Query 033107
Match_columns 127
No_of_seqs 113 out of 312
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 16:11:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jxn_A Uncharacterized protein 100.0 2.7E-40 9.2E-45 246.2 -0.8 111 2-116 1-115 (127)
2 2hvu_A PDCD5-like protein; YMR 100.0 2.4E-40 8.1E-45 243.7 -4.7 110 3-116 2-115 (116)
3 2cru_A Programmed cell death p 100.0 2.9E-38 9.8E-43 233.0 0.6 109 2-117 1-111 (118)
4 1eij_A Hypothetical protein MT 100.0 2.8E-31 9.6E-36 184.6 2.1 72 44-116 6-77 (80)
5 2fh0_A Hypothetical 16.0 kDa p 100.0 6.1E-31 2.1E-35 183.4 2.6 73 44-116 4-80 (81)
6 1yyb_A Programmed cell death p 97.4 5.8E-05 2E-09 42.4 2.0 21 2-22 3-23 (27)
7 1wi9_A Protein C20ORF116 homol 62.0 5.3 0.00018 26.8 2.5 34 76-123 37-70 (72)
8 2ahq_A Sigma-54, RNA polymeras 59.1 15 0.00053 24.3 4.4 31 74-104 18-48 (76)
9 1a0r_P Phosducin, MEKA, PP33; 47.9 11 0.00038 29.2 2.6 19 3-21 87-105 (245)
10 1rro_A RAT oncomodulin; calciu 39.7 12 0.00039 23.5 1.3 13 91-103 21-33 (108)
11 2trc_P Phosducin, MEKA, PP33; 37.2 21 0.00072 26.6 2.6 19 3-21 74-92 (217)
12 5pal_A Parvalbumin; calcium-bi 36.1 31 0.0011 21.4 3.0 28 89-116 72-99 (109)
13 2kyc_A Parvalbumin-3, parvalbu 36.0 15 0.0005 23.0 1.4 13 91-103 21-33 (108)
14 2lhi_A Calmodulin, serine/thre 35.3 24 0.00083 24.7 2.6 26 90-116 113-138 (176)
15 1ufm_A COP9 complex subunit 4; 35.2 16 0.00053 24.3 1.5 23 74-96 44-66 (84)
16 2es4_D Lipase chaperone; prote 34.7 1.5E+02 0.005 24.3 7.5 60 46-107 252-311 (332)
17 3nso_A Protein S100-A3; EF-han 33.4 29 0.00098 23.2 2.6 26 91-116 47-72 (101)
18 3rm1_A Protein S100-B; alpha-h 32.7 30 0.001 21.7 2.5 14 92-105 67-80 (92)
19 1avs_A Troponin C; muscle cont 32.1 36 0.0012 20.6 2.7 26 91-116 50-75 (90)
20 2kpo_A Rossmann 2X2 fold prote 31.8 34 0.0011 24.0 2.8 28 89-117 28-55 (110)
21 2b1u_A Calmodulin-like protein 31.0 27 0.00093 19.8 1.9 25 92-116 37-61 (71)
22 4eto_A Protein S100-A4; calciu 30.6 27 0.00092 22.6 2.0 24 93-116 49-72 (93)
23 3i5g_C Myosin catalytic light 29.6 34 0.0012 23.6 2.6 25 92-116 116-142 (159)
24 2lmt_A Calmodulin-related prot 29.5 26 0.00088 23.3 1.8 25 92-116 114-138 (148)
25 1s6j_A CDPK, calcium-dependent 29.1 34 0.0012 20.3 2.2 27 90-116 52-78 (87)
26 1pva_A Parvalbumin; calcium bi 28.1 42 0.0014 20.8 2.6 26 91-116 75-100 (110)
27 2ktg_A Calmodulin, putative; e 27.9 40 0.0014 19.9 2.4 26 91-116 44-69 (85)
28 1c7v_A CAVP, calcium vector pr 27.5 45 0.0015 19.6 2.5 25 92-116 40-64 (81)
29 4b4t_O 26S proteasome regulato 27.4 28 0.00097 28.3 2.0 23 74-96 321-343 (393)
30 2l09_A ASR4154 protein; proto- 27.4 36 0.0012 21.9 2.2 42 55-101 5-47 (62)
31 2obh_A Centrin-2; DNA repair c 27.3 38 0.0013 22.1 2.4 25 92-116 110-134 (143)
32 2kn2_A Calmodulin; S MAPK phos 27.3 45 0.0015 20.1 2.6 14 92-105 60-73 (92)
33 2m2b_A RNA-binding protein 10; 27.2 48 0.0016 22.1 2.9 33 88-120 29-61 (131)
34 1rwy_A Parvalbumin alpha; EF-h 27.2 54 0.0019 20.2 3.0 26 91-116 74-99 (109)
35 1tiz_A Calmodulin-related prot 27.2 33 0.0011 19.1 1.8 25 92-116 32-56 (67)
36 4fur_A Urease subunit gamma 2; 26.9 47 0.0016 23.6 2.9 42 57-103 22-64 (104)
37 2lv7_A Calcium-binding protein 26.8 19 0.00064 23.6 0.7 25 92-116 67-91 (100)
38 1k9u_A Polcalcin PHL P 7; poll 26.7 69 0.0024 18.5 3.3 24 93-116 34-57 (78)
39 4ep8_A Urease subunit gamma; a 26.4 44 0.0015 23.6 2.6 33 57-89 18-51 (100)
40 2y5i_A S100Z, S100 calcium bin 26.4 42 0.0015 21.7 2.4 23 94-116 50-72 (99)
41 2kvc_A Putative uncharacterize 26.3 35 0.0012 24.1 2.1 29 92-125 37-65 (103)
42 3j04_B Myosin regulatory light 25.8 43 0.0015 21.3 2.4 25 92-116 107-131 (143)
43 4ds7_A Calmodulin, CAM; protei 25.8 48 0.0017 21.0 2.6 24 92-116 115-138 (147)
44 3zwh_A Protein S100-A4; Ca-bin 24.9 44 0.0015 22.2 2.4 24 93-116 52-75 (104)
45 4ac7_A Urease subunit gamma; h 24.7 50 0.0017 23.3 2.6 43 56-103 17-60 (100)
46 3fs7_A Parvalbumin, thymic; ca 24.6 54 0.0019 20.3 2.6 26 91-116 75-100 (109)
47 2kru_A Light-independent proto 24.4 35 0.0012 22.1 1.6 42 55-101 6-48 (63)
48 3n22_A Protein S100-A2; EF-han 24.0 35 0.0012 22.3 1.7 15 92-106 69-83 (98)
49 1exr_A Calmodulin; high resolu 24.0 44 0.0015 21.7 2.2 25 92-116 114-138 (148)
50 2ovk_B RLC, myosin regulatory 23.9 33 0.0011 22.3 1.5 23 93-116 117-139 (153)
51 2fvh_A Urease gamma subunit; p 23.5 53 0.0018 23.9 2.6 33 57-89 38-71 (120)
52 3oq2_A Crispr-associated prote 23.4 12 0.0004 25.7 -0.9 55 56-118 20-77 (103)
53 2lky_A Uncharacterized protein 22.9 44 0.0015 23.9 2.1 30 91-125 38-67 (112)
54 1j55_A S-100P protein; metal b 22.4 34 0.0012 21.8 1.3 23 94-116 49-71 (95)
55 3fwb_A Cell division control p 21.6 55 0.0019 21.1 2.3 24 93-116 128-151 (161)
56 1ik9_C DNA ligase IV; DNA END 21.5 54 0.0019 18.8 1.9 18 90-107 18-35 (37)
57 2pvb_A Protein (parvalbumin); 21.4 69 0.0023 19.7 2.6 25 92-116 75-99 (108)
58 2qac_A Myosin A tail domain in 21.2 55 0.0019 21.0 2.2 23 92-116 115-137 (146)
59 1k8u_A S100A6, calcyclin, CACY 21.1 46 0.0016 19.8 1.7 14 92-105 66-79 (90)
60 1bu3_A Calcium-binding protein 21.1 54 0.0018 20.3 2.1 14 91-104 22-35 (109)
61 4b4t_R RPN7, 26S proteasome re 21.1 32 0.0011 28.0 1.2 53 44-96 331-383 (429)
62 2dgx_A KIAA0430 protein; RRM d 20.9 89 0.0031 19.5 3.1 21 88-108 15-35 (96)
63 2opo_A Polcalcin CHE A 3; calc 20.9 1E+02 0.0036 18.1 3.3 24 93-116 42-65 (86)
64 3kdg_A DNA mismatch repair pro 20.7 1.7E+02 0.0059 21.4 5.1 52 73-124 130-191 (197)
No 1
