 191 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEEE--ecCCCHHHHH
Confidence 444588899999999999999999999998999999999999999999999999999976 665442 244 677777
Q ss_pred HHHHH
Q 033098 113 KRIDS 117 (127)
Q Consensus 113 ~~i~~ 117 (127)
+.+.+
T Consensus 192 ~~~~~ 196 (517)
T PRK15317 192 AKLDT 196 (517)
T ss_pred HHHhc
Confidence 77665
No 169
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.4e-07 Score=63.91 Aligned_cols=110 Identities=22% Similarity=0.450 Sum_probs=87.5
Q ss_pred cCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCC----CChhhhhccHHHHHHHhhC----C-----CeEEEEEecCC
Q 033098 9 QNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAI----WCMPSVAMNPLFEELASAY----P-----DVLFLSVDVDD 75 (127)
Q Consensus 9 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~----~c~~C~~~~~~l~~~~~~~----~-----~v~~~~vd~~~ 75 (127)
....++..+ +++.|...+... -++..+++.|.|. .|.-|.....++.-+++.+ + ++-|..||.++
T Consensus 37 ts~~~VI~~-n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e 114 (331)
T KOG2603|consen 37 TSESGVIRM-NDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE 114 (331)
T ss_pred cCCCCeEEe-cCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc
Confidence 678899999 999999998843 3667788888874 6999999999999998876 1 47799999999
Q ss_pred hhhHHHhcCCCccceEEEec--CCeEE------EEEecCCHHHHHHHHHHHhh
Q 033098 76 VKDVASKLEVKAMPTFLLMR--EGAVV------DKLVGANPEEIRKRIDSFVQ 120 (127)
Q Consensus 76 ~~~~~~~~~v~~~Pt~~~~~--~g~~~------~~~~~~~~~~l~~~i~~~~~ 120 (127)
.+++.+.++++.+|++++|+ .|+.. ....|...|.+.+|+++...
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 99999999999999999992 23222 12224467889999887644
No 170
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.71 E-value=3.5e-07 Score=60.10 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=62.5
Q ss_pred CCCcEEE-EEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCChh---------------------------hHHHh
Q 033098 33 QGCPVVV-HFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVK---------------------------DVASK 82 (127)
Q Consensus 33 ~~~~v~v-~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~~---------------------------~~~~~ 82 (127)
.|+.++| .|+++||+.|....+.|.++++++ .++.++.+.+|... .+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 5676655 778999999999999999999988 47889888877432 34556
Q ss_pred cCCC-------ccceEEEe-cCCeEEEEEecC-----CHHHHHHHHHHH
Q 033098 83 LEVK-------AMPTFLLM-REGAVVDKLVGA-----NPEEIRKRIDSF 118 (127)
Q Consensus 83 ~~v~-------~~Pt~~~~-~~g~~~~~~~~~-----~~~~l~~~i~~~ 118 (127)
||+. ..|..+++ ++|++...+.+. +.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7753 25665555 799888765322 677777777654
No 171
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.71 E-value=4.2e-07 Score=61.18 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=63.7
Q ss_pred CCCcEEEEEe-CCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh----------------------------hhHHH
Q 033098 33 QGCPVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV----------------------------KDVAS 81 (127)
Q Consensus 33 ~~~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~----------------------------~~~~~ 81 (127)
.++.++++|| +.||+.|....+.|.+..+++ .++.++.|..|.. ..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5677888888 899999999999999998888 4688888877642 24567
Q ss_pred hcCCC-----ccceEEEe-cCCeEEEEEec-----CCHHHHHHHHHHH
Q 033098 82 KLEVK-----AMPTFLLM-REGAVVDKLVG-----ANPEEIRKRIDSF 118 (127)
Q Consensus 82 ~~~v~-----~~Pt~~~~-~~g~~~~~~~~-----~~~~~l~~~i~~~ 118 (127)
.||+. ..|+.+++ ++|++...... .+.+++.+.|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 78874 47876565 79998876632 2567777766654
No 172
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.71 E-value=1.1e-07 Score=51.90 Aligned_cols=67 Identities=13% Similarity=0.385 Sum_probs=50.2
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhc---CCCccceEEEecCCeEEEEEecCCHHHHHHH
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL---EVKAMPTFLLMREGAVVDKLVGANPEEIRKR 114 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~ 114 (127)
..|+.++|++|+.....|++. ++.|-.+|+++++.....+ |..++|++++ +|.. ...|.++++|.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G~~~~~~~~~ 71 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSGFRPDKLKAL 71 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEeccCHHHHHhc
Confidence 468899999999999988752 7888888988877655544 8889999866 3431 3447788887753
No 173
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.69 E-value=3e-07 Score=59.71 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=61.3
Q ss_pred cCCCcEEEEEe-CCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh----------------------------hhHH
Q 033098 32 NQGCPVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV----------------------------KDVA 80 (127)
Q Consensus 32 ~~~~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~----------------------------~~~~ 80 (127)
..|+.++|+|| +.||+.|......|.++++++ .++.++.|+.|.. .+++
T Consensus 34 ~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 34 YKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred HCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 37889999999 488999998889999998888 3788888887632 2456
Q ss_pred HhcCCC------ccceEEEe-cCCeEEEEEecC-----CHHHHHHHHHHH
Q 033098 81 SKLEVK------AMPTFLLM-REGAVVDKLVGA-----NPEEIRKRIDSF 118 (127)
Q Consensus 81 ~~~~v~------~~Pt~~~~-~~g~~~~~~~~~-----~~~~l~~~i~~~ 118 (127)
+.||+. .+|..+++ ++|++.....+. +.+++.+.|+.+
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 677774 24665444 789888766542 345555555443
No 174
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.67 E-value=3.6e-07 Score=50.98 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=58.6
Q ss_pred EEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCC----eEEEEEecCCHHHHH
Q 033098 37 VVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREG----AVVDKLVGANPEEIR 112 (127)
Q Consensus 37 v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g----~~~~~~~~~~~~~l~ 112 (127)
.+++|+.+.|+-|..+...|.++.... .+.+-.+|+++++.+..+|+. .+|.+.+-..+ .... ....+.+.+.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~-~~~~d~~~L~ 77 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEEL-KWRFDEEQLR 77 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEE-ESSB-HHHHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCccccccccee-CCCCCHHHHH
Confidence 367899999999999999999987665 599999999999999999995 89998774311 2222 2234999999
Q ss_pred HHHH
Q 033098 113 KRID 116 (127)
Q Consensus 113 ~~i~ 116 (127)
+||+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 175
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.66 E-value=3.4e-07 Score=50.78 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=45.8
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh---hhHHHhcCCCccceEEEecCCeEE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV---KDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
+++.-++.|+.+||++|++....|++. ++.+-.+|+++. ..+....|...+|.+++ +|+.+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 345557789999999999999998753 577777787765 34455568899999976 67654
No 176
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.57 E-value=1.2e-06 Score=55.46 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=32.6
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSV 71 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~v 71 (127)
.++++++.|+...||+|+.+.+.+.++.++++ ++.|..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 46899999999999999999999999988874 4555433
No 177
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.57 E-value=1.7e-07 Score=54.25 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=39.6
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhh-------HHHhcCCCccceEEEecCCeEEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD-------VASKLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~g~~~~ 101 (127)
++.|..+|||+|.+....|.+. ++.+..+|++..++ +.+..|...+|.+++ +|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence 4569999999999999888765 45555666665432 233346789999855 675553
No 178
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.56 E-value=1.4e-06 Score=64.11 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=67.1
Q ss_pred CCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHH
Q 033098 34 GCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIR 112 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~ 112 (127)
++.-+-.|.++.|++|......+.+++...++|..-.+|....+++..+|++.++|++++ ||... +.|. +.+++.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~ 192 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELL 192 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHH
Confidence 445588899999999999999999999999999999999999999999999999999977 56544 2244 667776
Q ss_pred HHHHHH
Q 033098 113 KRIDSF 118 (127)
Q Consensus 113 ~~i~~~ 118 (127)
+.+.+.
T Consensus 193 ~~l~~~ 198 (515)
T TIGR03140 193 EKLEET 198 (515)
T ss_pred HHHhhc
Confidence 666544
No 179
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.55 E-value=2e-06 Score=53.66 Aligned_cols=80 Identities=28% Similarity=0.413 Sum_probs=60.9
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhC---CCeEEEEEecCCh---------------------------------
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDV--------------------------------- 76 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~--------------------------------- 76 (127)
..+++|+.|+...||+|+.+.+.+.++.+++ +++.|...+.-..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 5578899999999999999999998888887 3588877764110
Q ss_pred -----------------------------------hhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHHHHHHH
Q 033098 77 -----------------------------------KDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDS 117 (127)
Q Consensus 77 -----------------------------------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~ 117 (127)
.....++|+.++||+++ ||+.+ .+. +.+++.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 12345678999999988 88775 344 89999998875
No 180
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.54 E-value=5.2e-07 Score=50.13 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=43.1
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh-----hHHHhcCCCccceEEEecCCeEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-----DVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
++.|+++|||+|+.+...|+++.. ...++.++.+... .+.+..|..++|++++ +|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 467999999999999999999765 3566677766542 3445668899999754 66554
No 181
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.53 E-value=1.7e-06 Score=56.57 Aligned_cols=40 Identities=15% Similarity=0.433 Sum_probs=31.9
Q ss_pred CCCcEEEEEeCCCChhhhhccHHH---HHHHhhCC-CeEEEEEe
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLF---EELASAYP-DVLFLSVD 72 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l---~~~~~~~~-~v~~~~vd 72 (127)
.+++.|+.|++..||+|..+.+.+ ..+.+.++ ++.|..+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 457889999999999999999876 77888774 56665544
No 182
>PHA03050 glutaredoxin; Provisional
Probab=98.52 E-value=6.2e-07 Score=52.73 Aligned_cols=60 Identities=10% Similarity=0.128 Sum_probs=42.1
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC---h----hhHHHhcCCCccceEEEecCCeEEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD---V----KDVASKLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~----~~~~~~~~v~~~Pt~~~~~~g~~~~ 101 (127)
++.|..+|||+|++....|++..-..+.+. .+|+++ . ..+.+..|-..+|++++ +|+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~--~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYE--IVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcE--EEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence 566999999999999999988754433344 444443 2 23455568889999966 676654
No 183
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.52 E-value=1.6e-06 Score=47.13 Aligned_cols=66 Identities=12% Similarity=0.268 Sum_probs=47.0
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhh---HHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD---VASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKR 114 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~ 114 (127)
++.|..+||++|.+....|++. ++.+..+|++++.. +....|...+|.+++ +|+.+. +.+++.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig-----g~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG-----GSDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe-----CHHHHHHH
Confidence 5678999999999998888753 57777777776542 334458889999865 666542 35666665
Q ss_pred H
Q 033098 115 I 115 (127)
Q Consensus 115 i 115 (127)
+
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
No 184
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.45 E-value=5.1e-06 Score=61.73 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=80.3
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEe-cCCeE
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLM-REGAV 99 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~ 99 (127)
+++.+.+..- .+...++.|+.+.|..|..+...|++++...+.+.+...|..++.+..++|++...|++.++ .+|..
T Consensus 355 ~~l~~~~~~l--~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~ 432 (555)
T TIGR03143 355 QQLVGIFGRL--ENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNY 432 (555)
T ss_pred HHHHHHHHhc--CCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcc
Confidence 3455556543 56667888989999999999999999998777899988898888999999999999999998 45532
Q ss_pred -EEEEecC-CHHHHHHHHHHHhhhhc
Q 033098 100 -VDKLVGA-NPEEIRKRIDSFVQSIR 123 (127)
Q Consensus 100 -~~~~~~~-~~~~l~~~i~~~~~~~~ 123 (127)
--++.|. ...++..||..++..+.
T Consensus 433 ~~i~f~g~P~G~Ef~s~i~~i~~~~~ 458 (555)
T TIGR03143 433 TGLKFHGVPSGHELNSFILALYNAAG 458 (555)
T ss_pred cceEEEecCccHhHHHHHHHHHHhcC
Confidence 2344466 88999999999876654
No 185
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.43 E-value=1.7e-06 Score=46.44 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=42.4
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhH----HHhcCCCccceEEEecCCeEEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDV----ASKLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 101 (127)
++.|+++||++|+.....|.+. ++.+..+|++.+++. ....|...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-----GIEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 4678999999999999998876 367778888776543 33346778898755 776554
No 186
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.43 E-value=9.9e-07 Score=48.80 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=41.6
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHh----cCCCccceEEEecCCeEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK----LEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~Pt~~~~~~g~~~ 100 (127)
+..|+.+||++|......|++. ++.+-.+|++.+++..+. .|..++|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 3568899999999999999864 566777777776544433 47788999866 66554
No 187
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.41 E-value=2.2e-06 Score=46.81 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=41.7
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHH----HhcCCC-ccceEEEecCCeEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVA----SKLEVK-AMPTFLLMREGAVV 100 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~-~~Pt~~~~~~g~~~ 100 (127)
++.|+.++|++|......|++. ++.|-.+|++.+++.. +..|.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 4678899999999999988763 6777788887765443 335666 8998865 66554
No 188
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.40 E-value=5.3e-06 Score=49.04 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=70.3
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhh---CC-CeEEEEEecCChhhHHHhcCCCc--cceEE
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASA---YP-DVLFLSVDVDDVKDVASKLEVKA--MPTFL 92 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~---~~-~v~~~~vd~~~~~~~~~~~~v~~--~Pt~~ 92 (127)
+.++...... .+.+..+.|+ .-..-....+.+.+++++ ++ ++.|+.+|.+......+.||+++ +|.+.
T Consensus 5 t~e~~~~~~~----~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 5 TFENAEELTE----EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred ccccHHHHhc----CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 6667666665 4566666666 233346788889999999 84 59999999999888999999997 89988
Q ss_pred EecCCe--EEEEEecC-CHHHHHHHHHHHhh
Q 033098 93 LMREGA--VVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 93 ~~~~g~--~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
+..... ......+. +.+.|.+|+++++.
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 874322 22112233 88999999999875
No 189
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.40 E-value=2.5e-06 Score=46.53 Aligned_cols=57 Identities=12% Similarity=0.364 Sum_probs=43.4
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhh----HHHhcCCCccceEEEecCCeEEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD----VASKLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 101 (127)
++.|+.++|++|++....|++. ++.+-.+|+++++. +.+..+-..+|++++ +|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 4668899999999999988873 67777888887654 444557788999966 666553
No 190
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.35 E-value=1.9e-05 Score=47.91 Aligned_cols=105 Identities=11% Similarity=0.216 Sum_probs=72.5
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCCC---Chh-h-hhccHHHHHHHhhC-CC-eEEEEEecCChhhHHHhcCC
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAIW---CMP-S-VAMNPLFEELASAY-PD-VLFLSVDVDDVKDVASKLEV 85 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~---c~~-C-~~~~~~l~~~~~~~-~~-v~~~~vd~~~~~~~~~~~~v 85 (127)
.++++++.+.++..-. ++..-+|.| -|. |.. + ......|.++++++ ++ +.|+.+|.++...+.+.||+
T Consensus 3 ~~~~l~~~~~~~~~C~----~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETCE----EKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI 77 (130)
T ss_pred ceEEecCHHHHHhhcc----CCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC
Confidence 5667766666554443 334445555 442 222 3 45677889999999 45 99999999999889999998
Q ss_pred C--ccceEEEecCCeEEEE-EecC-CHHHHHHHHHHHhhhh
Q 033098 86 K--AMPTFLLMREGAVVDK-LVGA-NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 86 ~--~~Pt~~~~~~g~~~~~-~~~~-~~~~l~~~i~~~~~~~ 122 (127)
. ++|+++++...+.... +.+. +.+.+.+|+++++...
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred CccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 5 4999988843321222 3344 8999999999997654
No 191
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.34 E-value=2.7e-05 Score=45.53 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=65.9
Q ss_pred CCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhh---hhccHHHHHHHhhCCC-eEEEEEecCChhhHHHhcCCC
Q 033098 11 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPS---VAMNPLFEELASAYPD-VLFLSVDVDDVKDVASKLEVK 86 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C---~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~v~ 86 (127)
..+...+ +.++++..+. .+...+ .|++..|..+ ....=.+-++.+.+++ +....++-+....+..+||+.
T Consensus 8 ~~g~~~v-d~~~ld~~l~----~~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~ 81 (107)
T PF07449_consen 8 RHGWPRV-DADTLDAFLA----APGDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVR 81 (107)
T ss_dssp T-TEEEE--CCCHHHHHH----CCSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-T
T ss_pred hcCCeee-chhhHHHHHh----CCCcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCc
Confidence 4466677 6888888877 344444 4555555444 4444478888888864 777777867778999999999
Q ss_pred ccceEEEecCCeEEEEEecC-CHH
Q 033098 87 AMPTFLLMREGAVVDKLVGA-NPE 109 (127)
Q Consensus 87 ~~Pt~~~~~~g~~~~~~~~~-~~~ 109 (127)
..|+++++++|+.+....|. +-+
T Consensus 82 ~~PaLvf~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 82 RWPALVFFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp SSSEEEEEETTEEEEEEESSSTHH
T ss_pred cCCeEEEEECCEEEEEecCeeccc
Confidence 99999999999999988877 443
No 192
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.32 E-value=7.7e-06 Score=47.18 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=42.6
Q ss_pred CCcEEEEEe----CCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHH----HhcCCCccceEEEecCCeEEE
Q 033098 34 GCPVVVHFT----AIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVA----SKLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 34 ~~~v~v~f~----~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~ 101 (127)
+.+++|+-. .+|||+|.+....|.+. ++.|..+|++++++.. +..|...+|.+++ +|+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iG 79 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVG 79 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 345555443 28999999999988774 5677788887665443 3456778999876 676543
No 193
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.4e-05 Score=49.85 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=67.5
Q ss_pred HHHhhcCCCcEEEEEe-CCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh---------------------hhHHHh
Q 033098 27 VSQANNQGCPVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV---------------------KDVASK 82 (127)
Q Consensus 27 ~~~~~~~~~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~---------------------~~~~~~ 82 (127)
+..+...++++|++|| ..++|-|....-.+++...++ .+..++.|..|.. ..+++.
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ 102 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEA 102 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHH
Confidence 4444458899999999 788999988888888887777 3788888886642 467788
Q ss_pred cCCCc------------cc-eEEEecCCeEEEEEecC----CHHHHHHHHHHH
Q 033098 83 LEVKA------------MP-TFLLMREGAVVDKLVGA----NPEEIRKRIDSF 118 (127)
Q Consensus 83 ~~v~~------------~P-t~~~~~~g~~~~~~~~~----~~~~l~~~i~~~ 118 (127)
||+.. .+ ||++.++|++...+... ..+++.+.++++
T Consensus 103 ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 103 YGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred hCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 88743 12 57777999998877544 346777777664
No 194
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.23 E-value=1.3e-05 Score=52.96 Aligned_cols=110 Identities=26% Similarity=0.433 Sum_probs=75.5
Q ss_pred hhcCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCC-eEEEEEecCCh---------
Q 033098 7 EQQNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPD-VLFLSVDVDDV--------- 76 (127)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~--------- 76 (127)
...+.++++++ +......+...+ ..++|.|+.|++-.||+-+.-...+++++++|.+ +.|+.|-+.+.
T Consensus 77 ~~APns~vv~l-~g~~~~~ildf~-~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~ 154 (237)
T PF00837_consen 77 GPAPNSPVVTL-DGQRSCRILDFA-KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFG 154 (237)
T ss_pred CCCCCCceEee-CCCcceeHHHhc-cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCC
Confidence 44677788888 555434444443 3789999999999999999999999999999965 56776654321
Q ss_pred ---------hhH------HHhc---C-----------------CCccce-EEEecCCeEEEEEe-cC---CHHHHHHHHH
Q 033098 77 ---------KDV------ASKL---E-----------------VKAMPT-FLLMREGAVVDKLV-GA---NPEEIRKRID 116 (127)
Q Consensus 77 ---------~~~------~~~~---~-----------------v~~~Pt-~~~~~~g~~~~~~~-~~---~~~~l~~~i~ 116 (127)
+.+ ++.+ . ....|. ++++++|+++.... |+ +.+++++|++
T Consensus 155 ~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~ 234 (237)
T PF00837_consen 155 NNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLE 234 (237)
T ss_pred CCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHH
Confidence 111 1110 0 124564 66668999887654 22 7899999998
Q ss_pred HH
Q 033098 117 SF 118 (127)
Q Consensus 117 ~~ 118 (127)
++
T Consensus 235 ~~ 236 (237)
T PF00837_consen 235 KY 236 (237)
T ss_pred hc
Confidence 74
No 195
>PRK10824 glutaredoxin-4; Provisional
Probab=98.21 E-value=1e-05 Score=48.00 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=40.0
Q ss_pred CcEEEEEeC----CCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHH----hcCCCccceEEEecCCeEEE
Q 033098 35 CPVVVHFTA----IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVAS----KLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 35 ~~v~v~f~~----~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~ 101 (127)
.+|+|+--. ||||+|++....|.+. ++.+..+|++.++++.. .-|-..+|.+++ +|+-+.
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 455554333 6999999999998886 34455566666554433 336678899877 776664
No 196
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.7e-05 Score=44.07 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=40.0
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh-----hHHHhc-CCCccceEEEecCCe
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-----DVASKL-EVKAMPTFLLMREGA 98 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-----~~~~~~-~v~~~Pt~~~~~~g~ 98 (127)
++.|..++||+|.+....|.+. ++.|..++++..+ +..+.- |...+|++++ +|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence 4668899999999999888843 6777777776654 233333 7899999977 555
No 197
>PRK10638 glutaredoxin 3; Provisional
Probab=98.19 E-value=1.2e-05 Score=44.95 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=42.0
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhH----HHhcCCCccceEEEecCCeEEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDV----ASKLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 101 (127)
++.|..+||++|++....|++. ++.+..+|++.+++. .+..|...+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5568899999999999988874 566777788766533 34457788998865 676554
No 198
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.17 E-value=5.3e-05 Score=43.31 Aligned_cols=92 Identities=26% Similarity=0.230 Sum_probs=65.3
Q ss_pred EEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceEEE
Q 033098 15 VKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 93 (127)
..+.+.+++++.+. .+++++|-|+..++. .....+.++++.+. .+.|+.+. +..+...+++.. |++++
T Consensus 2 ~~i~s~~~l~~~~~----~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l 70 (97)
T cd02981 2 KELTSKEELEKFLD----KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVL 70 (97)
T ss_pred eecCCHHHHHHHhc----cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEE
Confidence 45667777777655 568888999998887 46677888888884 68887776 456777777654 88888
Q ss_pred ecCC-eEEEEEecC-CHHHHHHHHHH
Q 033098 94 MREG-AVVDKLVGA-NPEEIRKRIDS 117 (127)
Q Consensus 94 ~~~g-~~~~~~~~~-~~~~l~~~i~~ 117 (127)
++.. .....+.|. +.++|.+||..
T Consensus 71 ~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 71 FKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred eCCcccCCccCCCCCCHHHHHHHHHh
Confidence 8542 222334454 67899999864
No 199
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.15 E-value=2e-05 Score=44.76 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=41.4
Q ss_pred CCcEEEEEeC----CCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhH----HHhcCCCccceEEEecCCeEE
Q 033098 34 GCPVVVHFTA----IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDV----ASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 34 ~~~v~v~f~~----~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
+.+++|+-.+ +||++|.+....|++. ++.|-.+|++.++++ .+..|-..+|.+++ +|+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 4556554332 7999999999888775 466777777766544 34457788999855 67654
No 200
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.12 E-value=3.3e-05 Score=45.61 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=55.6
Q ss_pred CChhhhhccHHHHHHHhhCC--CeEEEEEecCChhhHHHhcCCCc----cceEEEec-CCeEEEEEecC-CHHHHHHHHH
Q 033098 45 WCMPSVAMNPLFEELASAYP--DVLFLSVDVDDVKDVASKLEVKA----MPTFLLMR-EGAVVDKLVGA-NPEEIRKRID 116 (127)
Q Consensus 45 ~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~-~g~~~~~~~~~-~~~~l~~~i~ 116 (127)
.-..-....+.+.+++++++ ++.|+.+|.++.....+.||+.+ .|.+.+.. +++........ +.+.|.+|++
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHH
Confidence 34445678889999999997 59999999998878889999984 99988874 33211111234 7789999988
Q ss_pred HH
Q 033098 117 SF 118 (127)
Q Consensus 117 ~~ 118 (127)
++
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 75
No 201
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=98.04 E-value=2.8e-05 Score=43.95 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=42.2
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhC-CCeEEEEEecC--Ch------------------------------hhHHHhcC
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVD--DV------------------------------KDVASKLE 84 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~-~~v~~~~vd~~--~~------------------------------~~~~~~~~ 84 (127)
+.+|+.+.|++|..+.+.+.++.... .++.+...... .. ......+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46799999999999999999986444 35666555432 21 23456789
Q ss_pred CCccceEEEec
Q 033098 85 VKAMPTFLLMR 95 (127)
Q Consensus 85 v~~~Pt~~~~~ 95 (127)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998854
No 202
>PTZ00062 glutaredoxin; Provisional
Probab=97.87 E-value=0.00016 Score=47.18 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=37.1
Q ss_pred CCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHh----cCCCccceEEEecCCeEEE
Q 033098 44 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK----LEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 44 ~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~Pt~~~~~~g~~~~ 101 (127)
|+|++|++....|++. ++.|..+|+++++++.+. .|-..+|.+++ +|+.+.
