Query 033108
Match_columns 127
No_of_seqs 132 out of 855
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cbp_A Cucumber basic protein; 100.0 1.5E-41 5.2E-46 232.4 7.1 96 32-127 1-96 (96)
2 1ws8_A Mavicyanin; oxidized fo 100.0 4.7E-41 1.6E-45 234.7 5.9 98 30-127 1-103 (109)
3 1jer_A Cucumber stellacyanin; 100.0 1.1E-39 3.9E-44 236.1 5.0 98 30-127 2-107 (138)
4 1x9u_A Umecyanin; cupredoxin, 100.0 1.2E-38 4.1E-43 224.7 7.2 95 32-126 2-103 (116)
5 1f56_A Plantacyanin; cupredoxi 100.0 3.5E-38 1.2E-42 213.9 8.2 91 32-127 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.3 1.1E-11 3.7E-16 87.7 7.8 95 28-126 13-138 (140)
7 1bxv_A Plastocyanin; copper pr 99.2 3.6E-11 1.2E-15 78.4 6.6 84 33-127 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.1 8.6E-11 2.9E-15 85.3 6.6 76 52-127 62-154 (154)
9 2aan_A Auracyanin A; cupredoxi 99.0 6.4E-09 2.2E-13 73.3 10.4 94 29-127 16-139 (139)
10 1iuz_A Plastocyanin; electron 98.9 3.2E-09 1.1E-13 70.6 6.7 90 32-127 2-98 (98)
11 1pmy_A Pseudoazurin; electron 98.9 6.1E-09 2.1E-13 73.0 7.2 80 37-127 11-93 (123)
12 2gim_A Plastocyanin; beta shee 98.9 1.3E-08 4.6E-13 67.9 8.6 89 33-127 5-105 (106)
13 1plc_A Plastocyanin; electron 98.8 1.2E-08 4.3E-13 67.5 8.0 89 33-127 2-99 (99)
14 1paz_A Pseudoazurin precursor; 98.8 8.4E-09 2.9E-13 72.3 7.1 80 37-127 11-93 (123)
15 2plt_A Plastocyanin; electron 98.8 6.9E-09 2.4E-13 68.5 5.8 90 32-127 2-98 (98)
16 1kdj_A Plastocyanin; electron 98.8 1.7E-08 6E-13 67.1 7.6 89 33-127 2-102 (102)
17 1b3i_A PETE protein, protein ( 98.8 2.5E-08 8.7E-13 65.7 7.5 87 33-127 4-97 (97)
18 3erx_A Pseudoazurin; copper pr 98.7 1.3E-08 4.4E-13 71.5 5.5 79 37-127 11-93 (123)
19 3ef4_A Pseudoazurin, blue copp 98.7 3.2E-08 1.1E-12 69.7 7.4 80 36-126 10-93 (124)
20 1byp_A Protein (plastocyanin); 98.7 4.3E-08 1.5E-12 64.8 7.6 89 33-127 2-99 (99)
21 3tu6_A Pseudoazurin (blue copp 98.7 3E-08 1E-12 70.0 6.5 81 36-127 11-95 (127)
22 1pcs_A Plastocyanin; electron 98.6 3.3E-07 1.1E-11 60.4 8.7 89 33-127 4-98 (98)
23 3c75_A Amicyanin; copper prote 98.3 1.1E-06 3.7E-11 61.8 5.8 74 41-127 54-132 (132)
24 3cvb_A Plastocyanin; cupredoxi 98.1 2.9E-05 9.8E-10 51.2 8.5 87 33-127 4-104 (105)
25 4hci_A Cupredoxin 1; structura 98.0 4.5E-06 1.5E-10 55.4 4.3 84 28-127 10-100 (100)
26 3ay2_A Lipid modified azurin p 97.9 4.4E-05 1.5E-09 56.1 8.4 90 32-126 43-165 (167)
27 1cuo_A Protein (azurin ISO-2); 97.9 7.5E-05 2.6E-09 52.5 9.3 89 33-126 4-127 (129)
28 2ux6_A Pseudoazurin; type-1 co 97.9 1.7E-05 5.9E-10 55.1 5.3 78 37-127 11-91 (122)
29 2ov0_A Amicyanin; beta-sandwic 97.8 4E-05 1.4E-09 51.3 6.0 82 30-127 17-105 (105)
30 1id2_A Amicyanin; beta barrel, 97.7 8.1E-05 2.8E-09 50.0 6.6 82 32-127 20-106 (106)
31 1nwp_A Azurin; electron transp 97.7 0.00024 8.2E-09 49.8 8.5 90 33-127 4-128 (128)
32 2iaa_C Azurin; quinoprotein, t 97.7 0.00038 1.3E-08 48.8 9.1 89 34-127 4-127 (128)
33 2ccw_A Azurin II, AZN-2; elect 97.6 0.00079 2.7E-08 47.2 10.1 90 33-127 4-128 (129)
34 1iko_P Ephrin-B2; greek KEY, g 97.4 7.6E-05 2.6E-09 55.5 3.0 73 55-127 26-139 (178)
35 2x11_B Ephrin-A5; receptor-sig 97.1 0.00047 1.6E-08 51.2 4.5 96 28-127 28-161 (177)
36 1iby_A Nitrosocyanin; RED copp 96.6 0.0026 8.8E-08 42.5 4.3 65 51-126 38-110 (112)
37 3d12_B Ephrin-B3; beta propell 96.4 0.0044 1.5E-07 44.4 5.0 74 53-126 22-139 (141)
38 1shx_A Ephrin-A5; ephrin signa 96.3 0.0053 1.8E-07 43.8 4.6 75 53-127 23-132 (138)
39 3czu_B Ephrin-A1; ATP-binding, 96.2 0.0059 2E-07 45.5 4.9 95 26-127 24-159 (182)
40 2cua_A Protein (CUA); CUA cent 96.2 0.028 9.4E-07 39.4 8.2 72 41-127 54-134 (135)
41 2wo3_B Ephrin-A2; transferase- 95.8 0.012 4E-07 42.9 4.8 35 53-87 32-77 (157)
42 3fsa_A Azurin; copper, cupredo 95.2 0.22 7.5E-06 34.7 9.3 85 35-127 6-125 (125)
43 2vsm_B Ephrin-B2; developmenta 94.6 0.035 1.2E-06 39.6 4.1 72 55-126 25-137 (140)
44 3s8f_B Cytochrome C oxidase su 92.9 0.54 1.9E-05 34.1 7.9 66 51-126 93-166 (168)
45 2dv6_A Nitrite reductase; elec 91.3 0.25 8.4E-06 40.0 4.9 70 50-126 54-130 (447)
46 3sbq_A Nitrous-oxide reductase 91.2 0.53 1.8E-05 40.8 7.0 64 51-126 558-635 (638)
47 1fwx_A Nitrous oxide reductase 91.2 0.53 1.8E-05 40.5 7.0 65 51-126 513-590 (595)
48 3hei_B Ephrin-A1; EPH receptor 90.8 0.15 5.1E-06 36.0 2.7 35 53-87 22-67 (132)
49 3l6w_A Hemocyanin 1; cupredoxi 65.5 5.6 0.00019 33.5 3.9 74 52-127 412-491 (491)
50 2hzs_I RNA polymerase II media 59.7 0.068 2.3E-06 27.1 -5.4 19 52-70 4-22 (27)
51 1oe1_A Dissimilatory copper-co 56.0 10 0.00036 29.2 3.7 72 52-126 66-150 (336)
52 1fft_B Ubiquinol oxidase; elec 55.8 59 0.002 25.6 8.1 81 34-126 130-224 (315)
53 1mzy_A Copper-containing nitri 54.8 11 0.00038 29.0 3.7 72 52-126 65-150 (333)
54 1kbv_A ANIA, major outer membr 50.9 11 0.00037 29.2 3.1 72 52-126 71-154 (327)
55 1yel_A AT1G16640; CESG, protei 47.4 7.6 0.00026 25.1 1.4 19 50-68 73-91 (104)
56 2k75_A Uncharacterized protein 46.8 9.9 0.00034 24.9 1.9 29 33-64 41-69 (106)
57 4i1k_A B3 domain-containing tr 44.0 7 0.00024 27.3 0.9 26 50-75 112-137 (146)
58 2zoo_A Probable nitrite reduct 42.7 10 0.00035 30.3 1.8 72 52-126 61-144 (442)
59 3iuw_A Activating signal coint 41.7 11 0.00037 24.3 1.4 16 53-68 36-52 (83)
60 2z0t_A Putative uncharacterize 38.6 9.5 0.00032 25.7 0.8 11 53-63 32-42 (109)
61 2l8d_A Lamin-B receptor; DNA b 37.2 48 0.0016 20.4 3.8 46 52-102 7-54 (66)
62 1cyx_A CYOA; electron transpor 37.2 26 0.0009 26.0 3.1 63 52-126 42-114 (205)
63 4he6_A Peptidase family U32; u 36.1 28 0.00096 21.7 2.8 18 51-68 26-43 (89)
64 2bw4_A Copper-containing nitri 34.8 35 0.0012 26.1 3.7 72 52-126 72-156 (340)
65 3gdc_A Multicopper oxidase; be 32.5 65 0.0022 24.2 4.8 85 42-126 57-152 (288)
66 3hb3_B Cytochrome C oxidase su 32.4 35 0.0012 26.7 3.3 27 98-126 232-262 (298)
67 1xne_A Hypothetical protein PF 31.3 12 0.00039 25.4 0.3 12 53-64 33-44 (113)
68 2gsm_B Cytochrome C oxidase su 30.6 40 0.0014 25.7 3.3 27 98-126 214-244 (262)
69 2kbn_A Conserved protein; nucl 30.0 39 0.0013 22.0 2.8 32 32-64 37-70 (109)
70 1v54_B Cytochrome C oxidase po 27.5 39 0.0013 25.2 2.7 26 99-126 184-213 (227)
71 2qcp_X Cation efflux system pr 27.0 26 0.00087 21.9 1.4 16 52-67 51-66 (80)
72 1sdd_A Coagulation factor V; c 25.5 10 0.00034 29.1 -1.0 74 52-126 216-298 (306)
73 2vb2_X Copper protein, cation 25.4 28 0.00096 22.2 1.4 20 48-67 55-74 (88)
74 2dig_A Lamin-B receptor; tudor 24.9 95 0.0032 19.1 3.6 46 52-102 10-57 (68)
75 4doi_A Chalcone--flavonone iso 23.3 77 0.0026 24.1 3.7 17 52-68 152-168 (246)
76 4doo_A Chalcone-flavanone isom 23.3 57 0.0019 23.6 2.9 29 47-75 132-160 (205)
77 1mzy_A Copper-containing nitri 22.7 30 0.001 26.5 1.3 28 99-126 287-316 (333)
78 4dok_A Similarity to chalcone- 22.1 73 0.0025 23.4 3.3 21 52-72 135-155 (208)
79 1oe1_A Dissimilatory copper-co 21.1 33 0.0011 26.3 1.2 28 99-126 287-316 (336)
No 1
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1.5e-41 Score=232.36 Aligned_cols=96 Identities=64% Similarity=1.272 Sum_probs=92.2
Q ss_pred EEEEecCCCCCccccccccCCCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCceeeccCCcEEEecCcceEEEcC
Q 033108 32 TTYTVGDSGGWSFNMASWAKGKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGAKVYSSGKDRIKLVRGQNFFICN 111 (127)
Q Consensus 32 ~~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~~~~~~G~~~v~L~~G~~yFic~ 111 (127)
++|+|||+.||++++++||++++|++||+|+|+|.+++|+|+||++++|++|++++|+..+++|+++|+|++|++||||+
T Consensus 1 ~~~~VG~~~GW~~~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~~g~~yFic~ 80 (96)
T 2cbp_A 1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPKGQSYFICN 80 (96)
T ss_dssp CEEETTGGGCSCSSCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCSEEEEEECC
T ss_pred CEEEECCcCCCccChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEecCCCEEEEcC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999995599999999
Q ss_pred CCCCCCCCCEEEEEeC
Q 033108 112 SAGHCGSGMKIAINAM 127 (127)
Q Consensus 112 ~~~hC~~GmKl~I~V~ 127 (127)
+++||++||||+|+|+
T Consensus 81 ~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 81 FPGHCQSGMKIAVNAL 96 (96)
T ss_dssp STTTGGGTCEEEEEEC
T ss_pred CCCccccCCEEEEEEC
Confidence 9999999999999985
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=4.7e-41 Score=234.73 Aligned_cols=98 Identities=41% Similarity=0.812 Sum_probs=93.0
Q ss_pred ccEEEEecCCCCCccc----cccccCCCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCceeeccCCcEEEec-Cc
Q 033108 30 DATTYTVGDSGGWSFN----MASWAKGKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGAKVYSSGKDRIKLV-RG 104 (127)
Q Consensus 30 ~a~~~~VG~~~gW~~~----~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~~~~~~G~~~v~L~-~G 104 (127)
+|++|+|||+.||+++ +++||++++|++||+|+|+|.++.|+|+||++++|++|+.++|+..+++|+++|+|+ +|
T Consensus 1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G 80 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPG 80 (109)
T ss_dssp CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSE
T ss_pred CCcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCCc
Confidence 3689999999999987 379999999999999999999999999999999999999999999999999999998 59
Q ss_pred ceEEEcCCCCCCCCCCEEEEEeC
Q 033108 105 QNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 105 ~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
++||||++++||++||||+|+|.
T Consensus 81 ~~yFic~~~gHC~~GmKl~I~V~ 103 (109)
T 1ws8_A 81 TFYFLCGIPGHCQLGQKVEIKVD 103 (109)
T ss_dssp EEEEECCSTTTTTTTCEEEEEEC
T ss_pred CEEEECCCCCcccCCCEEEEEEc
Confidence 99999999999999999999984
No 3
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1.1e-39 Score=236.09 Aligned_cols=98 Identities=32% Similarity=0.690 Sum_probs=93.2
Q ss_pred ccEEEEecCCCCCccc-----cccccCCCeEEeCCEEEEEeCCCCCeEEEE-cccCcCCCCCCCCceeeccCCcEEEe-c
Q 033108 30 DATTYTVGDSGGWSFN-----MASWAKGKRFKAGDTLVFNYDPTLHNVVAV-NRAGYRSCTAPGGAKVYSSGKDRIKL-V 102 (127)
Q Consensus 30 ~a~~~~VG~~~gW~~~-----~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v-~~~~Y~~C~~~~~~~~~~~G~~~v~L-~ 102 (127)
+|++|+|||+.||+++ +++|+++++|++||+|+|+|.++.|+|+|| ++++|++|+.++++..+++|+++|+| +
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~ 81 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD 81 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEecc
Confidence 5789999999999998 479999999999999999999999999999 99999999999999999999999999 8
Q ss_pred C-cceEEEcCCCCCCCCCCEEEEEeC
Q 033108 103 R-GQNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 103 ~-G~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
+ |++||||++++||++||||+|+|.