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-40 Score=246.22 Aligned_cols=111 Identities=23% Similarity=0.347 Sum_probs=91.9
Q ss_pred CchHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHH
Q 033107 2 ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDII 81 (127)
Q Consensus 2 ~D~ELeaIR~rRl~ELq~q~~~~~~~~~ee~~q~qee~~~~~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~L 81 (127)
||+||++||++||+|||++.|++++.... ++++++.+.+++++++|++||||+||+||+||+|||||+|++||+||
T Consensus 1 MD~ELeaIR~~Rl~ELq~q~~~~~~~~~~----~~~~~~~~~ee~r~~iL~qiL~peAreRL~rI~lVkPekA~~VE~~L 76 (127)
T 2jxn_A 1 MDPELQCIRECRLAQLKNNSGGTNGDRNS----GANNGGGENSAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYL 76 (127)
T ss_dssp CCHHHHHHHHHHHHHSSCCSCCCSSCCCC----CSCCSCCSSCCCTTHHHHTTBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcchhh----hHHHHHHHHHHHHHHHHHHHcCHHHHHHHhcccccCHHHHHHHHHHH
Confidence 56799999999999999887643322211 12233445578899999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCChHHHHHHHHHhhhhh---c-CCeeE
Q 033107 82 LRSAQMGQIVEKVPLCLLRTQCWMDAQII---S-QNIVY 116 (127)
Q Consensus 82 iqlaq~Gql~~kI~e~~Lk~iL~~~~q~~---~-~~i~~ 116 (127)
|+||++|+|++||||++||+||..+++.. + -+|+|
T Consensus 77 i~lAq~Gql~~kVsE~~Lk~iL~~vs~~~~kk~~~KI~f 115 (127)
T 2jxn_A 77 KKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIF 115 (127)
T ss_dssp HHHHHHSCCCSCBCHHHHHHHHHHHHHHCCSCCCCSCSC
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhhhcccCcceeEee
Confidence 99999999999999999999999997632 2 36776
No 2
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=100.00 E-value=2.4e-40 Score=243.68 Aligned_cols=110 Identities=23% Similarity=0.345 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHH
Q 033107 3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIIL 82 (127)
Q Consensus 3 D~ELeaIR~rRl~ELq~q~~~~~~~~~ee~~q~qee~~~~~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Li 82 (127)
|+||++||++||+|||+++|++++++++. +++++++.+++|+++|++||||+||+||+||+|||||+|++||+|||
T Consensus 2 D~ELe~IR~~rl~eLq~q~~~~~~~~~~~----q~e~~~~~ee~r~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~li 77 (116)
T 2hvu_A 2 DPELQCIRECRLAQLKNNSGGTNGDRNSG----ANNGGGENSAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLK 77 (116)
T ss_dssp CSHHHHHHHHHHHTCSCTTSCSSCCCCCC----SSSCSSSCCCCSSTTTTTTBCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCCcchh----HHHHHHHHHHHHHHHHHHHcCHHHHHHHHhHhhcCHHHHHHHHHHHH
Confidence 67999999999999998876433322221 12344556889999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCChHHHHHHHHHhhhhh--c--CCeeE
Q 033107 83 RSAQMGQIVEKVPLCLLRTQCWMDAQII--S--QNIVY 116 (127)
Q Consensus 83 qlaq~Gql~~kI~e~~Lk~iL~~~~q~~--~--~~i~~ 116 (127)
+||++|+|++||||++||+||..++... + .+|+|
T Consensus 78 ~laq~Gql~~ki~e~~L~~lL~~i~~~~~kk~~~kI~f 115 (116)
T 2hvu_A 78 KLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIF 115 (116)
T ss_dssp HHHHHSCCSSCBCHHHHHHHHHHHHHHCCSCCCSSSSC
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhHHHhhccCCceee
Confidence 9999999999999999999999997642 2 48877
No 3
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=100.00 E-value=2.9e-38 Score=233.01 Aligned_cols=109 Identities=33% Similarity=0.462 Sum_probs=94.3
Q ss_pred CchHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHH
Q 033107 2 ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDII 81 (127)
Q Consensus 2 ~D~ELeaIR~rRl~ELq~q~~~~~~~~~ee~~q~qee~~~~~ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~L 81 (127)
.|++|++||++||+|||+++|+ + +. +++++++++.+++|++||++||||+||+||+||+|||||+|++||+||
T Consensus 1 ~~~~Le~iR~~rl~eLq~q~g~--~-~~----~~~e~~~~~~ee~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~L 73 (118)
T 2cru_A 1 GSSGSSGLRRQRLAELQAKHGD--P-GD----AAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYL 73 (118)
T ss_dssp CCCSCCCCCCCCCCCCCCCSSC--C-TH----HHHHHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhCC--c-ch----hHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHH
Confidence 3678999999999999987652 1 11 234566677889999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCChHHHHHHHHHhhhhh--cCCeeEe
Q 033107 82 LRSAQMGQIVEKVPLCLLRTQCWMDAQII--SQNIVYL 117 (127)
Q Consensus 82 iqlaq~Gql~~kI~e~~Lk~iL~~~~q~~--~~~i~~~ 117 (127)
|+|||+|+|++||||++||+||..++... +.+|+|-
T Consensus 74 I~lAq~Gqi~~kItee~Lk~lL~~i~~~~~~~~~i~i~ 111 (118)
T 2cru_A 74 IQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFN 111 (118)
T ss_dssp HHHHHHTCCCSCBCHHHHHHHHHHHTTSCCCCCCCCCC
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHhccCCCceeEee
Confidence 99999999999999999999999998543 3578774
No 4
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=99.96 E-value=2.8e-31 Score=184.65 Aligned_cols=72 Identities=28% Similarity=0.364 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 44 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 44 ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
+++|+++|++|||||||+||+||+|||||+|++||+|||+|||+|+|++||||++||+||..++.+. .+|+|
T Consensus 6 ee~r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i~~~~-~~i~i 77 (80)
T 1eij_A 6 EMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGKK-REIKI 77 (80)
T ss_dssp CCSSHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHcccc-Cceee
Confidence 5788999999999999999999999999999999999999999999999999999999999998665 44665
No 5
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-31 Score=183.40 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhh--hh--hcCCeeE
Q 033107 44 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDA--QI--ISQNIVY 116 (127)