T Consensus 126 p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~IG 180 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELIG 180 (204)
T ss_pred CCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 7999999998888864 577778888876654333 36677898876 676653
No 203
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00025 Score=53.23 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=57.9
Q ss_pred HHHHhhcCCCcEEEEEeCCCChhhhhccHHH---HHHHhhC-CCeEEEEEecCChhhHHHhcC--------CCccceEEE
Q 033098 26 FVSQANNQGCPVVVHFTAIWCMPSVAMNPLF---EELASAY-PDVLFLSVDVDDVKDVASKLE--------VKAMPTFLL 93 (127)
Q Consensus 26 ~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l---~~~~~~~-~~v~~~~vd~~~~~~~~~~~~--------v~~~Pt~~~ 93 (127)
.+..+...+||+++-+..+||.+|..|..+= .++++-. .+++-++||-++.|++-+.|. -.++|-.++
T Consensus 35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVf 114 (667)
T COG1331 35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVF 114 (667)
T ss_pred HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEE
Confidence 4455555899999999999999999998642 3444433 368888899888887766653 568997555
Q ss_pred e-cCCeEEEEEe
Q 033098 94 M-REGAVVDKLV 104 (127)
Q Consensus 94 ~-~~g~~~~~~~ 104 (127)
. ++|++.....
T Consensus 115 LTPd~kPFfagT 126 (667)
T COG1331 115 LTPDGKPFFAGT 126 (667)
T ss_pred ECCCCceeeeee
Confidence 5 9999886543
No 204
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.69 E-value=0.00011 Score=52.86 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=42.1
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhh---HHHh---------cCCCccceEEEecCCeEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD---VASK---------LEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~---~~~~---------~~v~~~Pt~~~~~~g~~~ 100 (127)
|+.|..+|||+|.+....|.+. ++.|-.+|+++.+. +..+ .|...+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 5679999999999999888774 68888888887653 2222 36788999977 56544
No 205
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00037 Score=43.11 Aligned_cols=93 Identities=24% Similarity=0.348 Sum_probs=66.6
Q ss_pred HHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh--------hh---HH-HhcCC-------
Q 033098 27 VSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV--------KD---VA-SKLEV------- 85 (127)
Q Consensus 27 ~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~--------~~---~~-~~~~v------- 85 (127)
+.....+|++++|.-.|+-|+..- ....|+.+.++| .++.++...+... .+ .| ..||+
T Consensus 18 ~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~K 96 (162)
T COG0386 18 VSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSK 96 (162)
T ss_pred ccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeE
Confidence 333445899999999999999876 445788888888 4788888887642 11 11 12332
Q ss_pred -------------------------Ccc----ceEEEecCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 86 -------------------------KAM----PTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 86 -------------------------~~~----Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
..+ --|++.++|+++.|+... .++++...|+++++
T Consensus 97 i~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 97 IDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred EeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 111 137777999999999877 88999999998875
No 206
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.54 E-value=0.0018 Score=41.49 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=28.2
Q ss_pred EEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEE
Q 033098 37 VVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLS 70 (127)
Q Consensus 37 v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~ 70 (127)
+|.+|+..-||+|....+.|.++.+.++++.+-.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~ 34 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEW 34 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 4678999999999999999999998885555443
No 207
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0014 Score=43.71 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=28.8
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSV 71 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~v 71 (127)
.++.+++.|....|++|+...+.+.+.....+++.+...
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~ 121 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLR 121 (244)
T ss_pred CCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEE
Confidence 347888999999999998888888886666654444333
No 208
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.45 E-value=0.0021 Score=36.98 Aligned_cols=97 Identities=13% Similarity=0.204 Sum_probs=67.6
Q ss_pred EEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEecCC--hhhHHHhcCCC----c
Q 033098 15 VKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVDVDD--VKDVASKLEVK----A 87 (127)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~--~~~~~~~~~v~----~ 87 (127)
..|.+..+|.+++.. ...|++.|..+.- .-......+.++++... .=.++.|||.+ ...+|+++.+. .
T Consensus 4 e~i~d~KdfKKLLRT----r~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 4 EDISDHKDFKKLLRT----RNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred ccccchHHHHHHHhh----cCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 456677788888874 4566666665443 33334447788887774 46777888876 67899999988 4
Q ss_pred cc-eEEEecCCeEEEEEecC-CHHHHHHHHH
Q 033098 88 MP-TFLLMREGAVVDKLVGA-NPEEIRKRID 116 (127)
Q Consensus 88 ~P-t~~~~~~g~~~~~~~~~-~~~~l~~~i~ 116 (127)
-| .+..|++|.-...+.-. +...+.+|++
T Consensus 79 ~~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 79 KPVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred CcchhhcccCCCccccccchhhHHHHHHHhh
Confidence 44 37778999877776655 6677777764
No 209
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0014 Score=38.20 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=40.1
Q ss_pred CCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh-hHHH----hcCCCccceEEEecCCeEE
Q 033098 34 GCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-DVAS----KLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~~~~----~~~v~~~Pt~~~~~~g~~~ 100 (127)
..+++ .|..+||++|..+...|.++ -....++.+|-+.+. ++.+ .-|-..+|.+++ +|+-+
T Consensus 13 ~~~VV-ifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 13 ENPVV-IFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred cCCEE-EEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 34554 48999999999988777771 134666666665443 3322 234568999877 77766
No 210
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=97.42 E-value=0.0019 Score=42.35 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=63.9
Q ss_pred HHHHHHhhcCCCcEEEEEeCCCChh-hhhccHHHHHHHhhC-----CCeEEEEEecCCh---------------------
Q 033098 24 ETFVSQANNQGCPVVVHFTAIWCMP-SVAMNPLFEELASAY-----PDVLFLSVDVDDV--------------------- 76 (127)
Q Consensus 24 ~~~~~~~~~~~~~v~v~f~~~~c~~-C~~~~~~l~~~~~~~-----~~v~~~~vd~~~~--------------------- 76 (127)
.+.+.....+|++++|+|.-+.||. |-.....|..+.++. .++.++.|.+|..
T Consensus 57 G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ 136 (207)
T COG1999 57 GKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIG 136 (207)
T ss_pred CCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeee
Confidence 3334444458999999999999987 988888777766655 2455554444421
Q ss_pred --------hhHHHhcCCCc--cc-------------eEEEe-cCCeEEEEEecC-CHHHHHHHHHHHhhh
Q 033098 77 --------KDVASKLEVKA--MP-------------TFLLM-REGAVVDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 77 --------~~~~~~~~v~~--~P-------------t~~~~-~~g~~~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
.++++.|++.. +| .++++ .+|+....+.+. .++++.+.++.++..
T Consensus 137 ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 137 LTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred eeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 23445555442 11 23333 789988887766 778999988887753
No 211
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.41 E-value=0.0087 Score=35.77 Aligned_cols=100 Identities=16% Similarity=0.287 Sum_probs=65.8
Q ss_pred CceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHH-hhC---CCeEEEEEecC-----ChhhHHHh
Q 033098 12 SRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELA-SAY---PDVLFLSVDVD-----DVKDVASK 82 (127)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~-~~~---~~v~~~~vd~~-----~~~~~~~~ 82 (127)
.+.+.+ +.-+|++.+. +-+.++|.|=... |+- .-+..+.+++ +.. +++.++.|.+. +|.++.++
T Consensus 4 ~G~v~L-D~~tFdKvi~----kf~~~LVKFD~ay-PyG-eKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laer 76 (126)
T PF07912_consen 4 KGCVPL-DELTFDKVIP----KFKYVLVKFDVAY-PYG-EKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAER 76 (126)
T ss_dssp TTSEEE-STTHHHHHGG----GSSEEEEEEEESS---C-HHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHH
T ss_pred Cceeec-cceehhheec----cCceEEEEEeccC-CCc-chHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHH
Confidence 355677 7778999998 4589999886422 221 2344566666 332 57999998765 47899999
Q ss_pred cCCC--ccceEEEec-CCeEEEEE--ecC-CHHHHHHHHHHH
Q 033098 83 LEVK--AMPTFLLMR-EGAVVDKL--VGA-NPEEIRKRIDSF 118 (127)
Q Consensus 83 ~~v~--~~Pt~~~~~-~g~~~~~~--~~~-~~~~l~~~i~~~ 118 (127)
|++. .+|.+++|. +....-++ .+. +.+.|++|+.+.
T Consensus 77 y~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 77 YKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp TT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred hCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 9994 589999885 44333333 343 889999999875
No 212
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0022 Score=40.20 Aligned_cols=112 Identities=19% Similarity=0.325 Sum_probs=77.4
Q ss_pred cCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh--------hh
Q 033098 9 QNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV--------KD 78 (127)
Q Consensus 9 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~--------~~ 78 (127)
.....++.++-.+.-.+.+.....+|++++|.=-|+.|+.-..-...|..+.++| .++.++...|... .+
T Consensus 9 ~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 9 DEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 3444555553333333556666679999999999999999998888999999998 3688888877531 11
Q ss_pred ----HHHhcCC-------------C------------------ccc----eEEEecCCeEEEEEecC-CHHHHHHHHHHH
Q 033098 79 ----VASKLEV-------------K------------------AMP----TFLLMREGAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 79 ----~~~~~~v-------------~------------------~~P----t~~~~~~g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
+..+|+. . .+. -|++.++|.++.|+... ++.+++.-|+++
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~l 168 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKL 168 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHH
Confidence 2223332 0 111 36777999999999766 777777778777
Q ss_pred hh
Q 033098 119 VQ 120 (127)
Q Consensus 119 ~~ 120 (127)
+.
T Consensus 169 L~ 170 (171)
T KOG1651|consen 169 LA 170 (171)
T ss_pred hc
Confidence 64
No 213
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.27 E-value=0.0011 Score=41.09 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=40.0
Q ss_pred EEEeCC------CChhhhhccHHHHHHHhhCCCeEEEEEecCChhh----HHHhcCC----CccceEEEecCCeEEE
Q 033098 39 VHFTAI------WCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKD----VASKLEV----KAMPTFLLMREGAVVD 101 (127)
Q Consensus 39 v~f~~~------~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v----~~~Pt~~~~~~g~~~~ 101 (127)
+.|+++ +|++|..+...|+.+ +|.|-.+|++.+++ +.+.++. ..+|.+++ +|+.+.
T Consensus 3 vlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 3 VLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 445555 899999999888774 67888889877654 4444454 67898877 676554
No 214
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.25 E-value=0.01 Score=34.36 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=61.5
Q ss_pred eEEecChhhHHHHHH-HhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC-CCeEEEEEecCChhhHHHhcCCCccceE
Q 033098 14 VVKVDSVESWETFVS-QANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAMPTF 91 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~-~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~ 91 (127)
+..|.+.+++++++. . +..++|-|+..--. .....+.++++.+ .++.|+... +..+...+++. .|.+
T Consensus 2 v~~i~~~~~~e~~~~~~----~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i 70 (102)
T cd03066 2 VEIINSERELQAFENIE----DDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEV 70 (102)
T ss_pred ceEcCCHHHHHHHhccc----CCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcE
Confidence 466778888888775 3 35666666655333 3555678888887 568886544 44667777765 6888
Q ss_pred EEecC-CeEEEEE-ecC-CHHHHHHHHHHH
Q 033098 92 LLMRE-GAVVDKL-VGA-NPEEIRKRIDSF 118 (127)
Q Consensus 92 ~~~~~-g~~~~~~-~~~-~~~~l~~~i~~~ 118 (127)
+++++ ......+ .|. +.+.|.+||...
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 88854 2222234 445 889999999754
No 215
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=97.23 E-value=0.012 Score=33.66 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=56.2
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeE-
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAV- 99 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~- 99 (127)
+++...+..- .+...++.|.... .+|..+...+++++...+.+.+-..+.+. ..|++.+..+|+.
T Consensus 8 ~qL~~~f~~l--~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~ 73 (94)
T cd02974 8 QQLKAYLERL--ENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDT 73 (94)
T ss_pred HHHHHHHHhC--CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcc
Confidence 3444555432 5555566666655 99999999999999887777775544322 4799988866532
Q ss_pred EEEEecC-CHHHHHHHHHHH
Q 033098 100 VDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 100 ~~~~~~~-~~~~l~~~i~~~ 118 (127)
--++.|. ...++..+|..+
T Consensus 74 gIrF~GiP~GhEf~Slilai 93 (94)
T cd02974 74 GIRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred cEEEEecCCchhHHHHHHHh
Confidence 1344455 888998888754
No 216
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.13 E-value=0.0024 Score=39.89 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=32.7
Q ss_pred CCCcEEEEEe-CCCChhhhhc-cHHHHHHHhhC--CCe-EEEEEecCC
Q 033098 33 QGCPVVVHFT-AIWCMPSVAM-NPLFEELASAY--PDV-LFLSVDVDD 75 (127)
Q Consensus 33 ~~~~v~v~f~-~~~c~~C~~~-~~~l~~~~~~~--~~v-~~~~vd~~~ 75 (127)
.+++++++|| ..||+.|... .+.+.+..+++ .++ .++.|..|.
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 4566666666 8999999998 88888888777 366 577777654
No 217
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.11 E-value=0.0035 Score=40.03 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=25.1
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCC-CeEEEEEe
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYP-DVLFLSVD 72 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~-~v~~~~vd 72 (127)
+|..|.|++|-...|.+.++..+++ .+.+-.+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence 6899999999999999999999995 36554443
No 218
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.08 E-value=0.018 Score=33.40 Aligned_cols=91 Identities=22% Similarity=0.238 Sum_probs=61.0
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC-CCeEEEEEecCChhhHHHhcCCCccceEE
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAMPTFL 92 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 92 (127)
+..+.+.+++++.+. .++.++|-|+..--. .....+.++++.+ .++.|+... ...+...+++ .|+++
T Consensus 2 ~~~i~s~~~l~~f~~----~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~iv 69 (104)
T cd03069 2 SVELRTEAEFEKFLS----DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVV 69 (104)
T ss_pred ccccCCHHHHHHHhc----cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceE
Confidence 356667777877776 456777777765444 3556777888887 578886654 4566788888 67777
Q ss_pred Eec---------CCeEEEEEecC-CHHHHHHHHHHH
Q 033098 93 LMR---------EGAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 93 ~~~---------~g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
+|+ .+.. .+.|. +.++|.+||...
T Consensus 70 l~~p~~~~~k~de~~~--~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 70 LFRPPRLSNKFEDSSV--KFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EEechhhhcccCcccc--cccCcCCHHHHHHHHHhh
Confidence 772 2322 23454 788999998753
No 219
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.82 E-value=0.012 Score=37.22 Aligned_cols=63 Identities=29% Similarity=0.366 Sum_probs=48.5
Q ss_pred ccHHHHHHHhhCC-CeEEEEEecCChhhHHHhcCCCccceEEEecC--CeEEEEEec--CCHHHHHHHHHHHh
Q 033098 52 MNPLFEELASAYP-DVLFLSVDVDDVKDVASKLEVKAMPTFLLMRE--GAVVDKLVG--ANPEEIRKRIDSFV 119 (127)
Q Consensus 52 ~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~~--~~~~~l~~~i~~~~ 119 (127)
....+.++++.+. ++.|+.+. ++++++.+++.. |+++++++ ++... +.+ .+.++|.+||....
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~-y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVV-YDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEE-ESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCcee-cccccCCHHHHHHHHHHhc
Confidence 4456788888885 69999887 677899999999 99999966 33333 444 48999999998864
No 220
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=96.82 E-value=0.01 Score=39.92 Aligned_cols=95 Identities=25% Similarity=0.332 Sum_probs=62.1
Q ss_pred HHHhhcCCCcEEEEEeCCCChh-hhhccHHHHHHHhhC---CCe----EEEEEecCCh----------------------
Q 033098 27 VSQANNQGCPVVVHFTAIWCMP-SVAMNPLFEELASAY---PDV----LFLSVDVDDV---------------------- 76 (127)
Q Consensus 27 ~~~~~~~~~~v~v~f~~~~c~~-C~~~~~~l~~~~~~~---~~v----~~~~vd~~~~---------------------- 76 (127)
+.+....|+.+++||.-+.||. |-.....|..+.++. +++ .|+.+|-...
T Consensus 132 ~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT 211 (280)
T KOG2792|consen 132 VTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGT 211 (280)
T ss_pred ecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCC
Confidence 4444558999999999999987 877776666555543 232 5777775432
Q ss_pred ----hhHHHhcCCCc-c-c-----------eEEEe---cCCeEEEEEecC-CHHHHHHHHHHHhhh
Q 033098 77 ----KDVASKLEVKA-M-P-----------TFLLM---REGAVVDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 77 ----~~~~~~~~v~~-~-P-----------t~~~~---~~g~~~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
..+++.|-|.- . | ++++| .+|+.+..+... +++++.+-|.+.+.+
T Consensus 212 ~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 212 TEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 23455554431 1 2 33333 788888877555 889998888777643
No 221
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.71 E-value=0.029 Score=30.58 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=42.6
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh----hhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV----KDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRK 113 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~ 113 (127)
+..++.++|++|++..-.|++. ++.|-.++++.. +++.+.-+...+|+++.-.+|..+ .+...|.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l-----~es~~I~~ 71 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM-----FESADIVK 71 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE-----EcHHHHHH
Confidence 3457788999999988777775 343433444432 334343455679998543344332 25677777
Q ss_pred HHHH
Q 033098 114 RIDS 117 (127)
Q Consensus 114 ~i~~ 117 (127)
+|.+
T Consensus 72 yL~~ 75 (77)
T cd03041 72 YLFK 75 (77)
T ss_pred HHHH
Confidence 7765
No 222
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0064 Score=33.04 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=38.7
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh--------------h--hHHHhcCCCccceEEEecCCeEEE
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV--------------K--DVASKLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~--------------~--~~~~~~~v~~~Pt~~~~~~g~~~~ 101 (127)
+.|++..||.|..+.+.|+++. +.+-.|++... + +-.+..|.-++|.+.. .+|+++-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEEE
Confidence 5699999999999998888874 44445554421 1 2245567789999855 5665553
No 223
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=96.61 E-value=0.04 Score=29.82 Aligned_cols=71 Identities=11% Similarity=0.251 Sum_probs=44.0
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC--hhhHHHhcCCCccceEEEec--CCeEEEEEecCCHHHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD--VKDVASKLEVKAMPTFLLMR--EGAVVDKLVGANPEEIRK 113 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~~~~~~~l~~ 113 (127)
+..|+.+.|++|++..-.|... ++.+-.++.+. .+++ ..-+...+|+++.-. +|..+. +...|.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE-----cHHHHHH
Confidence 3457889999999999777765 33333334332 2333 334556799987652 243332 5677778
Q ss_pred HHHHHh
Q 033098 114 RIDSFV 119 (127)
Q Consensus 114 ~i~~~~ 119 (127)
+|++.+
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 887765
No 224
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.54 E-value=0.013 Score=31.77 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=48.3
Q ss_pred EEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCChhhHHHhcCCCccceEEE
Q 033098 37 VVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 37 v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 93 (127)
.+..|-+...+.++.....+.++.+++ ..+.+-.||+.++|+++..+++-.+||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 455566777788999999999998887 358999999999999999999999999754
No 225
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.44 E-value=0.081 Score=39.36 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=60.9
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCe-E
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGA-V 99 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~-~ 99 (127)
.++.+++..- .+...++.|.. .|..|..+...+++++..-+++.+...+.+. ...|++.+.++|. .
T Consensus 8 ~~l~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~ 74 (515)
T TIGR03140 8 AQLKSYLASL--ENPVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADT 74 (515)
T ss_pred HHHHHHHHhc--CCCEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCccc
Confidence 3445555432 44444555555 7999999999999999887777775544222 3469998887664 2
Q ss_pred EEEEecC-CHHHHHHHHHHHhhhhc
Q 033098 100 VDKLVGA-NPEEIRKRIDSFVQSIR 123 (127)
Q Consensus 100 ~~~~~~~-~~~~l~~~i~~~~~~~~ 123 (127)
--++.|. ...++..||..++..+.
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~~~~~ 99 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAILQVGG 99 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHHHhcC
Confidence 2344465 88999999998876553
No 226
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.38 E-value=0.0017 Score=44.60 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=65.0
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEe-cCChhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVD-VDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEI 111 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l 111 (127)
+..++-..||+.||+..+...|.+.-....++.+....++ ...-+.+..+||+.+.|++.+....-........+-..+
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l~sL 154 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDLASL 154 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeeccccchhhcccccHHHH
Confidence 3568889999999999999999988777777655544443 223467889999999999877654444444433477888
Q ss_pred HHHHHHHhh
Q 033098 112 RKRIDSFVQ 120 (127)
Q Consensus 112 ~~~i~~~~~ 120 (127)
.++..++.+
T Consensus 155 v~fy~~i~~ 163 (319)
T KOG2640|consen 155 VNFYTEITP 163 (319)
T ss_pred HHHHHhhcc
Confidence 888887765
No 227
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.37 E-value=0.11 Score=38.61 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=60.0
Q ss_pred hhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeE-
Q 033098 21 ESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAV- 99 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~- 99 (127)
+++..++.. -.+++-+.++...|..|..+...+++++..-+++.+-..+.+ ...|++.+..+|.-
T Consensus 8 ~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~ 73 (517)
T PRK15317 8 TQLKQYLEL---LERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDT 73 (517)
T ss_pred HHHHHHHHh---CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccc
Confidence 344555543 334554545555899999999999999988777776543321 34799888866532
Q ss_pred EEEEecC-CHHHHHHHHHHHhhhhc
Q 033098 100 VDKLVGA-NPEEIRKRIDSFVQSIR 123 (127)
Q Consensus 100 ~~~~~~~-~~~~l~~~i~~~~~~~~ 123 (127)
--++.|. ...++..||..++..+.
T Consensus 74 ~i~f~g~P~g~Ef~s~i~~i~~~~~ 98 (517)
T PRK15317 74 GVRFAGIPMGHEFTSLVLALLQVGG 98 (517)
T ss_pred eEEEEecCccHHHHHHHHHHHHhcC
Confidence 2344466 88999999998876443
No 228
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.25 E-value=0.1 Score=30.52 Aligned_cols=94 Identities=10% Similarity=0.140 Sum_probs=58.2
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC-CCeEEEEEecCChhhHHHhcCCCccceEE
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY-PDVLFLSVDVDDVKDVASKLEVKAMPTFL 92 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 92 (127)
+..|.+.+++++.+.. .++.++|-|+...-+ .....+.++++.+ .++.|+... +..+..++++.. |.++
T Consensus 2 v~~i~s~~ele~f~~~---~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vv 71 (107)
T cd03068 2 SKQLQTLKQVQEFLRD---GDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLV 71 (107)
T ss_pred ceEcCCHHHHHHHHhc---CCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceE
Confidence 5677788888887753 226777777765443 3556678888888 568886654 346677888765 4455
Q ss_pred Ee---------cCCeEEEEEecCC-HHHHHHHHHH
Q 033098 93 LM---------REGAVVDKLVGAN-PEEIRKRIDS 117 (127)
Q Consensus 93 ~~---------~~g~~~~~~~~~~-~~~l~~~i~~ 117 (127)
++ ..+.........+ .++|.+||++
T Consensus 72 l~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 72 VFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred EECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 55 2334443322133 3448888875
No 229
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.12 Score=33.41 Aligned_cols=86 Identities=27% Similarity=0.360 Sum_probs=57.3
Q ss_pred CCCcEEEEEe-CCCChhhhhccHHHHHHHhhC--CCeEEEEEecCCh----------------------------hhHHH
Q 033098 33 QGCPVVVHFT-AIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDV----------------------------KDVAS 81 (127)
Q Consensus 33 ~~~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~----------------------------~~~~~ 81 (127)
.++.++++|| +..-+-|-.....+.+.++++ .++.++.+.+|.. .++++
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~ 111 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIAR 111 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHH
Confidence 4577777777 455566666777777777766 4788888887653 36677
Q ss_pred hcCCCc----cc---eEEEecCCeEEEEEe-----cCCHHHHHHHHHHH
Q 033098 82 KLEVKA----MP---TFLLMREGAVVDKLV-----GANPEEIRKRIDSF 118 (127)
Q Consensus 82 ~~~v~~----~P---t~~~~~~g~~~~~~~-----~~~~~~l~~~i~~~ 118 (127)
.||+-. .. +|++.++|.+..... |.+.+++...++.+
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred HcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 777643 11 577778887665443 33778888777665
No 230
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=96.14 E-value=0.025 Score=30.25 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=37.5
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC-hhhHHHhcCCCccceEEEecCCeEE
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-VKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
..|+.++|++|++..-.|++..-. +.+..+|... .+++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 357889999999998777765433 4445555433 345555556778999954 346544
No 231
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=96.13 E-value=0.12 Score=30.25 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC---CCeEEEEEecCChhhHH----HhcCCC-ccce
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDVKDVA----SKLEVK-AMPT 90 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~~~~~----~~~~v~-~~Pt 90 (127)
.++++-...... -+..-++.|--+..+....|.+.++++++++ +++.|+.||-|+.|-+. +.|+|. .-|.