T Consensus 82 ~~G~~YFicg~~gHC~~GmKl~I~V~ 107 (138)
T 1jer_A 82 ELGMHYFVCTVGTHCSNGQKLSINVV 107 (138)
T ss_dssp SSEEEEEECCSTTTGGGTCEEEEEEE
T ss_pred CCcCEEEEcCCCCccccCCEEEEEEc
Confidence 4 999999999999999999999983
No 4
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=1.2e-38 Score=224.71 Aligned_cols=95 Identities=28% Similarity=0.663 Sum_probs=90.2
Q ss_pred EEEEecCCCCCccc-----cccccCCCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCceeeccCCcEEEecC-cc
Q 033108 32 TTYTVGDSGGWSFN-----MASWAKGKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGAKVYSSGKDRIKLVR-GQ 105 (127)
Q Consensus 32 ~~~~VG~~~gW~~~-----~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~~~~~~G~~~v~L~~-G~ 105 (127)
++|+|||+.||+++ +++||++++|++||+|+|+|.+++|+|+||++++|++|+.++|+..+++|++.|+|++ |+
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~ 81 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGP 81 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCEE
T ss_pred eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCCC
Confidence 57999999999975 4799999999999999999999999999999999999999999999999999999995 99
Q ss_pred eEEEcCCCCCCCCCCEEEE-Ee
Q 033108 106 NFFICNSAGHCGSGMKIAI-NA 126 (127)
Q Consensus 106 ~yFic~~~~hC~~GmKl~I-~V 126 (127)
+||||++++||++||||+| +|
T Consensus 82 ~yFic~~~~HC~~Gmkl~In~V 103 (116)
T 1x9u_A 82 QYYICTVGDHCRVGQKLSINVV 103 (116)
T ss_dssp EEEECCSTTTTTTTCEEEEEEE
T ss_pred EEEECCCCCccccCCEEEEEEE
Confidence 9999999999999999999 66
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=3.5e-38 Score=213.87 Aligned_cols=91 Identities=66% Similarity=1.157 Sum_probs=87.2
Q ss_pred EEEEecCCCCCccccccccCCCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCceeeccCCcEEEecCcceEEEcC
Q 033108 32 TTYTVGDSGGWSFNMASWAKGKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGAKVYSSGKDRIKLVRGQNFFICN 111 (127)
Q Consensus 32 ~~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~~~~~~G~~~v~L~~G~~yFic~ 111 (127)
++|+| ||+++ ++||++++|++||+|+|+|.+++|+|+||++++|++|++++|+..+++|++.|+|++|++||||+
T Consensus 1 ~~y~V----gW~~~-~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~~g~~yFic~ 75 (91)
T 1f56_A 1 AVYNI----GWSFN-VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTRGQNYFICS 75 (91)
T ss_dssp CEEEE----ECSSS-CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECCSEEEEEECC
T ss_pred CEEEE----eCCCC-CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeCCCCeEEEcC
Confidence 36889 89999 99999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCCCCCCCEEEEEeC
Q 033108 112 SAGHCGSGMKIAINAM 127 (127)
Q Consensus 112 ~~~hC~~GmKl~I~V~ 127 (127)
+++||++||||+|+|.
T Consensus 76 ~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 76 FPGHCGGGMKIAINAK 91 (91)
T ss_dssp STTTTTTTCEEEEEEC
T ss_pred CCCccccCCEEEEEEC
Confidence 9999999999999985
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.28 E-value=1.1e-11 Score=87.68 Aligned_cols=95 Identities=21% Similarity=0.333 Sum_probs=63.8
Q ss_pred ccccEEEEecCC-CCCccccccccCCCeEEeCCEEEEEeCC-----CCCeEEEEccc-CcCC--------------C---
Q 033108 28 IVDATTYTVGDS-GGWSFNMASWAKGKRFKAGDTLVFNYDP-----TLHNVVAVNRA-GYRS--------------C--- 83 (127)
Q Consensus 28 ~a~a~~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-----~~h~V~~v~~~-~Y~~--------------C--- 83 (127)
.+.+.++.|+-. .+|.+.| +..+++.||+++|.+.+ ..|++...+.. ++.. .
T Consensus 13 ~~~~~~v~V~~~~~~~~F~P----~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (140)
T 1qhq_A 13 ETPAQTVEVRAAPDALAFAQ----TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPP 88 (140)
T ss_dssp SCCSEEEEEEBCSSSSSBSC----SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCT
T ss_pred cCCCEEEEEEEeCCCceEeC----CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCcc
Confidence 344567777653 4588876 45899999999988865 48999887422 1111 1
Q ss_pred CCCCCc---eeeccC---CcEEEec-CcceEEEcCCCCCCCCCCEEEEEe
Q 033108 84 TAPGGA---KVYSSG---KDRIKLV-RGQNFFICNSAGHCGSGMKIAINA 126 (127)
Q Consensus 84 ~~~~~~---~~~~~G---~~~v~L~-~G~~yFic~~~~hC~~GmKl~I~V 126 (127)
+..+.. .....| ..+|+++ +|.|||+|++++||..|||..|+|
T Consensus 89 ~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V 138 (140)
T 1qhq_A 89 DTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTV 138 (140)
T ss_dssp TCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEE
T ss_pred ccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEE
Confidence 000000 112333 3356776 699999999999999999999987
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.20 E-value=3.6e-11 Score=78.44 Aligned_cols=84 Identities=24% Similarity=0.356 Sum_probs=59.9
Q ss_pred EEEecCC-CCCccccccccCCCeEEeCCEEEEEeCC-CCCeEEEEcccCcCCCCCCCCceeeccC-CcEEEec-CcceEE
Q 033108 33 TYTVGDS-GGWSFNMASWAKGKRFKAGDTLVFNYDP-TLHNVVAVNRAGYRSCTAPGGAKVYSSG-KDRIKLV-RGQNFF 108 (127)
Q Consensus 33 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~v~~~~Y~~C~~~~~~~~~~~G-~~~v~L~-~G~~yF 108 (127)
+..+|++ .+|.+.| +..++++||+|+|.+.. ..|+|...+...+. ........| ...++++ ||+|+|
T Consensus 4 ~v~~~~~~~~~~f~P----~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~~~G~y~~ 74 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP----STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFSEPGTYTY 74 (91)
T ss_dssp EEEESCTTSCSSEES----SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECCSCEEEEE
T ss_pred EEEEecCCCccEEeC----CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeCCCEEEEE
Confidence 4566753 5677776 34799999999999875 68999875432221 011223344 3467777 699999
Q ss_pred EcCCCCCCCCCCEEEEEeC
Q 033108 109 ICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 109 ic~~~~hC~~GmKl~I~V~ 127 (127)
+|. .||..||+..|.|.
T Consensus 75 ~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 75 YCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp ECT--TTGGGTCEEEEEEC
T ss_pred EeC--CCccCCCEEEEEEC
Confidence 999 79999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.13 E-value=8.6e-11 Score=85.31 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=57.1
Q ss_pred CCeEEeCCEEEEEeCCC----CCeEEEEc-ccCcCCCCCCCCceee-------ccC---CcEE--EecCcceEEEcCCCC
Q 033108 52 GKRFKAGDTLVFNYDPT----LHNVVAVN-RAGYRSCTAPGGAKVY-------SSG---KDRI--KLVRGQNFFICNSAG 114 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~----~h~V~~v~-~~~Y~~C~~~~~~~~~-------~~G---~~~v--~L~~G~~yFic~~~~ 114 (127)
..++++||+|+|.+.+. .|++..++ ...|+.|....++..+ ..| ..++ ++.||+|||+|+.++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~~pGtY~y~C~~~g 141 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPG 141 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECCCSEEEEEECCSTT
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEECCceEEEECCCCC
Confidence 47889999999999642 69999984 5678778765443211 233 3334 453599999999999
Q ss_pred CCCCCCEEEEEeC
Q 033108 115 HCGSGMKIAINAM 127 (127)
Q Consensus 115 hC~~GmKl~I~V~ 127 (127)
||+.||+..|.|.
T Consensus 142 H~~~GM~G~IiV~ 154 (154)
T 2cal_A 142 MAATGMFGKIVVK 154 (154)
T ss_dssp TGGGTCEEEEEEC
T ss_pred HHHCCCEEEEEEC
Confidence 9999999999884
No 9
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.96 E-value=6.4e-09 Score=73.30 Aligned_cols=94 Identities=17% Similarity=0.308 Sum_probs=63.9
Q ss_pred cccEEEEecC-CCCCccccccccCCCeEEeCCEEEEEeCCC----CCeEEEEccc------------------CcCCCCC
Q 033108 29 VDATTYTVGD-SGGWSFNMASWAKGKRFKAGDTLVFNYDPT----LHNVVAVNRA------------------GYRSCTA 85 (127)
Q Consensus 29 a~a~~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~----~h~V~~v~~~------------------~Y~~C~~ 85 (127)
++..++.||. ..++.+.| +..++++||+++|.+.+. .|++...+.. +|..+..
T Consensus 16 ~~~~~V~v~~~~~~~~F~p----~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 91 (139)
T 2aan_A 16 SGPVTIEIGSKGEELAFDK----TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADK 91 (139)
T ss_dssp -CCEEEEEEBCTTSSSBSC----SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCC
T ss_pred CcCEEEEEEecCCccEEcC----CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCccc
Confidence 4455677742 34677765 357899999999887643 6999987532 5666653
Q ss_pred CCCc---eeeccCC-cEEEec---CcceEEEcCCCCCCCCCCEEEEEeC
Q 033108 86 PGGA---KVYSSGK-DRIKLV---RGQNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 86 ~~~~---~~~~~G~-~~v~L~---~G~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
.+.. .....|. ..++++ ||.|+|+|.+++||. ||+-.|.|.
T Consensus 92 ~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 92 SNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 3211 1233443 345543 699999999999999 999999884
No 10
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.91 E-value=3.2e-09 Score=70.61 Aligned_cols=90 Identities=26% Similarity=0.358 Sum_probs=60.0
Q ss_pred EEEEecC-CCCCccccccccCCCeEEeCCEEEEEeCC-CCCeEEEEcc---cCcCCCCCCCCceeeccCCc-EEEec-Cc
Q 033108 32 TTYTVGD-SGGWSFNMASWAKGKRFKAGDTLVFNYDP-TLHNVVAVNR---AGYRSCTAPGGAKVYSSGKD-RIKLV-RG 104 (127)
Q Consensus 32 ~~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~v~~---~~Y~~C~~~~~~~~~~~G~~-~v~L~-~G 104 (127)
.+..+|+ +.++.+.| +..++++||++.|.+.. ..|+|...+. ++++.+..+........|.+ +++++ +|
T Consensus 2 ~~V~m~~~~~~~~F~P----~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~~G 77 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVP----SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTPG 77 (98)
T ss_dssp EEEEESCTTSCCSEES----SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCSCE
T ss_pred EEEEEecCCCCcEEeC----CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEcCCCE
Confidence 3455654 45677776 35899999999999876 4899987531 12222211100012344443 67777 59
Q ss_pred ceEEEcCCCCCCCCCCEEEEEeC
Q 033108 105 QNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 105 ~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
.|+|+|.. ||+.||+..|.|.
T Consensus 78 ~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 78 VYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp EEEEECTT--TGGGTCEEEEEEC
T ss_pred EEEEEchh--hccCCCEEEEEEC
Confidence 99999995 9999999999884
No 11
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.86 E-value=6.1e-09 Score=73.00 Aligned_cols=80 Identities=25% Similarity=0.313 Sum_probs=55.7
Q ss_pred cCCCCCccccccccCCCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCce-eeccCC-cEEEec-CcceEEEcCCC
Q 033108 37 GDSGGWSFNMASWAKGKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGAK-VYSSGK-DRIKLV-RGQNFFICNSA 113 (127)
Q Consensus 37 G~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~~-~~~~G~-~~v~L~-~G~~yFic~~~ 113 (127)
|++.++.+.| +..++++||+|+|.+....|+|...+ .|.+..... ....|. .+++++ +|.|+|+|+
T Consensus 11 g~~g~~~F~P----~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~-- 79 (123)
T 1pmy_A 11 GPGGMMVFDP----ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA-- 79 (123)
T ss_dssp ETTEEEEEES----SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--
T ss_pred cCCCCceEeC----CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--
Confidence 5444566665 35899999999999987789998752 222221111 112233 367787 599999998
Q ss_pred CCCCCCCEEEEEeC
Q 033108 114 GHCGSGMKIAINAM 127 (127)
Q Consensus 114 ~hC~~GmKl~I~V~ 127 (127)
.||..||+..|+|.
T Consensus 80 ~H~~~gM~G~I~V~ 93 (123)
T 1pmy_A 80 PHYMMGMVALVVVG 93 (123)
T ss_dssp TTTTTTCEEEEEES
T ss_pred CccccCCEEEEEEc
Confidence 49999999999983
No 12
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.86 E-value=1.3e-08 Score=67.95 Aligned_cols=89 Identities=26% Similarity=0.326 Sum_probs=58.5
Q ss_pred EEEecCC-CCCccccccccCCCeEEeCCEEEEEeCC-CCCeEEEEcccCcC-----CCCCCCCceeeccC-CcEEEe---
Q 033108 33 TYTVGDS-GGWSFNMASWAKGKRFKAGDTLVFNYDP-TLHNVVAVNRAGYR-----SCTAPGGAKVYSSG-KDRIKL--- 101 (127)
Q Consensus 33 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~v~~~~Y~-----~C~~~~~~~~~~~G-~~~v~L--- 101 (127)
+..+|.+ .++.+.| +..++++||+++|.+.. ..|++...+....+ .............| ...+++
T Consensus 5 ~V~~~~~~~~~~F~P----~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~~~~f~~~ 80 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP----AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTSTTFPAD 80 (106)
T ss_dssp EEEESCTTCCSSEES----SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEEEEECCTT
T ss_pred EEEEEecCCcceEcC----CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCCEEEEEEecC
Confidence 4567643 5788876 34789999999999875 58999865322100 00000001122334 346777
Q ss_pred c-CcceEEEcCCCCCCCCCCEEEEEeC
Q 033108 102 V-RGQNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 102 ~-~G~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
+ ||.|+|+|. .||+.||+..|+|.