Q Consensus 44 ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~iL~~~~--q~--~~~~i~~ 116 (127)
+++|+++|++||||+||+||+||+|||||+|++||+|||+|||+|+|++||||++||+||..++ .+ .+.+|+|
T Consensus 4 e~~r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i~~~~~~~~~tkI~f 80 (81)
T 2fh0_A 4 SAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIF 80 (81)
T ss_dssp CCCSSHHHHTTBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBCHHHHHHHHHHHHHHCSSCCCSSCCC
T ss_pred HHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhHhhccCccceeee
Confidence 5678999999999999999999999999999999999999999999999999999999999998 32 2348877
No 6
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=97.44 E-value=5.8e-05 Score=42.43 Aligned_cols=21 Identities=57% Similarity=0.893 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHHHHHcC
Q 033107 2 ADPELEAIRQRRMQELMAQQG 22 (127)
Q Consensus 2 ~D~ELeaIR~rRl~ELq~q~~ 22 (127)
+|+||++||++||++||++.|
T Consensus 3 ~d~ELeair~~rl~~lq~~~g 23 (27)
T 1yyb_A 3 ADEELEALRRQRLAELQAKHG 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHHHHhccC
Confidence 367999999999999998765
No 7
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=62.04 E-value=5.3 Score=26.78 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHHHHhhhhhcCCeeEeecccch
Q 033107 76 GVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQIISQNIVYLSDNEIR 123 (127)
Q Consensus 76 ~VE~~Liqlaq~Gql~~kI~e~~Lk~iL~~~~q~~~~~i~~~~~~~~~ 123 (127)
.+-+.|-.|-..|+|+|-++|. ||..|||++|..
T Consensus 37 ~~i~RI~~Le~~g~ltGViDDR--------------GKfIyIs~eE~~ 70 (72)
T 1wi9_A 37 DAINRIQDLLTEGTLTGVIDDR--------------GKFIYITPSGPS 70 (72)
T ss_dssp HHHHHHHHHHHHSSSCEEECTT--------------CCEEECCCSSCC
T ss_pred HHHHHHHHHHHCCCeEEEEeCC--------------CCEEEecHHHhh
Confidence 3446677788999999988874 999999999864
No 8
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=59.08 E-value=15 Score=24.33 Aligned_cols=31 Identities=3% Similarity=-0.172 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 033107 74 ARGVEDIILRSAQMGQIVEKVPLCLLRTQCW 104 (127)
Q Consensus 74 A~~VE~~Liqlaq~Gql~~kI~e~~Lk~iL~ 104 (127)
+..|-..|..++..---..|+||+.|.++|.
T Consensus 18 ~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~ 48 (76)
T 2ahq_A 18 QGELMKLIKEIVENEDKRKPYSDQEIANILK 48 (76)
T ss_dssp HHHHHHHHHHHGGGCCSSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 5789999999999998889999999999996
No 9
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=47.89 E-value=11 Score=29.19 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHc
Q 033107 3 DPELEAIRQRRMQELMAQQ 21 (127)
Q Consensus 3 D~ELeaIR~rRl~ELq~q~ 21 (127)
|+.|+.+|++||++|++..
T Consensus 87 e~fL~~~r~~Rl~el~~~~ 105 (245)
T 1a0r_P 87 ENCLRKYRRQCMQDMHQKL 105 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3469999999999999765
No 10
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=39.70 E-value=12 Score=23.52 Aligned_cols=13 Identities=0% Similarity=-0.184 Sum_probs=8.2
Q ss_pred CCCCChHHHHHHH
Q 033107 91 VEKVPLCLLRTQC 103 (127)
Q Consensus 91 ~~kI~e~~Lk~iL 103 (127)
.|.||-+++..++
T Consensus 21 ~g~i~~~eF~~~~ 33 (108)
T 1rro_A 21 PDTFEPQKFFQTS 33 (108)
T ss_dssp TTCCCHHHHHHHH
T ss_pred CCCcCHHHHHHHH
Confidence 4567777766655
No 11
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=37.20 E-value=21 Score=26.61 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHHHHc
Q 033107 3 DPELEAIRQRRMQELMAQQ 21 (127)
Q Consensus 3 D~ELeaIR~rRl~ELq~q~ 21 (127)
|+.|+.+|++||++|++..
T Consensus 74 ~~fl~~~r~~Rl~el~~~~ 92 (217)
T 2trc_P 74 EGCLRKYRRQCMQDMHQKL 92 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998655
No 12
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=36.11 E-value=31 Score=21.45 Aligned_cols=28 Identities=4% Similarity=-0.280 Sum_probs=20.3
Q ss_pred CCCCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 89 QIVEKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 89 ql~~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.+..+++++++..++...-..+.|.|.|
T Consensus 72 ~~g~~~~~~~~~~~~~~~D~~~dg~i~~ 99 (109)
T 5pal_A 72 AHGRDLNDTETKALLAAGDSDHDGKIGA 99 (109)
T ss_dssp TTCCCCCHHHHHHHHHHHCTTCSSSEEH
T ss_pred HcCCCCCHHHHHHHHHHhCCCCCCcCcH
Confidence 3456788888888888776666777765
No 13
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=36.03 E-value=15 Score=23.00 Aligned_cols=13 Identities=0% Similarity=-0.220 Sum_probs=7.5
Q ss_pred CCCCChHHHHHHH
Q 033107 91 VEKVPLCLLRTQC 103 (127)
Q Consensus 91 ~~kI~e~~Lk~iL 103 (127)
.|.||-+++..++
T Consensus 21 ~g~i~~~eF~~~~ 33 (108)
T 2kyc_A 21 PDSFSPKKFFQIS 33 (108)
T ss_dssp TTTCCHHHHHHHH
T ss_pred CCcCCHHHHHHHH
Confidence 3456666666555
No 14
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=35.31 E-value=24 Score=24.74 Aligned_cols=26 Identities=19% Similarity=-0.105 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 90 IVEKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 90 l~~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
+..++|++++.+|+...- -+.|.|.|
T Consensus 113 ~g~~~~~~ei~~l~~~~d-d~dG~I~~ 138 (176)
T 2lhi_A 113 IGEKLTDAEVDDMLREVS-DGSGEINI 138 (176)
T ss_dssp TTCCCCHHHHHHHHHHHH-TTSSCBCT
T ss_pred cCcccchHHHHHHHHhhc-CCCCeEeH
Confidence 345666666666666554 44566655
No 15
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=35.20 E-value=16 Score=24.26 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCh
Q 033107 74 ARGVEDIILRSAQMGQIVEKVPL 96 (127)
Q Consensus 74 A~~VE~~Liqlaq~Gql~~kI~e 96 (127)
.+.||..|.+|+..|+|.++||.