T Consensus 7 ~~~~m~e~wedd--~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 7 KPENMFETWEDD--LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred cHHHHHHhhhcc--cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 445555555544 3456678899999999999999999999988 57999999999886553 456654 3477
Q ss_pred EEEe--c--CCeEEEEE---ecCCHHHHHHHHHHHh
Q 033098 91 FLLM--R--EGAVVDKL---VGANPEEIRKRIDSFV 119 (127)
Q Consensus 91 ~~~~--~--~g~~~~~~---~~~~~~~l~~~i~~~~ 119 (127)
+=+. . ++.=.... .-.+.++++.||+.++
T Consensus 85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred eeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 5444 2 23222211 1247899999998764
No 232
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.13 Score=33.45 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=33.8
Q ss_pred hHHHhcCCCccceEEEecCCeEEEEEec--C-CHHHHHHHHHHHhh
Q 033098 78 DVASKLEVKAMPTFLLMREGAVVDKLVG--A-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 78 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~~--~-~~~~l~~~i~~~~~ 120 (127)
.+++++|+.++||+++-.||+..--..| . +.+.+..++.+.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 4678899999999999999987765555 3 77888888877653
No 233
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=96.08 E-value=0.16 Score=31.16 Aligned_cols=97 Identities=11% Similarity=0.168 Sum_probs=66.2
Q ss_pred hhHHHHHHHh----hcCCCcEEEEEeCCCChh----hhhc--cHHHHHHHhhCCCeEEEEEecCChh-------------
Q 033098 21 ESWETFVSQA----NNQGCPVVVHFTAIWCMP----SVAM--NPLFEELASAYPDVLFLSVDVDDVK------------- 77 (127)
Q Consensus 21 ~~~~~~~~~~----~~~~~~v~v~f~~~~c~~----C~~~--~~~l~~~~~~~~~v~~~~vd~~~~~------------- 77 (127)
..+.+.++.+ ....|+.+||..++.... |+.. .+.+.++.+ .++.+..-|++...
T Consensus 4 Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~ 81 (136)
T cd02990 4 GSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHF 81 (136)
T ss_pred CcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhh
Confidence 3566777776 667899999999987744 4443 223333433 36888888877642
Q ss_pred -----hHHHhcCCCccceEEEe-cCC---eEEEEEecC-CHHHHHHHHHHHh
Q 033098 78 -----DVASKLEVKAMPTFLLM-REG---AVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 78 -----~~~~~~~v~~~Pt~~~~-~~g---~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
...+.++...+|.+.+. +.. .++.+..|. +++++...+...+
T Consensus 82 g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 82 GSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred hHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 23455678999997776 222 677888888 8999988877654
No 234
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.07 E-value=0.23 Score=33.00 Aligned_cols=41 Identities=17% Similarity=0.457 Sum_probs=31.1
Q ss_pred HHHhcCCCccceEEEecCCeEEEEEecC-CHHHHHHHHHHHhhhhc
Q 033098 79 VASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQSIR 123 (127)
Q Consensus 79 ~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~~~ 123 (127)
.+++.||+++|+|++ +|+.. ..|. .++.+...|+++++..+
T Consensus 176 ~A~e~gI~gVP~fv~--d~~~~--V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGKYA--VSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHCCCccCceEEE--cCcEe--ecCCCCHHHHHHHHHHHHhccc
Confidence 466789999999988 44333 2366 88999999999987665
No 235
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=96.04 E-value=0.024 Score=31.86 Aligned_cols=60 Identities=17% Similarity=0.062 Sum_probs=50.4
Q ss_pred CcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCChhhHHHhcCCCccceEEEe
Q 033098 35 CPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEVKAMPTFLLM 94 (127)
Q Consensus 35 ~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 94 (127)
..++=.|.+...+.++.....+.++.+.+ +.+.+-.||+.++|+++..+.+-.+||++=.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~ 64 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI 64 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc
Confidence 34566677888899999999999998877 3488889999999999999999999997544
No 236
>PRK09301 circadian clock protein KaiB; Provisional
Probab=96.02 E-value=0.024 Score=32.84 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=60.3
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC--CH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA--NP 108 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~--~~ 108 (127)
++..++=.|.+...+.++.....+.++.+.+ +.+.+-.||+.++|+++..+.+-.+||++=.- -.+..+..|- +.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDlsd~ 82 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDLSDR 82 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeecccccH
Confidence 3456777788888999999999999998876 34888899999999999999999999965432 3334444444 55
Q ss_pred HHHHH
Q 033098 109 EEIRK 113 (127)
Q Consensus 109 ~~l~~ 113 (127)
+.+..
T Consensus 83 ~kVL~ 87 (103)
T PRK09301 83 EKVLI 87 (103)
T ss_pred HHHHH
Confidence 55543
No 237
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.01 E-value=0.0071 Score=35.17 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=41.9
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh----hhHHHhcCCCccceE-EEecCCeEEEE-----EecCCH
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV----KDVASKLEVKAMPTF-LLMREGAVVDK-----LVGANP 108 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~----~~~~~~~~v~~~Pt~-~~~~~g~~~~~-----~~~~~~ 108 (127)
..|+.++|++|++....|++. ++.|-.+|+.+. .++..-++-.+.+.- ++-.+|..... ..+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~ 76 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSD 76 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCH
Confidence 468899999999998877773 566667776543 233333333333221 12233332221 123466
Q ss_pred HHHHHHHHHH
Q 033098 109 EEIRKRIDSF 118 (127)
Q Consensus 109 ~~l~~~i~~~ 118 (127)
+++.+++.+.
T Consensus 77 ~e~~~~l~~~ 86 (105)
T cd02977 77 EEALELMAEH 86 (105)
T ss_pred HHHHHHHHhC
Confidence 7776666554
No 238
>PHA03075 glutaredoxin-like protein; Provisional
Probab=96.01 E-value=0.012 Score=34.77 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=26.8
Q ss_pred CcEEEEEeCCCChhhhhccHHHHHHHhhC
Q 033098 35 CPVVVHFTAIWCMPSVAMNPLFEELASAY 63 (127)
Q Consensus 35 ~~v~v~f~~~~c~~C~~~~~~l~~~~~~~ 63 (127)
|.+++.|+-|.|+-|+.....+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 57899999999999999999999998887
No 239
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=95.97 E-value=0.1 Score=28.15 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=48.8
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh-hhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHH
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-KDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSF 118 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~ 118 (127)
+++.++|++|++..-.++...- .+.+..++..+. ..+....+...+|++. .+|..+. +...|.++|++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~~ 70 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEER 70 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHHH
Confidence 4678999999999877766532 244455554443 4455555677899997 4576443 678888888887
Q ss_pred hhh
Q 033098 119 VQS 121 (127)
Q Consensus 119 ~~~ 121 (127)
.+.
T Consensus 71 ~~~ 73 (75)
T PF13417_consen 71 YPG 73 (75)
T ss_dssp STS
T ss_pred cCC
Confidence 654
No 240
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=95.87 E-value=0.052 Score=28.91 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=38.3
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHH
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRID 116 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~ 116 (127)
.++.++|++|++..-.|....-. +....++........+..+-..+|+++. .+|..+. +...|.++|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l~-----es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFMA-----ESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEee-----hHHHHHHHHh
Confidence 56788999999888777665322 2333344333323333445567898854 3354332 4455555553
No 241
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=95.84 E-value=0.035 Score=35.33 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=33.6
Q ss_pred HhhcCCCcEEEEEeCCCChh-hhhccHHHHHHHhhC----CCeEEEEEecCC
Q 033098 29 QANNQGCPVVVHFTAIWCMP-SVAMNPLFEELASAY----PDVLFLSVDVDD 75 (127)
Q Consensus 29 ~~~~~~~~v~v~f~~~~c~~-C~~~~~~l~~~~~~~----~~v~~~~vd~~~ 75 (127)
....+||+++|+|.-+.|+. |-.....|.++.++. .++.++.|.+|.
T Consensus 47 ~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 47 LDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp GGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred HHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 33448999999999999965 887777776665544 357777777763
No 242
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.83 E-value=0.21 Score=36.18 Aligned_cols=96 Identities=10% Similarity=0.168 Sum_probs=62.2
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCChhhhhccH-HH-HHHHhhC--CCeEEEEEecCC--hhhHHHhcCCCccceEEEe-c
Q 033098 23 WETFVSQANNQGCPVVVHFTAIWCMPSVAMNP-LF-EELASAY--PDVLFLSVDVDD--VKDVASKLEVKAMPTFLLM-R 95 (127)
Q Consensus 23 ~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~-~l-~~~~~~~--~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~-~ 95 (127)
+...|..+. .++.++|.|-+-......++.. .+ .....+. ..+.-+.|+... ...+..-|.+..+|.++++ .
T Consensus 8 ipeAIa~aK-~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~ 86 (506)
T KOG2507|consen 8 IPEAIAEAK-GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGF 86 (506)
T ss_pred hHHHHHHhh-cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecC
Confidence 445566654 4455666666667777777762 22 2222222 234445554433 3456677889999998777 7
Q ss_pred CCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 96 EGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 96 ~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
.|.++....|. ..++|..-|+++.
T Consensus 87 sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 87 SGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred CCceeEEeeccccHHHHHHHHHHHH
Confidence 89999999999 8899988887763
No 243
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=95.62 E-value=0.36 Score=31.66 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=52.8
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh------------------hhHHHhcCCCc--cceEEEecCCe
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV------------------KDVASKLEVKA--MPTFLLMREGA 98 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~------------------~~~~~~~~v~~--~Pt~~~~~~g~ 98 (127)
=+|++..|+.|-.....|.+++.+. +|..+...+|-- ......++..+ +|.+++ ||+
T Consensus 3 ELFTSQGCsSCPpAD~~L~~l~~~~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG~ 79 (202)
T PF06764_consen 3 ELFTSQGCSSCPPADRLLSELAARP-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NGR 79 (202)
T ss_dssp EEEE-TT-TT-HHHHHHHHHHHHHT-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TTT
T ss_pred eEecCCCCCCCcHHHHHHHHhhcCC-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CCe
Confidence 3678899999999999999999984 777776665421 23445556554 788988 776
Q ss_pred EEEEEecCCHHHHHHHHHHHhhh
Q 033098 99 VVDKLVGANPEEIRKRIDSFVQS 121 (127)
Q Consensus 99 ~~~~~~~~~~~~l~~~i~~~~~~ 121 (127)
... .|.+..++...|.+....
T Consensus 80 ~~~--~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 80 EHR--VGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp EEE--ETT-HHHHHHHHHHHHHT
T ss_pred eee--eccCHHHHHHHHHHhhcc
Confidence 553 377899999999988765
No 244
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=95.58 E-value=0.13 Score=30.92 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=36.5
Q ss_pred CCeEEEEEecCChhh----------HHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhh
Q 033098 64 PDVLFLSVDVDDVKD----------VASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 120 (127)
Q Consensus 64 ~~v~~~~vd~~~~~~----------~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~ 120 (127)
.++.+.+.+...+|. +.+.-|...+|.+++ ||+++....-++.++|.+|+.--..
T Consensus 39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~i~~~ 103 (123)
T PF06953_consen 39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLGISFS 103 (123)
T ss_dssp TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT--GG
T ss_pred CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhCCCcc
Confidence 489999999987653 345568899999888 9999987655599999999865443
No 245
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=95.53 E-value=0.076 Score=35.82 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=38.0
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEe
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLM 94 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 94 (127)
.||+.+++..+.|||.|....=.|--.-.+|+++.+.....+. .-.-..+|++++.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP------YDNYPNTPTLIFN 112 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc------ccCCCCCCeEEEe
Confidence 7899999999999999988776666666777777443332222 1122457776654
No 246
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.28 E-value=0.037 Score=32.85 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=26.5
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK 77 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~ 77 (127)
..|+.++|+.|++....|++- ++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCCh
Confidence 358899999999999888772 6777777876643
No 247
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.24 E-value=0.024 Score=33.36 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=25.6
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV 76 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 76 (127)
..|+.++|+.|++....|++- ++.|-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCC
Confidence 458899999999999888773 677777776654
No 248
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.21 E-value=0.036 Score=33.70 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=24.5
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 75 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 75 (127)
+..|+.++|+.|++....|++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccC
Confidence 4568899999999988777663 56666666544
No 249
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=95.01 E-value=0.097 Score=26.98 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=35.2
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh--hHHHhcCCCccceEEEecCCeEE
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK--DVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
.|+.++|+.|++..-.++...-. +....++..... ++.+..+...+|++.. +|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 57788999999888777765332 333444443322 2445567778998865 35443
No 250
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.83 E-value=0.51 Score=29.00 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=52.0
Q ss_pred CcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCc----cceEEEecCCeEEEEEecCCHHH
Q 033098 35 CPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKA----MPTFLLMREGAVVDKLVGANPEE 110 (127)
Q Consensus 35 ~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~~g~~~~~~~~~~~~~ 110 (127)
..-++.+++|.|+=|......++. .++.+-.+..++...+-+++||+. -=|.++ +|..+.-+ .-.+.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vEGH--VPa~a 95 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVEGH--VPAEA 95 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEecc--CCHHH
Confidence 345777999999999988777662 367777888888888888898763 335555 78666532 25666
Q ss_pred HHHHHHH
Q 033098 111 IRKRIDS 117 (127)
Q Consensus 111 l~~~i~~ 117 (127)
+..++.+
T Consensus 96 I~~ll~~ 102 (149)
T COG3019 96 IARLLAE 102 (149)
T ss_pred HHHHHhC
Confidence 6666654
No 251
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=94.74 E-value=0.16 Score=26.89 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=35.8
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC----ChhhHHHhcCCCccceEEEecCCeE
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD----DVKDVASKLEVKAMPTFLLMREGAV 99 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 99 (127)
..|+.++|++|++..-.|....-.+ ....++.. ..+++.+......+|++.. .+|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~ 62 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV---PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTV 62 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc---eEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCE
Confidence 3577889999999998887764333 33344432 1234555556668999965 34433
No 252
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=94.74 E-value=0.18 Score=29.65 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=39.8
Q ss_pred HHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCC
Q 033098 28 SQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDD 75 (127)
Q Consensus 28 ~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~ 75 (127)
.....+|++++|.=.|+.|+.-. ....|+++.++| .++.++...+..
T Consensus 15 ~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 15 SLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp EGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 33445899999999999999999 777999999998 379999998875
No 253
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.53 E-value=0.046 Score=31.91 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=24.9
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV 76 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 76 (127)
..|+.++|+.|++....|++- ++.|-.+|+.+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence 468899999999998887764 566666666544
No 254
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=94.35 E-value=0.66 Score=28.17 Aligned_cols=106 Identities=16% Similarity=0.266 Sum_probs=54.9
Q ss_pred CCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhh-hhccHHH-HHHHhhC-CC---eEEEEEecCChhhHHHhc
Q 033098 10 NKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPS-VAMNPLF-EELASAY-PD---VLFLSVDVDDVKDVASKL 83 (127)
Q Consensus 10 ~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C-~~~~~~l-~~~~~~~-~~---v~~~~vd~~~~~~~~~~~ 83 (127)
...++.++.|.++.++.+... ...++| +-.+-|+=- -..+|.. ..+.... |+ -.|...|.+........|
T Consensus 14 t~~Gf~eL~T~e~Vd~~~~~~---~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf 89 (136)
T PF06491_consen 14 TRAGFEELTTAEEVDEALKNK---EGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYF 89 (136)
T ss_dssp HTTT-EE--SHHHHHHHHHH-----SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTS
T ss_pred HHcCccccCCHHHHHHHHhCC---CCcEEE-EEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhc
Confidence 456788999999999999843 334444 455566421 2334433 3333322 43 233344444333333333
Q ss_pred -C-CCccceEEEecCCeEEEEEe-----cCCHHHHHHHHHHHh
Q 033098 84 -E-VKAMPTFLLMREGAVVDKLV-----GANPEEIRKRIDSFV 119 (127)
Q Consensus 84 -~-v~~~Pt~~~~~~g~~~~~~~-----~~~~~~l~~~i~~~~ 119 (127)
+ -.+-|++-+|++|++++-.. |.+.+.|.+-|....
T Consensus 90 ~~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 90 EPYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp TTS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred CCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 2 24678999999999887543 446777776666554
No 255
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=94.27 E-value=0.77 Score=30.75 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=35.9
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhC-----CCeEEEEEecC
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAY-----PDVLFLSVDVD 74 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~-----~~v~~~~vd~~ 74 (127)
.|.++||-+-..+|..|..-...|+.|..++ ++|.|+.||--
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 7899999999999999999888888877544 68999999854
No 256
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=94.27 E-value=0.099 Score=30.93 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=25.2
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV 76 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 76 (127)
+..|+.++|+.|++....|++. ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 3467899999999998888773 566666676543
No 257
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=94.04 E-value=0.098 Score=27.81 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=40.9
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh-hhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHH
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-KDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDS 117 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~ 117 (127)
..|+.++|+.|++..-.++...-.+ ....+|.... +++.+......+|++.. +|..+ .....|.+++.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~l-----~es~aI~~yL~~ 71 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV---EIIDVDPDNPPEDLAELNPYGTVPTLVD--RDLVL-----YESRIIMEYLDE 71 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc---EEEEcCCCCCCHHHHhhCCCCCCCEEEE--CCEEE-----EcHHHHHHHHHh
Confidence 4578899999999988776654332 3333444332 34444455668997742 44322 245666666654
No 258
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.98 E-value=0.096 Score=31.86 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=23.9
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 75 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 75 (127)
+..|+.++|+.|++....|++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC
Confidence 4568899999999988777663 55555556543
No 259
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=93.95 E-value=0.025 Score=31.53 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=43.8
Q ss_pred EeCCCChhhhhccHHHHHHHhhC--CCeEEEEEecCChhhHHHhcCCCccceEE
Q 033098 41 FTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDVDDVKDVASKLEVKAMPTFL 92 (127)
Q Consensus 41 f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~ 92 (127)
|-+...+.++.....+..+.+.+ ..+.+-.||+.++|+++..+++-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 45556677788888888888876 35999999999999999999999999874
No 260
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=93.65 E-value=0.85 Score=26.98 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=42.1
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecC
Q 033098 20 VESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMRE 96 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 96 (127)
...+.+++..+... ..++|.=+-+.- .=+.....+.++..+.+.. .++.=+|.+.++|+|+.+|++++.++
T Consensus 10 ~~~L~~l~~~a~~~-~~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERA-GVVVVFRGFPDG-SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhC-CcEEEEECCCCC-CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 45667777776434 333333333333 3344444455555544323 22222589999999999999999877
No 261
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=93.47 E-value=0.56 Score=31.40 Aligned_cols=82 Identities=28% Similarity=0.351 Sum_probs=57.7
Q ss_pred CcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC------------------ChhhHHHhcCCCccceEEEecC
Q 033098 35 CPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD------------------DVKDVASKLEVKAMPTFLLMRE 96 (127)
Q Consensus 35 ~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~------------------~~~~~~~~~~v~~~Pt~~~~~~ 96 (127)
..|+=+|++..|..|-.....|.+++++ +++.-+...+| ......+.|+-.+++|=-.+-|
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 3455567788999999999999999888 45554444333 1235667788888766444448
Q ss_pred CeEEEEEecCCHHHHHHHHHHHh
Q 033098 97 GAVVDKLVGANPEEIRKRIDSFV 119 (127)
Q Consensus 97 g~~~~~~~~~~~~~l~~~i~~~~ 119 (127)
|+...+ |.+..+|.+.|....
T Consensus 121 Gr~~~~--Gad~~~i~~~i~a~~ 141 (261)
T COG5429 121 GRVHAN--GADPGAIEDAIAAMA 141 (261)
T ss_pred chhhhc--CCCHHHHHHHHHHhh
Confidence 877665 678888888887664
No 262
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.72 Score=33.11 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=53.6
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
.+..-+=-|++-.|..|-.....|+-++-..|++....||..-.++-...-++-++||+++ ||+..
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~f 180 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEF 180 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cchhh
Confidence 4556666777888999988888888887777899999999887777777789999999877 66554
No 263
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=92.83 E-value=0.32 Score=25.86 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=33.9
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC----hhhHHHhcCCCccceEEE
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 93 (127)
..|+.+.|+.|++..-.++...-. +....+|..+ .+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 457899999999888777776433 3334444322 245555555668999964
No 264
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=92.58 E-value=0.21 Score=30.39 Aligned_cols=33 Identities=6% Similarity=0.180 Sum_probs=24.0
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 75 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 75 (127)
+..|+.++|+.|++....|++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCC
Confidence 3467889999999988766653 56666666653
No 265
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=92.33 E-value=1.6 Score=26.58 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=41.8
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCe
Q 033098 20 VESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGA 98 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 98 (127)
...+.+++..+...+-++ |.=+-... .-+.....+.++..+-.+. .+.=+|.+.++|+|+.+|++++.+++.
T Consensus 11 ~~~Lk~l~~~a~~~g~~~-VlRG~~~~-~~~~T~~~i~~L~~~~~~~-----~v~IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 11 EPLLKQLLDQAEALGAPL-VIRGLLDN-GFKATATRIQSLIKDGGKS-----GVQIDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred HHHHHHHHHHHHHhCCeE-EEeCCCCC-CHHHHHHHHHHHHhcCCCC-----cEEEChHHHhhcCceEcCEEEEECCCC
Confidence 345666666665444433 33333333 2234444555554443222 222258999999999999999997764
No 266
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=91.79 E-value=0.76 Score=25.65 Aligned_cols=53 Identities=8% Similarity=0.127 Sum_probs=34.0
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh-hHHHhcCCCccceEEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-DVASKLEVKAMPTFLL 93 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~ 93 (127)
+..|+.+.|++|++..-.|....-. +.+..++....+ .+.+......+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4556788899999888777665333 344455544332 3445556678999875
No 267
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=91.78 E-value=0.31 Score=31.10 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=24.2
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhC
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAY 63 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~ 63 (127)
|.+|+.+.||+|....+.|.++.+++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 67889999999999999999999988
No 268
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=1.2 Score=29.38 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=47.1
Q ss_pred EeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHHHHHHH
Q 033098 41 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDS 117 (127)
Q Consensus 41 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~ 117 (127)
|....|..|......|++-. -.++|+|. +....+.++-+-++-++|.+++ +|+++.- ++ ++++++..++-
T Consensus 16 ~~HktC~ssy~Lf~~L~nkg-ll~~Vkii--~a~~p~f~~~~~~V~SvP~Vf~--DGel~~~--dpVdp~~ies~~~G 86 (265)
T COG5494 16 FTHKTCVSSYMLFEYLENKG-LLGKVKII--DAELPPFLAFEKGVISVPSVFI--DGELVYA--DPVDPEEIESILSG 86 (265)
T ss_pred EEecchHHHHHHHHHHHhcC-CCCCceEE--EcCCChHHHhhcceeecceEEE--cCeEEEc--CCCCHHHHHHHHcC
Confidence 55677888877666555421 12577754 5556666666778999999866 8887754 45 88888777643
No 269
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=91.41 E-value=3.2 Score=28.21 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=40.0
Q ss_pred ceEEecChhhHHHHHHHhhcCCCcEEEEEeCC-----CChhhhhccHHHHHHHhhCC-CeEEEEEecCChhhHHHh----
Q 033098 13 RVVKVDSVESWETFVSQANNQGCPVVVHFTAI-----WCMPSVAMNPLFEELASAYP-DVLFLSVDVDDVKDVASK---- 82 (127)
Q Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~-----~c~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~---- 82 (127)
+.+++ +... .+++... .+...+..|++. .-..-+.....|++.+..-+ ++.+-.+|.+.+++..++
T Consensus 8 k~ysL-S~~T-~~~L~~L--~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~ 83 (271)
T PF09822_consen 8 KRYSL-SDQT-KKVLKSL--DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKE 83 (271)
T ss_pred CCccC-CHHH-HHHHHhC--CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHh
Confidence 34445 4444 3334432 444444444454 23333444444555544445 799999999777665555
Q ss_pred cCCCccc
Q 033098 83 LEVKAMP 89 (127)
Q Consensus 83 ~~v~~~P 89 (127)
+|+...+
T Consensus 84 ~Gi~~~~ 90 (271)
T PF09822_consen 84 YGIQPVQ 90 (271)
T ss_pred cCCCccc
Confidence 8877643
No 270
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=90.88 E-value=4.5 Score=28.92 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=68.8
Q ss_pred hcCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhC---CCeEEEEEecCChhhH----H
Q 033098 8 QQNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAY---PDVLFLSVDVDDVKDV----A 80 (127)
Q Consensus 8 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~---~~v~~~~vd~~~~~~~----~ 80 (127)
.-....+..+ ++.++-...... -+..-+|.|--...+.-..+...|.++++.. +++.++.||-|+.|-+ .
T Consensus 245 ~h~rptlrkl-~~~~m~e~Wedd--~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE 321 (383)
T PF01216_consen 245 EHKRPTLRKL-RPEDMFETWEDD--IDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWE 321 (383)
T ss_dssp HT-S-SEEE---GGGHHHHHHSS--SSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHH
T ss_pred HhchhHhhhC-Chhhhhhhhccc--CCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHH
Confidence 3445556666 777777777654 3456677788899999999999999999987 5799999999987654 4
Q ss_pred HhcCCC-ccceEEEe--cCCeEEEEEe-----cCCHHHHHHHHHHHhhh
Q 033098 81 SKLEVK-AMPTFLLM--REGAVVDKLV-----GANPEEIRKRIDSFVQS 121 (127)
Q Consensus 81 ~~~~v~-~~Pt~~~~--~~g~~~~~~~-----~~~~~~l~~~i~~~~~~ 121 (127)
+-|+|. .-|.+=+. .+..-++--. -++.++++.||+.++..
T Consensus 322 ~tF~Idl~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg 370 (383)
T PF01216_consen 322 KTFGIDLSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSG 370 (383)
T ss_dssp HHHTT-TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCT
T ss_pred hhcCccccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcC
Confidence 456765 34886555 3443333211 22789999999999854
No 271
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=2.2 Score=24.73 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=41.3
Q ss_pred CCCcEEEEEeC---CCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCC-CccceE-EEecCCeEEE
Q 033098 33 QGCPVVVHFTA---IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEV-KAMPTF-LLMREGAVVD 101 (127)
Q Consensus 33 ~~~~v~v~f~~---~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~Pt~-~~~~~g~~~~ 101 (127)
+++.+++.=.+ |-|+.+.+....|.... -+.|..+|+-.++++.+...- ..+||| -+|-+|..+.