T Consensus 81 ~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 81 APAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp CCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 5 599999999 79999999999884
No 13
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.85 E-value=1.2e-08 Score=67.54 Aligned_cols=89 Identities=21% Similarity=0.380 Sum_probs=59.0
Q ss_pred EEEecC-CCCCccccccccCCCeEEeCCEEEEEeCCC-CCeEEEEccc---CcCCCCCC--CCceeeccCC-cEEEec-C
Q 033108 33 TYTVGD-SGGWSFNMASWAKGKRFKAGDTLVFNYDPT-LHNVVAVNRA---GYRSCTAP--GGAKVYSSGK-DRIKLV-R 103 (127)
Q Consensus 33 ~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~v~~~---~Y~~C~~~--~~~~~~~~G~-~~v~L~-~ 103 (127)
+..+|+ +.+..+.| +..++++||+|+|.+... .|++...+.. +.+.+... ........|. ..++++ |
T Consensus 2 ~v~m~~~~~~~~F~P----~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~tf~~~ 77 (99)
T 1plc_A 2 DVLLGADDGSLAFVP----SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNK 77 (99)
T ss_dssp EEEESCTTCCSCEES----SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEECCSC
T ss_pred EEEEecCCCcceEeC----CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEEEEECCC
Confidence 345665 35577765 358999999999998764 8999876421 12211100 0001233343 367777 5
Q ss_pred cceEEEcCCCCCCCCCCEEEEEeC
Q 033108 104 GQNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 104 G~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
|+|+|+|. .||+.||+..|+|.
T Consensus 78 G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 78 GEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EEEEEECG--GGTTTTCEEEEEEC
T ss_pred ceEEEEcC--CCcccCCEEEEEEC
Confidence 99999999 79999999999984
No 14
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.83 E-value=8.4e-09 Score=72.29 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=55.3
Q ss_pred cCCCCCccccccccCCCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCce-eeccCC-cEEEec-CcceEEEcCCC
Q 033108 37 GDSGGWSFNMASWAKGKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGAK-VYSSGK-DRIKLV-RGQNFFICNSA 113 (127)
Q Consensus 37 G~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~~-~~~~G~-~~v~L~-~G~~yFic~~~ 113 (127)
|++.++.+.| +..++++||++.|.+....|+|.... .|.+..... ....|. .+++++ +|.|+|+|+
T Consensus 11 g~~g~~~F~P----~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~-- 79 (123)
T 1paz_A 11 GAEGAMVFEP----AYIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT-- 79 (123)
T ss_dssp ETTEEEEEES----SEEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT--
T ss_pred cCCCCceEeC----CEEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEEEEeC--
Confidence 5544566665 35899999999999987789998641 222221111 111232 367787 599999998
Q ss_pred CCCCCCCEEEEEeC
Q 033108 114 GHCGSGMKIAINAM 127 (127)
Q Consensus 114 ~hC~~GmKl~I~V~ 127 (127)
.||..||+..|+|.
T Consensus 80 ~H~~~gM~G~I~V~ 93 (123)
T 1paz_A 80 PHYAMGMIALIAVG 93 (123)
T ss_dssp TTGGGTCEEEEEES
T ss_pred CcccCCCEEEEEEc
Confidence 49999999999983
No 15
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.81 E-value=6.9e-09 Score=68.47 Aligned_cols=90 Identities=27% Similarity=0.383 Sum_probs=59.5
Q ss_pred EEEEecC-CCCCccccccccCCCeEEeCCEEEEEeCCC-CCeEEEEcc---cCcCCCCCCCCceeeccCC-cEEEec-Cc
Q 033108 32 TTYTVGD-SGGWSFNMASWAKGKRFKAGDTLVFNYDPT-LHNVVAVNR---AGYRSCTAPGGAKVYSSGK-DRIKLV-RG 104 (127)
Q Consensus 32 ~~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~v~~---~~Y~~C~~~~~~~~~~~G~-~~v~L~-~G 104 (127)
.+..+|+ +.++.+.| +..++++||+++|.+... .|++...+. ++++.+...........|. .+++++ ||
T Consensus 2 ~~V~m~~~~~~~~F~P----~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~~~G 77 (98)
T 2plt_A 2 ATVKLGADSGALEFVP----KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTAAG 77 (98)
T ss_dssp EEEEESCTTCCSSEES----SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECCSCE
T ss_pred EEEEEecCCCCceEeC----CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeCCCe
Confidence 3566664 45677766 347899999999998764 899987532 1222111110011233443 366777 59
Q ss_pred ceEEEcCCCCCCCCCCEEEEEeC
Q 033108 105 QNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 105 ~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
+|+|+|. .||+.||+..|.|.
T Consensus 78 ~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 78 EYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EEEEECG--GGGGGTCEEEEEEC
T ss_pred EEEEEcC--CccccCCeEEEEEC
Confidence 9999999 69999999999884
No 16
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.81 E-value=1.7e-08 Score=67.07 Aligned_cols=89 Identities=25% Similarity=0.295 Sum_probs=58.8
Q ss_pred EEEecC-CCCCccccccccCCCeEEeCCEEEEEeCC-CCCeEEEEcccCcC----CCCCCC----CceeeccCC-cEEEe
Q 033108 33 TYTVGD-SGGWSFNMASWAKGKRFKAGDTLVFNYDP-TLHNVVAVNRAGYR----SCTAPG----GAKVYSSGK-DRIKL 101 (127)
Q Consensus 33 ~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~v~~~~Y~----~C~~~~----~~~~~~~G~-~~v~L 101 (127)
+..+|. +.++.+.| +..++++||+++|.+.. ..|++...+.++.+ .++... .......|. ..+++
T Consensus 2 ~V~~g~~~~~~~F~P----~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf 77 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYP----DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKV 77 (102)
T ss_dssp EEEESCTTCCCCEES----SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECC
T ss_pred EEEEecCCCccEEeC----CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCCEEEEEe
Confidence 355675 35567665 34799999999999875 48999875433321 111000 011233343 35667
Q ss_pred c-CcceEEEcCCCCCCCCCCEEEEEeC
Q 033108 102 V-RGQNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 102 ~-~G~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
+ ||+|+|+|. .||+.||+..|.|.
T Consensus 78 ~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 78 STPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp CSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred CCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 6 599999999 79999999999984
No 17
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.77 E-value=2.5e-08 Score=65.69 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=58.1
Q ss_pred EEEecC-CCCCccccccccCCCeEEeCCEEEEEeCC-CCCeEEEEcccC---cCCCCCCCCceeeccC-CcEEEec-Ccc
Q 033108 33 TYTVGD-SGGWSFNMASWAKGKRFKAGDTLVFNYDP-TLHNVVAVNRAG---YRSCTAPGGAKVYSSG-KDRIKLV-RGQ 105 (127)
Q Consensus 33 ~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~v~~~~---Y~~C~~~~~~~~~~~G-~~~v~L~-~G~ 105 (127)
+..+|+ +.++.+.| +..++++||+++|.+.. ..|++...+... .+.+... . .....| ...++++ ||.
T Consensus 4 ~V~~~~~~~~~~F~P----~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~-~-~~~~~g~~~~~tf~~~G~ 77 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEP----KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNT-K-LAIAPGSFYSVTLGTPGT 77 (97)
T ss_dssp EEEEEETTTEEEEES----SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBC-C-CCCSCSCCEEEECCSCSE
T ss_pred EEEEeccCCccEEeC----CEEEECCCCEEEEEECCCCCeEEEEeCCCCcccccccccc-c-eecCCCCEEEEEeCCCeE
Confidence 455654 35566665 34799999999999876 489998764321 1011111 1 122333 3467777 699
Q ss_pred eEEEcCCCCCCCCCCEEEEEeC
Q 033108 106 NFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 106 ~yFic~~~~hC~~GmKl~I~V~ 127 (127)
|+|+|. .||+.||+..|.|.
T Consensus 78 y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 78 YSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp EEEECS--STTTTTCEEEEEEC
T ss_pred EEEEcc--ChhhcCCEEEEEEC
Confidence 999999 79999999999884
No 18
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.74 E-value=1.3e-08 Score=71.47 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=55.4
Q ss_pred cCCCCCccccccccCCCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCceee--ccC-CcEEEec-CcceEEEcCC
Q 033108 37 GDSGGWSFNMASWAKGKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGAKVY--SSG-KDRIKLV-RGQNFFICNS 112 (127)
Q Consensus 37 G~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~~~~--~~G-~~~v~L~-~G~~yFic~~ 112 (127)
|++....+.| +..++++||+++|.+....|+|...+. +.+.+. ..+ ..| ..+++++ ||.|+|+|.
T Consensus 11 g~~G~~~F~P----~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~-~~f~~~pg~t~s~TF~~pG~y~y~C~- 79 (123)
T 3erx_A 11 GESGAMVFEP----AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGV-ESFKSKINESYTLTVTEPGLYGVKCT- 79 (123)
T ss_dssp ETTEEEEEES----SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTC-CCCBCCTTCCEEEEECSCEEEEEECG-
T ss_pred CCCCcEeEeC----CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCc-cceecCCCCEEEEEeCCCeEEEEEeC-
Confidence 3333466665 458999999999999877899987421 222211 111 122 3467787 599999999
Q ss_pred CCCCCCCCEEEEEeC
Q 033108 113 AGHCGSGMKIAINAM 127 (127)
Q Consensus 113 ~~hC~~GmKl~I~V~ 127 (127)
.||..||+-.|+|.
T Consensus 80 -~H~~~GM~G~I~V~ 93 (123)
T 3erx_A 80 -PHFGMGMVGLVQVG 93 (123)
T ss_dssp -GGTTTTCEEEEEES
T ss_pred -CCCcCCcEEEEEEC
Confidence 69999999999883
No 19
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.73 E-value=3.2e-08 Score=69.72 Aligned_cols=80 Identities=25% Similarity=0.278 Sum_probs=57.1
Q ss_pred ecCCC-CCccccccccCCCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCc-eeeccCC-cEEEec-CcceEEEcC
Q 033108 36 VGDSG-GWSFNMASWAKGKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGA-KVYSSGK-DRIKLV-RGQNFFICN 111 (127)
Q Consensus 36 VG~~~-gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~-~~~~~G~-~~v~L~-~G~~yFic~ 111 (127)
+|++. ++.+.| +..++++||++.|.+....|+|...+. +.+.+.. .....|. .+++++ +|.|.|+|.
T Consensus 10 ~g~~G~~~~F~P----~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~ 80 (124)
T 3ef4_A 10 KDDAGNTMVFQP----GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA 80 (124)
T ss_dssp ECTTSCEEEEES----SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEECT
T ss_pred cCCCCceeEEeC----CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEEcC
Confidence 45443 488877 458999999999999888999987532 2222211 1112233 467887 599999998
Q ss_pred CCCCCCCCCEEEEEe
Q 033108 112 SAGHCGSGMKIAINA 126 (127)
Q Consensus 112 ~~~hC~~GmKl~I~V 126 (127)
.||..||+-.|+|
T Consensus 81 --~H~~~GM~G~I~V 93 (124)
T 3ef4_A 81 --PHYGMGMVVLVQV 93 (124)
T ss_dssp --TTGGGTCEEEEEE
T ss_pred --CCCcCCCEEEEEE
Confidence 5999999999988
No 20
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.73 E-value=4.3e-08 Score=64.78 Aligned_cols=89 Identities=21% Similarity=0.388 Sum_probs=59.0
Q ss_pred EEEecC-CCCCccccccccCCCeEEeCCEEEEEeCCC-CCeEEEEcc---cCcCCCCCC--CCceeeccCC-cEEEec-C
Q 033108 33 TYTVGD-SGGWSFNMASWAKGKRFKAGDTLVFNYDPT-LHNVVAVNR---AGYRSCTAP--GGAKVYSSGK-DRIKLV-R 103 (127)
Q Consensus 33 ~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~v~~---~~Y~~C~~~--~~~~~~~~G~-~~v~L~-~ 103 (127)
++.+|+ +.+..+.| +..++++||+++|.+... .|++...+. ++++.+... ........|. ..++++ |
T Consensus 2 ~V~~~~~~~~~~F~P----~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~~~ 77 (99)
T 1byp_A 2 EVLLGSSDGGLAFVP----SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEK 77 (99)
T ss_dssp EEEESCTTSCCSEES----SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECSC
T ss_pred EEEEecCCCcceEeC----CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeCCC
Confidence 355664 45677766 347899999999998764 899987542 122222110 0011233443 367777 5
Q ss_pred cceEEEcCCCCCCCCCCEEEEEeC
Q 033108 104 GQNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 104 G~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
|.|.|+|. .||+.||+..|+|.
T Consensus 78 G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 78 GTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp EEEEEECG--GGTTTTCEEEEEEC
T ss_pred cEEEEEcC--CccccCCEEEEEEC
Confidence 99999999 79999999999884
No 21
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.70 E-value=3e-08 Score=70.00 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=56.6
Q ss_pred ecCCC-CCccccccccCCCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCce-eeccC-CcEEEec-CcceEEEcC
Q 033108 36 VGDSG-GWSFNMASWAKGKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGAK-VYSSG-KDRIKLV-RGQNFFICN 111 (127)
Q Consensus 36 VG~~~-gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~~-~~~~G-~~~v~L~-~G~~yFic~ 111 (127)
+|.+. +..+.| +..++++||++.|.+....|+|...+. +.+..... ....| ..+++++ ||.|+|+|.
T Consensus 11 ~g~~g~~~~F~P----~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~ 81 (127)
T 3tu6_A 11 KAADGRVMAFEP----AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA 81 (127)
T ss_dssp ECTTSCEEEEES----SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT
T ss_pred cCCCCcccEEeC----CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC
Confidence 46544 466766 458999999999999877899987532 11111110 11123 3478888 599999999
Q ss_pred CCCCCCCCCEEEEEeC
Q 033108 112 SAGHCGSGMKIAINAM 127 (127)
Q Consensus 112 ~~~hC~~GmKl~I~V~ 127 (127)
.||..||+-.|.|.
