BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033105
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 5 NKGLLEEIVDPLIKVQISPNSLRKFAEIAEKCLREDGDDRPTMRDVLWDLEYALQLQQTA 64
N G LE+IVDP + +I P SLRKF + A KCL +DRP+M DVLW LEYAL+LQ++
Sbjct: 261 NNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQESV 320
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 5 NKGLLEEIVDPLIKVQISPNSLRKFAEIAEKCLREDGDDRPTMRDVLWDLEYALQLQQTA 64
N G LE+IVDP + +I P SLRKF + A KCL +DRP+M DVLW LEYAL+LQ++
Sbjct: 261 NNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQESV 320
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 21 ISPNSLRKFA-----EIAEKCLREDGDDRPTMRDVL 51
+ P S K A EI E C+R++ D+R +++D+L
Sbjct: 246 VKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 281
>pdb|3KE3|A Chain A, Crystal Structure Of Putative Serine-Pyruvate
Aminotransferase (Yp_263484.1) From Psychrobacter
Arcticum 273-4 At 2.20 A Resolution
Length = 379
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 56 YALQLQQTARTREPHEDSTTDASSALPFPNVRRFPSYSVSMNEVDMQILRDQDNSISSES 115
++L L+Q +E+ + P ++R+F + E+ ILRD + +
Sbjct: 228 FSLDLKQWLTIXRAYENGGHAYHATXPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRV 287
Query: 116 -KVFSQLGIE 124
KV + GIE
Sbjct: 288 RKVLTDKGIE 297
>pdb|3PTK|A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
pdb|3PTK|B Chain B, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
pdb|3PTM|A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
With 2- Fluoroglucopyranoside
pdb|3PTM|B Chain B, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
With 2- Fluoroglucopyranoside
pdb|3PTQ|A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
With Dinitrophenyl
2-Deoxy-2-Fluoro-Beta-D-Glucopyranoside
pdb|3PTQ|B Chain B, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
With Dinitrophenyl
2-Deoxy-2-Fluoro-Beta-D-Glucopyranoside
Length = 505
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 21 ISPNSLRKFAEIAEKCLREDGD 42
+SPN + F + AE C +E GD
Sbjct: 167 LSPNIINDFKDYAEICFKEFGD 188
>pdb|2J6J|A Chain A, Prefusion Form Of The Vesicular Stomatitis Virus
Glycoprotein G Ectodomain
Length = 422
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 69 PHEDSTTDASSALPFPNVRRFPSYSVSMNEVDMQILRDQDNSISSESKVFSQLGIEDA 126
P+ED + L + +FP Y + + D D +SS+++VF I+DA
Sbjct: 362 PYEDVEIGPNGVLRTSSGYKFPLYMIGHG------MLDSDLHLSSKAQVFEHPHIQDA 413
>pdb|2CMZ|A Chain A, Crystal Structure Of Vsv-Indiana (Mudd-Summers Strain)
Glycoprotein Under Its Acidic Conformation
pdb|2CMZ|B Chain B, Crystal Structure Of Vsv-Indiana (Mudd-Summers Strain)
Glycoprotein Under Its Acidic Conformation
pdb|2CMZ|C Chain C, Crystal Structure Of Vsv-Indiana (Mudd-Summers Strain)
Glycoprotein Under Its Acidic Conformation
Length = 423
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 69 PHEDSTTDASSALPFPNVRRFPSYSVSMNEVDMQILRDQDNSISSESKVFSQLGIEDA 126
P+ED + L + +FP Y + + D D +SS+++VF I+DA
Sbjct: 362 PYEDVEIGPNGVLRTSSGYKFPLYMIGHG------MLDSDLHLSSKAQVFEHPHIQDA 413
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 56 YALQLQQTARTREPHEDSTTDASSALPFPNVRRFPSYSVSMNEVDMQILR 105
Y++ ++ RT+E + D P+ RR M E D ++LR
Sbjct: 486 YSMVAKEAERTKEEKGEELVDFELLKDLPDTRRLYYEDPFMKEFDAKVLR 535
>pdb|3CRC|A Chain A, Crystal Structure Of Escherichia Coli Mazg, The
Regulator Of Nutritional Stress Response
pdb|3CRC|B Chain B, Crystal Structure Of Escherichia Coli Mazg, The
Regulator Of Nutritional Stress Response
Length = 265
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 21 ISPNSLRKFAEIAEKCLREDGDD-RPTMRDVLWDLEYALQLQQ 62
I+P +L + E+ + RED DD R + D+L+ + + Q+ Q
Sbjct: 34 IAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQ 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,520,638
Number of Sequences: 62578
Number of extensions: 125561
Number of successful extensions: 359
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 40
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)