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACG----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcC----CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 45555555555 55777676666665532 188999999999988876643 345553 2334887664
No 272
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=89.25 E-value=0.62 Score=29.94 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=24.1
Q ss_pred hHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHHHHH
Q 033098 78 DVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 78 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i 115 (127)
..+.+.|+.++|++++ +|+.. ..|. +.+.+.+.|
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~~~--~~G~~~~~~~~~~i 200 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGKYA--VSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCeEe--ecCCCCHHHHHHHh
Confidence 4566789999999988 55432 3455 777777665
No 273
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=89.23 E-value=0.56 Score=27.76 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=23.9
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 75 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 75 (127)
+..|+.+.|+.|++....|++- ++.|-.+|+-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhc
Confidence 3568899999999988777663 56666666543
No 274
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=88.99 E-value=0.73 Score=26.93 Aligned_cols=57 Identities=9% Similarity=0.102 Sum_probs=38.8
Q ss_pred EeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCC--ccceEEE-ecCCe
Q 033098 41 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVK--AMPTFLL-MREGA 98 (127)
Q Consensus 41 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~--~~Pt~~~-~~~g~ 98 (127)
||.-+|+.|......+.+... ...+.|+.+-.....++...++++ ...+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 789999999999988888732 246887776444444556677765 3444444 47776
No 275
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=88.98 E-value=0.67 Score=27.35 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=46.8
Q ss_pred ChhhhhccHHHHHHHhhCCCeEEEEEecCChh-hHHHhcC--CCccceEEEecCCeEE---EEEecC----CHHHHHHHH
Q 033098 46 CMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-DVASKLE--VKAMPTFLLMREGAVV---DKLVGA----NPEEIRKRI 115 (127)
Q Consensus 46 c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~~~~~~~--v~~~Pt~~~~~~g~~~---~~~~~~----~~~~l~~~i 115 (127)
|++|..+...|...-....++.+.+|+....+ .+....| -++.|++++-.+.... ..+.+. +++.|...+
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~L 103 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYL 103 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHH
Confidence 99999999988776544457999999988754 3445555 4689999775432111 111111 566676666
Q ss_pred HHH
Q 033098 116 DSF 118 (127)
Q Consensus 116 ~~~ 118 (127)
.+.
T Consensus 104 a~r 106 (112)
T PF11287_consen 104 AER 106 (112)
T ss_pred HHH
Confidence 543
No 276
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=88.26 E-value=2.4 Score=22.13 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=34.4
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC----hhhHHHhcCCCccceEEEecCCeEE
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
..|+.+.|+.|++..-.++...-. +....++... .+.+.+......+|++.. +|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 357789999999888777765433 3334444322 233444444567999865 35443
No 277
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=87.60 E-value=4.6 Score=26.74 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=44.9
Q ss_pred CChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhc-CCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhhhh
Q 033098 45 WCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL-EVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSI 122 (127)
Q Consensus 45 ~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~~~ 122 (127)
.|+.|+++.-.|. .+...+.+-.||....++..+.. .....|.+.+ +|.. -.+.++++++|++.++..
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~-----~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKW-----VTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCce-----eccHHHHHHHHHHhcCCC
Confidence 4777777766665 33235777789998887777554 5556776655 3321 236788999998887644
No 278
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=87.32 E-value=3.8 Score=23.29 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=42.3
Q ss_pred CCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhc-CCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhh
Q 033098 44 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL-EVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 120 (127)
Q Consensus 44 ~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~ 120 (127)
.+|++|++..-.|....- ...+..+|....++...+. -...+|+++. +|.++ .+...|.++|++...
T Consensus 20 g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~--~~~~i-----~eS~~I~eYLde~~~ 87 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPEDLKDLAPGTQPPFLLY--NGEVK-----TDNNKIEEFLEETLC 87 (91)
T ss_pred CCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCHHHHHhCCCCCCCEEEE--CCEEe-----cCHHHHHHHHHHHcc
Confidence 579999988877766421 2445566666655554444 4567997753 45433 367888888887654
No 279
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=87.13 E-value=6.4 Score=27.77 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=66.9
Q ss_pred hhhhcCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhh-hccHHH-HHHHhhCCCeEEEEEecCChhhHHHh
Q 033098 5 AQEQQNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSV-AMNPLF-EELASAYPDVLFLSVDVDDVKDVASK 82 (127)
Q Consensus 5 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~-~~~~~l-~~~~~~~~~v~~~~vd~~~~~~~~~~ 82 (127)
|....-..-|.+| |=++.+++.+ .|.|.+++|+.+...... .+...+ .++.++-..+.++..|+.....-..-
T Consensus 203 Wi~dKcvpLVREi-TFeN~EELtE----EGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~H 277 (375)
T KOG0912|consen 203 WIQDKCVPLVREI-TFENAEELTE----EGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRH 277 (375)
T ss_pred HHHhcchhhhhhh-hhccHHHHhh----cCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHH
Confidence 3333444445556 7777777777 789999999998876653 344333 34444434599999998876554555
Q ss_pred cC--CCccceEEEec--CCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 83 LE--VKAMPTFLLMR--EGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 83 ~~--v~~~Pt~~~~~--~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
+| ...+|.+.+.. .--+...+... .+-+|.+|+..+-
T Consensus 278 lgKs~~DLPviaIDsF~Hmylfp~f~di~~pGkLkqFv~DL~ 319 (375)
T KOG0912|consen 278 LGKSPDDLPVIAIDSFRHMYLFPDFNDINIPGKLKQFVADLH 319 (375)
T ss_pred hCCCcccCcEEEeeccceeeecCchhhhcCccHHHHHHHHHh
Confidence 54 34577665542 22222233333 4568888887763
No 280
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=86.82 E-value=0.82 Score=27.00 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=24.1
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 75 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 75 (127)
..|+.+.|+.|++....|++- ++.|-.+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccC
Confidence 468899999999998888773 56666666544
No 281
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=86.58 E-value=3.4 Score=22.06 Aligned_cols=57 Identities=9% Similarity=0.005 Sum_probs=34.8
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC----hhhHHHhcCCCccceEEEecCCeEE
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
..|+.+.|+.|++..-.+++..-. +.+..+|... .+++.+.-....+|++.. +|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR---CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC---CEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEE
Confidence 457788899998887666665433 4445555432 233444445667999863 66544
No 282
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=86.26 E-value=0.97 Score=28.73 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=22.0
Q ss_pred hHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHHHHH
Q 033098 78 DVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRI 115 (127)
Q Consensus 78 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i 115 (127)
..+.++|+.++|++++ +|+.+ .|. ..+.+.+.|
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~~~---~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGEMF---WGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCeee---cccccHHHHHHHh
Confidence 4567789999999988 67533 355 445555443
No 283
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=85.87 E-value=6.1 Score=24.30 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=50.0
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCcc-c-eEEEecCCeEEE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAM-P-TFLLMREGAVVD 101 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~-P-t~~~~~~g~~~~ 101 (127)
.+++-.+.+|.-.|+.|-.....|.+.-.. ..+.|..+..+....+...+|+..- + ++++.++|+...
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 467778889999999999866666554222 3699999988888888888887643 3 455557776654
No 284
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=85.66 E-value=1 Score=26.48 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=23.3
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 75 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 75 (127)
..|+.+.|..|++....|++- ++.|-.+|+-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccc
Confidence 468899999999988776663 55666666543
No 285
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=83.58 E-value=7.2 Score=23.19 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=49.6
Q ss_pred EeCC--CChhhhhccHHHHHHHhhC--CCeEEEEEecCC-h-----------hhHHHhcCCCccc--eEEEecCCeEEEE
Q 033098 41 FTAI--WCMPSVAMNPLFEELASAY--PDVLFLSVDVDD-V-----------KDVASKLEVKAMP--TFLLMREGAVVDK 102 (127)
Q Consensus 41 f~~~--~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~-~-----------~~~~~~~~v~~~P--t~~~~~~g~~~~~ 102 (127)
++|| ..+.-+.....|.+-.... .++.++.+-.+. . ..+.+.|++..-. .+++-++|.+-.+
T Consensus 15 v~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 15 VFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred EECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 4444 4555566666776644444 367777663332 2 2678888866322 3444489999888
Q ss_pred EecC-CHHHHHHHHHHH
Q 033098 103 LVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 103 ~~~~-~~~~l~~~i~~~ 118 (127)
...+ +.++|-..|+..
T Consensus 95 ~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 95 WPEPIDPEELFDTIDAM 111 (118)
T ss_pred cCCCCCHHHHHHHHhCC
Confidence 7777 889988888754
No 286
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=82.67 E-value=10 Score=24.32 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=35.8
Q ss_pred CCCcEEEEEe-CCCChhhhhc----cHHHHHHHhhCCCeEEEEEecCCh---------------------hhHHHhcCCC
Q 033098 33 QGCPVVVHFT-AIWCMPSVAM----NPLFEELASAYPDVLFLSVDVDDV---------------------KDVASKLEVK 86 (127)
Q Consensus 33 ~~~~v~v~f~-~~~c~~C~~~----~~~l~~~~~~~~~v~~~~vd~~~~---------------------~~~~~~~~v~ 86 (127)
.+++++++|| +..-|-|.+. +..++++.+. +..++.+..|.. .++...+|..
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka--~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~ 166 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA--GAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAP 166 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHhhc--CceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCCC
Confidence 4458888888 3344555443 3344555443 455556655432 3566777776
Q ss_pred ccc--------eEEEecCC
Q 033098 87 AMP--------TFLLMREG 97 (127)
Q Consensus 87 ~~P--------t~~~~~~g 97 (127)
+.| ++++.++|
T Consensus 167 k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 167 KDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred CCCCCCcccceEEEEecCC
Confidence 655 56666665
No 287
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=81.62 E-value=6 Score=20.90 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=40.4
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC----ChhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHH
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD----DVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRK 113 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~ 113 (127)
+..|+.+.|+.|++..-.++...-. +....++.. ..+.+.+......+|.+.. +|..+. ....|.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~-----es~aI~~ 71 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLF-----ESRAITR 71 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEE-----cHHHHHH
Confidence 4456677899999988877775433 333344432 1234455556677998853 454332 4455555
Q ss_pred HHH
Q 033098 114 RID 116 (127)
Q Consensus 114 ~i~ 116 (127)
+|.
T Consensus 72 yL~ 74 (76)
T cd03053 72 YLA 74 (76)
T ss_pred HHh
Confidence 554
No 288
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=81.33 E-value=12 Score=24.20 Aligned_cols=88 Identities=16% Similarity=0.293 Sum_probs=47.2
Q ss_pred hcCCCcEEEEEeC-CCChhhhhccHHHHHHHhhC--CCeEEEEEecC----------------------------ChhhH
Q 033098 31 NNQGCPVVVHFTA-IWCMPSVAMNPLFEELASAY--PDVLFLSVDVD----------------------------DVKDV 79 (127)
Q Consensus 31 ~~~~~~v~v~f~~-~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~----------------------------~~~~~ 79 (127)
.+.++.+++.||. .+---|-...-.+...+.++ -+..++.+.+| .+.++
T Consensus 30 dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~I 109 (196)
T KOG0852|consen 30 DYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEI 109 (196)
T ss_pred hhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhh
Confidence 3478999999984 33222322333344444443 14444444433 23578
Q ss_pred HHhcCC----Cccc---eEEEecCCeEEE---EEe--cCCHHHHHHHHHHH
Q 033098 80 ASKLEV----KAMP---TFLLMREGAVVD---KLV--GANPEEIRKRIDSF 118 (127)
Q Consensus 80 ~~~~~v----~~~P---t~~~~~~g~~~~---~~~--~~~~~~l~~~i~~~ 118 (127)
++.||+ .+++ .+|+..+|.... +.- |.+-++....++..
T Consensus 110 srdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 110 SRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAF 160 (196)
T ss_pred HHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHH
Confidence 899986 3555 366667775443 111 22667777666543
No 289
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=81.19 E-value=1.9 Score=25.67 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=20.1
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhh
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASA 62 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~ 62 (127)
+..|+.|.|..|++....|++-.-.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~ 27 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIE 27 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC
Confidence 5568899999999999888875433
No 290
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=80.94 E-value=13 Score=24.51 Aligned_cols=21 Identities=10% Similarity=0.331 Sum_probs=18.3
Q ss_pred hhhHHHhcCCCccceEEEecC
Q 033098 76 VKDVASKLEVKAMPTFLLMRE 96 (127)
Q Consensus 76 ~~~~~~~~~v~~~Pt~~~~~~ 96 (127)
+|.++++|+|+.+|+|++...
T Consensus 151 DP~lF~~F~I~~VPafVv~C~ 171 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS 171 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC
Confidence 478999999999999999743
No 291
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=80.49 E-value=2.7 Score=25.39 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=23.4
Q ss_pred EEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEec
Q 033098 37 VVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV 73 (127)
Q Consensus 37 v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~ 73 (127)
++..|+.+.|..|++....|++- ++.|-.+|.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS-----GHDVEVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEec
Confidence 35568889999999999888774 455555554
No 292
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=79.74 E-value=7.3 Score=27.94 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=43.5
Q ss_pred CChhhhhccHHH----HHHHhhC---C-CeEEEEEecC-Ch--hhHHHhcCCCccc-eEEEecCCeEEEEEecC-CHHHH
Q 033098 45 WCMPSVAMNPLF----EELASAY---P-DVLFLSVDVD-DV--KDVASKLEVKAMP-TFLLMREGAVVDKLVGA-NPEEI 111 (127)
Q Consensus 45 ~c~~C~~~~~~l----~~~~~~~---~-~v~~~~vd~~-~~--~~~~~~~~v~~~P-t~~~~~~g~~~~~~~~~-~~~~l 111 (127)
.||.|.+..-.+ .++-+.+ + .+++..+-|- .. ..-..++|+.+-+ ..++|.+|+++...... -.+++
T Consensus 270 sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l 349 (360)
T PRK00366 270 SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEEL 349 (360)
T ss_pred ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHH
Confidence 377776555443 3333344 1 2666666663 21 2345678887654 58889999999876544 23555
Q ss_pred HHHHHHH
Q 033098 112 RKRIDSF 118 (127)
Q Consensus 112 ~~~i~~~ 118 (127)
.+.|+++
T Consensus 350 ~~~i~~~ 356 (360)
T PRK00366 350 EAEIEAY 356 (360)
T ss_pred HHHHHHH
Confidence 5555544
No 293
>PRK10853 putative reductase; Provisional
Probab=79.35 E-value=2.5 Score=25.22 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=24.1
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 75 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 75 (127)
+..|+.+.|..|++....|++- ++.|-.+|.-+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehcc
Confidence 4567789999999999888763 55666666543
No 294
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=79.28 E-value=11 Score=22.31 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=49.1
Q ss_pred CCCcEEEEEeCCC-ChhhhhccHHHHHHHhhC---------CC-eE-EEEEecCChhhHHHhcCCC-ccceEEEe---cC
Q 033098 33 QGCPVVVHFTAIW-CMPSVAMNPLFEELASAY---------PD-VL-FLSVDVDDVKDVASKLEVK-AMPTFLLM---RE 96 (127)
Q Consensus 33 ~~~~v~v~f~~~~-c~~C~~~~~~l~~~~~~~---------~~-v~-~~~vd~~~~~~~~~~~~v~-~~Pt~~~~---~~ 96 (127)
+..+.+|+|.... -+..+...+.|+.++++. .. +. |+..+-+-...+..-.++. ..|.+++. ..
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r 92 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSAR 92 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEecccc
Confidence 5567778787443 335666666776665543 11 33 3333333333344444655 46887776 23
Q ss_pred CeEEEEEecCCHHHHHHHHHHHh
Q 033098 97 GAVVDKLVGANPEEIRKRIDSFV 119 (127)
Q Consensus 97 g~~~~~~~~~~~~~l~~~i~~~~ 119 (127)
++-+......+.+.+.+|+.+++
T Consensus 93 ~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 93 AKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ceEeCchHhcCHHHHHHHHHHhh
Confidence 44444333448899999998875
No 295
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=78.57 E-value=3 Score=24.28 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=21.3
Q ss_pred EeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh
Q 033098 41 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV 76 (127)
Q Consensus 41 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 76 (127)
|+.+.|..|++....|++- ++.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhC
Confidence 6789999999999888762 677777887664
No 296
>PRK10026 arsenate reductase; Provisional
Probab=77.17 E-value=3.7 Score=25.39 Aligned_cols=31 Identities=6% Similarity=-0.009 Sum_probs=23.2
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEec
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV 73 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~ 73 (127)
+..|+.+.|..|++....|++- ++.|-.+|+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~ 34 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHY 34 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEee
Confidence 4568899999999999888774 455555554
No 297
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=75.77 E-value=2.3 Score=27.08 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=16.7
Q ss_pred hHHHhcCCCccceEEEecCCe
Q 033098 78 DVASKLEVKAMPTFLLMREGA 98 (127)
Q Consensus 78 ~~~~~~~v~~~Pt~~~~~~g~ 98 (127)
..+.++|+.++|++++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 456678999999999986554
No 298
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=75.36 E-value=11 Score=24.48 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=45.0
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh-hhHHHhcCCCccceEEEecCCeEEEEEecCCHHHH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-KDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEI 111 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l 111 (127)
++...+-.|+.+.|+.|++..-.|++..- .+....+|.... +++.+..-...+|++.. +|..+. ....|
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~~l~-----ES~AI 75 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--RELTLY-----ESRII 75 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCEEee-----CHHHH
Confidence 34455666777889999999877776532 244555665433 34444444567999863 454332 33455
Q ss_pred HHHHHHHh
Q 033098 112 RKRIDSFV 119 (127)
Q Consensus 112 ~~~i~~~~ 119 (127)
..+|.+..
T Consensus 76 l~YL~~~~ 83 (211)
T PRK09481 76 MEYLDERF 83 (211)
T ss_pred HHHHHHhC
Confidence 55555443
No 299
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=74.59 E-value=5.9 Score=28.37 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=40.9
Q ss_pred CChhhhhccHHHHHHHhh----C----CCeEEEEEecCCh--h-hHHHhcCCC-ccc-eEEEecCCeEEEEE-ecCC-HH
Q 033098 45 WCMPSVAMNPLFEELASA----Y----PDVLFLSVDVDDV--K-DVASKLEVK-AMP-TFLLMREGAVVDKL-VGAN-PE 109 (127)
Q Consensus 45 ~c~~C~~~~~~l~~~~~~----~----~~v~~~~vd~~~~--~-~~~~~~~v~-~~P-t~~~~~~g~~~~~~-~~~~-~~ 109 (127)
.||.|-+..-.+.++.++ . .++++..+-|-=| . .-..+||+. +-| ..++|++|+++.+. .... .+
T Consensus 270 SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd 349 (359)
T PF04551_consen 270 SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVD 349 (359)
T ss_dssp E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHH
T ss_pred eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHH
Confidence 488886665555555443 2 2688888876533 1 223467877 444 48889999999987 3333 46
Q ss_pred HHHHHHHHH
Q 033098 110 EIRKRIDSF 118 (127)
Q Consensus 110 ~l~~~i~~~ 118 (127)
+|.+.|+++
T Consensus 350 ~L~~~I~~~ 358 (359)
T PF04551_consen 350 ELIELIEEH 358 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 677766654
No 300
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=73.94 E-value=7.4 Score=21.42 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=20.6
Q ss_pred ccceEEEe-cCCeEEEEEe--cCCHHHHHHHHHHH
Q 033098 87 AMPTFLLM-REGAVVDKLV--GANPEEIRKRIDSF 118 (127)
Q Consensus 87 ~~Pt~~~~-~~g~~~~~~~--~~~~~~l~~~i~~~ 118 (127)
.-|+++++ .+|+...+.. +.+.+++.+++.+.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 35888887 5787665543 44999999999875
No 301
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=73.48 E-value=11 Score=19.68 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=33.8
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC-hhhHHHhcCCCccceEEEecCCeEE
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD-VKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
.|+.+.|+.|++..-.+....... .+....+|... .+++.+......+|.+.. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~l 62 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEAL 62 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCEE
Confidence 467888999998887666621111 24444554322 334444445667898754 345433
No 302
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=71.69 E-value=5.8 Score=25.88 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=20.6
Q ss_pred HHHhcCCCccceEEEecC-CeEEEEEecCC-HHHHHHH
Q 033098 79 VASKLEVKAMPTFLLMRE-GAVVDKLVGAN-PEEIRKR 114 (127)
Q Consensus 79 ~~~~~~v~~~Pt~~~~~~-g~~~~~~~~~~-~~~l~~~ 114 (127)
.+.+.|+.++|+|++-.+ |. ...+.|.+ -+.++++
T Consensus 171 ~A~~~Gv~GVP~fvv~~~~~~-~e~fwG~Drl~~~~~~ 207 (209)
T cd03021 171 EALKYGAFGLPWIVVTNDKGK-TEMFFGSDRFEQVADF 207 (209)
T ss_pred HHHHcCCCCCCEEEEEcCCCC-ccceecCCcHHHHHHH
Confidence 345679999999988643 32 12334553 3444443
No 303
>PRK10387 glutaredoxin 2; Provisional
Probab=71.59 E-value=24 Score=22.66 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=38.8
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHh
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFV 119 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~ 119 (127)
.++.+.|++|.+..-.++...-.| ....++...........+...+|+++. .+|..+. +...|..+|.+..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~y---~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~l~-----eS~aI~~yL~~~~ 73 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIPV---ELIVLANDDEATPIRMIGQKQVPILQK-DDGSYMP-----ESLDIVHYIDELD 73 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCCe---EEEEcCCCchhhHHHhcCCcccceEEe-cCCeEec-----CHHHHHHHHHHhC
Confidence 456778999999887776654333 333334333222222334457898854 2454332 3556666665543
No 304
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=70.81 E-value=9.3 Score=24.43 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=24.4
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCC---CeEEE
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYP---DVLFL 69 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~---~v~~~ 69 (127)
.|+..-||+|....+.|.++.+.++ ++.+.
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~ 35 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELGDEVDVEIE 35 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCCCCCceEEE
Confidence 5678889999999999999998883 45544
No 305
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=69.48 E-value=6.9 Score=20.22 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=20.1
Q ss_pred HHHhhcCCCcEEEEEeCC-----------CChhhhhccHHH
Q 033098 27 VSQANNQGCPVVVHFTAI-----------WCMPSVAMNPLF 56 (127)
Q Consensus 27 ~~~~~~~~~~v~v~f~~~-----------~c~~C~~~~~~l 56 (127)
+.++.-.|.+|+-+...- -||.|+.....|
T Consensus 17 I~esav~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 17 IAESAVMGTPVVALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred HHHHHhcCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 333334788888877764 489998876554
No 306
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=69.13 E-value=26 Score=22.18 Aligned_cols=89 Identities=21% Similarity=0.310 Sum_probs=49.9
Q ss_pred hhcCCCcEEEEEeCCCChhhhhccHHHHHHHhh-CC--C-eEEEEEecCCh-----------------------------
Q 033098 30 ANNQGCPVVVHFTAIWCMPSVAMNPLFEELASA-YP--D-VLFLSVDVDDV----------------------------- 76 (127)
Q Consensus 30 ~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~-~~--~-v~~~~vd~~~~----------------------------- 76 (127)
+...||+-+|..-|-....-..-.|.++.+... ++ + =..-.||.|+.
T Consensus 33 ~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~ 112 (160)
T PF09695_consen 33 AQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSN 112 (160)
T ss_pred cccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCC
Confidence 333677777766655555555555566666655 33 2 23334555432
Q ss_pred hhHHHhcCCCcc-ceEEEe-cCCeEEEEEecC-CHHHHHHHHHHH
Q 033098 77 KDVASKLEVKAM-PTFLLM-REGAVVDKLVGA-NPEEIRKRIDSF 118 (127)
Q Consensus 77 ~~~~~~~~v~~~-Pt~~~~-~~g~~~~~~~~~-~~~~l~~~i~~~ 118 (127)
..+...+++..- -.+++. ++|++.....|. +++++++.|.-+
T Consensus 113 G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 113 GVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred CceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 112222333322 234444 899999888888 999998877643
No 307
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=68.79 E-value=15 Score=19.25 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=39.3
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcC-C-CccceEEEecCCeEEEEEecCCHHHHHHHHHH
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLE-V-KAMPTFLLMREGAVVDKLVGANPEEIRKRIDS 117 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~-v-~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~ 117 (127)
.++.+.|++|++..-.+....-.+ ....++....+....+.+ . ..+|++.. +|..+ .+...+.++|++
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l-----~eS~aI~~yL~~ 72 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVPY---EYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPI-----CESLIIVEYIDE 72 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCCC---EEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEe-----ehHHHHHHHHHh
Confidence 466788999999887777754333 333444433223333443 3 57998864 45332 245666666654
No 308
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=66.94 E-value=8 Score=29.54 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=46.9
Q ss_pred HHHHHhhcCCCcEEEEEeCCCChhhhhccHH-H--HHHHhhC-CCeEEEEEecCChhhHHH--------hcCCCccceEE
Q 033098 25 TFVSQANNQGCPVVVHFTAIWCMPSVAMNPL-F--EELASAY-PDVLFLSVDVDDVKDVAS--------KLEVKAMPTFL 92 (127)
Q Consensus 25 ~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~-l--~~~~~~~-~~v~~~~vd~~~~~~~~~--------~~~v~~~Pt~~ 92 (127)
+..+.++.+++++++-..-+.|.+|..|..+ + ++.++.. .+++-+.||-++.|++-+ ..|-.++|.-+
T Consensus 103 eaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV 182 (786)
T KOG2244|consen 103 EAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSV 182 (786)
T ss_pred HHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeE
Confidence 3455555589999999999999999888764 3 3344443 245555566666665543 34667888755
Q ss_pred Ee-cC
Q 033098 93 LM-RE 96 (127)
Q Consensus 93 ~~-~~ 96 (127)
+. .+
T Consensus 183 ~LTPd 187 (786)
T KOG2244|consen 183 FLTPD 187 (786)
T ss_pred EeCCC
Confidence 55 44
No 309
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=65.69 E-value=28 Score=24.98 Aligned_cols=77 Identities=10% Similarity=0.125 Sum_probs=47.2
Q ss_pred CChhhhhccHHH----HHHHhhC---C-CeEEEEEecC--Ch-hhHHHhcCCCc--cceEEEecCCeEEEEEecC-CHHH
Q 033098 45 WCMPSVAMNPLF----EELASAY---P-DVLFLSVDVD--DV-KDVASKLEVKA--MPTFLLMREGAVVDKLVGA-NPEE 110 (127)
Q Consensus 45 ~c~~C~~~~~~l----~~~~~~~---~-~v~~~~vd~~--~~-~~~~~~~~v~~--~Pt~~~~~~g~~~~~~~~~-~~~~ 110 (127)
.||.|-+..-.+ .++.+.+ . .+++..+.|- .. ......+|+.+ .|...+|.+|+.+.+..+. -.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 399996555443 3333333 1 2555444432 11 23344667654 6889999999999887666 4688
Q ss_pred HHHHHHHHhhh
Q 033098 111 IRKRIDSFVQS 121 (127)
Q Consensus 111 l~~~i~~~~~~ 121 (127)
++..++++...