T Consensus 82 --~H~~~GM~G~I~V~ 95 (127)
T 3tu6_A 82 --PHVGMGMIGAIVVG 95 (127)
T ss_dssp --TTGGGTCEEEEEES
T ss_pred --CCCcCCcEEEEEEC
Confidence 59999999999883
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.59 E-value=3.3e-07 Score=60.36 Aligned_cols=89 Identities=19% Similarity=0.307 Sum_probs=57.5
Q ss_pred EEEecCC-CCCccccccccCCCeEEeCCEEEEEeCC-CCCeEEEEcccC--cCCCCCCCCceeeccCC-cEEEec-Ccce
Q 033108 33 TYTVGDS-GGWSFNMASWAKGKRFKAGDTLVFNYDP-TLHNVVAVNRAG--YRSCTAPGGAKVYSSGK-DRIKLV-RGQN 106 (127)
Q Consensus 33 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~v~~~~--Y~~C~~~~~~~~~~~G~-~~v~L~-~G~~ 106 (127)
+..+|.+ .++.+.| +..++++||+++|.+.. ..|++...+... -+.............|. ..++++ ||+|
T Consensus 4 ~V~~~~~~~~~~F~P----~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~~G~y 79 (98)
T 1pcs_A 4 TVKMGSDSGALVFEP----STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPGTY 79 (98)
T ss_dssp EEEESCTTSCSSEES----SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSCEEE
T ss_pred EEEEecCCCccEEeC----CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCCCeEE
Confidence 4566643 5677766 34799999999999875 489988753210 00000000011223343 356777 5999
Q ss_pred EEEcCCCCCCCCCCEEEEEeC
Q 033108 107 FFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 107 yFic~~~~hC~~GmKl~I~V~ 127 (127)
+|+|. .||+.||+..|.|.
T Consensus 80 ~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 80 TYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEECG--GGTTTTCEEEEEEC
T ss_pred EEEcC--CccccCCeEEEEEC
Confidence 99999 69999999999884
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.30 E-value=1.1e-06 Score=61.79 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=49.4
Q ss_pred CCccccccccCCCeEEeCCEEEEEeCCC-CCeEEEEcccCcCCCCCCCCc--eeeccCC-cEEEec-CcceEEEcCCCCC
Q 033108 41 GWSFNMASWAKGKRFKAGDTLVFNYDPT-LHNVVAVNRAGYRSCTAPGGA--KVYSSGK-DRIKLV-RGQNFFICNSAGH 115 (127)
Q Consensus 41 gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~v~~~~Y~~C~~~~~~--~~~~~G~-~~v~L~-~G~~yFic~~~~h 115 (127)
++.+.| +..++++||++.|..... .|++...+... ..... .....|. ..++++ +|+|.|+|.. |
T Consensus 54 ~~~F~P----~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~-----g~~~~~s~~l~pG~t~~~tF~~~G~y~y~C~~--H 122 (132)
T 3c75_A 54 KMKYLT----PEVTIKAGETVYWVNGEVMPHNVAFKKGIV-----GEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP--H 122 (132)
T ss_dssp TTEESS----SEEEECTTCEEEEEECSSSCBCCEECTTTS-----SSSCEECCCBCTTEEEEEEECSCEEEEEECSS--C
T ss_pred eeEEeC----CEEEECCCCEEEEEECCCCceEEEEeCCCC-----CcccccccccCCCCEEEEEcCCCEEEEEEeCC--C
Confidence 466655 457899999999997654 79998753221 00000 1122333 356677 5999999997 7
Q ss_pred CCCCCEEEEEeC
Q 033108 116 CGSGMKIAINAM 127 (127)
Q Consensus 116 C~~GmKl~I~V~ 127 (127)
. ||+..|.|.
T Consensus 123 ~--gM~G~I~V~ 132 (132)
T 3c75_A 123 P--FMRGKVIVE 132 (132)
T ss_dssp T--TCEEEEEEC
T ss_pred c--CCEEEEEEC
Confidence 5 999999884
No 24
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.05 E-value=2.9e-05 Score=51.18 Aligned_cols=87 Identities=22% Similarity=0.380 Sum_probs=56.0
Q ss_pred EEEecCC-CCCccccccccCCCeEEeCCEEEEEeCC-CCCeEEEEcccCcCCCCC-------CCCceeeccCC-cEEEe-
Q 033108 33 TYTVGDS-GGWSFNMASWAKGKRFKAGDTLVFNYDP-TLHNVVAVNRAGYRSCTA-------PGGAKVYSSGK-DRIKL- 101 (127)
Q Consensus 33 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~v~~~~Y~~C~~-------~~~~~~~~~G~-~~v~L- 101 (127)
+..+|.+ .+..+.+ ...++++||+++|.... ..|++..-... ..+.. .........|. ..+++
T Consensus 4 ~V~~~~~~~~~~f~p----~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~~~i~pG~~~~~~f~ 77 (105)
T 3cvb_A 4 TVKMGADSGLFQFEP----ANVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQLMFSPGESYEITFS 77 (105)
T ss_dssp EEEESCTTCCSCEES----SEEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEEEECSTTCEEEEEEC
T ss_pred EEEEeecCCccEEeC----CEEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccccccCCCCeEEEEEe
Confidence 4567643 5677765 34789999999998764 47998864221 11100 00001223343 35666
Q ss_pred --c-CcceEEEcCCCCCCCCCCEEEEEeC
Q 033108 102 --V-RGQNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 102 --~-~G~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
+ +|+|+|.|. .|+..||+-.|.|.
T Consensus 78 ~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 78 SDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp TTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred cCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 5 599999999 69999999999884
No 25
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.04 E-value=4.5e-06 Score=55.42 Aligned_cols=84 Identities=21% Similarity=0.201 Sum_probs=50.2
Q ss_pred ccccEEEEecCCCCCccccccccCCCeEEeCCEEEEEeCC---CCCeEEEEcccCcCCCCCCCCceeeccCC-cEEEe--
Q 033108 28 IVDATTYTVGDSGGWSFNMASWAKGKRFKAGDTLVFNYDP---TLHNVVAVNRAGYRSCTAPGGAKVYSSGK-DRIKL-- 101 (127)
Q Consensus 28 ~a~a~~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~---~~h~V~~v~~~~Y~~C~~~~~~~~~~~G~-~~v~L-- 101 (127)
.+.++++.|-- ..+.+.| +..++++||++.|.+.+ ..|++..-+ ... ......|. ..+.+
T Consensus 10 ~a~~~~v~V~~-~~~~F~P----~~i~v~~G~tV~~~~~n~d~~~H~~~~~~-~~~--------~~~~~pg~~~~~~~t~ 75 (100)
T 4hci_A 10 IASAKVIEVEL-NDDYFNP----NVITIPINESTTLLLKNKGKSEHTFTIKK-LGI--------DVVVESGKEKNITVKP 75 (100)
T ss_dssp ----CCEEEEE-ETTEEES----SEEEECTTSCEEEEEEECSSSCEEEEEGG-GTE--------EEEECTTCEEEEEECC
T ss_pred CCCCcEEEEEE-ECCEEeC----CEEEECCCCEEEEEEEcCCCceEEEEEec-CCc--------ceeecCCcceeEEEec
Confidence 34455554422 1345555 45899999999998753 357776421 110 11223333 23444
Q ss_pred c-CcceEEEcCCCCCCCCCCEEEEEeC
Q 033108 102 V-RGQNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 102 ~-~G~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
+ ||.|.|+|. .||..||+-.|.|.
T Consensus 76 ~~~G~Y~y~C~--~H~~~gM~G~i~Ve 100 (100)
T 4hci_A 76 KSAGTYELICR--YHLLKGMEGKVIVK 100 (100)
T ss_dssp CSCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred ccCceEEEECc--cccCCCCEEEEEEC
Confidence 4 599999997 59999999999984
No 26
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.94 E-value=4.4e-05 Score=56.14 Aligned_cols=90 Identities=23% Similarity=0.314 Sum_probs=56.3
Q ss_pred EEEEecCCCCCccccccccCCCeE-EeCCEEEEEeC--CCC------CeEEEEcccC---------------cCCCCCCC
Q 033108 32 TTYTVGDSGGWSFNMASWAKGKRF-KAGDTLVFNYD--PTL------HNVVAVNRAG---------------YRSCTAPG 87 (127)
Q Consensus 32 ~~~~VG~~~gW~~~~~~Wa~~~~f-~vGD~L~F~y~--~~~------h~V~~v~~~~---------------Y~~C~~~~ 87 (127)
.++.|+...++.+.+ +..++ +.||++.|.+. ... |+++..+..+ |..=+..+
T Consensus 43 ~~V~I~~~d~m~F~P----~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~ 118 (167)
T 3ay2_A 43 CAATVESNDNMQFNT----KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDAR 118 (167)
T ss_dssp CEEEEEECTTSCBSC----SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTT
T ss_pred eEEEEEeCCCceEec----ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccc
Confidence 467777555777776 34677 77997666553 333 9998875432 21101111
Q ss_pred Cc---eeeccCCc-EEEec-----CcceEEEcCCCCCCCCCCEEEEEe
Q 033108 88 GA---KVYSSGKD-RIKLV-----RGQNFFICNSAGHCGSGMKIAINA 126 (127)
Q Consensus 88 ~~---~~~~~G~~-~v~L~-----~G~~yFic~~~~hC~~GmKl~I~V 126 (127)
-+ .....|.+ .++++ +|.|+|+|+.++|=+ |||-.|+|
T Consensus 119 vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V 165 (167)
T 3ay2_A 119 VVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTL 165 (167)
T ss_dssp EEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEE
T ss_pred hhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEE
Confidence 01 12334433 45553 599999999999988 99999987
No 27
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.93 E-value=7.5e-05 Score=52.47 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=55.4
Q ss_pred EEEecCCCCCccccccccCCCeEEeC-CEEEEEeCC--C------CCeEEEEccc----------------CcCCCCCCC
Q 033108 33 TYTVGDSGGWSFNMASWAKGKRFKAG-DTLVFNYDP--T------LHNVVAVNRA----------------GYRSCTAPG 87 (127)
Q Consensus 33 ~~~VG~~~gW~~~~~~Wa~~~~f~vG-D~L~F~y~~--~------~h~V~~v~~~----------------~Y~~C~~~~ 87 (127)
++.|+......+.| +..+++.| |.+.|.+.+ . .|+++..+.. +|..=+..+
T Consensus 4 ~v~i~~~d~m~F~p----~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~ 79 (129)
T 1cuo_A 4 ETTVTSGDTMTYST----RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKR 79 (129)
T ss_dssp EEEEEECSSSCCSC----SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTT
T ss_pred EEEEEeCCCceEcc----CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccccccccc
Confidence 44555445677766 34789999 976666643 2 3999987543 221101111
Q ss_pred Cc---eeeccCCc-EEEe------cCcceEEEcCCCCCCCCCCEEEEEe
Q 033108 88 GA---KVYSSGKD-RIKL------VRGQNFFICNSAGHCGSGMKIAINA 126 (127)
Q Consensus 88 ~~---~~~~~G~~-~v~L------~~G~~yFic~~~~hC~~GmKl~I~V 126 (127)
-+ .....|.+ ++++ .||.|+|+|+.|+|=+ |||-.|+|
T Consensus 80 ~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V 127 (129)
T 1cuo_A 80 VIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKL 127 (129)
T ss_dssp CSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEE
T ss_pred ceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEE
Confidence 11 12344433 4444 2599999999999999 89999887
No 28
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.89 E-value=1.7e-05 Score=55.08 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=52.0
Q ss_pred cCCCCCccccccccCCCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCce-eeccC-CcEEEec-CcceEEEcCCC
Q 033108 37 GDSGGWSFNMASWAKGKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGAK-VYSSG-KDRIKLV-RGQNFFICNSA 113 (127)
Q Consensus 37 G~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~~-~~~~G-~~~v~L~-~G~~yFic~~~ 113 (127)
|++.+..+.| ...++++||++.|......|+|...+. +-+..... ....| ..+++++ +|.|+|+|..
T Consensus 11 g~~g~~~F~P----~~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~- 80 (122)
T 2ux6_A 11 GKDGAMVFEP----ASLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP- 80 (122)
T ss_dssp ETTEEEEEES----SEEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT-
T ss_pred CCCCCceEeC----CEEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC-
Confidence 5443455555 357899999999999877899987531 11111111 11123 3467787 5999999997
Q ss_pred CCCCCCCEEEEEeC
Q 033108 114 GHCGSGMKIAINAM 127 (127)
Q Consensus 114 ~hC~~GmKl~I~V~ 127 (127)
|.. |+..|.|.
T Consensus 81 -H~~--M~G~I~V~ 91 (122)
T 2ux6_A 81 -HPF--MVGVVQVG 91 (122)
T ss_dssp -EEE--EEEEEEES
T ss_pred -Ccc--CEEEEEEe
Confidence 887 99999873
No 29
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.82 E-value=4e-05 Score=51.26 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=53.4
Q ss_pred ccEEEEecCCCCCccccccccCCCeEEeCCEEEEEeCCC-CCeEEEEcccC----cCCCCCCCCceeeccCC-cEEEec-
Q 033108 30 DATTYTVGDSGGWSFNMASWAKGKRFKAGDTLVFNYDPT-LHNVVAVNRAG----YRSCTAPGGAKVYSSGK-DRIKLV- 102 (127)
Q Consensus 30 ~a~~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~v~~~~----Y~~C~~~~~~~~~~~G~-~~v~L~- 102 (127)
.+.++.|-- .+|.+.| ...++++||++.|..... .|+|...+..+ ++.. ....|. ..++++
T Consensus 17 ~a~~~~V~~-~~~~F~P----~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~tf~~ 84 (105)
T 2ov0_A 17 ADGAIVVDI-AKMKYET----PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLTFTE 84 (105)
T ss_dssp CTTCEEEEE-ETTEESS----SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEEECS
T ss_pred CCcCEEEEE-eecEEcC----CEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEEeCC
Confidence 344555432 3567665 357899999999987654 89988643211 2111 122332 356677
Q ss_pred CcceEEEcCCCCCCCCCCEEEEEeC
Q 033108 103 RGQNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 103 ~G~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
+|.|+|.|.. |- ||+-.|.|.