T Consensus 44 ~~~vE~~ls~mI~~~~l~akIDq 66 (84)
T 1ufm_A 44 AAKAEKIASQMITEGRMNGFIDQ 66 (84)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEET
T ss_pred HHHHHHHHHHHHhCCcEEEEEeC
Confidence 45789999999999999998864
No 16
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=34.75 E-value=1.5e+02 Score=24.33 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhh
Q 033107 46 RRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDA 107 (127)
Q Consensus 46 ~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~iL~~~~ 107 (127)
.+..+..+.+.|||-+||..+---+-+.-..+..|+.+..+-- ..-+|+++-..-+..+-
T Consensus 252 ~~~~~R~~~vG~EaA~RL~~Ldqqra~wq~r~~~Y~~eR~~I~--~~~Ls~~~kq~qI~~LR 311 (332)
T 2es4_D 252 QMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIA--AQGLAPQDRDARIAQLR 311 (332)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Confidence 3456777899999999999999999999999999999866542 45688887776666553
No 17
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=33.43 E-value=29 Score=23.17 Aligned_cols=26 Identities=4% Similarity=-0.081 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 91 VEKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 91 ~~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
..++|++++.+|+..+-.-+.|.|.|
T Consensus 47 g~~~~~~ev~~~i~~~D~dgDG~Idf 72 (101)
T 3nso_A 47 PTEFRECDYNKFMSVLDTNKDCEVDF 72 (101)
T ss_dssp CCTTCHHHHHHHHHHHHHCCCSCEEH
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCcH
Confidence 34666666666666665555666665
No 18
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=32.66 E-value=30 Score=21.73 Aligned_cols=14 Identities=7% Similarity=-0.104 Sum_probs=6.6
Q ss_pred CCCChHHHHHHHHH
Q 033107 92 EKVPLCLLRTQCWM 105 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~ 105 (127)
|+|+=++++.++..
T Consensus 67 G~I~f~EF~~~~~~ 80 (92)
T 3rm1_A 67 GECDFQEFMAFVAM 80 (92)
T ss_dssp SSBCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 44444444444443
No 19
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=32.12 E-value=36 Score=20.59 Aligned_cols=26 Identities=12% Similarity=-0.218 Sum_probs=18.7
Q ss_pred CCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 91 VEKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 91 ~~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
..+++++++..++...-..+.|.|.|
T Consensus 50 g~~~~~~~~~~l~~~~D~~~dg~i~~ 75 (90)
T 1avs_A 50 GQNPTKEELDAIIEEVDEDGSGTIDF 75 (90)
T ss_dssp TCCCCHHHHHHHHHHHCTTCCSSEEH
T ss_pred CCCCCHHHHHHHHHHhCCCCCCeEeH
Confidence 34678888888887776666677765
No 20
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=31.76 E-value=34 Score=24.02 Aligned_cols=28 Identities=21% Similarity=-0.046 Sum_probs=22.5
Q ss_pred CCCCCCChHHHHHHHHHhhhhhcCCeeEe
Q 033107 89 QIVEKVPLCLLRTQCWMDAQIISQNIVYL 117 (127)
Q Consensus 89 ql~~kI~e~~Lk~iL~~~~q~~~~~i~~~ 117 (127)
.++.--|+++|+.-|.. +++.|+||+.+
T Consensus 28 elrtvktedelkkylee-frkesqnikvl 55 (110)
T 2kpo_A 28 ELRTVKTEDELKKYLEE-FRKESQNIKVL 55 (110)
T ss_dssp EEEECCSHHHHHHHHHH-HTSSTTSEEEE
T ss_pred eeeeeccHHHHHHHHHH-HHhhccCeEEE
Confidence 45566799999999976 57889999875
No 21
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=31.04 E-value=27 Score=19.77 Aligned_cols=25 Identities=12% Similarity=0.035 Sum_probs=17.9
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.+++++++..++...-..+.|.|.|
T Consensus 37 ~~~~~~~~~~~~~~~d~~~~g~i~~ 61 (71)
T 2b1u_A 37 QPLPQEELDAMIREADVDQDGRVNY 61 (71)
T ss_dssp CSSCHHHHHHHHHHCCSSSSSEEET
T ss_pred CCCCHHHHHHHHHHhCCCCCCcCcH
Confidence 4678888888887776666666665
No 22
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=30.63 E-value=27 Score=22.56 Aligned_cols=24 Identities=0% Similarity=-0.106 Sum_probs=10.6
Q ss_pred CCChHHHHHHHHHhhhhhcCCeeE
Q 033107 93 KVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 93 kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
++|++++.+++...-.-+.|.|.|
T Consensus 49 ~~~~~ev~~~i~~~D~d~DG~Idf 72 (93)
T 4eto_A 49 RTDEAAFQKLMSNLDSNRDNEVDF 72 (93)
T ss_dssp -CCHHHHHHHHHHHCTTSSSSBCH
T ss_pred CCCHHHHHHHHHHHCCCCCCCCcH
Confidence 344444444444444444444443
No 23
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=29.63 E-value=34 Score=23.60 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=15.4
Q ss_pred CCCChHHHHHHHHHhh--hhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDA--QIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~--q~~~~~i~~ 116 (127)
.++|++++..|+...- .-+.|.|.|
T Consensus 116 ~~ls~~e~~~l~~~~D~~~d~dG~I~~ 142 (159)
T 3i5g_C 116 ERITEDQCNDIFTFCDIREDIDGNIKY 142 (159)
T ss_dssp SCCCHHHHHHHHHHTTCCCCSSCCEEH
T ss_pred CCCCHHHHHHHHHHhCcCCCCCCeEeH
Confidence 5677777777766543 234567766
No 24
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=29.53 E-value=26 Score=23.29 Aligned_cols=25 Identities=20% Similarity=-0.096 Sum_probs=17.4
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.++|++++..|+...-.-+.|.|.|