T Consensus 343 l~~~i~~~~~~ 353 (361)
T COG0821 343 LEALIEAYAEE 353 (361)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 310
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=65.03 E-value=42 Score=22.95 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=27.5
Q ss_pred hHHHhcCCCccce---EEEecCCeEEEEEecC-CHHHHHHHHHH
Q 033098 78 DVASKLEVKAMPT---FLLMREGAVVDKLVGA-NPEEIRKRIDS 117 (127)
Q Consensus 78 ~~~~~~~v~~~Pt---~~~~~~g~~~~~~~~~-~~~~l~~~i~~ 117 (127)
.+.+.+|+...-+ +++..+|++.+...|. ++++++.+.+.
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k~ 248 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWKC 248 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHHH
Confidence 3455566655443 4444899999998888 88888876553
No 311
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=64.59 E-value=18 Score=19.12 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=33.5
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC---hhhHHHhcCCCccceEEEecCCeEE
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD---VKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
.|+.+.|+.|.+..-.++...- .+.+..+|..+ .++..+......+|++.. .+|..+
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~~l 62 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGFCL 62 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCCEE
Confidence 4667788888888777765432 24445555532 234444445667999965 345433
No 312
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=64.41 E-value=9.4 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=20.1
Q ss_pred CCCChhhhhccHHHHHHHhhCCCeEEEEEe
Q 033098 43 AIWCMPSVAMNPLFEELASAYPDVLFLSVD 72 (127)
Q Consensus 43 ~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd 72 (127)
.+-|..|. +.++++.++||++.+..++
T Consensus 105 ~~pC~SC~---~vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 105 LPPCESCS---NVIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred CCcChhHH---HHHHHHHHHCCCcEEEEec
Confidence 45577776 5888889999998876654
No 313
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=64.30 E-value=24 Score=19.99 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=26.0
Q ss_pred cHHHHHHHhhCCCeEEEEEecCChhhHHHh----cC----CCccceEEEecCCeEE
Q 033098 53 NPLFEELASAYPDVLFLSVDVDDVKDVASK----LE----VKAMPTFLLMREGAVV 100 (127)
Q Consensus 53 ~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~----~~----v~~~Pt~~~~~~g~~~ 100 (127)
...+..+-+. .+|.|-.+|++.+++..+. -+ -..+|.+++ ++.-+
T Consensus 19 ~~~v~~lL~~-k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~i 71 (92)
T cd03030 19 QQEVLGFLEA-KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYC 71 (92)
T ss_pred HHHHHHHHHH-CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEe
Confidence 3344444444 3799999999876544332 23 356787765 55444
No 314
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=64.00 E-value=23 Score=19.62 Aligned_cols=60 Identities=27% Similarity=0.421 Sum_probs=34.5
Q ss_pred HHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 55 LFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 55 ~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
.|++++..++++ ..+-+..+.+.-++. ..-.++.+|..|+++-. |. +.+++.+.++++.+
T Consensus 20 dL~~la~~~~~~---~YePe~fpgl~~r~~-~p~~t~~IF~sGki~it--Gaks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 20 DLEELAEELENV---EYEPERFPGLIYRLR-NPKATVLIFSSGKIVIT--GAKSEEEAKKAIEKILP 80 (86)
T ss_dssp -HHHHHHHSTTE---EEETTTESSEEEEET-TTTEEEEEETTSEEEEE--EESSHHHHHHHHHHHHH
T ss_pred CHHHHHhhccCc---EEeeccCCeEEEeec-CCcEEEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 456666555333 223333333222222 22467889999998865 55 78888887777654
No 315
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=63.58 E-value=24 Score=22.89 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=45.5
Q ss_pred hhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHh----cC-CCccceEEEe-cCCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 48 PSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK----LE-VKAMPTFLLM-REGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 48 ~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~----~~-v~~~Pt~~~~-~~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
.-..|...+..++.....++.+.|.|...+.+.+. |. +...|...++ -||+++.-..|. +...-.++-++++
T Consensus 19 r~~~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~GTt~aaV~l~~~v~ 97 (183)
T PF12617_consen 19 RLAAFERLWQALAPSVPQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGDGTTRAAVKLAQKVL 97 (183)
T ss_pred ccHHHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCCcHHHHHHHHHHHHh
Confidence 34556666677766666788888888876554333 33 3446776666 589988776666 4444445555554
No 316
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=63.45 E-value=16 Score=18.98 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=29.4
Q ss_pred EeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh--hhHHHhcCCCccceEEEecCCeEE
Q 033098 41 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV--KDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 41 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
++.+.|+.|++..-.++...-.+ ....++..+. .++.+......+|++.. +|..+
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~~---e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l 60 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVEY---EDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKKL 60 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCCc---EEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEEE
Confidence 45567888888777776654333 3333443222 11222334557898854 45443
No 317
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=63.31 E-value=7.2 Score=24.67 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=21.9
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCC
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYP 64 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~ 64 (127)
+|+..-||+|-...+.|+++...++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 5678899999999999999988874
No 318
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=62.66 E-value=21 Score=18.77 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=39.1
Q ss_pred EEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC----hhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHH
Q 033098 39 VHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKR 114 (127)
Q Consensus 39 v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~ 114 (127)
..|+.+.++.|++..-.++...-. +....++..+ .+.+.+......+|++.. +|..+. ....|..+
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~-----eS~aI~~Y 71 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTLA-----ESVAILRY 71 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEEE-----cHHHHHHH
Confidence 356778889998887777665433 3444455432 134444456678998863 454332 34455555
Q ss_pred HH
Q 033098 115 ID 116 (127)
Q Consensus 115 i~ 116 (127)
|.
T Consensus 72 l~ 73 (76)
T cd03050 72 LA 73 (76)
T ss_pred HH
Confidence 44
No 319
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=61.15 E-value=22 Score=18.49 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=32.5
Q ss_pred CCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHH
Q 033098 44 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDS 117 (127)
Q Consensus 44 ~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~ 117 (127)
++|++|++..-.|+.. ++.|-.++++... .-....+|++.. +|..+. +...|..++++
T Consensus 14 s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l~-----es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMA-----GIPYEVVFSSNPW----RSPTGKLPFLEL--NGEKIA-----DSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhC-----CCceEEEecCCcc----cCCCcccCEEEE--CCEEEc-----CHHHHHHHHhh
Confidence 5899999988777663 4444444443321 112346898865 454332 33566666543
No 320
>COG3411 Ferredoxin [Energy production and conversion]
Probab=60.90 E-value=24 Score=18.71 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=23.6
Q ss_pred cceEEEecCCeEEEEEecCCHHHHHHHHHHHhhh
Q 033098 88 MPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQS 121 (127)
Q Consensus 88 ~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~~ 121 (127)
=|++++|.+|. + +...+++...+++++++..
T Consensus 17 gPvl~vYpegv--W-Y~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 17 GPVLVVYPEGV--W-YTRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CCEEEEecCCe--e-EeccCHHHHHHHHHHHHhC
Confidence 38999999992 2 2255899999999988763
No 321
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=60.71 E-value=26 Score=20.00 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=23.9
Q ss_pred cceEEEec--CCeEEEEEecCCHHHHHHHHHHHhhh
Q 033098 88 MPTFLLMR--EGAVVDKLVGANPEEIRKRIDSFVQS 121 (127)
Q Consensus 88 ~Pt~~~~~--~g~~~~~~~~~~~~~l~~~i~~~~~~ 121 (127)
=|++++|+ +|.- +...+++++...+++++..
T Consensus 53 gp~vvvyP~~~g~w---y~~v~p~~v~~Iv~~hl~~ 85 (97)
T cd03062 53 AGNVIIYPKGDGIW---YGRVTPEHVPPIVDRLILG 85 (97)
T ss_pred CCEEEEEeCCCeeE---EeecCHHHHHHHHHHHhcC
Confidence 59999999 6633 3355899999999988765
No 322
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=59.39 E-value=58 Score=22.71 Aligned_cols=95 Identities=20% Similarity=0.182 Sum_probs=49.6
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh-------hhHHHhcCCCccceE
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-------KDVASKLEVKAMPTF 91 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-------~~~~~~~~v~~~Pt~ 91 (127)
+.+.|.+.+.............++.+.|..-..-+....+++++. + ++.|=.+.+ -+++++++ .|++
T Consensus 166 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v-D--~miVIGg~~SsNT~kL~eia~~~~---~~t~ 239 (281)
T PF02401_consen 166 SVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEV-D--AMIVIGGKNSSNTRKLAEIAKEHG---KPTY 239 (281)
T ss_dssp -HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCS-S--EEEEES-TT-HHHHHHHHHHHHCT---TCEE
T ss_pred cHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhC-C--EEEEecCCCCccHHHHHHHHHHhC---CCEE
Confidence 445566665554334444444588999999988888899988765 3 333323332 13455554 3555
Q ss_pred EEe----------cCCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 92 LLM----------REGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 92 ~~~----------~~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
++- ++.+.+.-..|. +++.+.+-+-+.+
T Consensus 240 ~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l 278 (281)
T PF02401_consen 240 HIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRL 278 (281)
T ss_dssp EESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH
T ss_pred EeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 543 233455555566 6777766555544
No 323
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=58.38 E-value=26 Score=18.33 Aligned_cols=66 Identities=11% Similarity=0.198 Sum_probs=38.1
Q ss_pred CChhhhhccHHHHHHHhhCCCeEEEEE--e-cCChhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHH
Q 033098 45 WCMPSVAMNPLFEELASAYPDVLFLSV--D-VDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDS 117 (127)
Q Consensus 45 ~c~~C~~~~~~l~~~~~~~~~v~~~~v--d-~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~ 117 (127)
.||+|++..-.++...-.+ .+.++.. + ....+.+.+.-+...+|++.. .+|+++. +...|.++|++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~-~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~-----eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPY-EIKVVPLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVIN-----ESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTC-EEEEEETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEE-----SHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCC-EEEEEeeecCccccChhhhccCcCeEEEEEEE-CCCCEee-----CHHHHHHHHhc
Confidence 5999999998888776554 3444311 0 112245555556667999866 4776443 45666666653
No 324
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=55.71 E-value=54 Score=21.27 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=35.5
Q ss_pred EeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHH
Q 033098 41 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSF 118 (127)
Q Consensus 41 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~ 118 (127)
++...||+|++..-.|....-.+ ....++.+......+......+|++.. .+|..+. ....|.++|.+.
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~---e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~l~-----es~~I~~yL~~~ 71 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV---EKHVLLNDDEETPIRMIGAKQVPILQK-DDGRAMP-----ESLDIVAYFDKL 71 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe---EEEECCCCcchhHHHhcCCCCcceEEe-eCCeEec-----cHHHHHHHHHHh
Confidence 55677999998887776653332 222233323222223333467898753 3554332 334555555443
No 325
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=55.71 E-value=14 Score=25.39 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=33.9
Q ss_pred HHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhh
Q 033098 79 VASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 120 (127)
Q Consensus 79 ~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~ 120 (127)
...+||.+++-||++-.+|++..+.-|.+...+-+.|+..-+
T Consensus 223 wPa~YG~TGVmtF~Vn~~g~VYqkDLG~~t~~~A~ai~~FdP 264 (271)
T PF11453_consen 223 WPAEYGETGVMTFMVNQDGQVYQKDLGPDTAAKAAAITSFDP 264 (271)
T ss_pred eehhhCCCceEEEEECCCCcEEecccCcchHHHhhhhhccCC
Confidence 356789999999999999999988778877777777766543
No 326
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=53.36 E-value=36 Score=19.68 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=12.7
Q ss_pred HHHHHHhhCCCeEEEEEecCChhh
Q 033098 55 LFEELASAYPDVLFLSVDVDDVKD 78 (127)
Q Consensus 55 ~l~~~~~~~~~v~~~~vd~~~~~~ 78 (127)
.+..+-+. .+|.|-.+|+..+++
T Consensus 22 ~v~~iL~a-~kI~fe~vDIa~~e~ 44 (99)
T PF04908_consen 22 RVLMILEA-KKIPFEEVDIAMDEE 44 (99)
T ss_dssp HHHHHHHH-TT--EEEEETTT-HH
T ss_pred HHHHHHHH-cCCCcEEEeCcCCHH
Confidence 34444444 479999999987643
No 327
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=52.73 E-value=32 Score=18.52 Aligned_cols=67 Identities=10% Similarity=0.155 Sum_probs=36.9
Q ss_pred CCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHh---cCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHH
Q 033098 43 AIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK---LEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSF 118 (127)
Q Consensus 43 ~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~---~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~ 118 (127)
.+||++|++..-.|....-.+ .+..++.......... -....+|+++. .+|..+. +...|.++|.+.
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~---~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~-----eS~aI~~yL~~~ 82 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEY---KTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIG-----DSFAIAEYLEEA 82 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCC---eEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEe-----CHHHHHHHHHHh
Confidence 368999999887777654333 3334443332222221 23456898854 3254332 566777776653
No 328
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=52.06 E-value=20 Score=25.62 Aligned_cols=59 Identities=10% Similarity=0.056 Sum_probs=33.1
Q ss_pred CChhhhhccHHHHHHH----hhC----CCeEEEEEecCCh---hhHHHhcCCCcc--ceEEEecCCeEEEEE
Q 033098 45 WCMPSVAMNPLFEELA----SAY----PDVLFLSVDVDDV---KDVASKLEVKAM--PTFLLMREGAVVDKL 103 (127)
Q Consensus 45 ~c~~C~~~~~~l~~~~----~~~----~~v~~~~vd~~~~---~~~~~~~~v~~~--Pt~~~~~~g~~~~~~ 103 (127)
.||.|-+..-.+.+++ +.+ ..+++..+-|-=| ..-..++|+.+- -..++|++|+++...
T Consensus 261 SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv 332 (346)
T TIGR00612 261 ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQ 332 (346)
T ss_pred ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEec
Confidence 4777755544443332 222 2466666655422 222346777653 357788999998764
No 329
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=51.20 E-value=71 Score=21.28 Aligned_cols=70 Identities=14% Similarity=0.065 Sum_probs=42.2
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHh-cCCCccceEEEecCCeEEEE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASK-LEVKAMPTFLLMREGAVVDK 102 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~-~~v~~~Pt~~~~~~g~~~~~ 102 (127)
+|+..++.=|+++.+-...|...-..+.+.--+|.+..++.-..++.... -|+..+|...+..+|.....
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~E 73 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLEE 73 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEEE
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEeccc
Confidence 57777776778999988888888877777755688888887766666554 47888998777777765543
No 330
>PHA02131 hypothetical protein
Probab=50.78 E-value=34 Score=17.52 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=19.9
Q ss_pred CccceEEEecCCeEEEEEecCCHHHHH
Q 033098 86 KAMPTFLLMREGAVVDKLVGANPEEIR 112 (127)
Q Consensus 86 ~~~Pt~~~~~~g~~~~~~~~~~~~~l~ 112 (127)
.++-.++.|++|+++......+...+.
T Consensus 27 ~g~~c~imfk~~~v~dctfk~dtaqfr 53 (70)
T PHA02131 27 FGISCWIMFKNDQVIDCTFKNDTAQFR 53 (70)
T ss_pred cceEEEEEEcCCCEEEeeecCcHHHHh
Confidence 456788999999999877665554443
No 331
>PRK13669 hypothetical protein; Provisional
Probab=49.85 E-value=44 Score=18.48 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=35.5
Q ss_pred HHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhhhh
Q 033098 56 FEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSI 122 (127)
Q Consensus 56 l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~~~ 122 (127)
++.+ +++|++.+...++-..= |. .--..+.+-||+++. +.+++++.+.|.+.+...
T Consensus 20 ~~~L-e~dP~~dVie~gCls~C------G~-C~~~~FAlVng~~V~---a~t~eeL~~kI~~~i~e~ 75 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGYC------GI-CSEGLFALVNGEVVE---GETPEELVENIYAHLEEN 75 (78)
T ss_pred HHHH-HhCCCceEEEcchhhhC------cC-cccCceEEECCeEee---cCCHHHHHHHHHHHHhhc
Confidence 4444 55788888887654321 22 222233445887775 779999999888887653
No 332
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=49.47 E-value=63 Score=20.19 Aligned_cols=35 Identities=9% Similarity=-0.011 Sum_probs=23.9
Q ss_pred CCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEE
Q 033098 34 GCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSV 71 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~v 71 (127)
++...++.--+-|.+|+ ..+..++++. +.+.+...
T Consensus 99 g~~~tm~Vdr~vC~~C~---~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCG---GDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHH---HHHHHHHHHcCCCeEEEEec
Confidence 55566677789999999 6677777776 23554443
No 333
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=49.01 E-value=68 Score=21.69 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=34.5
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD 74 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 74 (127)
+.+++.+.+.....++.-.++. ....+.+.+.++++++|++.|+.+|..
T Consensus 42 ~~~~~~~~i~~~~~~g~dlIi~-------~g~~~~~~~~~vA~~~p~~~F~~~d~~ 90 (258)
T cd06353 42 EGADAERVLRELAAQGYDLIFG-------TSFGFMDAALKVAKEYPDVKFEHCSGY 90 (258)
T ss_pred chHhHHHHHHHHHHcCCCEEEE-------CchhhhHHHHHHHHHCCCCEEEECCCC
Confidence 4556777776654455444442 556778889999999999999998753
No 334
>PRK15113 glutathione S-transferase; Provisional
Probab=48.66 E-value=73 Score=20.66 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=33.6
Q ss_pred CcEEEEEeCC--CChhhhhccHHHHHHHhhCCCeEEEEEecCC----hhhHHHhcCCCccceEEE
Q 033098 35 CPVVVHFTAI--WCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 35 ~~v~v~f~~~--~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 93 (127)
++.+.+++.+ .|++|++..-.+.+..-. +.+..+|... .+++.+..-...+|++..
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~---~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~ 64 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLP---FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH 64 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCccccCHHHHhcCCCCCCCEEEE
Confidence 4556666654 699998887777665433 4445555432 234444444567999864
No 335
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=48.03 E-value=38 Score=21.03 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=14.5
Q ss_pred hhHHHhcCCCccceEEE
Q 033098 77 KDVASKLEVKAMPTFLL 93 (127)
Q Consensus 77 ~~~~~~~~v~~~Pt~~~ 93 (127)
.++++++++..+|.+|-
T Consensus 121 ddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 121 DDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHhCCCcccEEee
Confidence 57899999999998864
No 336
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=47.93 E-value=7.2 Score=24.08 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=11.8
Q ss_pred CCChhhhhccHHHH
Q 033098 44 IWCMPSVAMNPLFE 57 (127)
Q Consensus 44 ~~c~~C~~~~~~l~ 57 (127)
--||+|++..|.|.
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 35999999999874
No 337
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=47.83 E-value=7 Score=24.07 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=11.4
Q ss_pred CChhhhhccHHHH
Q 033098 45 WCMPSVAMNPLFE 57 (127)
Q Consensus 45 ~c~~C~~~~~~l~ 57 (127)
-||+|++..|.|.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 5999999999874
No 338
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=46.01 E-value=70 Score=22.93 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEec
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV 73 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~ 73 (127)
+.+.+.+.+.....++.-.++ ...-.+...+++++.++|++.|+.+|.
T Consensus 82 ~~~~~~~~~~~~a~~g~~lI~-------~~gf~~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 82 SEADYERALRALAEDGYDLIF-------GTGFAFSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred chhHHHHHHHHHHhcCCCEEE-------EeccchhhHHHHHHHHCCCCEEEEecC
Confidence 357777777765545554433 344557778999999999999999996
No 339
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=45.85 E-value=16 Score=24.80 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=29.4
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCC
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEV 85 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v 85 (127)
.+++++ -+.+.++.++.+...++++.+.........++.++...+..+||+
T Consensus 220 ~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 220 RKMTVI--EYDPESEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred cCCceE--EeCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 455553 345667666666666666655443344455555555666666664
No 340
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=45.64 E-value=77 Score=20.05 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCCcEEEEEe-CCCChhhhhccHHHHHHHhhCCCeEEEEEecCC
Q 033098 33 QGCPVVVHFT-AIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 75 (127)
Q Consensus 33 ~~~~v~v~f~-~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 75 (127)
.+|..++..+ +-.-+-|......+++.+.++.++.++.|..|-
T Consensus 43 ~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DL 86 (158)
T COG2077 43 AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDL 86 (158)
T ss_pred CCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCC
Confidence 5666655554 667788998999999999888888888777663
No 341
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=45.37 E-value=41 Score=21.89 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=21.9
Q ss_pred EEEEEeCCCChhhhhccHHHHHHHhhC
Q 033098 37 VVVHFTAIWCMPSVAMNPLFEELASAY 63 (127)
Q Consensus 37 v~v~f~~~~c~~C~~~~~~l~~~~~~~ 63 (127)
.|=+|+..-||+|.-....|+++...+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~ 28 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAW 28 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHh
Confidence 344677888999999999999988765
No 342
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=45.34 E-value=65 Score=22.40 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=31.4
Q ss_pred hhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC
Q 033098 20 VESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD 74 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~ 74 (127)
..++.+.+.....++.-+++. ..-.+...+.+++++||++.|+.+|..
T Consensus 47 ~~~~~~~~~~~~~~g~dlIi~-------~g~~~~~~~~~vA~~yPd~~F~~~d~~ 94 (306)
T PF02608_consen 47 DADYEEAIRQLADQGYDLIIG-------HGFEYSDALQEVAKEYPDTKFIIIDGY 94 (306)
T ss_dssp CHHHHHHHHHHHHTT-SEEEE-------ESGGGHHHHHHHHTC-TTSEEEEESS-
T ss_pred HHHHHHHHHHHHHcCCCEEEE-------ccHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 456777766655466555542 233455678899999999999999864
No 343
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=44.46 E-value=28 Score=23.00 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred CChhhHHHhcCCCccceEEEecCCeEE
Q 033098 74 DDVKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 74 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
|....+.++||++.+|.++. ++|+..
T Consensus 172 dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred cCCchHhhccCceeeceEEE-ecCCEE
Confidence 34567899999999999965 666544
No 344
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=43.80 E-value=1e+02 Score=21.08 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=38.8
Q ss_pred CChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhc-CCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhh
Q 033098 45 WCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL-EVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 120 (127)
Q Consensus 45 ~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~ 120 (127)
+|++|++..-.|++..-. +.+..+|....+....+. -...+|++.. +|..+. ....|..+|.+..+
T Consensus 72 ~cp~s~rV~i~L~ekgi~---ye~~~vdl~~~~~~fl~iNP~GkVPvL~~--d~~~L~-----ES~aI~~YL~e~~p 138 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLP---YDMKLVDLTNKPEWFLKISPEGKVPVVKL--DEKWVA-----DSDVITQALEEKYP 138 (265)
T ss_pred CCcHHHHHHHHHHHcCCC---CEEEEeCcCcCCHHHHhhCCCCCCCEEEE--CCEEEe-----cHHHHHHHHHHHCC
Confidence 499999998888765433 455566665543333333 3456899865 343322 34566666665543
No 345
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=43.70 E-value=51 Score=23.73 Aligned_cols=57 Identities=18% Similarity=0.398 Sum_probs=41.7
Q ss_pred eEEEEEecCChhhHHHhcCCCccceEEEe--cCCeEEEEEecC-CHHHHHHHHHHHhhhh
Q 033098 66 VLFLSVDVDDVKDVASKLEVKAMPTFLLM--REGAVVDKLVGA-NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 66 v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~--~~g~~~~~~~~~-~~~~l~~~i~~~~~~~ 122 (127)
...+..|..+.+.+..-|.+..+|.+.++ .-|+.+++..|. .+++|..-+++++...