T Consensus 85 ~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 85 AGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp CEEEEEECSS--CT--TCEEEEEEC
T ss_pred CEEEEEEeCC--CC--CCEEEEEEC
Confidence 5999999997 53 999999884
No 30
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.74 E-value=8.1e-05 Score=49.97 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=52.3
Q ss_pred EEEEecCCCCCccccccccCCCeEEeCCEEEEEeCCC-CCeEEEEcccCcCCCCCCCCc--eeeccCC-cEEEec-Ccce
Q 033108 32 TTYTVGDSGGWSFNMASWAKGKRFKAGDTLVFNYDPT-LHNVVAVNRAGYRSCTAPGGA--KVYSSGK-DRIKLV-RGQN 106 (127)
Q Consensus 32 ~~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~v~~~~Y~~C~~~~~~--~~~~~G~-~~v~L~-~G~~ 106 (127)
.++.|.- .++.+.| +..++++||++.|..... .|++...+... ..... .....|. ..++++ +|.|
T Consensus 20 ~~~~V~~-~~~~F~P----~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-----~~~~~~s~~l~~g~~~~~tf~~~G~y 89 (106)
T 1id2_A 20 DAVVVGI-EKMKYLT----PEVTIKAGETVYWVNGEVMPHNVAFKKGIV-----GEDAFRGEMMTKDQAYAITFNEAGSY 89 (106)
T ss_dssp TCEEEEE-ETTEESS----SEEEECTTCEEEEEECSSSCBCCEECTTTS-----SSSCEECCCBCTTEEEEEEECSCEEE
T ss_pred ccEEEEE-EecEEeC----CEEEECCCCEEEEEECCCCcEEEEEeCCCC-----CcccccccccCCCCEEEEEeCCCEEE
Confidence 4444432 2456655 357899999999997654 79987643220 00000 1122333 356777 5999
Q ss_pred EEEcCCCCCCCCCCEEEEEeC
Q 033108 107 FFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 107 yFic~~~~hC~~GmKl~I~V~ 127 (127)
.|+|.. |. ||+..|.|.
T Consensus 90 ~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 90 DYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp EEECSS--CT--TCEEEEEEC
T ss_pred EEEeCC--CC--CCEEEEEEC
Confidence 999997 76 999999884
No 31
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.69 E-value=0.00024 Score=49.83 Aligned_cols=90 Identities=27% Similarity=0.362 Sum_probs=54.8
Q ss_pred EEEecCCCCCccccccccCCCeE-EeCCEEEEEeC--CCC------CeEEEEcccC----------------cCCCCCCC
Q 033108 33 TYTVGDSGGWSFNMASWAKGKRF-KAGDTLVFNYD--PTL------HNVVAVNRAG----------------YRSCTAPG 87 (127)
Q Consensus 33 ~~~VG~~~gW~~~~~~Wa~~~~f-~vGD~L~F~y~--~~~------h~V~~v~~~~----------------Y~~C~~~~ 87 (127)
++.|+.+.++.+.| +..++ +.||++.|.+. ... |+++..+..+ |..=+..+
T Consensus 4 ~v~v~~~d~m~F~p----~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 79 (128)
T 1nwp_A 4 KVTVDSTDQMSFNT----KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDAR 79 (128)
T ss_dssp EEEEEECTTSCBSC----SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTT
T ss_pred EEEEEeCCCccEec----CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccch
Confidence 45565555677776 34677 78997766664 333 9999864332 21101010
Q ss_pred Cc---eeeccCCc-EEEe-----cCcc-eEEEcCCCCCCCCCCEEEEEeC
Q 033108 88 GA---KVYSSGKD-RIKL-----VRGQ-NFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 88 ~~---~~~~~G~~-~v~L-----~~G~-~yFic~~~~hC~~GmKl~I~V~ 127 (127)
-+ .....|.+ .+++ .+|. |.|+|+.|+|=+ |||-.|+|.
T Consensus 80 ~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 80 VIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp EEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred hheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 01 12344433 4544 3566 999999999999 999999884
No 32
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.65 E-value=0.00038 Score=48.78 Aligned_cols=89 Identities=22% Similarity=0.319 Sum_probs=52.8
Q ss_pred EEecCCCCCccccccccCCCeE-EeCCEEEEEeC--CC------CCeEEEEccc----------------CcCCCCCCCC
Q 033108 34 YTVGDSGGWSFNMASWAKGKRF-KAGDTLVFNYD--PT------LHNVVAVNRA----------------GYRSCTAPGG 88 (127)
Q Consensus 34 ~~VG~~~gW~~~~~~Wa~~~~f-~vGD~L~F~y~--~~------~h~V~~v~~~----------------~Y~~C~~~~~ 88 (127)
+.|+...++.+.| +..++ +.||++.|.+. .. .|+++..+.+ +|..=+..+-
T Consensus 4 v~v~~~d~m~F~p----~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~ 79 (128)
T 2iaa_C 4 VSIEGNDSMQFNT----KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERV 79 (128)
T ss_dssp EEEEECTTSCBSC----SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTE
T ss_pred EEEEeCCCceEec----CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchh
Confidence 4455455677766 23455 66997666664 33 2999876533 2321011110
Q ss_pred c---eeeccCCc-EEEe-----cCc-ceEEEcCCCCCCCCCCEEEEEeC
Q 033108 89 A---KVYSSGKD-RIKL-----VRG-QNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 89 ~---~~~~~G~~-~v~L-----~~G-~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
+ .....|.+ .+++ ++| .|.|+|+.|+|=+ |||-.|+|.
T Consensus 80 ~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 80 IAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp EEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred hccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 1 12344433 4444 357 4999999999998 999999884
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.59 E-value=0.00079 Score=47.16 Aligned_cols=90 Identities=21% Similarity=0.336 Sum_probs=52.9
Q ss_pred EEEecCCCCCccccccccCCCeE-EeCCEEEEEeC--CCC------CeEEEEccc----------------CcCCCCCCC
Q 033108 33 TYTVGDSGGWSFNMASWAKGKRF-KAGDTLVFNYD--PTL------HNVVAVNRA----------------GYRSCTAPG 87 (127)
Q Consensus 33 ~~~VG~~~gW~~~~~~Wa~~~~f-~vGD~L~F~y~--~~~------h~V~~v~~~----------------~Y~~C~~~~ 87 (127)
++.|+.+.+..+.| +..++ +.||++.|.+. ... |+++..+.. +|..=+..+
T Consensus 4 ~v~v~~~d~m~F~p----~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T 2ccw_A 4 EATVESNDAMQYNV----KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTR 79 (129)
T ss_dssp EEEEEECTTSCBSC----SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTT
T ss_pred EEEEEeCCCccEec----ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccccccccc
Confidence 44555555677766 23455 55997666664 333 999987543 232101111
Q ss_pred Cc---eeeccCCc-EEEe-----cCcc-eEEEcCCCCCCCCCCEEEEEeC
Q 033108 88 GA---KVYSSGKD-RIKL-----VRGQ-NFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 88 ~~---~~~~~G~~-~v~L-----~~G~-~yFic~~~~hC~~GmKl~I~V~ 127 (127)
-+ .....|.+ ++++ .+|. |+|+|+.|+|=+ |||-.|+|.
T Consensus 80 ~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 80 VIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp EEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred ceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 01 12344433 4444 3555 999999999988 999999874
No 34
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.41 E-value=7.6e-05 Score=55.52 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=49.0
Q ss_pred EEeCCEEEEE---eCC------CCCeEEEEcccCcCCCCCCC-Cceee--c--cCCcEEEe--------------cC-cc
Q 033108 55 FKAGDTLVFN---YDP------TLHNVVAVNRAGYRSCTAPG-GAKVY--S--SGKDRIKL--------------VR-GQ 105 (127)
Q Consensus 55 f~vGD~L~F~---y~~------~~h~V~~v~~~~Y~~C~~~~-~~~~~--~--~G~~~v~L--------------~~-G~ 105 (127)
.++||.|-|- |.. ..+.+++|++++|+.|+... +..++ + .+...+++ .+ -.
T Consensus 26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~ 105 (178)
T 1iko_P 26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105 (178)
T ss_dssp CCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 3569999886 322 24889999999999999863 22112 1 22233332 35 47
Q ss_pred eEEEcCCC-----------CCCCC-CCEEEEEeC
Q 033108 106 NFFICNSA-----------GHCGS-GMKIAINAM 127 (127)
Q Consensus 106 ~yFic~~~-----------~hC~~-GmKl~I~V~ 127 (127)
|||||.-. |+|.. +|||.|.|.
T Consensus 106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~ 139 (178)
T 1iko_P 106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG 139 (178)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEET
T ss_pred eEEEecCCcccccccccCCCccccceeEEEEEee
Confidence 88998764 68977 899999873
No 35
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.13 E-value=0.00047 Score=51.22 Aligned_cols=96 Identities=19% Similarity=0.295 Sum_probs=54.8
Q ss_pred ccccEEEEecCCCCCcccccccc---CCCeEEeCCEEEEE---eC-------CCCCeEEEEcccCcCCCCCCCCc-eeec
Q 033108 28 IVDATTYTVGDSGGWSFNMASWA---KGKRFKAGDTLVFN---YD-------PTLHNVVAVNRAGYRSCTAPGGA-KVYS 93 (127)
Q Consensus 28 ~a~a~~~~VG~~~gW~~~~~~Wa---~~~~f~vGD~L~F~---y~-------~~~h~V~~v~~~~Y~~C~~~~~~-~~~~ 93 (127)
.+.+..+.| =|+..-.... -...+++||.|-+- |+ .....++.|++++|++|+..+.. ..+.
T Consensus 28 ~~~~~r~~V----yWNSsNp~F~~~~~~i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~ 103 (177)
T 2x11_B 28 AAVADRYAV----YWNSSNPRFQRGDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWE 103 (177)
T ss_dssp --CCSEEEE----ECSTTCHHHHTSCCEEEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEE
T ss_pred eccCccCce----EcCCCCcCccCCCceEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEE
Confidence 355666666 5876421111 22567889999876 43 13567789999999999985432 1221
Q ss_pred -------cCCcEE--------------EecC-cceEEEcCCCCCCCCC--CEEEEEeC
Q 033108 94 -------SGKDRI--------------KLVR-GQNFFICNSAGHCGSG--MKIAINAM 127 (127)
Q Consensus 94 -------~G~~~v--------------~L~~-G~~yFic~~~~hC~~G--mKl~I~V~ 127 (127)
.|+.+| ...| -.||||+.-.++=..| |||+|.|+
T Consensus 104 C~~P~~p~~~~kftikFQ~FSP~p~G~EF~pG~~YYyISTS~~~~~g~~ClrLkV~V~ 161 (177)
T 2x11_B 104 CNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVR 161 (177)
T ss_dssp ECCTTCSSSSCEEEEECCSSCSSTTCCCCCTTEEEEEEEEESSCCCSSSCCEEEEEEC
T ss_pred eCCCCCCCCCeEEEEEEEEcCCCCCCccccCCCeEEEEecCCCCCCCCcceEEEEEEE
Confidence 133333 2345 4566776432221112 99999885
No 36
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.57 E-value=0.0026 Score=42.46 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=42.1
Q ss_pred CCCeEEeCCEEEEEeCC---CCCeEEEEcccCcCCCCCCCCceeeccCCc-EEEe--c-CcceEEEcCCCCCCCCC-CEE
Q 033108 51 KGKRFKAGDTLVFNYDP---TLHNVVAVNRAGYRSCTAPGGAKVYSSGKD-RIKL--V-RGQNFFICNSAGHCGSG-MKI 122 (127)
Q Consensus 51 ~~~~f~vGD~L~F~y~~---~~h~V~~v~~~~Y~~C~~~~~~~~~~~G~~-~v~L--~-~G~~yFic~~~~hC~~G-mKl 122 (127)
+..++++||.++|.+.+ ..|++..-+. + . ......|.. .+++ + ||.|+|.|.. ||..+ |+.
T Consensus 38 ~~i~v~~G~~V~~~~~n~d~~~H~~~i~~~-~-----~---~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g 106 (112)
T 1iby_A 38 ETLVVKKGDAVKVVVENKSPISEGFSIDAF-G-----V---QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPG 106 (112)
T ss_dssp CEEEEETTCEEEEEEEECSSSCEEEEEGGG-T-----E---EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCE
T ss_pred CEEEEeCCCEEEEEEEECCCCeEEEEEcCC-C-----c---eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEE
Confidence 35789999999997653 2688764221 1 0 112333433 4554 5 5999999997 67443 999
Q ss_pred EEEe
Q 033108 123 AINA 126 (127)
Q Consensus 123 ~I~V 126 (127)
.|.|
T Consensus 107 ~i~V 110 (112)
T 1iby_A 107 TLNV 110 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8887
No 37
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.42 E-value=0.0044 Score=44.39 Aligned_cols=74 Identities=24% Similarity=0.341 Sum_probs=47.7
Q ss_pred CeEEeCCEEEEE---eCC---------CCCeEEEEcccCcCCCCCC-CCceeec----cCCcE--------------EEe
Q 033108 53 KRFKAGDTLVFN---YDP---------TLHNVVAVNRAGYRSCTAP-GGAKVYS----SGKDR--------------IKL 101 (127)
Q Consensus 53 ~~f~vGD~L~F~---y~~---------~~h~V~~v~~~~Y~~C~~~-~~~~~~~----~G~~~--------------v~L 101 (127)
...++||.|-+- |.. ....++.|++++|++|+.. ++...+. .++.. +..
T Consensus 22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF 101 (141)
T 3d12_B 22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF 101 (141)
T ss_dssp ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence 356678999876 332 3567889999999999986 2322221 12222 233
Q ss_pred cC-cceEEEcCCC-----------CCCCC-CCEEEEEe
Q 033108 102 VR-GQNFFICNSA-----------GHCGS-GMKIAINA 126 (127)
Q Consensus 102 ~~-G~~yFic~~~-----------~hC~~-GmKl~I~V 126 (127)
.| -.||||+.-. |-|.. .|||.|.|
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V 139 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRV 139 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEEC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEe
Confidence 45 5677888643 35866 79999987
No 38
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.26 E-value=0.0053 Score=43.80 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=45.5
Q ss_pred CeEEeCCEEEEE---eC-------CCCCeEEEEcccCcCCCCCCCCc-eeec-------cCCcEEE--------------
Q 033108 53 KRFKAGDTLVFN---YD-------PTLHNVVAVNRAGYRSCTAPGGA-KVYS-------SGKDRIK-------------- 100 (127)
Q Consensus 53 ~~f~vGD~L~F~---y~-------~~~h~V~~v~~~~Y~~C~~~~~~-~~~~-------~G~~~v~-------------- 100 (127)
..+++||.|-+- |. .....++.|++++|++|+..+.. ..+. .++.+|+
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 557789999776 33 13567789999999999985432 1221 1333332
Q ss_pred ecC-cceEEEcCCCCCCCCC--CEEEEEeC
Q 033108 101 LVR-GQNFFICNSAGHCGSG--MKIAINAM 127 (127)
Q Consensus 101 L~~-G~~yFic~~~~hC~~G--mKl~I~V~ 127 (127)
..| -.||||+.-.+|=..| |||+|.|+
T Consensus 103 F~pG~~YY~ISts~~~~~g~~ClrL~V~V~ 132 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSCLKLKVFVR 132 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCCCEEEEEEC
T ss_pred ecCCCeEEEEEcCCCCCCCCceeEEEEEEE
Confidence 335 4567776433221112 99999885
No 39
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.24 E-value=0.0059 Score=45.45 Aligned_cols=95 Identities=13% Similarity=0.298 Sum_probs=53.6
Q ss_pred ccccccEEEEecCCCCCcccccccc---CCCeEEeCCEEEEE---eCC--------CCCeEEEEcccCcCCCCCCC-Cce
Q 033108 26 IEIVDATTYTVGDSGGWSFNMASWA---KGKRFKAGDTLVFN---YDP--------TLHNVVAVNRAGYRSCTAPG-GAK 90 (127)
Q Consensus 26 ~~~a~a~~~~VG~~~gW~~~~~~Wa---~~~~f~vGD~L~F~---y~~--------~~h~V~~v~~~~Y~~C~~~~-~~~ 90 (127)
++.+++..+.| =|+..-.... -...+++||.|-+- |.. ....++.|++++|++|+..+ +..
