Query 033102
Match_columns 127
No_of_seqs 93 out of 95
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 16:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ybx_A Conserved hypothetical 99.4 1.8E-13 6.2E-18 103.4 4.8 45 82-127 36-81 (143)
2 1j8b_A YBAB; hypothetical prot 99.2 3E-12 1E-16 92.1 2.7 40 87-127 9-48 (112)
3 3f42_A Protein HP0035; helicob 99.1 4.3E-11 1.5E-15 85.0 3.9 38 83-127 6-43 (99)
4 1ybx_A Conserved hypothetical 90.7 0.22 7.7E-06 37.3 3.7 29 81-110 39-67 (143)
5 1j8b_A YBAB; hypothetical prot 73.6 1.9 6.5E-05 30.5 2.3 27 83-110 8-34 (112)
6 2wg5_A General control protein 45.5 19 0.00064 24.9 3.3 37 84-124 8-44 (109)
7 2akf_A Coronin-1A; coiled coil 43.3 21 0.00073 21.1 2.8 24 87-114 3-26 (32)
8 3m1i_B RAN-specific GTPase-act 38.4 6.6 0.00023 30.5 0.0 21 54-74 11-31 (191)
9 3azd_A Short alpha-tropomyosin 36.0 13 0.00044 21.9 1.0 19 93-112 11-29 (37)
10 1wt6_A Myotonin-protein kinase 31.9 50 0.0017 22.9 3.6 33 86-119 45-77 (81)
11 3m91_A Proteasome-associated A 31.6 56 0.0019 20.5 3.5 24 86-113 26-49 (51)
12 1x79_B RAB GTPase binding effe 31.2 67 0.0023 23.1 4.3 29 85-113 61-89 (112)
13 2f23_A Anti-cleavage anti-GREA 22.5 79 0.0027 22.6 3.4 31 89-119 48-78 (156)
14 2rm8_A Sensory rhodopsin II tr 20.5 60 0.0021 19.4 2.1 13 100-112 43-55 (68)
No 1
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=99.40 E-value=1.8e-13 Score=103.37 Aligned_cols=45 Identities=29% Similarity=0.382 Sum_probs=37.0
Q ss_pred cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102 82 LGNM-QNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC 127 (127)
Q Consensus 82 lgNM-qnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt 127 (127)
|+|| +||.+++|+||++ |++|+++|+||++++|+|+|+||+|+||
T Consensus 36 ~~~m~gnm~~mmkQAQkm-Q~km~k~QeeL~~~eveg~sGgGlVkVt 81 (143)
T 1ybx_A 36 FPGFGGNINNLVKQAQKM-QRDMERVQEELKEKTVEASAGGGAVTVV 81 (143)
T ss_dssp -------CHHHHHHHHHH-HHHHHHHHHHHHHCEEEEEETTTTEEEE
T ss_pred CcccchhHHHHHHHHHHH-HHHHHHHHHHHhcCEEEEEECCCEEEEE
Confidence 4443 6888889999996 9999999999999999999999999996
No 2
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=99.22 E-value=3e-12 Score=92.10 Aligned_cols=40 Identities=30% Similarity=0.378 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102 87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC 127 (127)
Q Consensus 87 nL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt 127 (127)
||.+++|+||++ |++|+++|+||++++|+|+|+||+|+||
T Consensus 9 nm~~mmkqaq~m-Q~~m~~~QeeL~~~~v~g~sggG~V~Vt 48 (112)
T 1j8b_A 9 GLGGLMKQAQQM-QEKMQKMQEEIAQLEVTGESGAGLVKIT 48 (112)
T ss_dssp -CCCHHHHHHHH-HHHHHHHHHHHTTSEEEEEEGGGTEEEE
T ss_pred CHHHHHHHHHHH-HHHHHHHHHHHhccEEEEEECCCEEEEE
Confidence 444456777775 8889999999999999999999999996
No 3
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=99.10 E-value=4.3e-11 Score=85.04 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceEEEC
Q 033102 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVC 127 (127)
Q Consensus 83 gNMqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlVkVt 127 (127)
|||++|+ |++ |++|+++|+||++++|+|+|+||+|+||
T Consensus 6 gnm~~lm------q~m-Q~~m~~~QeeL~~~~v~g~sggG~V~Vt 43 (99)
T 3f42_A 6 SQLGGLL------DGM-KKEFSQLEEKNKDTIHTSKSGGGMVSVS 43 (99)
T ss_dssp HHHHHHH------HHH-HHHHHHHHHHHHTCEEEEEEGGGTEEEE
T ss_pred hhHHHHH------HHH-HHHHHHHHHHHhcCEEEEEECCCEEEEE
Confidence 4777777 664 7789999999999999999999999996
No 4
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=90.68 E-value=0.22 Score=37.31 Aligned_cols=29 Identities=28% Similarity=0.209 Sum_probs=18.9
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033102 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKEL 110 (127)
Q Consensus 81 mlgNMqnL~e~~KKAQq~VQ~~m~klQeEL 110 (127)
|++||++|++++|++|+. -+++++--++.
T Consensus 39 m~gnm~~mmkQAQkmQ~k-m~k~QeeL~~~ 67 (143)
T 1ybx_A 39 FGGNINNLVKQAQKMQRD-MERVQEELKEK 67 (143)
T ss_dssp ----CHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred cchhHHHHHHHHHHHHHH-HHHHHHHHhcC
Confidence 357999999999999998 44455544444
No 5
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=73.63 E-value=1.9 Score=30.49 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=17.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033102 83 GNMQNLYETVKKAQMVVQVEAVRVQKEL 110 (127)
Q Consensus 83 gNMqnL~e~~KKAQq~VQ~~m~klQeEL 110 (127)
|||++|+++++++|+. -+++++--++.