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~ 192 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSC 192 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcC
Confidence 44445566667788888899999987666 468888887766 7788877777776543
No 346
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=43.16 E-value=48 Score=16.97 Aligned_cols=50 Identities=8% Similarity=0.047 Sum_probs=26.7
Q ss_pred EeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC----ChhhHHHhcCCCccceEEE
Q 033098 41 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD----DVKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 41 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~ 93 (127)
|+.+.|+.|.+..-.++...-. +....+|.. ..+++.+......+|++..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~gi~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03042 4 YSYFRSSASYRVRIALNLKGLD---YEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI 57 (73)
T ss_pred ecCCCCcchHHHHHHHHHcCCC---CeEEEecCccCCcCChHHHHhCCCCCCCEEEE
Confidence 4455666677665555554322 344445542 2234444445667998854
No 347
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=42.32 E-value=1e+02 Score=20.43 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=26.6
Q ss_pred CCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEec
Q 033098 34 GCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV 73 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~ 73 (127)
+.-.+.+|....|+.|......+.. ....+.++.|+.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a---~~~~~Diylvgs 144 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLA---DNAPLDLYLVGS 144 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhc---CCCceeEEEecC
Confidence 3455667788999999888776632 234699999983
No 348
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=42.29 E-value=61 Score=23.10 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=27.8
Q ss_pred hhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEec
Q 033098 50 VAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMR 95 (127)
Q Consensus 50 ~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 95 (127)
++..|.++++...-+.+.+|..|...+. +.+..+.| ||++|+
T Consensus 21 ~r~DP~ik~Ild~ashva~Y~fd~~~~e--WnKtdiEG--tffvY~ 62 (335)
T KOG2868|consen 21 QRIDPYIKSILDVASHVALYTFDFGANE--WNKTDIEG--TFFVYK 62 (335)
T ss_pred hhhCHHHHHHHhhccceeEEEeccccch--hhhcccee--EEEEEE
Confidence 4566778888777678889988877643 44445555 455663
No 349
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.89 E-value=11 Score=24.42 Aligned_cols=74 Identities=14% Similarity=0.276 Sum_probs=36.5
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh-hhHHHhc----CCCccceEEEecCCeEEEEEecCC
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-KDVASKL----EVKAMPTFLLMREGAVVDKLVGAN 107 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~~~~ 107 (127)
..|+++--+|.+.|.+=.+..-.|+.+ +..+.-||.-+. .....+| -...+|++++ +|..+. +
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~i-----DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~-----e 70 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGI-----DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLT-----E 70 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCC-----CcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEee-----h
Confidence 457887777777776644444333333 222333332221 1112222 2457999877 665443 2
Q ss_pred HHHHHHHHHHH
Q 033098 108 PEEIRKRIDSF 118 (127)
Q Consensus 108 ~~~l~~~i~~~ 118 (127)
.-.+..++++.
T Consensus 71 S~AII~YLeEt 81 (217)
T KOG0868|consen 71 SLAIIEYLEET 81 (217)
T ss_pred HHHHHHHHHhc
Confidence 33444445443
No 350
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=41.59 E-value=75 Score=18.80 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=45.0
Q ss_pred cChhhHHHHHHHhhc--CCCcEEEEE---eCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccc
Q 033098 18 DSVESWETFVSQANN--QGCPVVVHF---TAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMP 89 (127)
Q Consensus 18 ~~~~~~~~~~~~~~~--~~~~v~v~f---~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 89 (127)
+|+..+++.+..... ..+.+++.+ ++..+-.+.-..-.++.+.+. ++.-+.+-.....+++-++...++|
T Consensus 3 KNP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~~--~i~~viv~G~Ra~DmalRLkyAGv~ 77 (113)
T PF08353_consen 3 KNPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLADP--NIKQVIVSGTRAEDMALRLKYAGVD 77 (113)
T ss_pred cCcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhcC--CCCEEEEEeeeHHHHHhHeeecCcc
Confidence 567777777665422 333333322 345555566666678888644 4666677777788888888888887
No 351
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=41.36 E-value=64 Score=17.93 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=25.8
Q ss_pred hhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhh
Q 033098 77 KDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 120 (127)
Q Consensus 77 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~ 120 (127)
...+.++|+.++ +--..+|.+.....| +.+++++|++.+..
T Consensus 24 ~~~A~~~gl~G~--V~N~~dg~V~i~~~G-~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 24 KRIARKLGLTGW--VRNLPDGSVEIEAEG-EEEQLEEFIKWLKK 64 (91)
T ss_dssp HHHHHHTT-EEE--EEE-TTSEEEEEEEE-EHHHHHHHHHHHHH
T ss_pred HHHHHHhCCceE--EEECCCCEEEEEEEe-CHHHHHHHHHHHHh
Confidence 356788888887 333378877766666 55667776666654
No 352
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=41.08 E-value=49 Score=19.44 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=14.3
Q ss_pred hhHHHhcCCCccceEEE
Q 033098 77 KDVASKLEVKAMPTFLL 93 (127)
Q Consensus 77 ~~~~~~~~v~~~Pt~~~ 93 (127)
.++++++|+..+|.+|-
T Consensus 83 ddLa~rL~l~hYPvLit 99 (105)
T TIGR03765 83 DDLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHhCCCcccEEEe
Confidence 47889999999998854
No 353
>PHA02151 hypothetical protein
Probab=40.12 E-value=22 Score=22.58 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=11.4
Q ss_pred CCCcEEEEEeCCCCh
Q 033098 33 QGCPVVVHFTAIWCM 47 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~ 47 (127)
++.--.|+||..||.
T Consensus 202 r~h~~~v~fy~kwct 216 (217)
T PHA02151 202 RNHDRYVHFYKKWCT 216 (217)
T ss_pred ccCceEEEEehhhcc
Confidence 344568999999994
No 354
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=40.07 E-value=1.2e+02 Score=20.61 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=35.3
Q ss_pred CcEEEEEeCCCChhhhhccHHHHHHHhhCCC--eEEEEEecCChhhHHHhcC-C-CccceEEEecCCeEE
Q 033098 35 CPVVVHFTAIWCMPSVAMNPLFEELASAYPD--VLFLSVDVDDVKDVASKLE-V-KAMPTFLLMREGAVV 100 (127)
Q Consensus 35 ~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~~~~~~~~-v-~~~Pt~~~~~~g~~~ 100 (127)
...++-+|+ ||+.++..-.|.. ++ ..++.+|...-+++..+.+ + ..+|.++. ||+++
T Consensus 9 ~vrL~~~w~--sPfa~R~~iaL~~-----KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~H--n~k~i 69 (231)
T KOG0406|consen 9 TVKLLGMWF--SPFAQRVRIALKL-----KGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEH--NGKPI 69 (231)
T ss_pred eEEEEEeec--ChHHHHHHHHHHh-----cCCceEEEecCCCCCCHHHHHhccccccCCEEEE--CCcee
Confidence 344444443 9998877644432 34 5666667665567766666 4 46999877 66664
No 355
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.97 E-value=1.2e+02 Score=20.55 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=35.2
Q ss_pred CCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcC-CCccceE-EEecCCeEEE
Q 033098 44 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLE-VKAMPTF-LLMREGAVVD 101 (127)
Q Consensus 44 ~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~~ 101 (127)
|.|+.+++....|.+. ++.|...|+-.+.++.+... ...+||| -+|-+|..+.
T Consensus 152 P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 152 PKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred ccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEecc
Confidence 5688778777777664 67788889888888776554 3345553 2234776654
No 356
>PLN00062 TATA-box-binding protein; Provisional
Probab=39.94 E-value=96 Score=20.06 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=21.8
Q ss_pred eEEEecCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 90 TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 90 t~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
++.+|..|+++-. |. +.+++.+.++.+++
T Consensus 140 ~~liF~sGkvvit--Gaks~~~~~~ai~~i~p 169 (179)
T PLN00062 140 VLLIFVSGKIVIT--GAKVREEIYTAFENIYP 169 (179)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 5778889988865 55 78888888777654
No 357
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=39.93 E-value=80 Score=19.91 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCCChhhhhccHHHHHHHhhCC--CeEEEEEec
Q 033098 34 GCPVVVHFTAIWCMPSVAMNPLFEELASAYP--DVLFLSVDV 73 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~--~v~~~~vd~ 73 (127)
+..+.+.++++.++.|.-+...++.+++.+. +|.+-.++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 4567788889998999999999999999984 455555543
No 358
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=39.39 E-value=1.3e+02 Score=20.99 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=52.8
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEec-CCh-h---hHHHhcCCCccceEEE
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDV-DDV-K---DVASKLEVKAMPTFLL 93 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~-~~~-~---~~~~~~~v~~~Pt~~~ 93 (127)
+.+.|...+.....+....-+.++.+.|..-+.-+....+++.+. ++-++.-+- ..| . ++++..| .|++.+
T Consensus 165 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~v-D~miVVGg~nSsNT~rL~ei~~~~~---~~t~~I 240 (280)
T TIGR00216 165 SQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEV-DLMIVIGGKNSSNTTRLYEIAEEHG---PPSYLI 240 (280)
T ss_pred cHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhC-CEEEEECCCCCchHHHHHHHHHHhC---CCEEEE
Confidence 455666665544212110334467889999888888899998775 332222221 122 2 3455554 566654
Q ss_pred e----------cCCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 94 M----------REGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 94 ~----------~~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
- ++.+.+.-..|. +++.+.+-+-+.+
T Consensus 241 e~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l 277 (280)
T TIGR00216 241 ETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKI 277 (280)
T ss_pred CChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 3 233445555566 6776665554443
No 359
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=39.09 E-value=76 Score=18.13 Aligned_cols=67 Identities=18% Similarity=0.394 Sum_probs=34.2
Q ss_pred CChhhhhccH------HH-HHHHhhCC--CeEEEEEecCChh------hHHHhcCC--CccceEEEecCCeEEEEEecC-
Q 033098 45 WCMPSVAMNP------LF-EELASAYP--DVLFLSVDVDDVK------DVASKLEV--KAMPTFLLMREGAVVDKLVGA- 106 (127)
Q Consensus 45 ~c~~C~~~~~------~l-~~~~~~~~--~v~~~~vd~~~~~------~~~~~~~v--~~~Pt~~~~~~g~~~~~~~~~- 106 (127)
-|+.|..+-. .| ..+.++|+ .+.|-+||+...+ ++.++..- --+|.+++ +|.++.. |.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~E--Gnp 83 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVAE--GNP 83 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEEE--SS-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEec--CCc
Confidence 4877765433 34 33467785 3889999987643 23333322 23687766 8888865 33
Q ss_pred CHHHHHHHH
Q 033098 107 NPEEIRKRI 115 (127)
Q Consensus 107 ~~~~l~~~i 115 (127)
.-..+-+++
T Consensus 84 ~LK~I~~~~ 92 (93)
T PF07315_consen 84 QLKDIYEEM 92 (93)
T ss_dssp -HHHHHHHH
T ss_pred cHHHHHHhh
Confidence 444444443
No 360
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=38.99 E-value=70 Score=17.66 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=35.7
Q ss_pred HHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhhhh
Q 033098 54 PLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSI 122 (127)
Q Consensus 54 ~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~~~ 122 (127)
..++.+. +.+++.+...++-..= |.-.... +.+-||+++. +.+++++.+.|.+.+...
T Consensus 18 ~~~~~Le-~~p~~~Vie~gCl~~C------g~C~~~p-FAlVnG~~V~---A~t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 18 QVYEKLE-KDPDIDVIEYGCLSYC------GPCAKKP-FALVNGEIVA---AETAEELLEKIKEKIEEN 75 (78)
T ss_pred HHHHHHh-cCCCccEEEcChhhhC------cCCCCCc-cEEECCEEEe---cCCHHHHHHHHHHHHhcc
Confidence 3455554 3478887777654321 2222222 2344787775 779999999998887654
No 361
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=38.54 E-value=1e+02 Score=19.72 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=22.1
Q ss_pred eEEEecCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 90 TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 90 t~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
++.+|..|+++-. |. +.+++.+.++.+.+
T Consensus 141 t~lIF~sGkvvit--Gaks~~~~~~a~~~i~~ 170 (174)
T cd00652 141 VLLIFVSGKIVIT--GAKSREDIYEAVEKIYP 170 (174)
T ss_pred EEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 5778889988865 55 78888888877654
No 362
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=38.53 E-value=1e+02 Score=19.76 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=22.8
Q ss_pred eEEEecCCeEEEEEecC-CHHHHHHHHHHHhhh
Q 033098 90 TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 90 t~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
++.+|..|+++-. |. +.+++.+.++.+++-
T Consensus 140 ~~liF~sGkvvit--Gaks~~~~~~a~~~i~p~ 170 (174)
T cd04516 140 VLLIFVSGKIVLT--GAKSREEIYQAFENIYPI 170 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 4777889988865 55 888888888877653
No 363
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=38.13 E-value=1.1e+02 Score=19.70 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=22.7
Q ss_pred eEEEecCCeEEEEEecC-CHHHHHHHHHHHhhh
Q 033098 90 TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 90 t~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
++.+|..|+++-. |. +.+++.+.++.+++-
T Consensus 141 t~lIF~sGkivit--Gaks~~~~~~a~~~i~pi 171 (174)
T cd04517 141 TLSIFSTGSVTVT--GARSMEDVREAVEKIYPI 171 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 5777788888754 55 789998888887653
No 364
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=38.02 E-value=63 Score=16.86 Aligned_cols=56 Identities=9% Similarity=-0.065 Sum_probs=29.9
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcC-CCccceEEEecCCeEE
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLE-VKAMPTFLLMREGAVV 100 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~Pt~~~~~~g~~~ 100 (127)
.+|.+-|+.|++..-.|....-. .....++.+.........+ ...+|++.. +|..+
T Consensus 4 Ly~~~~~~~~~~v~~~L~~~~i~---~e~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~l 60 (73)
T cd03076 4 LTYFPVRGRAEAIRLLLADQGIS---WEEERVTYEEWQESLKPKMLFGQLPCFKD--GDLTL 60 (73)
T ss_pred EEEeCCcchHHHHHHHHHHcCCC---CEEEEecHHHhhhhhhccCCCCCCCEEEE--CCEEE
Confidence 45556788898777777665433 3334444332222222333 456898854 45443
No 365
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=37.93 E-value=1.1e+02 Score=19.66 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=22.6
Q ss_pred eEEEecCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 90 TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 90 t~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
++.+|..|+++-. |. +.+++...++++.+
T Consensus 140 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~ 169 (174)
T cd04518 140 VLLLFSSGKMVIT--GAKSEEDAKRAVEKLLS 169 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 6788899998865 55 88888888877754
No 366
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=37.74 E-value=1.8e+02 Score=22.08 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCcEEEEEeCCCChh-hhhccHHHHHHHhhCC--CeEEEEEe-cCChhhHHHhcCCCccc
Q 033098 33 QGCPVVVHFTAIWCMP-SVAMNPLFEELASAYP--DVLFLSVD-VDDVKDVASKLEVKAMP 89 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~-C~~~~~~l~~~~~~~~--~v~~~~vd-~~~~~~~~~~~~v~~~P 89 (127)
+-..++|+|+.+.... -......+.++..+++ ++.++.+. ..-....+-+.|+...|
T Consensus 280 ~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~ 340 (499)
T PF05679_consen 280 NVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFP 340 (499)
T ss_pred ceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCC
Confidence 3356788888744333 2335567778888875 46666665 22222333445555444
No 367
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=35.76 E-value=54 Score=21.12 Aligned_cols=55 Identities=24% Similarity=0.223 Sum_probs=33.4
Q ss_pred CCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEE
Q 033098 11 KSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFL 69 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~ 69 (127)
..+-..+ +..++-+++..+ ...||+|.|=...-.---.-...|+.++. ++++.++
T Consensus 32 ~GNPT~l-sG~elV~lIk~a--~~DPV~VMfDD~G~~g~G~GE~Al~~v~~-h~~IeVL 86 (180)
T PF14097_consen 32 AGNPTPL-SGEELVELIKQA--PHDPVLVMFDDKGFIGEGPGEQALEYVAN-HPDIEVL 86 (180)
T ss_pred CCCCCcC-CHHHHHHHHHhC--CCCCEEEEEeCCCCCCCCccHHHHHHHHc-CCCceEE
Confidence 3444556 888999999988 78999998865433222222334455443 2455543
No 368
>PLN02378 glutathione S-transferase DHAR1
Probab=35.70 E-value=1e+02 Score=20.08 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=37.6
Q ss_pred CCChhhhhccHHHHHHHhhCCCeEEEEEecCChh-hHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHh
Q 033098 44 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK-DVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFV 119 (127)
Q Consensus 44 ~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~ 119 (127)
.+|++|++..-.|+...-. +.+..+|....+ ++.+......+|++.. +|..+. ....|..+|.+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~l~inP~G~VPvL~~--~~~~l~-----ES~aI~~YL~~~~ 84 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLT---YKIHLINLSDKPQWFLDISPQGKVPVLKI--DDKWVT-----DSDVIVGILEEKY 84 (213)
T ss_pred CCCcchHHHHHHHHHcCCC---CeEEEeCcccCCHHHHHhCCCCCCCEEEE--CCEEec-----CHHHHHHHHHHhC
Confidence 3499999998777665433 444556654333 3434334556898853 443322 3455666665543
No 369
>PRK00394 transcription factor; Reviewed
Probab=35.66 E-value=1.2e+02 Score=19.52 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=22.1
Q ss_pred eEEEecCCeEEEEEecC-CHHHHHHHHHHHhh
Q 033098 90 TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQ 120 (127)
Q Consensus 90 t~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~ 120 (127)
++.+|..|+++-. |. +.+++...++.+.+
T Consensus 141 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~ 170 (179)
T PRK00394 141 VVLLFGSGKLVIT--GAKSEEDAEKAVEKILE 170 (179)
T ss_pred EEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 6788899988865 66 78888887777654
No 370
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=35.55 E-value=52 Score=21.86 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=19.9
Q ss_pred ChhhHHHhcCCCccceEEEe-cCCeEE
Q 033098 75 DVKDVASKLEVKAMPTFLLM-REGAVV 100 (127)
Q Consensus 75 ~~~~~~~~~~v~~~Pt~~~~-~~g~~~ 100 (127)
....+.++||++.+|.++.- ++|+..
T Consensus 171 Q~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 171 QNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred CcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 44568999999999999762 666554
No 371
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=35.11 E-value=90 Score=20.14 Aligned_cols=28 Identities=7% Similarity=0.054 Sum_probs=17.2
Q ss_pred EecChhhHHHHHHHhhcCCCcEEEEEeC
Q 033098 16 KVDSVESWETFVSQANNQGCPVVVHFTA 43 (127)
Q Consensus 16 ~i~~~~~~~~~~~~~~~~~~~v~v~f~~ 43 (127)
.+.+.+++.+.+.++...+.+.+|.+..
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~~ 183 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVLS 183 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 3556666666666665556666666654
No 372
>PF11539 DUF3228: Protein of unknown function (DUF3228); InterPro: IPR021610 This family of proteins has no known function. ; PDB: 2PD0_B 4FBD_B.
Probab=34.34 E-value=37 Score=22.19 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=24.1
Q ss_pred hhhcCCCceEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChh
Q 033098 6 QEQQNKSRVVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMP 48 (127)
Q Consensus 6 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~ 48 (127)
.+....+..... +.++|.+.+.+....+..-++.=|||.|.+
T Consensus 14 d~~~y~gt~I~~-~ke~F~~kvne~~~~~~~~l~dGYAPFCKH 55 (197)
T PF11539_consen 14 DDPNYGGTRIPC-DKEEFVEKVNEIYKEGPAKLVDGYAPFCKH 55 (197)
T ss_dssp STT--SS----S--HHHHHHHHHHHHHCCT--EEE-SSTTEEE
T ss_pred cCCCCCcceecc-CHHHHHHHHHHHHhcCCCccccccCcceee
Confidence 334445555555 889999988876545667799999999966
No 373
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=33.60 E-value=1.7e+02 Score=20.64 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChh----hHHHhcCCCccceEEEe
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVK----DVASKLEVKAMPTFLLM 94 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~ 94 (127)
+.+.|.+.+.....+..-+.+.++.+.|..-..-+....+++++.+-+.++.-.-..|. +++++++ .|++.+-
T Consensus 167 ~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~---~~t~~Ie 243 (298)
T PRK01045 167 SVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAG---APAYLID 243 (298)
T ss_pred cHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHC---CCEEEEC
Confidence 45566666655432333333344889999988888888888877532332222112222 3455544 4555432
Q ss_pred ----------cCCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 95 ----------REGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 95 ----------~~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
.+-..+.-..|. +++.+.+-+-..+
T Consensus 244 ~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 244 DASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred ChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 223345555566 6766655544433
No 374
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=33.03 E-value=53 Score=17.23 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=24.7
Q ss_pred CCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCC
Q 033098 43 AIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVK 86 (127)
Q Consensus 43 ~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~ 86 (127)
...||.|.... +.+++.++.+ .+|-+ .+++++++|++
T Consensus 15 ~~~CP~Cgs~~-----~T~~W~G~vi-I~dPe-~S~IAk~l~i~ 51 (61)
T PRK08351 15 EDRCPVCGSRD-----LSDEWFDLVI-IIDVE-NSRIAKKLGAK 51 (61)
T ss_pred CCcCCCCcCCc-----cccccccEEE-EeCCc-HhHHHHHhCCC
Confidence 45699998744 5666666443 45544 56889999873
No 375
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=32.80 E-value=1.2e+02 Score=18.43 Aligned_cols=15 Identities=13% Similarity=-0.040 Sum_probs=9.3
Q ss_pred CCcEEEEEeCCCChh
Q 033098 34 GCPVVVHFTAIWCMP 48 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~ 48 (127)
.+.+++.+++....+
T Consensus 51 ~d~vvi~lGtNd~~~ 65 (150)
T cd01840 51 RKTVVIGLGTNGPFT 65 (150)
T ss_pred CCeEEEEecCCCCCC
Confidence 456667777766643
No 376
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=32.43 E-value=1e+02 Score=21.95 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=29.5
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEec
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVDV 73 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~ 73 (127)
.|||+++.|-...-+.++.+...+.+.+++. +++-++.+..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 6788877555555677888888998888876 4666666553
No 377
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=32.04 E-value=1.4e+02 Score=19.41 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=22.6
Q ss_pred eEEEecCCeEEEEEecC-CHHHHHHHHHHHhhh
Q 033098 90 TFLLMREGAVVDKLVGA-NPEEIRKRIDSFVQS 121 (127)
Q Consensus 90 t~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~~~ 121 (127)
++++|..|+++-. |. +.+++...++++...
T Consensus 55 a~LIF~SGK~VcT--GaKs~ed~~~av~~~~~~ 85 (185)
T COG2101 55 AALIFRSGKVVCT--GAKSVEDVHRAVKKLAKK 85 (185)
T ss_pred eEEEEecCcEEEe--ccCcHHHHHHHHHHHHHH
Confidence 6778899998865 66 788888877776554
No 378
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=31.81 E-value=72 Score=15.73 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=23.5
Q ss_pred EEEecCCeEEEEEecC---CHHHHHHHHHHHhhhh
Q 033098 91 FLLMREGAVVDKLVGA---NPEEIRKRIDSFVQSI 122 (127)
Q Consensus 91 ~~~~~~g~~~~~~~~~---~~~~l~~~i~~~~~~~ 122 (127)
|.+.++|++-....|. +=.++.+.|++.++..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG~v 37 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEALGTV 37 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHhCce
Confidence 5667999998888777 3377777788777643
No 379
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=31.70 E-value=68 Score=17.81 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=17.7
Q ss_pred CCceEEecChhhHHHHHHHh
Q 033098 11 KSRVVKVDSVESWETFVSQA 30 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~ 30 (127)
.+.+..|+|+++|.+.++.+
T Consensus 50 ~gDLLPInNDdNf~kAlssa 69 (80)
T cd06403 50 HGDLLPINNDDNFLKALSSA 69 (80)
T ss_pred CCCEecccCcHHHHHHHHcC
Confidence 68899999999999999954
No 380
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=31.50 E-value=52 Score=19.06 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=21.0
Q ss_pred CCeEEEEEecC-CHHHHHHHHHHHhhhhccc
Q 033098 96 EGAVVDKLVGA-NPEEIRKRIDSFVQSIRVY 125 (127)
Q Consensus 96 ~g~~~~~~~~~-~~~~l~~~i~~~~~~~~~~ 125 (127)
+|-++..+... +.+.|.+|++.+....++.
T Consensus 2 ~~DVi~~~~~i~Nl~kl~~Fi~nv~~~k~d~ 32 (98)
T PF14275_consen 2 NNDVINKHGEIENLDKLDQFIENVEQGKPDK 32 (98)
T ss_pred CCCEEEeCCeEEeHHHHHHHHHHHhcCCCCE
Confidence 45566555455 8999999999887655443
No 381
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.87 E-value=1.3e+02 Score=19.83 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=28.4
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhC--CCeEEEEEe
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAY--PDVLFLSVD 72 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~--~~v~~~~vd 72 (127)
+.+.++...-.+.|--|+.....|.++..-. .++..+.+-
T Consensus 50 ~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 50 ERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred cCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4566777777899999999999988774322 355555443
No 382
>PRK14430 acylphosphatase; Provisional
Probab=30.82 E-value=1.1e+02 Score=17.35 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=24.4
Q ss_pred hhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHH
Q 033098 77 KDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSF 118 (127)
Q Consensus 77 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~ 118 (127)
...+.++|+.++-.- ..+|.+.....| +.+.++++++.+
T Consensus 24 ~~~A~~lgl~G~VrN--~~dGsVei~~qG-~~~~i~~f~~~l 62 (92)
T PRK14430 24 ADAADDLGLGGWVRN--RADGTVEVMASG-TVRQLEALRAWM 62 (92)
T ss_pred HHHHHHhCCEEEEEE--CCCCcEEEEEEc-CHHHHHHHHHHH
Confidence 356778888876432 267866655545 556666666665
No 383
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=30.45 E-value=32 Score=19.77 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.4
Q ss_pred EeCCCChhhhhccHHHHHHHhhC
Q 033098 41 FTAIWCMPSVAMNPLFEELASAY 63 (127)
Q Consensus 41 f~~~~c~~C~~~~~~l~~~~~~~ 63 (127)
||-+|..+-++.++.++++.++.