T Consensus 24 ~~~~sa~rh~V----yWNSsNp~F~~~~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~ 99 (182)
T 3czu_B 24 GAMDAADRHTV----FWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQV 99 (182)
T ss_dssp -----CCEEEE----ECSTTCGGGTTSCCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGE
T ss_pred hhhhhccccce----EEcCCCccccCCCceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcE
Confidence 33455666766 5876422221 22567889999876 332 24678899999999999763 222
Q ss_pred ee------c-cCCcEE--------------EecC-cceEEEcCC----CCCCCCCCEEEEEeC
Q 033108 91 VY------S-SGKDRI--------------KLVR-GQNFFICNS----AGHCGSGMKIAINAM 127 (127)
Q Consensus 91 ~~------~-~G~~~v--------------~L~~-G~~yFic~~----~~hC~~GmKl~I~V~ 127 (127)
.+ . .|+.+| ...| -.||||+.- +|.| ||+.|.|.
T Consensus 100 ~~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~ 159 (182)
T 3czu_B 100 RWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRC---LRLKVTVS 159 (182)
T ss_dssp EEEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSSCCCSC---CEEEEEEC
T ss_pred EEEeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEccCCCCCCcc---eEEEEEEe
Confidence 22 1 122222 2345 456777752 3445 89999874
No 40
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.22 E-value=0.028 Score=39.41 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=46.0
Q ss_pred CCccccccccCCCeEEeCCEEEEEeCCC--CCeEEEEcccCcCCCCCCCCceeeccCC---cEEEec-CcceEEEcCC--
Q 033108 41 GWSFNMASWAKGKRFKAGDTLVFNYDPT--LHNVVAVNRAGYRSCTAPGGAKVYSSGK---DRIKLV-RGQNFFICNS-- 112 (127)
Q Consensus 41 gW~~~~~~Wa~~~~f~vGD~L~F~y~~~--~h~V~~v~~~~Y~~C~~~~~~~~~~~G~---~~v~L~-~G~~yFic~~-- 112 (127)
.|.+.| +..++.+||.+.|..++. .|+...-+ .+. ......|. -.++.+ +|.|+|.|+.
T Consensus 54 ~~~f~P----~~l~Vp~G~~V~~~vts~DV~Hsf~ip~-~~~--------k~d~~PG~~~~~~~~~~~~G~y~~~C~e~C 120 (135)
T 2cua_A 54 AFGYQP----NPIEVPQGAEIVFKITSPDVIHGFHVEG-TNI--------NVEVLPGEVSTVRYTFKRPGEYRIICNQYC 120 (135)
T ss_dssp TTEEES----SSEEEETTSEEEEEEEBSSSCEEEEETT-SSC--------EEEECBTBCEEEEEECCSCEEEEEECCSCC
T ss_pred eCEEEC----CEEEEcCCCEEEEEEEeCCccceEEecC-CCc--------eeEeCCCCcEEEEEEcCCCEEEEEECcccC
Confidence 455544 458999999999998643 67766421 110 01122343 245666 5999999987
Q ss_pred -CCCCCCCCEEEEEeC
Q 033108 113 -AGHCGSGMKIAINAM 127 (127)
Q Consensus 113 -~~hC~~GmKl~I~V~ 127 (127)
.+| .+|+..|.|.
T Consensus 121 G~~H--~~M~g~v~V~ 134 (135)
T 2cua_A 121 GLGH--QNMFGTIVVK 134 (135)
T ss_dssp STTS--TTCEEEEEEE
T ss_pred CCCc--CCCEEEEEEE
Confidence 344 6899999873
No 41
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=95.83 E-value=0.012 Score=42.90 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=26.2
Q ss_pred CeEEeCCEEEEE---eCC--------CCCeEEEEcccCcCCCCCCC
Q 033108 53 KRFKAGDTLVFN---YDP--------TLHNVVAVNRAGYRSCTAPG 87 (127)
Q Consensus 53 ~~f~vGD~L~F~---y~~--------~~h~V~~v~~~~Y~~C~~~~ 87 (127)
..+++||.|-+- |.. ....++.|++++|++|+..+
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~ 77 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQ 77 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTT
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCC
Confidence 457789999886 321 23457899999999999865
No 42
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=95.16 E-value=0.22 Score=34.70 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=49.0
Q ss_pred EecCCCCCccccccccCCCeEEe-CCEEEEEeCC-C-------CCeEEEEccc----------------CcCCCCCCCCc
Q 033108 35 TVGDSGGWSFNMASWAKGKRFKA-GDTLVFNYDP-T-------LHNVVAVNRA----------------GYRSCTAPGGA 89 (127)
Q Consensus 35 ~VG~~~gW~~~~~~Wa~~~~f~v-GD~L~F~y~~-~-------~h~V~~v~~~----------------~Y~~C~~~~~~ 89 (127)
.|-.+.+..+.+ +..++.. |+++.|.+.. + .||++..+.+ +|-.=+..+-+
T Consensus 6 ~i~~~d~M~F~p----~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~vi 81 (125)
T 3fsa_A 6 DIQGNDQMQFNT----NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVI 81 (125)
T ss_dssp EEEBCTTSCBSC----SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCC
T ss_pred EEEccCCcEEec----CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccce
Confidence 333344566665 2355544 9998777753 3 3999987422 23211111111
Q ss_pred ---eeeccCC-cEEEec-----C-cceEEEcCCCCCCCCCCEEEEEeC
Q 033108 90 ---KVYSSGK-DRIKLV-----R-GQNFFICNSAGHCGSGMKIAINAM 127 (127)
Q Consensus 90 ---~~~~~G~-~~v~L~-----~-G~~yFic~~~~hC~~GmKl~I~V~ 127 (127)
.....|. .+++++ + |.|-|+|+ +|= |||-.|.|.
T Consensus 82 a~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 82 AHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp EECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred eccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 1234454 345544 2 99999999 776 999999873
No 43
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=94.63 E-value=0.035 Score=39.58 Aligned_cols=72 Identities=21% Similarity=0.354 Sum_probs=44.6
Q ss_pred EEeCCEEEEE---eCC------CCCeEEEEcccCcCCCCCCC-Cceee----ccCCcEE--------------EecC-cc
Q 033108 55 FKAGDTLVFN---YDP------TLHNVVAVNRAGYRSCTAPG-GAKVY----SSGKDRI--------------KLVR-GQ 105 (127)
Q Consensus 55 f~vGD~L~F~---y~~------~~h~V~~v~~~~Y~~C~~~~-~~~~~----~~G~~~v--------------~L~~-G~ 105 (127)
.++||.|-+- |.. ....++.|++++|++|+... +...+ ..++..+ +..| -.
T Consensus 25 v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~~ 104 (140)
T 2vsm_B 25 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 104 (140)
T ss_dssp CCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 4568999886 321 24678889999999999863 22122 1122222 2345 45
Q ss_pred eEEEcCCC-----------CCCCC-CCEEEEEe
Q 033108 106 NFFICNSA-----------GHCGS-GMKIAINA 126 (127)
Q Consensus 106 ~yFic~~~-----------~hC~~-GmKl~I~V 126 (127)
||||+.-. |-|.. .|||.|.|
T Consensus 105 YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V 137 (140)
T 2vsm_B 105 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKV 137 (140)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEE
T ss_pred eEEEecCCCCccccccccCCccccceEEEEEEe
Confidence 66777533 36866 79999987
No 44
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=92.90 E-value=0.54 Score=34.13 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=42.4
Q ss_pred CCCeEEeCCEEEEEeCCC--CCeEEEEcccCcCCCCCCCCcee-eccCC---cEEEec-CcceEEEcCC-CCCCCCCCEE
Q 033108 51 KGKRFKAGDTLVFNYDPT--LHNVVAVNRAGYRSCTAPGGAKV-YSSGK---DRIKLV-RGQNFFICNS-AGHCGSGMKI 122 (127)
Q Consensus 51 ~~~~f~vGD~L~F~y~~~--~h~V~~v~~~~Y~~C~~~~~~~~-~~~G~---~~v~L~-~G~~yFic~~-~~hC~~GmKl 122 (127)
+...+.+|+.++|.-++. .|+...-+ + .++. ...|. ..++.+ ||.||+.|+. -|+--.+|+.
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~IP~---l-------gik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g 162 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHVEG---T-------NINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFG 162 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEETT---S-------SCEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEECC---C-------CeEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEE
Confidence 567899999999987653 66665421 1 1111 12343 245556 5999999996 3444456999
Q ss_pred EEEe
Q 033108 123 AINA 126 (127)
Q Consensus 123 ~I~V 126 (127)
.|.|
T Consensus 163 ~V~V 166 (168)
T 3s8f_B 163 TIVV 166 (168)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 45
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=91.33 E-value=0.25 Score=39.96 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=46.2
Q ss_pred cCCCeEEeCCEEEEEeCCC---CCeEEEEcccCcCCCCCCCCceeeccCC-c--EEEec-CcceEEEcCCCCCCCCCCEE
Q 033108 50 AKGKRFKAGDTLVFNYDPT---LHNVVAVNRAGYRSCTAPGGAKVYSSGK-D--RIKLV-RGQNFFICNSAGHCGSGMKI 122 (127)
Q Consensus 50 a~~~~f~vGD~L~F~y~~~---~h~V~~v~~~~Y~~C~~~~~~~~~~~G~-~--~v~L~-~G~~yFic~~~~hC~~GmKl 122 (127)
....+++.||+++|++.+. .|++..-....-..|.. ..|. . .|+++ +|++||.|..++|=..||+.
T Consensus 54 ~p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i-------~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G 126 (447)
T 2dv6_A 54 NPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN-------GKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEG 126 (447)
T ss_dssp SCCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC-------STTBEEEEEEECCSCEEEEEECCSTTHHHHTCEE
T ss_pred CCeEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec-------CCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEE
Confidence 3568899999999888532 47775422222123332 2222 2 34555 59999999998888889988
Q ss_pred EEEe
Q 033108 123 AINA 126 (127)
Q Consensus 123 ~I~V 126 (127)
.|.|
T Consensus 127 ~i~V 130 (447)
T 2dv6_A 127 NIQV 130 (447)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 46
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.18 E-value=0.53 Score=40.84 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=42.6
Q ss_pred CCCeEEeCCEEEEEeCC------CCCeEEEEcccCcCCCCCCCCce-eeccCCc---EEEec-CcceEEEcCCCCCCCCC
Q 033108 51 KGKRFKAGDTLVFNYDP------TLHNVVAVNRAGYRSCTAPGGAK-VYSSGKD---RIKLV-RGQNFFICNSAGHCGSG 119 (127)
Q Consensus 51 ~~~~f~vGD~L~F~y~~------~~h~V~~v~~~~Y~~C~~~~~~~-~~~~G~~---~v~L~-~G~~yFic~~~~hC~~G 119 (127)
...++.+||.+.|..++ -.|+...-+ + .+. ....|.. +|+.+ ||.|||+|+. .|-.+
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---l-------GIK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~ 625 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---H-------GVSMEISPQQTSSITFVADKPGLHWYYCSW--FCHAL 625 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEEETT---T-------TEEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTT
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeEecC---C-------CceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCC
Confidence 45789999999998765 267776521 1 111 1223432 45556 5999999998 56554
Q ss_pred ---CEEEEEe
Q 033108 120 ---MKIAINA 126 (127)
Q Consensus 120 ---mKl~I~V 126 (127)
|+..|.|
T Consensus 626 Hs~M~G~ViV 635 (638)
T 3sbq_A 626 HMEMVGRMMV 635 (638)
T ss_dssp CTTCEEEEEE
T ss_pred cccceEEEEE
Confidence 9998887
No 47
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=91.17 E-value=0.53 Score=40.52 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=41.8
Q ss_pred CCCeEEeCCEEEEEeCCC------CCeEEEEcccCcCCCCCCCCceeeccCCc---EEEec-CcceEEEcCC---CCCCC
Q 033108 51 KGKRFKAGDTLVFNYDPT------LHNVVAVNRAGYRSCTAPGGAKVYSSGKD---RIKLV-RGQNFFICNS---AGHCG 117 (127)
Q Consensus 51 ~~~~f~vGD~L~F~y~~~------~h~V~~v~~~~Y~~C~~~~~~~~~~~G~~---~v~L~-~G~~yFic~~---~~hC~ 117 (127)
...++.+||+++|...+. .|++..-+ .+. ......|.. .|+.+ ||.|||.|.. ..|
T Consensus 513 p~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv--------~~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H-- 581 (595)
T 1fwx_A 513 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGV--------AMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH-- 581 (595)
T ss_dssp SEEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTE--------EEEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--
T ss_pred CEEEEECCCEEEEEEEeCCCCCCceeeEEecC-CCc--------ceeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--
Confidence 347899999999997541 57776422 110 011223432 45666 5999999984 346
Q ss_pred CCCEEEEEe
Q 033108 118 SGMKIAINA 126 (127)
Q Consensus 118 ~GmKl~I~V 126 (127)
.||+..|.|
T Consensus 582 ~gM~G~IiV 590 (595)
T 1fwx_A 582 MEMRGRMLV 590 (595)
T ss_dssp TTCEEEEEE
T ss_pred cCCEEEEEE
Confidence 499999887
No 48
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=90.80 E-value=0.15 Score=35.98 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=26.1
Q ss_pred CeEEeCCEEEEE---eCC--------CCCeEEEEcccCcCCCCCCC
Q 033108 53 KRFKAGDTLVFN---YDP--------TLHNVVAVNRAGYRSCTAPG 87 (127)
Q Consensus 53 ~~f~vGD~L~F~---y~~--------~~h~V~~v~~~~Y~~C~~~~ 87 (127)
..+++||.|-+- |+. ....++.|++++|++|+..+
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~ 67 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS 67 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCC
Confidence 456789999775 322 24677889999999999764
No 49
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=65.49 E-value=5.6 Score=33.52 Aligned_cols=74 Identities=12% Similarity=0.236 Sum_probs=47.8
Q ss_pred CCeEEeCCEEEEEeCCC--CCeEEEE-cccCcCCCCCCCCceeecc--CCcEEEecCcceEEEcCCCCCCCCCC-EEEEE
Q 033108 52 GKRFKAGDTLVFNYDPT--LHNVVAV-NRAGYRSCTAPGGAKVYSS--GKDRIKLVRGQNFFICNSAGHCGSGM-KIAIN 125 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~--~h~V~~v-~~~~Y~~C~~~~~~~~~~~--G~~~v~L~~G~~yFic~~~~hC~~Gm-Kl~I~ 125 (127)
+.-++.|-.++|.--.. ...++.+ +-.....|..+- ..|.. =+....|++|.|||..+...-|++|- |+.|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (491)
T 3l6w_A 412 KVVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPP--FSFHAFELGKMYSVESGDYFMTASTTELCNDNNLRIHVH 489 (491)
T ss_pred eeEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCC--CccCcccccceEecCCCceEecCChHHHHhCCceeEEEE
Confidence 45677888888854321 1122222 334445698852 22221 12456788999999999999999997 99998
Q ss_pred eC
Q 033108 126 AM 127 (127)
Q Consensus 126 V~ 127 (127)
|.
