BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033107
         (127 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K6B|A Chain A, Solution Structure Of 1-112 Fragment Of Human Programmed
          Cell Death 5 Protein
          Length = 113

 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 7/93 (7%)

Query: 2  ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARE 61
          AD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR 
Sbjct: 3  ADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARA 55

Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 56 RLSNLALVKPEKTKAVENYLIQMARYGQLSEKV 88


>pdb|2CRU|A Chain A, Solution Structure Of Programmed Cell Death 5
          Length = 118

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 7/87 (8%)

Query: 8  AIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIA 67
           +R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR RL+ +A
Sbjct: 7  GLRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA 59

Query: 68 LVKPEKARGVEDIILRSAQMGQIVEKV 94
          LVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 60 LVKPEKTKAVENYLIQMARYGQLSEKV 86


>pdb|2JXN|A Chain A, Solution Structure Of S. Cerevisiae Pdcd5-Like Protein
          Ymr074cp
          Length = 127

 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 3  DPELEAIRQRRMQELMAQQG-VGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARE 61
          DPEL+ IR+ R+ +L    G     +NS  +    E++           ++  L  +A E
Sbjct: 2  DPELQCIRECRLAQLKNNSGGTNGDRNSGANNGGGENSAPVG-----AAIANFLEPQALE 56

Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          RL+R+ALV+ ++A+ VE  + +      +  K+
Sbjct: 57 RLSRVALVRRDRAQAVETYLKKLIATNNVTHKI 89


>pdb|1EIJ|A Chain A, Nmr Ensemble Of Methanobacterium Thermoautotrophicum
          Protein 1615
          Length = 80

 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 45 ERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          +++Q+M+ QIL+ EAR RLA + L +P+    +E  +++ AQMG++  K+
Sbjct: 8  QKKQIMM-QILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKI 56


>pdb|2FH0|A Chain A, Nmr Ensemble Of The Yeast Saccharomyces Cerevisiae
          Protein Ymr074cp Core Region
          Length = 81

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 51 LSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKV 94
          ++  L  +A ERL+R+ALV+ ++A+ VE  + +      +  K+
Sbjct: 11 IANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKI 54


>pdb|1YYB|A Chain A, Solution Structure Of 1-26 Fragment Of Human Programmed
          Cell Death 5 Protein
          Length = 27

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 17/21 (80%)

Query: 2  ADPELEAIRQRRMQELMAQQG 22
          AD ELEA+R++R+ EL A+ G
Sbjct: 3  ADEELEALRRQRLAELQAKHG 23


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.130    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,804,914
Number of Sequences: 62578
Number of extensions: 84773
Number of successful extensions: 288
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 12
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)