T Consensus 32 ~ylswakpykrahesieklsnks 54 (126)
T PF13120_consen 32 FYLSWAKPYKRAHESIEKLSNKS 54 (126)
T ss_pred eeeeecChhhHHHhHHHHhcccC
Confidence 46689999999999999998764
No 384
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=30.42 E-value=1.2e+02 Score=17.62 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=15.6
Q ss_pred EEEEeCCCChhhhhc-cHHHHH
Q 033098 38 VVHFTAIWCMPSVAM-NPLFEE 58 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~-~~~l~~ 58 (127)
|-.||-+-||.|+++ ...|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 456888999999987 345654
No 385
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=30.02 E-value=1.3e+02 Score=17.99 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.4
Q ss_pred HHhcCCCccceEEEe
Q 033098 80 ASKLEVKAMPTFLLM 94 (127)
Q Consensus 80 ~~~~~v~~~Pt~~~~ 94 (127)
+-.+|++.+|.+++.
T Consensus 76 Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD 90 (114)
T ss_pred HHHhCccccCEEEEc
Confidence 456899999999885
No 386
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=29.76 E-value=1.5e+02 Score=22.42 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=27.9
Q ss_pred HHHHhhcCCCcEEEEEe--CCCChhhhhccHHHHHHHhhCCCeEEEEEecCC
Q 033098 26 FVSQANNQGCPVVVHFT--AIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD 75 (127)
Q Consensus 26 ~~~~~~~~~~~v~v~f~--~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~ 75 (127)
.+.+...-+||.+|..= .|....|+.+. +++.++| ++.++.+||..
T Consensus 172 vI~ELk~igKPFvillNs~~P~s~et~~L~---~eL~ekY-~vpVlpvnc~~ 219 (492)
T PF09547_consen 172 VIEELKEIGKPFVILLNSTKPYSEETQELA---EELEEKY-DVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHhCCCEEEEEeCCCCCCHHHHHHH---HHHHHHh-CCcEEEeehHH
Confidence 34444346777766443 34455555444 5556667 78888999875
No 387
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=29.45 E-value=1e+02 Score=17.13 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=18.0
Q ss_pred hHHHhcCCCccceEEEecCCeEEE
Q 033098 78 DVASKLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 78 ~~~~~~~v~~~Pt~~~~~~g~~~~ 101 (127)
..++.|++...+++++..+|..+.
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEc
Confidence 456778887666788889998874
No 388
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=29.31 E-value=1.1e+02 Score=18.99 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=24.2
Q ss_pred ceEEEe-cCCe-EEEEEecCCHHHHHHHHHHHhhhhc
Q 033098 89 PTFLLM-REGA-VVDKLVGANPEEIRKRIDSFVQSIR 123 (127)
Q Consensus 89 Pt~~~~-~~g~-~~~~~~~~~~~~l~~~i~~~~~~~~ 123 (127)
|...+| .+|+ ++....+.+.++|++.|.+.+++..
T Consensus 75 PF~R~YlddGr~vL~Dld~~~r~eI~~hl~K~lGKte 111 (169)
T KOG4079|consen 75 PFARAYLDDGREVLFDLDGMKREEIEKHLAKTLGKTE 111 (169)
T ss_pred hHHHheecCcceEEEEcccccHHHHHHHHHHHhCccH
Confidence 333344 5564 5566667799999999999887754
No 389
>PRK11752 putative S-transferase; Provisional
Probab=28.85 E-value=1.9e+02 Score=19.65 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=35.8
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHH-HhhCC--CeEEEEEecCC----hhhHHHhcCCCccceEEE
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEEL-ASAYP--DVLFLSVDVDD----VKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~-~~~~~--~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 93 (127)
.++.-+- +|...|+.|++..-.|+++ +...+ .+.+..+|... .+++.+..-...+|+++.
T Consensus 40 ~~~~~~~-Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 40 VGKHPLQ-LYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred CCCCCeE-EecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 3444333 4445699999999888885 22222 35556666543 234544445567999965
No 390
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=28.28 E-value=1.5e+02 Score=21.09 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh
Q 033098 34 GCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV 76 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 76 (127)
...++|.+. |+.|++....|+.+......+.++.||+...
T Consensus 76 ~~~~lIELG---sG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 76 SGSMLVELG---SGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred CCCEEEEEC---CCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 344677775 6888888888888875444689999998863
No 391
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=27.66 E-value=1e+02 Score=16.23 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=38.7
Q ss_pred EeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC----ChhhHHHhcCCCccceEEEecC--CeEEEEEecCCHHHHHHH
Q 033098 41 FTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD----DVKDVASKLEVKAMPTFLLMRE--GAVVDKLVGANPEEIRKR 114 (127)
Q Consensus 41 f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~~~~~~~l~~~ 114 (127)
+|...++.|++..-.++...-. +....++.. ..+++.+......+|++.. .+ |..+. ....|..+
T Consensus 4 Ly~~~~~~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~g~~l~-----eS~aI~~y 74 (81)
T cd03048 4 LYTHGTPNGFKVSIMLEELGLP---YEIHPVDISKGEQKKPEFLKINPNGRIPAIVD-HNGTPLTVF-----ESGAILLY 74 (81)
T ss_pred EEeCCCCChHHHHHHHHHcCCC---cEEEEecCcCCcccCHHHHHhCcCCCCCEEEe-CCCCceEEE-----cHHHHHHH
Confidence 4433358998888877776443 333344432 2234444445567999854 32 43322 45666677
Q ss_pred HHHHh
Q 033098 115 IDSFV 119 (127)
Q Consensus 115 i~~~~ 119 (127)
|.+..
T Consensus 75 L~~~~ 79 (81)
T cd03048 75 LAEKY 79 (81)
T ss_pred HHHHh
Confidence 66543
No 392
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.64 E-value=1.3e+02 Score=17.26 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=25.2
Q ss_pred CCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEe
Q 033098 34 GCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVD 72 (127)
Q Consensus 34 ~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd 72 (127)
.++-+|-+...+.+....+....+.+.+..+++.++.-.
T Consensus 50 ~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 50 ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGG 88 (121)
T ss_dssp TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 356667677767777777766666666666775555444
No 393
>PLN02473 glutathione S-transferase
Probab=27.23 E-value=1.8e+02 Score=18.71 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=34.2
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC----hhhHHHhcCCCccceEEEecCCeEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
+-.++.+.|+.|++..-.|++..-. ..+..+|..+ .++.........+|+++. +|..+
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~---ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l 64 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIE---FEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLKL 64 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCC---ceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEEE
Confidence 3345566788888887666664322 4455566542 344444445678999853 55444
No 394
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=27.17 E-value=51 Score=19.28 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=12.6
Q ss_pred CCCChhhhhccHHHHHH
Q 033098 43 AIWCMPSVAMNPLFEEL 59 (127)
Q Consensus 43 ~~~c~~C~~~~~~l~~~ 59 (127)
.+.|+.|.+-...+.+.
T Consensus 31 ~s~Cp~C~kkraeLa~~ 47 (104)
T PF15379_consen 31 SSQCPSCNKKRAELAQS 47 (104)
T ss_pred cccChHHHHHHHHHHHH
Confidence 45799999887776543
No 395
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=26.90 E-value=1.4e+02 Score=17.32 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=37.5
Q ss_pred EeCCCChhhhhccH-------HHHHHHhhCCCeEEEEEecCChhhHHHhcCCCc-cceEEEecCCeEEEEEecCCHHHHH
Q 033098 41 FTAIWCMPSVAMNP-------LFEELASAYPDVLFLSVDVDDVKDVASKLEVKA-MPTFLLMREGAVVDKLVGANPEEIR 112 (127)
Q Consensus 41 f~~~~c~~C~~~~~-------~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~g~~~~~~~~~~~~~l~ 112 (127)
|....|+.|..+.. ..+.....|.|+..+. |- +...+++..++.. +|-.+.. ...|.-++++.
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G~i~i~-dP-~~SwVAk~l~i~~~~pG~YAi-------~V~g~lp~~i~ 88 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEGIIALM-DP-EKSWVARWQRIDKFVPGIYAI-------SVSGRLPEDIV 88 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcceEEEEE-CC-chhHHHHHhCCCCCCCCeEEE-------EecCcCCHHHH
Confidence 77889999964322 1223344555655443 32 2356777778763 3444333 34455566666
Q ss_pred HHHHH
Q 033098 113 KRIDS 117 (127)
Q Consensus 113 ~~i~~ 117 (127)
..++.
T Consensus 89 ~~l~~ 93 (98)
T cd07973 89 EELES 93 (98)
T ss_pred HHHHH
Confidence 55543
No 396
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=26.84 E-value=60 Score=19.35 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=12.3
Q ss_pred HHhcCCCccceEEEe
Q 033098 80 ASKLEVKAMPTFLLM 94 (127)
Q Consensus 80 ~~~~~v~~~Pt~~~~ 94 (127)
+-.+|++++|.+++.
T Consensus 77 Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 77 AWQLGVTKIPAVVVD 91 (113)
T ss_pred HHHcCCccCCEEEEc
Confidence 346899999999885
No 397
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=26.31 E-value=21 Score=24.69 Aligned_cols=6 Identities=17% Similarity=0.556 Sum_probs=3.8
Q ss_pred CChhhh
Q 033098 45 WCMPSV 50 (127)
Q Consensus 45 ~c~~C~ 50 (127)
|||.|+
T Consensus 267 ~CP~CQ 272 (273)
T COG0266 267 YCPVCQ 272 (273)
T ss_pred eCCCCC
Confidence 566665
No 398
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.25 E-value=1.8e+02 Score=18.52 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=25.9
Q ss_pred cCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC
Q 033098 32 NQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP 64 (127)
Q Consensus 32 ~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~ 64 (127)
++..+.++..|.-.|.+.-...|.+-.-.+.|.
T Consensus 77 yrsahalilvydiscqpsfdclpewlreie~ya 109 (213)
T KOG0095|consen 77 YRSAHALILVYDISCQPSFDCLPEWLREIEQYA 109 (213)
T ss_pred hhhcceEEEEEecccCcchhhhHHHHHHHHHHh
Confidence 366788899999999998888888755556663
No 399
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=26.08 E-value=1.6e+02 Score=17.72 Aligned_cols=34 Identities=15% Similarity=0.399 Sum_probs=25.8
Q ss_pred CccceEEEecCCeEEEEEecC-CHHHHHHHHHHHh
Q 033098 86 KAMPTFLLMREGAVVDKLVGA-NPEEIRKRIDSFV 119 (127)
Q Consensus 86 ~~~Pt~~~~~~g~~~~~~~~~-~~~~l~~~i~~~~ 119 (127)
.++|.+++|+.-+-++-..-. ++..+.+-+++..
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r~ 115 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEERC 115 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHhC
Confidence 589999999887777666544 8888888777643
No 400
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=25.99 E-value=1.4e+02 Score=20.06 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=22.2
Q ss_pred EecChhhHHHHHHHhhcCCCcEEEEEeCC
Q 033098 16 KVDSVESWETFVSQANNQGCPVVVHFTAI 44 (127)
Q Consensus 16 ~i~~~~~~~~~~~~~~~~~~~v~v~f~~~ 44 (127)
.+.+.+++.+.+..+...+.+.+|.+..+
T Consensus 172 ~v~~~~el~~al~~a~~~~gP~lIev~~~ 200 (235)
T cd03376 172 SVAYPEDLYKKVKKALSIEGPAYIHILSP 200 (235)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 46778888888887766777888888764
No 401
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=25.92 E-value=2e+02 Score=18.80 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC
Q 033098 23 WETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP 64 (127)
Q Consensus 23 ~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~ 64 (127)
+-+.+..+ .=+|+.|.||-|.-..-.+....|+.+.....
T Consensus 134 rikvi~~a--Gy~PIrimf~~P~r~~~~~iq~~L~tlY~gvg 173 (191)
T PF09499_consen 134 RIKVIKSA--GYKPIRIMFYYPNREQAIRIQTTLKTLYNGVG 173 (191)
T ss_pred HHHHHHHC--CCcceEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 33444443 55899999999998888888888888877653
No 402
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.91 E-value=1.1e+02 Score=19.62 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=40.9
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC---hhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHH
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD---VKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRID 116 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~ 116 (127)
.++.+.++.|.+..=.+.++.- ...+..+|... .+++........+|++.. .+|.++. ....|..+|.
T Consensus 3 L~~~~~sp~~~kv~l~l~e~g~---~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~-~~~~~l~-----ES~AI~~YL~ 73 (211)
T COG0625 3 LYGSPTSPYSRKVRLALEEKGL---PYEIVLVDLDAEQKPPDFLALNPLGKVPALVD-DDGEVLT-----ESGAILEYLA 73 (211)
T ss_pred eecCCCCcchHHHHHHHHHcCC---CceEEEeCcccccCCHHHHhcCCCCCCCEEee-CCCCeee-----cHHHHHHHHH
Confidence 4566667889888776666542 34555555542 344445555778999864 3332221 3455555555
Q ss_pred HHhh
Q 033098 117 SFVQ 120 (127)
Q Consensus 117 ~~~~ 120 (127)
+..+
T Consensus 74 ~~~~ 77 (211)
T COG0625 74 ERYP 77 (211)
T ss_pred hhCC
Confidence 5443
No 403
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=25.78 E-value=1.2e+02 Score=16.92 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=18.1
Q ss_pred hHHHhcCCCccceEEEecCCeEEE
Q 033098 78 DVASKLEVKAMPTFLLMREGAVVD 101 (127)
Q Consensus 78 ~~~~~~~v~~~Pt~~~~~~g~~~~ 101 (127)
..++.+++...++++++.+|..+.
T Consensus 29 K~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 29 KALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHHhCCCCceEEEEecCCCEEc
Confidence 346668887677888889998874
No 404
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=25.53 E-value=1.2e+02 Score=20.79 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=24.4
Q ss_pred HHHHHhhCCCeEEEEEecCChhhHHHhcCCCccce
Q 033098 56 FEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPT 90 (127)
Q Consensus 56 l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt 90 (127)
+.++.++. +..++.||+|.+..+...+|+..-|.
T Consensus 21 l~~l~~~~-~~~VLvVDaDpd~nL~~~LGve~~~~ 54 (255)
T COG3640 21 LKRLLSKG-GYNVLVVDADPDSNLPEALGVEEPMK 54 (255)
T ss_pred HHHHHhcC-CceEEEEeCCCCCChHHhcCCCCCCc
Confidence 34444442 48888999999988888888766443
No 405
>COG5575 ORC2 Origin recognition complex, subunit 2 [DNA replication, recombination, and repair]
Probab=25.46 E-value=1.8e+02 Score=21.68 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=39.1
Q ss_pred hhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhcCCCcc---ceEEEecCCeEEEEEecCCHHHHHHHHHHHhhh
Q 033098 48 PSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKLEVKAM---PTFLLMREGAVVDKLVGANPEEIRKRIDSFVQS 121 (127)
Q Consensus 48 ~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~---Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~~ 121 (127)
.|+.+...|-++++.+ ++.||.+..- ..+.+.|-...+ |.+++ +|- ....+..++.+-|.+++..
T Consensus 242 q~k~F~q~~feL~~~F-nLLFYG~GSK--~~fL~~f~~~~LP~~P~~~l--nGY----~p~~~~r~Vl~ei~e~l~~ 309 (535)
T COG5575 242 QCKNFHQELFELARSF-NLLFYGYGSK--TAFLRKFFPSALPCFPIFYL--NGY----CPIMSRREVLAEIMEALRH 309 (535)
T ss_pred eccccHHHHHHHhhhc-eEEEEecCch--HHHHHHHhHHhcCCcceeee--ccc----CccccHHHHHHHHHHHhcc
Confidence 5888888899998887 7888877543 345566655544 44444 441 1122555555555555443
No 406
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=25.42 E-value=1.1e+02 Score=21.03 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=23.3
Q ss_pred hhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHH
Q 033098 76 VKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDS 117 (127)
Q Consensus 76 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~ 117 (127)
.++..+++++.-+|..+.+.+ +........+.+++.+.+++
T Consensus 13 ~~~~~~~~~i~vvPl~i~~~~-~~y~D~~~i~~~efy~~l~~ 53 (280)
T PF02645_consen 13 PPELAEEYGIYVVPLNIIIDG-KEYRDGVDISPEEFYEKLRE 53 (280)
T ss_dssp -HHHHHHTTEEEE--EEEETT-EEEETTTTSCHHHHHHHHHH
T ss_pred CHHHHHhCCeEEEeEEEecCC-eEEecCCCCCHHHHHHHHHh
Confidence 357778889998998777654 33322223366776666644
No 407
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=25.06 E-value=34 Score=21.06 Aligned_cols=24 Identities=17% Similarity=-0.060 Sum_probs=12.7
Q ss_pred CCCcEEEEEeCC------CChhhhhccHHH
Q 033098 33 QGCPVVVHFTAI------WCMPSVAMNPLF 56 (127)
Q Consensus 33 ~~~~v~v~f~~~------~c~~C~~~~~~l 56 (127)
.++...|..++. =|+.||++..+|
T Consensus 69 ~~~~~~v~v~~~~~~~~sPCG~CRQ~i~Ef 98 (134)
T COG0295 69 KRKFDAVVVVADTGKPVSPCGACRQVLAEF 98 (134)
T ss_pred CCcEEEEEEEcCCCCCcCCcHHHHHHHHHh
Confidence 444445555432 377777765443
No 408
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=24.77 E-value=42 Score=20.93 Aligned_cols=29 Identities=3% Similarity=0.320 Sum_probs=18.5
Q ss_pred ChhhHHHhc-CCCccceEEEecCCeEEEEE
Q 033098 75 DVKDVASKL-EVKAMPTFLLMREGAVVDKL 103 (127)
Q Consensus 75 ~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~ 103 (127)
.-.++.+.| .+.++|..++..+|+++...
T Consensus 9 ~lq~i~~~fs~~tgl~~~i~d~~G~~l~~~ 38 (173)
T PF10114_consen 9 ELQEIQDSFSKATGLSIVIVDPDGNPLTQP 38 (173)
T ss_pred HHHHHHHHHHHHHCCcEEEEeCCCCEEeeC
Confidence 334444544 46778888887888877443
No 409
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=24.77 E-value=1.7e+02 Score=18.52 Aligned_cols=9 Identities=33% Similarity=0.349 Sum_probs=3.7
Q ss_pred CeEEEEEec
Q 033098 65 DVLFLSVDV 73 (127)
Q Consensus 65 ~v~~~~vd~ 73 (127)
+..++.|.+
T Consensus 165 ~p~liev~~ 173 (186)
T cd02015 165 GPVLLDVLV 173 (186)
T ss_pred CCEEEEEEe
Confidence 344444443
No 410
>PRK06163 hypothetical protein; Provisional
Probab=24.75 E-value=2e+02 Score=18.88 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=3.6
Q ss_pred CeEEEEEec
Q 033098 65 DVLFLSVDV 73 (127)
Q Consensus 65 ~v~~~~vd~ 73 (127)
+..++.|.+
T Consensus 164 ~p~lIeV~i 172 (202)
T PRK06163 164 GPSFIAVRI 172 (202)
T ss_pred CCEEEEEEe
Confidence 344444433
No 411
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=24.51 E-value=19 Score=24.74 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=7.0
Q ss_pred CCChhhhhccH
Q 033098 44 IWCMPSVAMNP 54 (127)
Q Consensus 44 ~~c~~C~~~~~ 54 (127)
-|||.|+...|
T Consensus 256 y~Cp~CQ~~~~ 266 (269)
T PRK14811 256 HFCPQCQPLRP 266 (269)
T ss_pred EECCCCcCCCC
Confidence 46777776544
No 412
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=24.38 E-value=1.2e+02 Score=15.66 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=29.8
Q ss_pred EEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecC----ChhhHHHhcCCCccceEEE
Q 033098 40 HFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVD----DVKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~Pt~~~ 93 (127)
.++.+.++.|++..-.++...-.+ .+..++.. ..+++.+......+|.+..
T Consensus 3 l~~~~~s~~~~~v~~~L~~~~l~~---~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~ 57 (73)
T cd03047 3 IWGRRSSINVQKVLWLLDELGLPY---ERIDAGGQFGGLDTPEFLAMNPNGRVPVLED 57 (73)
T ss_pred EEecCCCcchHHHHHHHHHcCCCC---EEEEeccccccccCHHHHhhCCCCCCCEEEE
Confidence 456777888888877777754333 33334322 1234444445667899854
No 413
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.19 E-value=2e+02 Score=21.85 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=14.8
Q ss_pred HHHHHhhCCCeEEEEEecCC
Q 033098 56 FEELASAYPDVLFLSVDVDD 75 (127)
Q Consensus 56 l~~~~~~~~~v~~~~vd~~~ 75 (127)
.+.+.+.+++..+..+|.|.
T Consensus 275 ~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 275 EEELAKLFPGARIARIDSDT 294 (505)
T ss_pred HHHHHhhCCCCcEEEEeccc
Confidence 35566667888888988775
No 414
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=24.16 E-value=1.8e+02 Score=19.09 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=33.4
Q ss_pred CCCcEEEEEeCC--CChhhhhccHHHHHHHhhC--CCeEEEEEecCC
Q 033098 33 QGCPVVVHFTAI--WCMPSVAMNPLFEELASAY--PDVLFLSVDVDD 75 (127)
Q Consensus 33 ~~~~v~v~f~~~--~c~~C~~~~~~l~~~~~~~--~~v~~~~vd~~~ 75 (127)
-+..+.|+|..| .-|-|......+.+++-++ .+++.+...+|.
T Consensus 30 ~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ 76 (224)
T KOG0854|consen 30 LGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDD 76 (224)
T ss_pred cccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhh
Confidence 456777888865 4688999999998888887 479988887764
No 415
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=24.13 E-value=1.9e+02 Score=18.24 Aligned_cols=30 Identities=13% Similarity=-0.120 Sum_probs=14.5
Q ss_pred EEecChhhHH---HHHHHhhcCCCcEEEEEeCC
Q 033098 15 VKVDSVESWE---TFVSQANNQGCPVVVHFTAI 44 (127)
Q Consensus 15 ~~i~~~~~~~---~~~~~~~~~~~~v~v~f~~~ 44 (127)
..+.+.+++. +.+..+...+++.+|...+|
T Consensus 145 ~~v~~~~~l~~~~~al~~a~~~~gp~lI~v~~~ 177 (178)
T cd02008 145 VVVVDPYDLKAIREELKEALAVPGVSVIIAKRP 177 (178)
T ss_pred EEecCccCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3444555555 33444433455665555443
No 416
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=24.11 E-value=2.3e+02 Score=19.09 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=41.8
Q ss_pred CCChhhhhccHHHHHHHhhCCCeEEEEEecCCh-hhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhh
Q 033098 44 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV-KDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQ 120 (127)
Q Consensus 44 ~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~ 120 (127)
..|++|++..-.+....- .+.+..+|.... +.+.+......+|+++. +|..+ .+...|..+|.+..+
T Consensus 17 ~~cp~~~rv~i~L~ekgi---~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l-----~ES~aI~eYL~e~~~ 84 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGV---VFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVK-----TDVNKIEEFLEETLC 84 (236)
T ss_pred CCCHhHHHHHHHHHHcCC---CcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEe-----ecHHHHHHHHHHHcC
Confidence 468999998877766221 356667776654 34444444557999864 45433 256777777776653
No 417
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=1.2e+02 Score=19.28 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCCcEEEEEeCCC--Chhhhh-ccHHHHHHHhhC-----CCeEEEEEe
Q 033098 33 QGCPVVVHFTAIW--CMPSVA-MNPLFEELASAY-----PDVLFLSVD 72 (127)
Q Consensus 33 ~~~~v~v~f~~~~--c~~C~~-~~~~l~~~~~~~-----~~v~~~~vd 72 (127)
++|.++ .|..|. -|.|.. -.|.+.+++.++ +.|..+.||
T Consensus 36 ~gKkVv-lf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 36 KGKKVV-LFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred CCCEEE-EEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 566554 476553 466654 566666666555 346666665
No 418
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=23.91 E-value=1.7e+02 Score=18.47 Aligned_cols=10 Identities=30% Similarity=0.415 Sum_probs=4.5
Q ss_pred CeEEEEEecC
Q 033098 65 DVLFLSVDVD 74 (127)
Q Consensus 65 ~v~~~~vd~~ 74 (127)
+..++.|.++
T Consensus 161 ~p~liev~~~ 170 (177)
T cd02010 161 GVHVIDCPVD 170 (177)
T ss_pred CCEEEEEEec
Confidence 4444444443
No 419
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=23.61 E-value=94 Score=20.61 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=15.8
Q ss_pred cChhhHHHHHHHhhcCCCcEEEEEeC
Q 033098 18 DSVESWETFVSQANNQGCPVVVHFTA 43 (127)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~v~v~f~~ 43 (127)
.+.++|+++.. .++||++.|..
