BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033102
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8YM73|Y5067_NOSS1 Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=alr5067 PE=3 SV=1
Length = 115
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC 127
LG M+ L E KKAQ V Q A R+Q+EL E G G L+KV
Sbjct: 12 LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEIQGEAGGGLVKVI 56
>sp|Q3MAP6|Y2322_ANAVT Nucleoid-associated protein Ava_2322 OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=Ava_2322 PE=3 SV=1
Length = 115
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC 127
LG M+ L E KKAQ V Q A R+Q+EL E G G L+KV
Sbjct: 12 LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEILGEAGGGLVKVI 56
>sp|Q8GMT0|Y464_SYNE7 Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus
elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2
Length = 113
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKV 126
LG M+ L + KKAQ VQ A +VQ++L E +G +G L+KV
Sbjct: 10 LGKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKV 53
>sp|Q5N376|Y1054_SYNP6 Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1054_d PE=3
SV=1
Length = 113
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKV 126
LG M+ L + KKAQ VQ A +VQ++L E +G +G L+KV
Sbjct: 10 LGKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKV 53
>sp|B2J719|Y448_NOSP7 Nucleoid-associated protein Npun_F0448 OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=Npun_F0448 PE=3 SV=1
Length = 115
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC 127
LG M+ L + KKAQ V Q A R+Q+EL E G G L+KV
Sbjct: 12 LGKMKELADAFKKAQQV-QEGAKRLQEELEQMEILGESGGGLVKVI 56
>sp|E9NW26|VM2P1_PROMU Zinc metalloproteinase/disintegrin PMMP-1 OS=Protobothrops
mucrosquamatus PE=2 SV=1
Length = 479
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 65 KKDNNEKGDDAPSKAGILGNMQNLYETVKKA-QMVVQVEAVR 105
K +N EK D+AP G+ YE +KKA ++VV E +R
Sbjct: 153 KYENVEKEDEAPKMCGVTETNWESYEPIKKASKLVVTAEPLR 194
>sp|Q2QA02|VM3_CRODD Zinc metalloproteinase-disintegrin OS=Crotalus durissus durissus
PE=2 SV=1
Length = 609
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 65 KKDNNEKGDDAPSKAGILGNMQNLYETVKKA-QMVVQVE 102
K +N EK D+AP G+ N ++ YE +KKA Q+VV E
Sbjct: 153 KYENVEKEDEAPKMCGVTQNWKS-YEPIKKASQLVVTAE 190
>sp|A4PBQ9|VM3VA_CROAT Zinc metalloproteinase-disintegrin VAP2A OS=Crotalus atrox PE=1
SV=1
Length = 607
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 65 KKDNNEKGDDAPSKAGILGNMQNLYETVKKA-QMVVQVE 102
K +N EK D+AP G+ N ++ YE +KKA Q+VV E
Sbjct: 153 KYENVEKEDEAPKMCGVTQNWKS-YEPIKKASQLVVTAE 190
>sp|O93523|VM3BP_BOTJA Zinc metalloproteinase-disintegrin bothropasin OS=Bothrops jararaca
PE=1 SV=2
Length = 610
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 65 KKDNNEKGDDAPSKAGILGNMQNLYETVKKA-QMVVQVE 102
K +N EK D+AP G+ N ++ YE +KKA Q+VV E
Sbjct: 153 KYENVEKEDEAPKMCGVTQNWKS-YEPIKKASQLVVTAE 190
>sp|Q8QG88|VM36A_BOTIN Zinc metalloproteinase-disintegrin BITM06A OS=Bothrops insularis
PE=2 SV=1
Length = 610
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 65 KKDNNEKGDDAPSKAGILGNMQNLYETVKKA-QMVVQVE 102
K +N EK D+AP G+ N ++ YE +KKA Q+VV E
Sbjct: 153 KYENVEKEDEAPKMCGVTQNWKS-YEPIKKASQLVVTAE 190
>sp|Q64632|ITB4_RAT Integrin beta-4 OS=Rattus norvegicus GN=Itgb4 PE=2 SV=1
Length = 1807
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 79 AGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIK 125
AG+ GNM N KKAQ+ E +RV K A YC EL K
Sbjct: 20 AGLPGNMAN---RCKKAQVKSCTECIRVDKSCA------YCTDELFK 57
>sp|Q0SWS7|Y056_CLOPS Nucleoid-associated protein CPR_0056 OS=Clostridium perfringens
(strain SM101 / Type A) GN=CPR_0056 PE=3 SV=1
Length = 112
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 77 SKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEG 121
++ G G M N+ +K+AQM+ Q + +Q+E+ A+EF+G G
Sbjct: 2 ARGGFPGGMGNMNNLMKQAQML-QKQMQSMQEEIEASEFEGSAGG 45
>sp|Q0TV21|Y053_CLOP1 Nucleoid-associated protein CPF_0053 OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=CPF_0053
PE=3 SV=1
Length = 112
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 77 SKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEG 121
++ G G M N+ +K+AQM+ Q + +Q+E+ A+EF+G G
Sbjct: 2 ARGGFPGGMGNMNNLMKQAQML-QKQMQSMQEEIEASEFEGSAGG 45
>sp|Q8XPB9|Y046_CLOPE Nucleoid-associated protein CPE0046 OS=Clostridium perfringens
(strain 13 / Type A) GN=CPE0046 PE=3 SV=1
Length = 112
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 77 SKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEG 121
++ G G M N+ +K+AQM+ Q + +Q+E+ A+EF+G G
Sbjct: 2 ARGGFPGGMGNMNNLMKQAQML-QKQMQSMQEEIEASEFEGSAGG 45
>sp|A9B9L9|Y020_PROM4 Nucleoid-associated protein P9211_00201 OS=Prochlorococcus marinus
(strain MIT 9211) GN=P9211_00201 PE=3 SV=1
Length = 115
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC 127
L N L E KKAQ + Q +A ++Q+EL A E +G + + +C
Sbjct: 6 LPNFGQLTEAFKKAQQIQQ-DAQKLQEELDAMELEGKNQDGRVSIC 50
>sp|Q9XAI3|Y3619_STRCO Nucleoid-associated protein SCO3619 OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=SCO3619 PE=3
SV=1
Length = 115
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC 127
NMQ L + +K +Q + + Q+ELA E DG G L+K
Sbjct: 9 NMQQLLQQAQK----MQQDLAKAQEELARTEVDGQAGGGLVKAT 48
>sp|Q9PVK9|VM2MD_GLOBR Zinc metalloproteinase/disintegrin OS=Gloydius brevicaudus PE=2
SV=1
Length = 482
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 65 KKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVR 105
K +N EK D+AP G+ E +K +Q+VV E R
Sbjct: 153 KYENVEKEDEAPKMCGVTQTNWKSDEPIKASQLVVTAEQQR 193
>sp|Q2SIX0|Y2614_HAHCH Nucleoid-associated protein HCH_02614 OS=Hahella chejuensis (strain
KCTC 2396) GN=HCH_02614 PE=3 SV=1
Length = 108
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC 127
I GNM +L + +K Q +Q + Q+ELA AE G G LIK+
Sbjct: 2 IKGNMGDLMKQAQKIQEQMQ----KAQEELANAEVSGESGGGLIKIV 44
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,953,678
Number of Sequences: 539616
Number of extensions: 1588199
Number of successful extensions: 4338
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4289
Number of HSP's gapped (non-prelim): 71
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)