T Consensus 114 ~~~~~~e~~~l~~~~D~d~dG~I~~ 138 (148)
T 2lmt_A 114 EKVTDEEIDEMIREADFDGDGMINY 138 (148)
T ss_dssp CCCCHHHHHHHHHHHCCSCCSSEEH
T ss_pred ccccHHHHHHHHHHhCCCCCCeEeH
Confidence 4667777777777666666677766
No 25
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=29.07 E-value=34 Score=20.31 Aligned_cols=27 Identities=11% Similarity=-0.066 Sum_probs=20.2
Q ss_pred CCCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 90 IVEKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 90 l~~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
+..+++++++..++...-..+.|.|.|
T Consensus 52 ~~~~~~~~~~~~l~~~~d~~~~g~i~~ 78 (87)
T 1s6j_A 52 VGSELMESEIKDLMDAADIDKSGTIDY 78 (87)
T ss_dssp TTSSCCHHHHHHHHHHHCTTCSSEECH
T ss_pred hCCCCCHHHHHHHHHHhCCCCCCcCcH
Confidence 346788888888888877666777665
No 26
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=28.14 E-value=42 Score=20.76 Aligned_cols=26 Identities=4% Similarity=-0.255 Sum_probs=16.4
Q ss_pred CCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 91 VEKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 91 ~~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
..+++++++..++...-..+.|.|.|
T Consensus 75 g~~~~~~~~~~~~~~~d~~~dg~i~~ 100 (110)
T 1pva_A 75 GRDLTDAETKAFLKAADKDGDGKIGI 100 (110)
T ss_dssp CCCCCHHHHHHHHHHHCTTCSSSBCH
T ss_pred CCCCCHHHHHHHHHHhCCCCCCeEcH
Confidence 34567777777777665555566654
No 27
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=27.89 E-value=40 Score=19.91 Aligned_cols=26 Identities=4% Similarity=-0.336 Sum_probs=15.9
Q ss_pred CCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 91 VEKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 91 ~~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
..+++++++..++.....-+.|.|.|
T Consensus 44 g~~~~~~~~~~~~~~~d~~~~g~i~~ 69 (85)
T 2ktg_A 44 GANPTKQKISEIVKDYDKDNSGKFDQ 69 (85)
T ss_dssp SSCCCHHHHHHHHHHHSSSSCSEEEH
T ss_pred CCCCCHHHHHHHHHHhCCCCCCcCcH
Confidence 34566777777766665555565554
No 28
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=27.53 E-value=45 Score=19.55 Aligned_cols=25 Identities=8% Similarity=-0.197 Sum_probs=17.2
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.+++++++..++...-..+.|.|.|
T Consensus 40 ~~~~~~~~~~~~~~~D~~~dg~i~~ 64 (81)
T 1c7v_A 40 EPLTDAEVEEAMKEADEDGNGVIDI 64 (81)
T ss_dssp CCCCHHHHHHHHHHHCSSGGGSEEH
T ss_pred CCCCHHHHHHHHHHhCCCCCCcCcH
Confidence 5677777777777766666666665
No 29
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.43 E-value=28 Score=28.33 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCh
Q 033107 74 ARGVEDIILRSAQMGQIVEKVPL 96 (127)
Q Consensus 74 A~~VE~~Liqlaq~Gql~~kI~e 96 (127)
.+.||..|+.+...|.|.|+||.
T Consensus 321 ~~evE~lli~aI~~glI~GkIDQ 343 (393)
T 4b4t_O 321 KDNVEHLVMRAISLGLLKGSIDQ 343 (393)
T ss_dssp HHHHHHHHHHHHHHSCSSSCEET
T ss_pred HHHHHHHHHHHHHcCCEEEEEcC
Confidence 35799999999999999999864
No 30
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=27.36 E-value=36 Score=21.94 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=31.1
Q ss_pred CCHHHHHHhchh-hccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHH
Q 033107 55 LSTEARERLARI-ALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRT 101 (127)
Q Consensus 55 Lt~eAreRL~rI-~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~ 101 (127)
-||||..+|++| ..|||---+.+|.+-. +.| + ..||-+.+-+
T Consensus 5 Wt~EAe~~LkkIP~FVR~kvrr~tE~~Ar---e~G-~-~~IT~ev~~~ 47 (62)
T 2l09_A 5 WTSEAKTKLKNIPFFARSQAKARIEQLAR---QAE-Q-DIVTPELVEQ 47 (62)
T ss_dssp ECHHHHHHHHTSCGGGHHHHHHHHHHHHH---HTT-C-SEECHHHHHH
T ss_pred CCHHHHHHHHhCCHHHHHHHHHHHHHHHH---HcC-C-CeEcHHHHHH
Confidence 489999999999 8899988888888755 333 2 3467666544
No 31
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=27.32 E-value=38 Score=22.14 Aligned_cols=25 Identities=8% Similarity=-0.197 Sum_probs=17.1
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.++|++++..++...-.-+.|.|.|
T Consensus 110 ~~~~~~~~~~~~~~~D~d~dG~I~~ 134 (143)
T 2obh_A 110 ENLTDEELQEMIDEADRDGDGEVSE 134 (143)
T ss_dssp CCCCHHHHHHHHHHHCTTSSSSBCH
T ss_pred CCCCHHHHHHHHHHhCCCCCCcEeH
Confidence 4577777777777666666677665
No 32
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=27.29 E-value=45 Score=20.06 Aligned_cols=14 Identities=7% Similarity=-0.140 Sum_probs=7.2
Q ss_pred CCCChHHHHHHHHH
Q 033107 92 EKVPLCLLRTQCWM 105 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~ 105 (127)
+.||-++++.++..
T Consensus 60 g~i~~~eF~~~~~~ 73 (92)
T 2kn2_A 60 GQVNYEEFVKMMMT 73 (92)
T ss_dssp SSEEHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHh
Confidence 44555555555543
No 33
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=27.25 E-value=48 Score=22.12 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=22.6
Q ss_pred CCCCCCCChHHHHHHHHHhhhhhcCCeeEeecc
Q 033107 88 GQIVEKVPLCLLRTQCWMDAQIISQNIVYLSDN 120 (127)
Q Consensus 88 Gql~~kI~e~~Lk~iL~~~~q~~~~~i~~~~~~ 120 (127)
|.|...+|+++|++++...-...+-+|+.+.|.