T Consensus 490 ~~ 491 (491)
T 3l6w_A 490 VD 491 (491)
T ss_pred eC
Confidence 73
No 50
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=59.74 E-value=0.068 Score=27.13 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=14.4
Q ss_pred CCeEEeCCEEEEEeCCCCC
Q 033108 52 GKRFKAGDTLVFNYDPTLH 70 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~~h 70 (127)
.++|.+.|.|.|.|....|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 4789999999999987644
No 51
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=56.00 E-value=10 Score=29.17 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=41.5
Q ss_pred CCeEEeCCEEEEEeCCC-----CCeEEEEcccCcCCCCCCCCceeeccCCc---EEEec-CcceEEEcCCCC----CCCC
Q 033108 52 GKRFKAGDTLVFNYDPT-----LHNVVAVNRAGYRSCTAPGGAKVYSSGKD---RIKLV-RGQNFFICNSAG----HCGS 118 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~-----~h~V~~v~~~~Y~~C~~~~~~~~~~~G~~---~v~L~-~G~~yFic~~~~----hC~~ 118 (127)
..+++.||++++++.+. .|++..=.....+ ...+......|.. .++++ +|++||-|...+ |=..
T Consensus 66 ~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~---~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 142 (336)
T 1oe1_A 66 TLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL---GGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142 (336)
T ss_dssp CEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG---GGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred eEEEcCCCEEEEEEEcCCCCCccccceECCCCCCC---CCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhC
Confidence 47889999999887642 4666542111000 0011111233432 45556 499999999754 4467
Q ss_pred CCEEEEEe
Q 033108 119 GMKIAINA 126 (127)
Q Consensus 119 GmKl~I~V 126 (127)
||.-.+.|
T Consensus 143 Gl~G~liV 150 (336)
T 1oe1_A 143 GMSGTLMV 150 (336)
T ss_dssp TCEEEEEE
T ss_pred CCeEEEEE
Confidence 98877665
No 52
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=55.77 E-value=59 Score=25.56 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=47.0
Q ss_pred EEecCCCCCccccccc----cCCCeEEeCCEEEEEeCCC--CCeEEEEcccCcCCCCCCCCceee-ccCCc---EEEec-
Q 033108 34 YTVGDSGGWSFNMASW----AKGKRFKAGDTLVFNYDPT--LHNVVAVNRAGYRSCTAPGGAKVY-SSGKD---RIKLV- 102 (127)
Q Consensus 34 ~~VG~~~gW~~~~~~W----a~~~~f~vGD~L~F~y~~~--~h~V~~v~~~~Y~~C~~~~~~~~~-~~G~~---~v~L~- 102 (127)
.++|-.=.|.+.+.+- .+...+.+|..++|.-++. .|+-..-+. .++.. -.|.. .++.+
T Consensus 130 kVig~QW~W~f~Ypd~~i~t~n~l~lP~g~~V~~~lTS~DViHsf~IP~l----------g~k~DaiPGr~n~~~~~~~~ 199 (315)
T 1fft_B 130 EVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRL----------GSQIYAMAGMQTRLHLIANE 199 (315)
T ss_dssp EEECCTTSCEEECTTTCCEEESBCCCCSSSEEEEEECBSSSCEEEEEGGG----------TEEEEECBTSCEEEEEECCS
T ss_pred EEeeeeccEEEecCCCcccccceEEEeCCCEEEEEEEeCCccceeeeccc----------CcEEeecCCcceeeEEecCC
Confidence 3455444455554221 2356788999999998753 555554211 11111 12322 45556
Q ss_pred CcceEEEcCCCCCCCCC---CEEEEEe
Q 033108 103 RGQNFFICNSAGHCGSG---MKIAINA 126 (127)
Q Consensus 103 ~G~~yFic~~~~hC~~G---mKl~I~V 126 (127)
||.||..|+. .|..| |++.|.|
T Consensus 200 ~G~y~g~CsE--~CG~~Hs~M~~~v~v 224 (315)
T 1fft_B 200 PGTYDGISAS--YSGPGFSGMKFKAIA 224 (315)
T ss_dssp CBCCEEBCCS--CCSTTTTTCCEECCB
T ss_pred CeEEEEeccc--cchhhHHhccceEEE
Confidence 5999999996 67765 8887765
No 53
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=54.78 E-value=11 Score=29.02 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=41.6
Q ss_pred CCeEEeCCEEEEEeCCC-----CCeEEEEcccCcCCCCCCCCceeeccCCc---EEEec-CcceEEEcCCCC-----CCC
Q 033108 52 GKRFKAGDTLVFNYDPT-----LHNVVAVNRAGYRSCTAPGGAKVYSSGKD---RIKLV-RGQNFFICNSAG-----HCG 117 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~-----~h~V~~v~~~~Y~~C~~~~~~~~~~~G~~---~v~L~-~G~~yFic~~~~-----hC~ 117 (127)
..+++.||++++++.+. -|.+..-...+.+.- .+......|.. .|+++ +|++||-|...+ |=.
T Consensus 65 ~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 141 (333)
T 1mzy_A 65 LMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141 (333)
T ss_dssp EEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred cEEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhh
Confidence 37789999999987643 366654221111100 01111233332 45555 499999998764 666
Q ss_pred CCCEEEEEe
Q 033108 118 SGMKIAINA 126 (127)
Q Consensus 118 ~GmKl~I~V 126 (127)
.||.-.+.|
T Consensus 142 ~Gl~G~~iV 150 (333)
T 1mzy_A 142 SGMAGCIMV 150 (333)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 788776655
No 54
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=50.91 E-value=11 Score=29.20 Aligned_cols=72 Identities=24% Similarity=0.320 Sum_probs=39.6
Q ss_pred CCeEEeCCEEEEEeCCC-----CCeEEEEcccCcCCCCCCCCceeeccCC-c--EEEec-CcceEEEcCCC---CCCCCC
Q 033108 52 GKRFKAGDTLVFNYDPT-----LHNVVAVNRAGYRSCTAPGGAKVYSSGK-D--RIKLV-RGQNFFICNSA---GHCGSG 119 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~-----~h~V~~v~~~~Y~~C~~~~~~~~~~~G~-~--~v~L~-~G~~yFic~~~---~hC~~G 119 (127)
..+++.||++++++.+. .|++..=.....|. ...... ...|. . .++.+ +|++||-|... .|=..|
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG--~~~~~~-i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~G 147 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG--GAAATF-TAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG 147 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG--GTTTTC-BCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC--CCccee-ecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcc
Confidence 47899999999987543 35554310000110 000011 22332 2 34555 59999999763 345678
Q ss_pred CEEEEEe
Q 033108 120 MKIAINA 126 (127)
Q Consensus 120 mKl~I~V 126 (127)
|.-.+.|
T Consensus 148 l~G~~iV 154 (327)
T 1kbv_A 148 MYGLILV 154 (327)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 8877665
No 55
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=47.40 E-value=7.6 Score=25.14 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=15.9
Q ss_pred cCCCeEEeCCEEEEEeCCC
Q 033108 50 AKGKRFKAGDTLVFNYDPT 68 (127)
Q Consensus 50 a~~~~f~vGD~L~F~y~~~ 68 (127)
+..+..+.||.|+|+|...
T Consensus 73 v~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHTCCTTCEEEEEECSS
T ss_pred HHHcCCCCCCEEEEEEcCC
Confidence 4567899999999999864
No 56
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=46.79 E-value=9.9 Score=24.92 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=24.3
Q ss_pred EEEecCCCCCccccccccCCCeEEeCCEEEEE
Q 033108 33 TYTVGDSGGWSFNMASWAKGKRFKAGDTLVFN 64 (127)
Q Consensus 33 ~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~ 64 (127)
+.++||+.| .+..+.|-.. |..||++.+.
T Consensus 41 ~~~l~DeTG-~I~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA-RIRISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC-EEEEEEESSC--CCTTEEEEEE
T ss_pred EEEEEcCCC-eEEEEEEcCc--cCCCCEEEEE
Confidence 578999888 6666889766 9999999998
No 57
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=43.98 E-value=7 Score=27.31 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=18.7
Q ss_pred cCCCeEEeCCEEEEEeCCCCCeEEEE
Q 033108 50 AKGKRFKAGDTLVFNYDPTLHNVVAV 75 (127)
Q Consensus 50 a~~~~f~vGD~L~F~y~~~~h~V~~v 75 (127)
+..+.+++||.++|.+....--+++|
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEEE
Confidence 46688999999999998643224443
No 58
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=42.71 E-value=10 Score=30.33 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=39.1
Q ss_pred CCeEEeCCEEEEEeCCC-----CCeEEEEcccCcCCCCCCCCceeeccCCc---EEEec-CcceEEEcCC---CCCCCCC
Q 033108 52 GKRFKAGDTLVFNYDPT-----LHNVVAVNRAGYRSCTAPGGAKVYSSGKD---RIKLV-RGQNFFICNS---AGHCGSG 119 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~-----~h~V~~v~~~~Y~~C~~~~~~~~~~~G~~---~v~L~-~G~~yFic~~---~~hC~~G 119 (127)
..+++.||++++.+.+. .|++..=.....+. ... ......|.. .|+.+ +|++||-|-. ..|=..|
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG--~~~-~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 137 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG--GAE-SSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANG 137 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG--GGG-GCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC--CCc-cEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCc
Confidence 47889999999987643 45554311000000 000 011233332 34555 5999999943 3455678
Q ss_pred CEEEEEe
Q 033108 120 MKIAINA 126 (127)
Q Consensus 120 mKl~I~V 126 (127)
|.-.+.|
T Consensus 138 l~G~~iv 144 (442)
T 2zoo_A 138 MYGLILV 144 (442)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 8776665
No 59
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=41.73 E-value=11 Score=24.30 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=12.1
Q ss_pred CeEEeCCEEEEE-eCCC
Q 033108 53 KRFKAGDTLVFN-YDPT 68 (127)
Q Consensus 53 ~~f~vGD~L~F~-y~~~ 68 (127)
..|++||.|+|. |+++
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 459999999995 6433
No 60
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=38.58 E-value=9.5 Score=25.67 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=10.1
Q ss_pred CeEEeCCEEEE
Q 033108 53 KRFKAGDTLVF 63 (127)
Q Consensus 53 ~~f~vGD~L~F 63 (127)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 57899999999
No 61
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=37.20 E-value=48 Score=20.38 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=30.2
Q ss_pred CCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCc--eeeccCCcEEEec
Q 033108 52 GKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGA--KVYSSGKDRIKLV 102 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~--~~~~~G~~~v~L~ 102 (127)
..+|.+||++.=+| +|.+.-+++.-.+++ ..+|+ -.|.+ .+..+|.
T Consensus 7 ~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKd-gT~e~L~ 54 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKD-GTELALK 54 (66)
T ss_dssp SSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETT-SCEEEEE
T ss_pred ceEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecC-CCEEeec
Confidence 36899999999999 777777766444444 44554 34667 4445554
No 62
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=37.18 E-value=26 Score=26.03 Aligned_cols=63 Identities=25% Similarity=0.436 Sum_probs=37.5
Q ss_pred CCeEEeCCEEEEEeCCC--CCeEEEEcccCcCCCCCCCCceee-ccCC-c--EEEec-CcceEEEcCCCCCCCCC---CE
Q 033108 52 GKRFKAGDTLVFNYDPT--LHNVVAVNRAGYRSCTAPGGAKVY-SSGK-D--RIKLV-RGQNFFICNSAGHCGSG---MK 121 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~--~h~V~~v~~~~Y~~C~~~~~~~~~-~~G~-~--~v~L~-~G~~yFic~~~~hC~~G---mK 121 (127)
...+.+|+.++|.-++. .|+-..-+. .++.. -.|. . .+..+ +|.||..|+. .|..| |+
T Consensus 42 ~l~lP~g~~V~~~lTS~DViHSF~IP~l----------gvK~daiPGr~n~l~~~~~~pG~y~g~CsE--~CG~~Hs~M~ 109 (205)
T 1cyx_A 42 EIAFPANTPVYFKVTSNSVMHSFFIPRL----------GSQIYAMAGMQTRLHLIANEPGTYDGICAE--ICGPGHSGMK 109 (205)
T ss_dssp EEEEETTSCEEEEEEESSSCEEEEEGGG----------TEEEEECTTCCEEEEECCSSSEEEEEEECS--CCSTTSTTCC
T ss_pred eEEEeCCCEEEEEEecCCceeeEEeccc----------CcEEEecCCceEEEEEEeCCCeEEEEEccc--ccccchhhce
Confidence 35677888888887643 455544211 11111 1232 2 34445 5999999996 67665 88
Q ss_pred EEEEe
Q 033108 122 IAINA 126 (127)
Q Consensus 122 l~I~V 126 (127)
+.|.|
T Consensus 110 ~~v~v 114 (205)
T 1cyx_A 110 FKAIA 114 (205)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88776
No 63
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=36.06 E-value=28 Score=21.73 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=14.8
Q ss_pred CCCeEEeCCEEEEEeCCC
Q 033108 51 KGKRFKAGDTLVFNYDPT 68 (127)
Q Consensus 51 ~~~~f~vGD~L~F~y~~~ 68 (127)
...+|.+||.|+|--+.+
T Consensus 26 ~rN~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEI 43 (89)
T ss_dssp ESSCBCTTCEEEEESTTS
T ss_pred EcCCcCCCCEEEEEcCCC
Confidence 368999999999986654
No 64
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=34.82 E-value=35 Score=26.15 Aligned_cols=72 Identities=25% Similarity=0.309 Sum_probs=40.6
Q ss_pred CCeEEeCCEEEEEeCCC-----CCeEEEEcccCcCCCCCCCCceeeccCCc---EEEec-CcceEEEcCCCC----CCCC
Q 033108 52 GKRFKAGDTLVFNYDPT-----LHNVVAVNRAGYRSCTAPGGAKVYSSGKD---RIKLV-RGQNFFICNSAG----HCGS 118 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~-----~h~V~~v~~~~Y~~C~~~~~~~~~~~G~~---~v~L~-~G~~yFic~~~~----hC~~ 118 (127)
..+++.||++++++.+. .|.+..-.....+ + ..+......|.. .|+++ +|++||-|...+ |=..