T Consensus 87 lsd~~Fd~lFT----~DkPViFafHG 108 (203)
T PF09363_consen 87 LSDEEFDALFT----KDKPVIFAFHG 108 (203)
T ss_dssp --HHHHHHHH-----SSS-EEEEESS
T ss_pred CCHHHHHHhcC----CCCCEEEEcCC
Confidence 37889999998 78999998875
No 420
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=23.57 E-value=2.9e+02 Score=19.90 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=41.4
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhHHHhc-CCCccceEEEecCCeEEEEEecCCHHHH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDVASKL-EVKAMPTFLLMREGAVVDKLVGANPEEI 111 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~~~~~~~l 111 (127)
+.++.+|+|.+...|--.. .++...+++.-..|+... .+++..+ ..+..|.+.+|++..-.... ..+.+++
T Consensus 152 Rhq~ffVf~Gtge~PL~d~---fidAASe~~~~a~FfSas----eeVaPe~~~~kempaV~VFKDetf~i~d-e~dd~dL 223 (468)
T KOG4277|consen 152 RHQPFFVFFGTGEGPLFDA---FIDAASEKFSVARFFSAS----EEVAPEENDAKEMPAVAVFKDETFEIED-EGDDEDL 223 (468)
T ss_pred ccCceEEEEeCCCCcHHHH---HHHHhhhheeeeeeeccc----cccCCcccchhhccceEEEccceeEEEe-cCchhHH
Confidence 7788999888765543211 122222222222333321 2222222 45678999999887544332 3466788
Q ss_pred HHHHHH
Q 033098 112 RKRIDS 117 (127)
Q Consensus 112 ~~~i~~ 117 (127)
..||++
T Consensus 224 seWinR 229 (468)
T KOG4277|consen 224 SEWINR 229 (468)
T ss_pred HHHHhH
Confidence 888865
No 421
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=23.56 E-value=79 Score=20.38 Aligned_cols=12 Identities=25% Similarity=0.766 Sum_probs=9.9
Q ss_pred ccceEEEecCCe
Q 033098 87 AMPTFLLMREGA 98 (127)
Q Consensus 87 ~~Pt~~~~~~g~ 98 (127)
.+|.++++++|-
T Consensus 156 ~tP~~~f~KdGL 167 (172)
T PTZ00151 156 LAPRFVYIKDGL 167 (172)
T ss_pred cceEEEEEcccc
Confidence 589999999883
No 422
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=23.23 E-value=1.7e+02 Score=18.98 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=4.8
Q ss_pred CCeEEEEEecC
Q 033098 64 PDVLFLSVDVD 74 (127)
Q Consensus 64 ~~v~~~~vd~~ 74 (127)
++..++.|.++
T Consensus 174 ~gp~lIeV~v~ 184 (205)
T cd02003 174 DRTTVIVIKTD 184 (205)
T ss_pred CCCEEEEEEee
Confidence 34444444443
No 423
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=23.17 E-value=34 Score=15.93 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=4.1
Q ss_pred CCChhhhhcc
Q 033098 44 IWCMPSVAMN 53 (127)
Q Consensus 44 ~~c~~C~~~~ 53 (127)
-||.+|....
T Consensus 4 yyCdyC~~~~ 13 (38)
T PF06220_consen 4 YYCDYCKKYL 13 (38)
T ss_dssp -B-TTT--B-
T ss_pred eeccccccee
Confidence 3788888776
No 424
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=23.13 E-value=1.6e+02 Score=18.55 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=8.0
Q ss_pred ChhhHHHHHHHhhcCCCcEEE
Q 033098 19 SVESWETFVSQANNQGCPVVV 39 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v 39 (127)
+.+++.+.+..+...+++.+|
T Consensus 150 ~~~el~~al~~a~~~~~p~lI 170 (175)
T cd02009 150 SLDELEQALESALAQDGPHVI 170 (175)
T ss_pred CHHHHHHHHHHHHhCCCCEEE
Confidence 344444443333333333333
No 425
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=22.89 E-value=98 Score=17.56 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCChhhhh---ccHHHHHHHhhCCCeEEEEEecCChhhHHHhcC-CCccceEEEecC
Q 033098 44 IWCMPSVA---MNPLFEELASAYPDVLFLSVDVDDVKDVASKLE-VKAMPTFLLMRE 96 (127)
Q Consensus 44 ~~c~~C~~---~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~Pt~~~~~~ 96 (127)
-.|.+... ....+.+++.+. +. ++. ++.+.++.+++- +.++|.+++-++
T Consensus 42 ~~c~h~~~~~~addci~~~~~~~-~~-~~V--aT~D~~Lr~~lr~~~GvPvi~l~~~ 94 (101)
T PF04900_consen 42 RKCNHKETPGSADDCILDLAGKN-NK-YIV--ATQDKELRRRLRKIPGVPVIYLRRN 94 (101)
T ss_pred hcCCCCCCCcCHHHHHHHHhccC-Ce-EEE--EecCHHHHHHHhcCCCCCEEEEECC
Confidence 34555433 344566666554 32 222 234467778777 899999877633
No 426
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=22.87 E-value=74 Score=15.47 Aligned_cols=26 Identities=4% Similarity=0.146 Sum_probs=19.2
Q ss_pred cCCeEEEEEecCCHHHHHHHHHHHhh
Q 033098 95 REGAVVDKLVGANPEEIRKRIDSFVQ 120 (127)
Q Consensus 95 ~~g~~~~~~~~~~~~~l~~~i~~~~~ 120 (127)
++|+.+.-...+...+|..||+.+..
T Consensus 12 ~tG~~l~g~~aP~~~~l~~WL~~~p~ 37 (45)
T smart00592 12 ETGKKLTGDDAPKAKDLERWLEENPE 37 (45)
T ss_pred CCccEeccccCCcHHHHHHHHhcCCC
Confidence 67777765555578999999987644
No 427
>PRK14420 acylphosphatase; Provisional
Probab=22.84 E-value=1.5e+02 Score=16.50 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=25.7
Q ss_pred hHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHhhh
Q 033098 78 DVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFVQS 121 (127)
Q Consensus 78 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~~ 121 (127)
..+.++|+.++-. =..+|.+.....|. .+.+++|++.+...
T Consensus 23 ~~A~~~gl~G~V~--N~~dG~Vei~~qG~-~~~i~~f~~~l~~~ 63 (91)
T PRK14420 23 MEADKRKLTGWVK--NRDDGTVEIEAEGP-EEALQLFLDAIEKG 63 (91)
T ss_pred HHHHHcCCEEEEE--ECCCCcEEEEEEEC-HHHHHHHHHHHHhC
Confidence 5677788877621 22577666666554 56677777776543
No 428
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=22.80 E-value=1.3e+02 Score=19.62 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=4.8
Q ss_pred CCCcEEEEEeCCCC
Q 033098 33 QGCPVVVHFTAIWC 46 (127)
Q Consensus 33 ~~~~v~v~f~~~~c 46 (127)
.++|+++.|.+-|-
T Consensus 131 ~~~P~LllFGTGwG 144 (185)
T PF09936_consen 131 EDRPVLLLFGTGWG 144 (185)
T ss_dssp --S-EEEEE--TT-
T ss_pred cCCeEEEEecCCCC
Confidence 45566666665553
No 429
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.75 E-value=2.4e+02 Score=18.69 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=28.3
Q ss_pred CCCcEEEEEeCCCChhhhhccH---HHHHHHhhCCCeEEEEEecCCh
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNP---LFEELASAYPDVLFLSVDVDDV 76 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~---~l~~~~~~~~~v~~~~vd~~~~ 76 (127)
.+--+.++||.|.-.+-..-.- .-.++++++ +|.|+.-|..+.
T Consensus 26 ~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~-~i~~iegdY~~~ 71 (204)
T COG1636 26 SGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKF-GINFIEGDYEDL 71 (204)
T ss_pred cCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHc-CCeeeecCcccH
Confidence 4567789999998755433332 235566666 799988887443
No 430
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.74 E-value=2e+02 Score=19.12 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=34.0
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCC----hhhHHHhcCCCccceEEE
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDD----VKDVASKLEVKAMPTFLL 93 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 93 (127)
+..++.+..+.|++..-.+..+.-. +.+..+|... .++..+.+....+|++.-
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~---~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d 59 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLE---VELKPVDLVKGEQKSPEFLKLNPLGKVPALED 59 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCc---eeEEEeeccccccCCHHHHhcCcCCCCCeEec
Confidence 4467778888888888777665433 3333444433 355666777788998743
No 431
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=22.66 E-value=2.1e+02 Score=22.66 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=61.1
Q ss_pred ChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhc-----cH-----HHHHHHhhCCCeEEEEEecCChhhHHHhcCCCcc
Q 033098 19 SVESWETFVSQANNQGCPVVVHFTAIWCMPSVAM-----NP-----LFEELASAYPDVLFLSVDVDDVKDVASKLEVKAM 88 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~-----~~-----~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~ 88 (127)
+++-+++.+..+. .+..-+|.-|-+|..++-.. .. .+-+++.+..=...+++. |-++..++.-++
T Consensus 47 ~pe~W~~~i~k~k-~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiG----PyIcaEw~~GG~ 121 (649)
T KOG0496|consen 47 TPEMWPDLIKKAK-AGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIG----PYICAEWNFGGL 121 (649)
T ss_pred ChhhhHHHHHHHH-hcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecCC----CeEEecccCCCc
Confidence 5666777777765 55667788888887665322 11 123333333224555553 788899999999
Q ss_pred ceEEEecCCeEEEEEecCCHHHHHHHHHHHhhhhc
Q 033098 89 PTFLLMREGAVVDKLVGANPEEIRKRIDSFVQSIR 123 (127)
Q Consensus 89 Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~~~~ 123 (127)
|..+-+..|...+.....=..++++|.+++++...
T Consensus 122 P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk 156 (649)
T KOG0496|consen 122 PWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK 156 (649)
T ss_pred chhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH
Confidence 95555555655544333345778888888776443
No 432
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=22.55 E-value=3.7e+02 Score=20.77 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=39.1
Q ss_pred CCceEEecChhhHHHHHHHhhcCCCcEEEEEe-CCCChh-----hhhccHHHHHHHhhCCCeEEEEEecCChhhH-----
Q 033098 11 KSRVVKVDSVESWETFVSQANNQGCPVVVHFT-AIWCMP-----SVAMNPLFEELASAYPDVLFLSVDVDDVKDV----- 79 (127)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~v~f~-~~~c~~-----C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----- 79 (127)
..+.+++ +... .+++... ++++-|++| +..-+. -......|++.+..-+++.+-.+|-...++.
T Consensus 29 ~~k~ytL-S~~T-~~~L~~L---~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~ 103 (552)
T TIGR03521 29 EDKRYTL-SPAS-KEVVKKL---DDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEI 103 (552)
T ss_pred CCCceec-CHHH-HHHHHhC---CCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHH
Confidence 3455666 5444 3344432 355555554 443221 1233444455444436799999998775433
Q ss_pred ---HHhcCCCccc
Q 033098 80 ---ASKLEVKAMP 89 (127)
Q Consensus 80 ---~~~~~v~~~P 89 (127)
+..+|+...+
T Consensus 104 ~~~~~~~gi~~~~ 116 (552)
T TIGR03521 104 LDSLAQYGIKPAN 116 (552)
T ss_pred HHHHHHcCCCcce
Confidence 3347877655
No 433
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=22.40 E-value=2.5e+02 Score=18.81 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=32.6
Q ss_pred EEecChhhHHHHHHHhhcCCCcEEEEEe-----CCCChhhhhccHHH-HHHHhhC-CCeEEEEEecC
Q 033098 15 VKVDSVESWETFVSQANNQGCPVVVHFT-----AIWCMPSVAMNPLF-EELASAY-PDVLFLSVDVD 74 (127)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~v~v~f~-----~~~c~~C~~~~~~l-~~~~~~~-~~v~~~~vd~~ 74 (127)
+.+..++.=-.+......+...++.+|. ..-|+.|..+...+ ..+.--. .++.|+.|.-.
T Consensus 49 Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra 115 (211)
T PF05988_consen 49 YVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA 115 (211)
T ss_pred eEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC
Confidence 3443444333344443224445555554 35699999888887 3333222 35888877643
No 434
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=22.37 E-value=21 Score=16.71 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=8.0
Q ss_pred CHHHHHHHHH
Q 033098 107 NPEEIRKRID 116 (127)
Q Consensus 107 ~~~~l~~~i~ 116 (127)
+.+++.+|++
T Consensus 39 ~~~~l~~~~~ 48 (49)
T TIGR01764 39 PREDVDEYLE 48 (49)
T ss_pred eHHHHHHHHh
Confidence 7788888875
No 435
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=22.26 E-value=2.3e+02 Score=18.26 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=28.9
Q ss_pred cEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh
Q 033098 36 PVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV 76 (127)
Q Consensus 36 ~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~ 76 (127)
.+-+.+.+++|+....+...++......+++.=+.|++.-.
T Consensus 116 ~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~~d 156 (174)
T TIGR03406 116 DIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELVFD 156 (174)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEEec
Confidence 35667778999988888888777666666666666665443
No 436
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=22.25 E-value=3.4e+02 Score=20.32 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=23.7
Q ss_pred EEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEe
Q 033098 38 VVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVD 72 (127)
Q Consensus 38 ~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd 72 (127)
+|-|.+-.=+......|.++++.+.+|++.++.-.
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt 85 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTT 85 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 45566666677777777777777777765555444
No 437
>PRK14451 acylphosphatase; Provisional
Probab=22.25 E-value=1.6e+02 Score=16.48 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=24.9
Q ss_pred hhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHHHh
Q 033098 77 KDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDSFV 119 (127)
Q Consensus 77 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~~~ 119 (127)
...+.++|+.++-.- ..+|.+.....| +++.+++|+..+.
T Consensus 23 ~~~A~~~gl~G~V~N--~~dG~Vei~~qG-~~~~i~~f~~~l~ 62 (89)
T PRK14451 23 KKLAEQLMISGWARN--LADGRVEVFACG-KEDKLEEFYTWLQ 62 (89)
T ss_pred HHHHHHhCCEEEEEE--CCCCCEEEEEEE-CHHHHHHHHHHHh
Confidence 356777888775422 257766666555 5566777776665
No 438
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=22.15 E-value=2.5e+02 Score=18.76 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=43.5
Q ss_pred cEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCCh---hhHHHhcCCCccceEEEecCCeEEEEEecCC
Q 033098 36 PVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDV---KDVASKLEVKAMPTFLLMREGAVVDKLVGAN 107 (127)
Q Consensus 36 ~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~ 107 (127)
+++-.+|--.|++=+.+....+-+.++||++.+...|.... .-+++-..+-.+=.+.+.-.|.....+.|..
T Consensus 70 ptl~i~fCvSCgYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~ 144 (226)
T KOG3286|consen 70 PTLEINFCVSCGYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLG 144 (226)
T ss_pred CcEEEEEEEecCcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCC
Confidence 55555566668887877777777778899998887776643 1233333343333444444555444555663
No 439
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=22.06 E-value=1.5e+02 Score=20.91 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=30.4
Q ss_pred eEEecChhhHHHHHHHhhcCCCcEEEEEeCCCChhhhhccH-HHHHHHhhCCCeEEEE
Q 033098 14 VVKVDSVESWETFVSQANNQGCPVVVHFTAIWCMPSVAMNP-LFEELASAYPDVLFLS 70 (127)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~-~l~~~~~~~~~v~~~~ 70 (127)
+.-+ -+.++.+.+.... ++.+ .+|.-.|+-...+.+ .+.++.++||+..++.
T Consensus 139 IlF~-PD~nLG~~v~~~~--~k~i--i~w~G~C~VH~~f~~~~i~~~r~~~P~a~vlv 191 (296)
T PF02445_consen 139 ILFL-PDKNLGRYVARQT--GKNI--ILWPGYCPVHERFTPEDIEKAREKHPDAKVLV 191 (296)
T ss_dssp EEEE-S-HHHHHHHHHHH----EE--EESSSS--TGGG--HHHHHHHHCCSTTSEEEE
T ss_pred EEEc-CcHHHHHHHHHhh--CCeE--EEECCCcccccccCHHHHHHHHHHCcCCEEEE
Confidence 4444 4455666665542 3333 478888988888887 5788888999877653
No 440
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=21.86 E-value=27 Score=22.75 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=12.4
Q ss_pred CcEEEEEeCCCChhhhh
Q 033098 35 CPVVVHFTAIWCMPSVA 51 (127)
Q Consensus 35 ~~v~v~f~~~~c~~C~~ 51 (127)
+.++=.||..||..|..
T Consensus 6 ~~~~gk~~iyWCe~cNl 22 (202)
T COG5270 6 PVVLGKFPIYWCEKCNL 22 (202)
T ss_pred ceeecccceeehhhCCC
Confidence 44555688899998864
No 441
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.63 E-value=72 Score=21.41 Aligned_cols=40 Identities=5% Similarity=-0.063 Sum_probs=25.8
Q ss_pred CCCcEEEEEeCCCChhhhhccH-HHHHHHhhC--CCeEEEEEe
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNP-LFEELASAY--PDVLFLSVD 72 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~-~l~~~~~~~--~~v~~~~vd 72 (127)
+++.-|-.||-.-||+|+.+.- .|-.+.... +.+.+-.+.
T Consensus 38 ~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvP 80 (220)
T KOG3160|consen 38 APKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVP 80 (220)
T ss_pred CCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEc
Confidence 4467788889999999998865 455554442 224444444
No 442
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.38 E-value=1.4e+02 Score=15.52 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=27.1
Q ss_pred CCChhhhhccHHHHHHHhhCCCeEEEEEecCC---hhhHHHhcCCCccceEEEecCCeEE
Q 033098 44 IWCMPSVAMNPLFEELASAYPDVLFLSVDVDD---VKDVASKLEVKAMPTFLLMREGAVV 100 (127)
Q Consensus 44 ~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~Pt~~~~~~g~~~ 100 (127)
..|+.|++..-.++...-. +....++... .+++.+......+|++.. +|..+
T Consensus 8 ~~s~~s~~v~~~L~~~gl~---~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l 62 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIP---FEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVV 62 (73)
T ss_pred CCCHHHHHHHHHHHHcCCC---CEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEE
Confidence 3456666666555554333 3333444432 234444445667999854 55443
No 443
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=21.30 E-value=29 Score=23.85 Aligned_cols=6 Identities=17% Similarity=0.578 Sum_probs=3.0
Q ss_pred CChhhh
Q 033098 45 WCMPSV 50 (127)
Q Consensus 45 ~c~~C~ 50 (127)
|||.|+
T Consensus 267 ~CP~CQ 272 (274)
T PRK01103 267 FCPRCQ 272 (274)
T ss_pred ECcCCC
Confidence 455554
No 444
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=20.83 E-value=3.6e+02 Score=20.07 Aligned_cols=55 Identities=9% Similarity=0.227 Sum_probs=37.0
Q ss_pred CeEEEEEecCChhh-------------HHHhcC-CCccceEEEecCC---eEEEEEecCCHHHHHHHHHHHh
Q 033098 65 DVLFLSVDVDDVKD-------------VASKLE-VKAMPTFLLMREG---AVVDKLVGANPEEIRKRIDSFV 119 (127)
Q Consensus 65 ~v~~~~vd~~~~~~-------------~~~~~~-v~~~Pt~~~~~~g---~~~~~~~~~~~~~l~~~i~~~~ 119 (127)
+..++.+|-.+.|+ +...|. ....|.+++...+ .++-+..|.++.++.+.+.+++
T Consensus 376 ~~~~~~~d~~~~p~~~~~~e~~t~~w~~~~a~~~~~~~pdvi~d~g~~g~Ep~i~v~g~~~~~v~~~~~~l~ 447 (448)
T PRK08573 376 GYTVAYIDRREEPEEVKAREGASIPWIIEEAYKQTGRRPDIIYDLGDWGKEPMIRILGRTPVEVVEKLLRLI 447 (448)
T ss_pred CCeEEEEcCCCCchhhhhccccchhHHHHHHHHhcCCCCeEEEECCCCCcCcEEEEECCCHHHHHHHHHHHh
Confidence 67788888665442 222232 3688988887443 4667777889999988887764
No 445
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=20.66 E-value=2.6e+02 Score=19.14 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=24.7
Q ss_pred hhhHHHhcCCCccceEEEecCCeEEEEEecCCHHHHHHHHHH
Q 033098 76 VKDVASKLEVKAMPTFLLMREGAVVDKLVGANPEEIRKRIDS 117 (127)
Q Consensus 76 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~l~~~i~~ 117 (127)
.++...++++.-+|.-+.+. |+........+.+++.+.+.+
T Consensus 12 ~~~~~~~~~I~vvPl~I~~~-~~~y~D~~~i~~~~~y~~~~~ 52 (275)
T TIGR00762 12 PPELIEEYGITVVPLTVIID-GKTYRDGVDITPEEFYEKLKE 52 (275)
T ss_pred CHHHHHHcCCEEEEEEEEEC-CEEeecCCCCCHHHHHHHHHh
Confidence 45677888999999876664 433333223355666555543
No 446
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=20.36 E-value=54 Score=15.88 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=11.3
Q ss_pred CChhhhhccHHHHHHHhh
Q 033098 45 WCMPSVAMNPLFEELASA 62 (127)
Q Consensus 45 ~c~~C~~~~~~l~~~~~~ 62 (127)
.|.+|+.-.+.+.++.++
T Consensus 18 kC~PCR~Gt~~l~~~l~~ 35 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEK 35 (46)
T ss_dssp --HHHHCCCCHHHHHHHH
T ss_pred CCCCcHhHHHHHHHHHHH
Confidence 588888777777666554
No 447
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.22 E-value=1e+02 Score=13.58 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=7.9
Q ss_pred cCCHHHHHHHHHH
Q 033098 105 GANPEEIRKRIDS 117 (127)
Q Consensus 105 ~~~~~~l~~~i~~ 117 (127)
|.+.+++.+|++.
T Consensus 16 Gls~eeir~FL~~ 28 (30)
T PF08671_consen 16 GLSKEEIREFLEF 28 (30)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 5577888887764
No 448
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=20.20 E-value=2.2e+02 Score=21.18 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=30.0
Q ss_pred CCCcEEEEEeCCCChhhhhccHHHHHHHhhCCCeEEEEEecCChhhH
Q 033098 33 QGCPVVVHFTAIWCMPSVAMNPLFEELASAYPDVLFLSVDVDDVKDV 79 (127)
Q Consensus 33 ~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~ 79 (127)
.+++| -.||+.....-....++|+.++++.+++.+-.+|..+++.+
T Consensus 342 s~~~V-~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiDSs~~g~l 387 (438)
T COG4097 342 SDPPV-HLFYCSRNWEEALYAEELRALAQKLPNVVLHIIDSSKDGYL 387 (438)
T ss_pred cCCce-EEEEEecCCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc
Confidence 34444 44555444344455667888888888888888888776543
No 449
>PRK11633 cell division protein DedD; Provisional
Probab=20.06 E-value=2.5e+02 Score=18.99 Aligned_cols=46 Identities=15% Similarity=0.401 Sum_probs=33.4
Q ss_pred ChhhHHHhcCCCccceEEEe---cCCeEEEEEecC--CHHHHHHHHHHHhh
Q 033098 75 DVKDVASKLEVKAMPTFLLM---REGAVVDKLVGA--NPEEIRKRIDSFVQ 120 (127)
Q Consensus 75 ~~~~~~~~~~v~~~Pt~~~~---~~g~~~~~~~~~--~~~~l~~~i~~~~~ 120 (127)
+...+..++...|+..++.- .+|...+-+.|. +.+++++.+.++-.
T Consensus 162 ~A~~l~~kL~~~G~~Ay~~~~~~~~G~~tRV~VGP~~sk~~ae~~~~~Lk~ 212 (226)
T PRK11633 162 KVNEIVAKLRLSGYRVYTVPSTPVQGKITRIYVGPDASKDKLKGSLGELKQ 212 (226)
T ss_pred HHHHHHHHHHHCCCeeEEEeeecCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34567778888888887753 567777777787 78888887777644
No 450
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=20.06 E-value=2.4e+02 Score=17.58 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=46.0
Q ss_pred EEeCCCChhhhhccHH----HHHHHhhCCCeEEEEEecCChhhHHHhcCCCccceEEEe-cCCeEEEEE-ecCCHHHHHH
Q 033098 40 HFTAIWCMPSVAMNPL----FEELASAYPDVLFLSVDVDDVKDVASKLEVKAMPTFLLM-REGAVVDKL-VGANPEEIRK 113 (127)
Q Consensus 40 ~f~~~~c~~C~~~~~~----l~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~-~~~~~~~l~~ 113 (127)
+=|-.|-+.++-+... |.+++++.++|.|+.-.-. ...|.+... .||+..... -..+.+++.+
T Consensus 28 ~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v~~rr-----------g~hP~lraeY~NGre~vicvrnms~eevs~ 96 (145)
T KOG3445|consen 28 VSFCNWGGSSRGMREFLESELPDLARENPGVVIYVEPRR-----------GQHPLLRAEYLNGRERVICVRNMSQEEVSK 96 (145)
T ss_pred EEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEEeccC-----------CCCceEEEEecCCceEEEeeccCCHHHHHH
Confidence 3455677777776665 4667777788888764321 235665544 677544333 3458899998
Q ss_pred HHHHHhhhhc
Q 033098 114 RIDSFVQSIR 123 (127)
Q Consensus 114 ~i~~~~~~~~ 123 (127)
++..+....+
T Consensus 97 ~~~lL~ds~G 106 (145)
T KOG3445|consen 97 KATLLRDSSG 106 (145)
T ss_pred HHHHHhccCC
Confidence 8887754443
No 451
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=20.05 E-value=2.4e+02 Score=17.61 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=24.2
Q ss_pred hHHHHHHHhhcCCCcEEEEEeCCCChhhhhccHHHHHHHhhCC------CeEEEEEe
Q 033098 22 SWETFVSQANNQGCPVVVHFTAIWCMPSVAMNPLFEELASAYP------DVLFLSVD 72 (127)
Q Consensus 22 ~~~~~~~~~~~~~~~v~v~f~~~~c~~C~~~~~~l~~~~~~~~------~v~~~~vd 72 (127)
.+.+.+.. .+|-+|-..+ ++..|+.+...+.++..+.. .+.++.+|
T Consensus 54 ~l~~~i~~----~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~ 105 (150)
T PF14639_consen 54 RLKKFIEK----HKPDVIAVGG-NSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVD 105 (150)
T ss_dssp HHHHHHHH----H--SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE--
T ss_pred HHHHHHHH----cCCeEEEEcC-CChhHHHHHHHHHHHHHHhhhcccCCCceEEEEC
Confidence 33445553 3455555544 78889988888888776552 35655655
Done!