T Consensus 29 ~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~ 61 (131)
T 2m2b_A 29 RNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK 61 (131)
T ss_dssp CSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS
T ss_pred eCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC
Confidence 678889999999999985543333335555443
No 34
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=27.23 E-value=54 Score=20.20 Aligned_cols=26 Identities=8% Similarity=-0.171 Sum_probs=17.5
Q ss_pred CCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 91 VEKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 91 ~~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
..+++++++..++...-..+.|.|.|
T Consensus 74 g~~~~~~~~~~~~~~~D~~~dg~i~~ 99 (109)
T 1rwy_A 74 ARDLSAKETKTLMAAGDKDGDGKIGV 99 (109)
T ss_dssp CCCCCHHHHHHHHHHHCTTCSSSEEH
T ss_pred CCCCCHHHHHHHHHHHCCCCCCcCCH
Confidence 34577777777777666666666665
No 35
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=27.20 E-value=33 Score=19.05 Aligned_cols=25 Identities=0% Similarity=-0.456 Sum_probs=13.5
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.+++++++..++...-.-+.|.|.|
T Consensus 32 ~~~~~~~~~~~~~~~D~~~dg~i~~ 56 (67)
T 1tiz_A 32 PYFTQEDIVKFFEEIDVDGNGELNA 56 (67)
T ss_dssp TTSCHHHHHHHHHHHCCSSSSEECH
T ss_pred CCCCHHHHHHHHHHHCCCCCCcCcH
Confidence 4456666666666554444454443
No 36
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Brucella melitensis biovar abortus}
Probab=26.94 E-value=47 Score=23.62 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=33.8
Q ss_pred HHHHHHhch-hhccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHHHH
Q 033107 57 TEARERLAR-IALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQC 103 (127)
Q Consensus 57 ~eAreRL~r-I~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~iL 103 (127)
-=|+.|++| ++|-.||-..-|-+.++-.|.-|+ |=.+|.+.-
T Consensus 22 ~lA~rR~~RGlkLN~pEAvAlIs~~v~E~aRdG~-----sVaelM~~g 64 (104)
T 4fur_A 22 DVALKRKNKGLKLNHPEAVAVLSAYVLDGAREGK-----TVEEVMDGA 64 (104)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHcCcccCcHHHHHHHHHHHHHHHHCCC-----CHHHHHHHH
Confidence 347888886 999999999999999999999996 445555443
No 37
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=26.78 E-value=19 Score=23.59 Aligned_cols=25 Identities=4% Similarity=-0.310 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.++|++++..|+...-.-++|.|.|
T Consensus 67 ~~~~~~ei~~l~~~~D~d~dG~I~~ 91 (100)
T 2lv7_A 67 YMPNEVELEVIIQRLDMDGDGQVDF 91 (100)
T ss_dssp CCCCTTTHHHHHHHHCSSCSSSBCH
T ss_pred CCCCHHHHHHHHHHHCCCCCCeEeH
Confidence 4677888888887776666777766
No 38
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=26.74 E-value=69 Score=18.51 Aligned_cols=24 Identities=4% Similarity=-0.287 Sum_probs=13.5
Q ss_pred CCChHHHHHHHHHhhhhhcCCeeE
Q 033107 93 KVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 93 kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
+++++++..++...-..+.|.|.|
T Consensus 34 ~~~~~~~~~~~~~~D~~~dg~i~~ 57 (78)
T 1k9u_A 34 STSADEVQRMMAEIDTDGDGFIDF 57 (78)
T ss_dssp TCCHHHHHHHHHHHCTTCSSSEEH
T ss_pred CCCHHHHHHHHHHhCCCCCCeEcH
Confidence 456666666666555555555544
No 39
>4ep8_A Urease subunit gamma; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* 1fwb_A* 1fwc_A* 1fwd_A* 1fwe_A* 1fwf_A* 1fwg_A* 1fwh_A* ...
Probab=26.44 E-value=44 Score=23.60 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=29.5
Q ss_pred HHHHHHhch-hhccCchhHHHHHHHHHHHHHcCC
Q 033107 57 TEARERLAR-IALVKPEKARGVEDIILRSAQMGQ 89 (127)
Q Consensus 57 ~eAreRL~r-I~lVKPE~A~~VE~~Liqlaq~Gq 89 (127)
-=|+.|++| ++|-.||-..-|-+.++-.|..|+
T Consensus 18 ~lA~rR~~RGlkLN~pEAvAlIs~~v~E~aRdG~ 51 (100)
T 4ep8_A 18 LVAERRLARGLKLNYPESVALISAFIMEGARDGK 51 (100)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCcccCcHHHHHHHHHHHHHHHhcCC
Confidence 347888876 999999999999999999999996
No 40
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=26.43 E-value=42 Score=21.69 Aligned_cols=23 Identities=4% Similarity=-0.146 Sum_probs=9.5
Q ss_pred CChHHHHHHHHHhhhhhcCCeeE
Q 033107 94 VPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 94 I~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
+|++++..++..+-.-+.|.|.|
T Consensus 50 ~~~~~v~~l~~~~D~d~dG~I~f 72 (99)
T 2y5i_A 50 KDPMLVEKIMNDLDSNKDNEVDF 72 (99)
T ss_dssp CCHHHHHHHHHHHCTTCSSSEEH
T ss_pred ccHHHHHHHHHHHCCCCCCcCcH
Confidence 44444444444433333344433
No 41
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=26.28 E-value=35 Score=24.10 Aligned_cols=29 Identities=3% Similarity=0.031 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeEeecccchhh
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVYLSDNEIRIM 125 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~~~~~~~~~~ 125 (127)
.++||+++.++...+...+. +++.+|+.+
T Consensus 37 r~Ltdeev~~Va~~L~~~~~-----i~~~dI~~~ 65 (103)
T 2kvc_A 37 RRLSHDEVKAVANELMRLGD-----FDQIDIGVV 65 (103)
T ss_dssp TTSCHHHHHHHHHHHHHHTS-----SCSSCHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCC-----CCHHHHHHH
Confidence 57899999999888876652 666666543
No 42
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=25.77 E-value=43 Score=21.32 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.+++++++..++...-..+.|.|.|
T Consensus 107 ~~~~~~~~~~~~~~~D~d~dg~i~~ 131 (143)
T 3j04_B 107 DRFTDEEVDEMYREAPIDKKGNFNY 131 (143)
T ss_dssp SCCCHHHHHHHHHHTTCCSSSCCCS
T ss_pred CCCCHHHHHHHHHHcCCCCCCcCcH
Confidence 4456666666666554555566654
No 43
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=25.75 E-value=48 Score=20.95 Aligned_cols=24 Identities=17% Similarity=-0.125 Sum_probs=14.9
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.+++++++..++.... .+.|.|.|
T Consensus 115 ~~~~~~~~~~~~~~~d-~~dg~i~~ 138 (147)
T 4ds7_A 115 EKLTDAEVDEMLREVS-DGSGEINI 138 (147)
T ss_dssp CCCCHHHHHHHHHHHS-SSCSSEEH
T ss_pred CCCCHHHHHHHHHHhc-CCCCcCcH
Confidence 4566666666666665 55566654
No 44
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=24.90 E-value=44 Score=22.21 Aligned_cols=24 Identities=0% Similarity=-0.106 Sum_probs=10.5
Q ss_pred CCChHHHHHHHHHhhhhhcCCeeE
Q 033107 93 KVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 93 kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
++|++++.+|+..+-.-+.|.|.|
T Consensus 52 ~~~~~ev~~~i~~~D~dgDG~Idf 75 (104)
T 3zwh_A 52 RTDEAAFQKLMSNLDSNRDNEVDF 75 (104)
T ss_dssp SCCHHHHHHHHHHHCTTCSSSBCH
T ss_pred CCCHHHHHHHHHHHcCCCCCCCcH
Confidence 344444444444443334444443
No 45
>4ac7_A Urease subunit gamma; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_A* 1ie7_A* 1ubp_A* 4ubp_A* 3ubp_A* 2ubp_A* 4ep8_A* 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* ...