T Consensus 8 gnm~~mmkqaq~mQ~~-m~~~QeeL~~~ 34 (112)
T 1j8b_A 8 GGLGGLMKQAQQMQEK-MQKMQEEIAQL 34 (112)
T ss_dssp --CCCHHHHHHHHHHH-HHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence 4899999999999988 44444443433
No 6
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=45.53 E-value=19 Score=24.93 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeeeCCceE
Q 033102 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELI 124 (127)
Q Consensus 84 NMqnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~aggGlV 124 (127)
-|++|.++.+.+++. ..++++||+...-.+..-|..+
T Consensus 8 ~~~~l~~~~~~l~~~----i~~lkeel~~L~~~P~~Vg~v~ 44 (109)
T 2wg5_A 8 RMKQLEDKVEELLSK----NYHLENEVARLRSPPLLVGVVS 44 (109)
T ss_dssp -CHHHHHHHHHHHHH----HHHHHHHHHHHHSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHhCCCceEEEEE
Confidence 477888888877776 8899999988765544444333
No 7
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=43.28 E-value=21 Score=21.06 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcE
Q 033102 87 NLYETVKKAQMVVQVEAVRVQKELAAAE 114 (127)
Q Consensus 87 nL~e~~KKAQq~VQ~~m~klQeELa~~E 114 (127)
.|-|-+++.|.+ .+++|+.|+..|
T Consensus 3 rlee~~r~l~~i----vq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAI----VQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 356778888887 556777665543
No 8
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=38.43 E-value=6.6 Score=30.45 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=0.0
Q ss_pred ceeEEEeeeccccCCCCCCCC
Q 033102 54 RSLRVYGLFGGKKDNNEKGDD 74 (127)
Q Consensus 54 ~~~~~~~lfgg~k~~~e~~~~ 74 (127)
.+-.|++.|||+|+..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ 31 (191)
T 3m1i_B 11 PSSAVFSMFGGKKAEKPETKK 31 (191)
T ss_dssp ---------------------
T ss_pred CchhhhhhhcCCccccccccc
Confidence 445689999998876544443
No 9
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=36.05 E-value=13 Score=21.90 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033102 93 KKAQMVVQVEAVRVQKELAA 112 (127)
Q Consensus 93 KKAQq~VQ~~m~klQeELa~ 112 (127)
+|+|.+ |.++..+|++++.
T Consensus 11 kKiq~l-q~q~d~aee~~~~ 29 (37)
T 3azd_A 11 RKIRSL-QEQNYHLENEVAR 29 (37)
T ss_dssp HHHHHH-HHHTTTTHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHH
Confidence 456664 6666666666553
No 10
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.85 E-value=50 Score=22.88 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcEeeeee
Q 033102 86 QNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYC 119 (127)
Q Consensus 86 qnL~e~~KKAQq~VQ~~m~klQeELa~~EfEG~a 119 (127)
..|.++-++-+.. +.++++++++|+.+.-+|.+
T Consensus 45 skL~eae~rn~eL-~~e~~~l~~~~eelq~~~~~ 77 (81)
T 1wt6_A 45 SQLREAEARNRDL-EAHVRQLQERMELLQAEGAT 77 (81)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHccchh
Confidence 3566777777774 88889999998887766654
No 11
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.61 E-value=56 Score=20.52 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033102 86 QNLYETVKKAQMVVQVEAVRVQKELAAA 113 (127)
Q Consensus 86 qnL~e~~KKAQq~VQ~~m~klQeELa~~ 113 (127)
..|.++++.|.+. +.++.+||+.+
T Consensus 26 ~rL~~~L~~AR~e----l~~Lkeele~L 49 (51)
T 3m91_A 26 SKLMETLKEARQQ----LLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 4567888888776 89999998864
No 12
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=31.22 E-value=67 Score=23.14 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033102 85 MQNLYETVKKAQMVVQVEAVRVQKELAAA 113 (127)
Q Consensus 85 MqnL~e~~KKAQq~VQ~~m~klQeELa~~ 113 (127)
+..|..+|.++|.-||.+|.++..+.+.+
T Consensus 61 L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V 89 (112)
T 1x79_B 61 LEELQQGLSQAKRDVQEQMAVLMQSREQV 89 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999998887764
No 13
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=22.54 E-value=79 Score=22.62 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcEeeeee
Q 033102 89 YETVKKAQMVVQVEAVRVQKELAAAEFDGYC 119 (127)
Q Consensus 89 ~e~~KKAQq~VQ~~m~klQeELa~~EfEG~a 119 (127)
+++.|..|..+...+..++++|+..++.-.+
T Consensus 48 y~aak~~q~~~e~ri~~L~~~L~~a~vi~~~ 78 (156)
T 2f23_A 48 LEAAKQEKARIEARIDSLEDILSRAVILEEG 78 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 5788899988899999999999999985443
No 14
>2rm8_A Sensory rhodopsin II transducer; protein, chemotaxis, chromophore, membrane, methylation, photoreceptor protein, receptor; NMR {Natronomonas pharaonis}
Probab=20.50 E-value=60 Score=19.36 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhh
Q 033102 100 QVEAVRVQKELAA 112 (127)
Q Consensus 100 Q~~m~klQeELa~ 112 (127)
+.++++.+.+++.
T Consensus 43 ~~~~e~~~~~~e~ 55 (68)
T 2rm8_A 43 REDAEQAQKRAEE 55 (68)
T ss_dssp HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHH
Confidence 3346666666654
Done!