Probab=24.71 E-value=50 Score=23.32 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=33.7
Q ss_pred CHHHHHHhch-hhccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHHHH
Q 033107 56 STEARERLAR-IALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQC 103 (127)
Q Consensus 56 t~eAreRL~r-I~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~iL 103 (127)
-.=|+.|++| ++|-.||-..-|-+.|+-.|.-|+ |=.+|.+.-
T Consensus 17 ~~lA~rR~arGlkLN~pEAvAlI~~~ilE~aRdG~-----sVaelm~~g 60 (100)
T 4ac7_A 17 SELLLRRKARGLKLNYPEAVAIITSFIMEGARDGK-----TVAMLMEEG 60 (100)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHG
T ss_pred HHHHHHHHHcccccccHHHHHHHHHHHHHHHHCCC-----CHHHHHHHh
Confidence 3447888876 999999999999999999999983 445555443
No 46
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=24.62 E-value=54 Score=20.27 Aligned_cols=26 Identities=4% Similarity=-0.236 Sum_probs=17.4
Q ss_pred CCCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 91 VEKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 91 ~~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
..+++++++..++...-..+.|.|.|
T Consensus 75 ~~~~~~~~~~~~~~~~D~~~dg~i~~ 100 (109)
T 3fs7_A 75 ARVLTSAETKAFLAAGDTDGDGKIGV 100 (109)
T ss_dssp SCCCCHHHHHHHHHHHCTTCSSSBCH
T ss_pred cccCCHHHHHHHHHHhCCCCCCcCcH
Confidence 45677777777777666666666655
No 47
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=24.38 E-value=35 Score=22.09 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=31.1
Q ss_pred CCHHHHHHhchh-hccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHH
Q 033107 55 LSTEARERLARI-ALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRT 101 (127)
Q Consensus 55 Lt~eAreRL~rI-~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~ 101 (127)
-||||..+|++| ..|||---+.+|.+-.. .|. ..||-+.+-+
T Consensus 6 Wt~EAe~~LkkIP~FVR~kvrr~tE~~Are---~G~--~~IT~ev~~~ 48 (63)
T 2kru_A 6 WTAEAEKMLGKVPFFVRKKVRKNTDNYARE---IGE--PVVTADVFRK 48 (63)
T ss_dssp ECHHHHHHHTTSCHHHHHHHHHHHHHHHHH---HTC--SEECHHHHHH
T ss_pred CCHHHHHHHHhCCHHHHHHHHHHHHHHHHH---cCC--CeEcHHHHHH
Confidence 489999999999 78898888888887653 332 3466665544
No 48
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=24.00 E-value=35 Score=22.29 Aligned_cols=15 Identities=7% Similarity=-0.144 Sum_probs=8.1
Q ss_pred CCCChHHHHHHHHHh
Q 033107 92 EKVPLCLLRTQCWMD 106 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~ 106 (127)
|+|+=++++.++..+
T Consensus 69 G~Idf~EF~~~~~~~ 83 (98)
T 3n22_A 69 QQVDFQEYAVFLALI 83 (98)
T ss_dssp SSBCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 555555555555533
No 49
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=23.99 E-value=44 Score=21.72 Aligned_cols=25 Identities=16% Similarity=-0.078 Sum_probs=14.3
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.+++++++..++...-.-+.|.|.|
T Consensus 114 ~~~~~~~~~~~~~~~d~d~dg~i~~ 138 (148)
T 1exr_A 114 EKLTDDEVDEMIREADIDGDGHINY 138 (148)
T ss_dssp CCCCHHHHHHHHHHHCSSSSSSBCH
T ss_pred CCCCHHHHHHHHHHhCCCCCCcEeH
Confidence 3466666666666554445566654
No 50
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=23.88 E-value=33 Score=22.33 Aligned_cols=23 Identities=4% Similarity=-0.049 Sum_probs=10.7
Q ss_pred CCChHHHHHHHHHhhhhhcCCeeE
Q 033107 93 KVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 93 kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
++|++++..++...-. +.|.|.|
T Consensus 117 ~~~~~~~~~~~~~~d~-~dg~I~~ 139 (153)
T 2ovk_B 117 NFSKEEIKNVWKDAPL-KNKQFNY 139 (153)
T ss_dssp CCCHHHHHHHHHHCCE-ETTEECH
T ss_pred CCCHHHHHHHHHHcCC-CCCEEeH
Confidence 3444444444444444 4455543
No 51
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=23.45 E-value=53 Score=23.90 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=29.3
Q ss_pred HHHHHHhch-hhccCchhHHHHHHHHHHHHHcCC
Q 033107 57 TEARERLAR-IALVKPEKARGVEDIILRSAQMGQ 89 (127)
Q Consensus 57 ~eAreRL~r-I~lVKPE~A~~VE~~Liqlaq~Gq 89 (127)
.=|+.|++| ++|-.||-..-|-+.|+-.|.-|+
T Consensus 38 ~LA~rR~aRGlkLN~pEAvAlIs~~ilE~aRDG~ 71 (120)
T 2fvh_A 38 ELARRRRARGLRLNHPEAIAVIADHILEGARDGR 71 (120)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcccccCcHHHHHHHHHHHHHHhHcCC
Confidence 347788876 999999999999999999999997
No 52
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=23.36 E-value=12 Score=25.68 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=38.1
Q ss_pred CHHHHHHhchhhccCchhHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhhhhh---cCCeeEee
Q 033107 56 STEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPLCLLRTQCWMDAQII---SQNIVYLS 118 (127)
Q Consensus 56 t~eAreRL~rI~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e~~Lk~iL~~~~q~~---~~~i~~~~ 118 (127)
|++.+.|+++| ++..++|. ..+|-.-.-+.+|..++..|.+.+.+.. .++|.|+.
T Consensus 20 t~~g~kr~~kv-------~k~l~~yG-~rvQ~SVFe~~lt~~~~~~L~~~L~~~id~~~Dsv~iy~ 77 (103)
T 3oq2_A 20 DPGGQRRLRRI-------AKACQDYG-QRVQYSVFECVVDPAQWAKLKHRLLSEMDKEKDCLRFYY 77 (103)
T ss_dssp SHHHHHHHHHH-------HHHHGGGE-EEEETTEEEEEECHHHHHHHHHHHHHHSCTTTCEEEEEE
T ss_pred CchhHHHHHHH-------HHHHHHhC-ccceEEEEEEEcCHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 45556666655 45566666 6666666678899999999988876654 46777653
No 53
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=22.94 E-value=44 Score=23.91 Aligned_cols=30 Identities=3% Similarity=-0.006 Sum_probs=21.9
Q ss_pred CCCCChHHHHHHHHHhhhhhcCCeeEeecccchhh
Q 033107 91 VEKVPLCLLRTQCWMDAQIISQNIVYLSDNEIRIM 125 (127)
Q Consensus 91 ~~kI~e~~Lk~iL~~~~q~~~~~i~~~~~~~~~~~ 125 (127)
+.++||+++.++...+...+- +++.+|+.+
T Consensus 38 ~r~Ltdeev~~Va~~L~~~~~-----i~~~dI~~~ 67 (112)
T 2lky_A 38 TRRLTNDEIKAIAEDLEKRAH-----FDHIDIGVL 67 (112)
T ss_dssp TTTCCHHHHHHHHHHHHHHCC-----CSCCCSHHH
T ss_pred cccCCHHHHHHHHHHHHHcCC-----CCHHHHHHH
Confidence 367999999999988876642 666666643
No 54
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A
Probab=22.42 E-value=34 Score=21.83 Aligned_cols=23 Identities=0% Similarity=-0.321 Sum_probs=8.3
Q ss_pred CChHHHHHHHHHhhhhhcCCeeE
Q 033107 94 VPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 94 I~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
+|++++..++...-.-+.|.|.|
T Consensus 49 ~~~~~v~~l~~~~D~d~dG~I~f 71 (95)
T 1j55_A 49 KDKDAVDKLLKDLDANGDAQVDF 71 (95)
T ss_dssp ---CHHHHHHHHHCSSSSSSEEH
T ss_pred cCHHHHHHHHHHhCCCCCCcCCH
Confidence 34444444444433333344443
No 55
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=21.60 E-value=55 Score=21.13 Aligned_cols=24 Identities=13% Similarity=-0.303 Sum_probs=11.4
Q ss_pred CCChHHHHHHHHHhhhhhcCCeeE
Q 033107 93 KVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 93 kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
+++++++..++...-..+.|.|.|
T Consensus 128 ~~~~~~~~~~~~~~d~~~~g~i~~ 151 (161)
T 3fwb_A 128 TLTDEELRAMIEEFDLDGDGEINE 151 (161)
T ss_dssp CCCHHHHHHHHHTTCSSSSSSEEH
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcH
Confidence 444444444444444444455544
No 56
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=21.52 E-value=54 Score=18.76 Aligned_cols=18 Identities=11% Similarity=-0.175 Sum_probs=14.8
Q ss_pred CCCCCChHHHHHHHHHhh
Q 033107 90 IVEKVPLCLLRTQCWMDA 107 (127)
Q Consensus 90 l~~kI~e~~Lk~iL~~~~ 107 (127)
....+|.++|+.||..+.
T Consensus 18 Y~rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 18 YFIDTDLNQLKEVFSGIK 35 (37)
T ss_dssp SSSCCCHHHHHHHHHTCC
T ss_pred ccCcCCHHHHHHHHHHcc
Confidence 457899999999998763
No 57
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=21.40 E-value=69 Score=19.73 Aligned_cols=25 Identities=4% Similarity=-0.306 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.+++++++..++...-..+.|.|.|
T Consensus 75 ~~~~~~~~~~~~~~~D~~~dg~i~~ 99 (108)
T 2pvb_A 75 RALTDAETKAFLADGDKDGDGMIGV 99 (108)
T ss_dssp CCCCHHHHHHHHHHHCTTCSSSBCH
T ss_pred CCCCHHHHHHHHHHhCCCCCCcEeH
Confidence 4567777777776665555566654
No 58
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=21.20 E-value=55 Score=21.01 Aligned_cols=23 Identities=13% Similarity=-0.126 Sum_probs=12.0
Q ss_pred CCCChHHHHHHHHHhhhhhcCCeeE
Q 033107 92 EKVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
.++|++++..++... -+.|.|.|
T Consensus 115 ~~~~~~~~~~~~~~~--d~dg~i~~ 137 (146)
T 2qac_A 115 DALTDQEAIDALNAF--SSEDNIDY 137 (146)
T ss_dssp SCCCHHHHHHHHHHH--CSSSEEEH
T ss_pred CCCCHHHHHHHHHHc--CCCCcCcH
Confidence 345555655555555 33455544
No 59
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=21.14 E-value=46 Score=19.77 Aligned_cols=14 Identities=14% Similarity=-0.142 Sum_probs=6.9
Q ss_pred CCCChHHHHHHHHH
Q 033107 92 EKVPLCLLRTQCWM 105 (127)
Q Consensus 92 ~kI~e~~Lk~iL~~ 105 (127)
|+||-++++.++..
T Consensus 66 g~i~~~eF~~~~~~ 79 (90)
T 1k8u_A 66 QEVNFQEYVTFLGA 79 (90)
T ss_dssp CEEEHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 44555555555443
No 60
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=21.12 E-value=54 Score=20.29 Aligned_cols=14 Identities=0% Similarity=-0.116 Sum_probs=9.1
Q ss_pred CCCCChHHHHHHHH
Q 033107 91 VEKVPLCLLRTQCW 104 (127)
Q Consensus 91 ~~kI~e~~Lk~iL~ 104 (127)
.|.||-+++..++.
T Consensus 22 ~g~i~~~eF~~~~~ 35 (109)
T 1bu3_A 22 ADSFNYKAFFAKVG 35 (109)
T ss_dssp TTCCCHHHHHHHHT
T ss_pred CCcCcHHHHHHHHH
Confidence 45677777776653
No 61
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.07 E-value=32 Score=28.02 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCHHHHHHhchhhccCchhHHHHHHHHHHHHHcCCCCCCCCh
Q 033107 44 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVPL 96 (127)
Q Consensus 44 ee~r~~iL~qiLt~eAreRL~rI~lVKPE~A~~VE~~Liqlaq~Gql~~kI~e 96 (127)
.+.|...+.+++.|=-+=.|.+++-.=-=-...||..|.+|+..|+|.++||-
T Consensus 331 ~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~ 383 (429)
T 4b4t_R 331 REMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDR 383 (429)
T ss_dssp HHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEET
T ss_pred HHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcC
Confidence 34556666777665433223222211001246789999999999999998863
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.95 E-value=89 Score=19.46 Aligned_cols=21 Identities=10% Similarity=-0.132 Sum_probs=16.1
Q ss_pred CCCCCCCChHHHHHHHHHhhh
Q 033107 88 GQIVEKVPLCLLRTQCWMDAQ 108 (127)
Q Consensus 88 Gql~~kI~e~~Lk~iL~~~~q 108 (127)
|.|...+|+++|+..|..++.
T Consensus 15 ~nL~~~~~~~~l~~~l~~~F~ 35 (96)
T 2dgx_A 15 SNIDYRLSRKELQQLLQEAFA 35 (96)
T ss_dssp ESCCTTSCHHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHhcc
Confidence 578889999999966665544
No 63
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=20.86 E-value=1e+02 Score=18.05 Aligned_cols=24 Identities=13% Similarity=-0.188 Sum_probs=13.4
Q ss_pred CCChHHHHHHHHHhhhhhcCCeeE
Q 033107 93 KVPLCLLRTQCWMDAQIISQNIVY 116 (127)
Q Consensus 93 kI~e~~Lk~iL~~~~q~~~~~i~~ 116 (127)
+++++++..++...-..+.|.|.|
T Consensus 42 ~~~~~~~~~~~~~~D~~~dg~i~~ 65 (86)
T 2opo_A 42 SVTPDEVRRMMAEIDTDGDGFISF 65 (86)
T ss_dssp TCCHHHHHHHHHHHCTTCSSEECH
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcH
Confidence 456666666666554444555543
No 64
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=20.69 E-value=1.7e+02 Score=21.42 Aligned_cols=52 Identities=12% Similarity=-0.086 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHcCCCC--CCCChHHHHHHHHHhhh--------hhcCCeeEeecccchh
Q 033107 73 KARGVEDIILRSAQMGQIV--EKVPLCLLRTQCWMDAQ--------IISQNIVYLSDNEIRI 124 (127)
Q Consensus 73 ~A~~VE~~Liqlaq~Gql~--~kI~e~~Lk~iL~~~~q--------~~~~~i~~~~~~~~~~ 124 (127)
.....+..+..+|-.|-+. .++|.++...||..++. +|.+-++-||.+|+.=
T Consensus 130 ~~~~~~~~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l~~~elek 191 (197)
T 3kdg_A 130 IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHHSTYEMEK 191 (197)
T ss_dssp HHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEeCHHHHHH
Confidence 3445677889999999777 58999999999997743 4556788888887643
Done!