T Consensus 72 ~i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~-~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~ 148 (340)
T 2bw4_A 72 LMVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--G-GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS 148 (340)
T ss_dssp EEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred cEEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--C-CccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhC
Confidence 37789999999988653 3655432111000 0 011111233332 45555 499999998754 4557
Q ss_pred CCEEEEEe
Q 033108 119 GMKIAINA 126 (127)
Q Consensus 119 GmKl~I~V 126 (127)
||.-.+.|
T Consensus 149 Gl~G~~iV 156 (340)
T 2bw4_A 149 GMNGAIMV 156 (340)
T ss_dssp TCEEEEEE
T ss_pred cCEEEEEE
Confidence 88766554
No 65
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=32.51 E-value=65 Score=24.20 Aligned_cols=85 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred CccccccccCCCeEEeCCEEEEEeCCC---CCeEEE--EcccCcCCCCCCCCceeeccCCcEEEec--C-cceEEEcCCC
Q 033108 42 WSFNMASWAKGKRFKAGDTLVFNYDPT---LHNVVA--VNRAGYRSCTAPGGAKVYSSGKDRIKLV--R-GQNFFICNSA 113 (127)
Q Consensus 42 W~~~~~~Wa~~~~f~vGD~L~F~y~~~---~h~V~~--v~~~~Y~~C~~~~~~~~~~~G~~~v~L~--~-G~~yFic~~~ 113 (127)
|.++-+--....+++.||++++.+.+. .|++.. +.....|.=.......+-..+..++.++ + |++||-|-..
T Consensus 57 ~~~ng~~pgP~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~ 136 (288)
T 3gdc_A 57 WSYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQS 136 (288)
T ss_dssp EEETTBSSCCEEEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECCCS
T ss_pred EEECCccCCCcEEEeCCCEEEEEEEeCCCCcccEEeccccccccCCCCCccceeECCCCEEEEEEEcCCCccEEEEecCc
Q ss_pred ---CCCCCCCEEEEEe
Q 033108 114 ---GHCGSGMKIAINA 126 (127)
Q Consensus 114 ---~hC~~GmKl~I~V 126 (127)
.|=..||--.+.|
T Consensus 137 ~~~~~~~~Gl~G~liV 152 (288)
T 3gdc_A 137 PLAPHIAKGLYGGFIV 152 (288)
T ss_dssp SHHHHHHTTCEEEEEE
T ss_pred chHHHHhCcCeEEEEE
No 66
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=32.40 E-value=35 Score=26.66 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEec-CcceEEEcCCCCCCCCC---CEEEEEe
Q 033108 98 RIKLV-RGQNFFICNSAGHCGSG---MKIAINA 126 (127)
Q Consensus 98 ~v~L~-~G~~yFic~~~~hC~~G---mKl~I~V 126 (127)
.++.+ ||.||..|+. -|..| |++.|.|
T Consensus 232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~v 262 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKA 262 (298)
T ss_dssp EEECSSSEEEEECCCS--CCSTTTTSCCEEEEE
T ss_pred EEEeCCCEEEEEEccc--ccCcCccCCeeEEEE
Confidence 35556 5999999997 67665 8888876
No 67
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=31.33 E-value=12 Score=25.38 Aligned_cols=12 Identities=50% Similarity=0.960 Sum_probs=10.4
Q ss_pred CeEEeCCEEEEE
Q 033108 53 KRFKAGDTLVFN 64 (127)
Q Consensus 53 ~~f~vGD~L~F~ 64 (127)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 578999999994
No 68
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=30.55 E-value=40 Score=25.70 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEec-CcceEEEcCCCCCCCCC---CEEEEEe
Q 033108 98 RIKLV-RGQNFFICNSAGHCGSG---MKIAINA 126 (127)
Q Consensus 98 ~v~L~-~G~~yFic~~~~hC~~G---mKl~I~V 126 (127)
.++.+ ||.||..|+. -|..| |++.|.|
T Consensus 214 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~v 244 (262)
T 2gsm_B 214 WFRAEREGIFFGQCSE--LCGISHAYMPITVKV 244 (262)
T ss_dssp EEECCSCEEEEECCCS--CCSTTGGGCCEEEEE
T ss_pred EEecCCcEEEEEEChH--hcccCcccCeEEEEE
Confidence 45556 5999999997 68776 8888776
No 69
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=30.00 E-value=39 Score=21.99 Aligned_cols=32 Identities=16% Similarity=0.414 Sum_probs=25.2
Q ss_pred EEEEecCCCCCcccccccc--CCCeEEeCCEEEEE
Q 033108 32 TTYTVGDSGGWSFNMASWA--KGKRFKAGDTLVFN 64 (127)
Q Consensus 32 ~~~~VG~~~gW~~~~~~Wa--~~~~f~vGD~L~F~ 64 (127)
...++||+.| .+..+.|. ....+..||++.++
T Consensus 37 ~~~~l~DeTG-~I~~t~W~~~~~~~~~~G~~V~i~ 70 (109)
T 2kbn_A 37 QVGLLGDETG-IIKFTIWKNAELPLLEQGESYLLR 70 (109)
T ss_dssp EEEEEECTTC-CEEEEEEGGGCCCCCCTTCEEEEE
T ss_pred EEEEEECCCC-eEEEEEECcccccccCCCCEEEEE
Confidence 4568999888 66667886 34689999999998
No 70
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=27.47 E-value=39 Score=25.18 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEec-CcceEEEcCCCCCCCCC---CEEEEEe
Q 033108 99 IKLV-RGQNFFICNSAGHCGSG---MKIAINA 126 (127)
Q Consensus 99 v~L~-~G~~yFic~~~~hC~~G---mKl~I~V 126 (127)
++.+ ||.+|..|+. -|..| |.+.|.|
T Consensus 184 ~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~v 213 (227)
T 1v54_B 184 LMSSRPGLYYGQCSE--ICGSNHSFMPIVLEL 213 (227)
T ss_dssp ECCSSCEEEEECCCS--CCSTTGGGCCEEEEE
T ss_pred EecCCcEEEEEEehh--hcccccccCeEEEEE
Confidence 4445 4999999986 78776 8887765
No 71
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=26.97 E-value=26 Score=21.92 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=13.7
Q ss_pred CCeEEeCCEEEEEeCC
Q 033108 52 GKRFKAGDTLVFNYDP 67 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~ 67 (127)
-..+++||.+.|.+..
T Consensus 51 l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 3679999999999974
No 72
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=25.46 E-value=10 Score=29.13 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=32.0
Q ss_pred CCeEEeCCEEEEEeCCC-C-CeEEEE--cccCcCCCC--CCCCceeeccCCcE--EEec-CcceEEEcCCCCCCCCCCEE
Q 033108 52 GKRFKAGDTLVFNYDPT-L-HNVVAV--NRAGYRSCT--APGGAKVYSSGKDR--IKLV-RGQNFFICNSAGHCGSGMKI 122 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~-~-h~V~~v--~~~~Y~~C~--~~~~~~~~~~G~~~--v~L~-~G~~yFic~~~~hC~~GmKl 122 (127)
..+++.||+++|..-+. . +....+ ....+.. + ..+.+.+...+... ++.+ +|.++|.|-...|-..||..
T Consensus 216 ~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~-dG~~~dtv~l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM~~ 294 (306)
T 1sdd_A 216 DITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ-NHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQA 294 (306)
T ss_dssp CCCCCCC------BBCCCSSSCEECCBCSSTTCEE-TTEECSCCCEETTCCBC--------CCCCCBCCSTTTGGGTCBC
T ss_pred ceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee-CCEEcceEEECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCCeE
Confidence 45678899988887542 1 122211 1111111 0 01111222222223 3444 59999999999999999987
Q ss_pred EEEe
Q 033108 123 AINA 126 (127)
Q Consensus 123 ~I~V 126 (127)
.+.|
T Consensus 295 ~~~V 298 (306)
T 1sdd_A 295 YIDI 298 (306)
T ss_dssp CC--
T ss_pred EEEE
Confidence 6665
No 73
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=25.41 E-value=28 Score=22.16 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=15.4
Q ss_pred cccCCCeEEeCCEEEEEeCC
Q 033108 48 SWAKGKRFKAGDTLVFNYDP 67 (127)
Q Consensus 48 ~Wa~~~~f~vGD~L~F~y~~ 67 (127)
+.+.-..+++||.+.|.+..
T Consensus 55 ~~~~l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 55 PQTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp TTCEECCCCTTCEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEE
Confidence 33344779999999999974
No 74
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=24.91 E-value=95 Score=19.12 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=29.9
Q ss_pred CCeEEeCCEEEEEeCCCCCeEEEEcccCcCCCCCCCCc--eeeccCCcEEEec
Q 033108 52 GKRFKAGDTLVFNYDPTLHNVVAVNRAGYRSCTAPGGA--KVYSSGKDRIKLV 102 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~~h~V~~v~~~~Y~~C~~~~~~--~~~~~G~~~v~L~ 102 (127)
..+|.+||++.=+|. |...-+++.-.+++ ..+|+ -.|.+ .+..+|.
T Consensus 10 ~~~f~vgd~VmaRW~-Gd~~yYparItSit---s~~~~Y~VkfKd-gT~e~L~ 57 (68)
T 2dig_A 10 SRKFADGEVVRGRWP-GSSLYYEVEILSHD---STSQLYTVKYKD-GTELELK 57 (68)
T ss_dssp CCSSCSSCEEEEECT-TTCCEEEEEEEEEE---TTTTEEEEECTT-SCEEEEE
T ss_pred ceEeecCCEEEEEcc-CCccceEEEEEEec---cCCceEEEEecC-CCEEEec
Confidence 368999999999998 77777765434444 44554 34666 4445554
No 75
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=23.30 E-value=77 Score=24.06 Aligned_cols=17 Identities=29% Similarity=0.733 Sum_probs=15.1
Q ss_pred CCeEEeCCEEEEEeCCC
Q 033108 52 GKRFKAGDTLVFNYDPT 68 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~ 68 (127)
.+.|..||++.|.|.++
T Consensus 152 ~~~l~kGs~I~~~~~p~ 168 (246)
T 4doi_A 152 EETFPPGSSILFALSPT 168 (246)
T ss_dssp TCEECTTCEEEEEECTT
T ss_pred cCcCCCCCEEEEEEeCC
Confidence 46899999999999975
No 76
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=23.29 E-value=57 Score=23.58 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=20.4
Q ss_pred ccccCCCeEEeCCEEEEEeCCCCCeEEEE
Q 033108 47 ASWAKGKRFKAGDTLVFNYDPTLHNVVAV 75 (127)
Q Consensus 47 ~~Wa~~~~f~vGD~L~F~y~~~~h~V~~v 75 (127)
+-|....+|..||.|.|.|.++..-.+.+
T Consensus 132 ~~F~~~~~~~kGd~i~~~~~p~~~l~~~~ 160 (205)
T 4doo_A 132 SLFKDEYKIPRNSTIDLTKDPGHVLSVAI 160 (205)
T ss_dssp GGGTTCCCCCTTCEEEEEEETTTEEEEEE
T ss_pred HHhccCCCCCCCCEEEEEEcCCCcEEEEE
Confidence 35555678999999999999864333333
No 77
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=22.71 E-value=30 Score=26.53 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=23.0
Q ss_pred EEec-CcceEEEcCCCCCC-CCCCEEEEEe
Q 033108 99 IKLV-RGQNFFICNSAGHC-GSGMKIAINA 126 (127)
Q Consensus 99 v~L~-~G~~yFic~~~~hC-~~GmKl~I~V 126 (127)
++.+ ||.++|.|-...|. +.||.-.+.|
T Consensus 287 v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v 316 (333)
T 1mzy_A 287 YKFLQPGVYAYVNHNLIEAVHKGATAHVLV 316 (333)
T ss_dssp EECCSCEEEEEEESSHHHHHTTCCEEEEEE
T ss_pred EEcCCCEEEEEecChhhhHhhCCCEEEEEE
Confidence 4445 59999999998898 9999877766
No 78
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=22.08 E-value=73 Score=23.40 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.0
Q ss_pred CCeEEeCCEEEEEeCCCCCeE
Q 033108 52 GKRFKAGDTLVFNYDPTLHNV 72 (127)
Q Consensus 52 ~~~f~vGD~L~F~y~~~~h~V 72 (127)
.+.|..||++.|.|.++...+
T Consensus 135 ~~~~~~G~~I~~~~~p~~G~L 155 (208)
T 4dok_A 135 SKYFKANSVITYHFSAKDGIC 155 (208)
T ss_dssp TCEECTTCEEEEEECSSSCCE
T ss_pred cCCCCCCCEEEEEEeCCCCeE
Confidence 358999999999999865543
No 79
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=21.06 E-value=33 Score=26.26 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=22.8
Q ss_pred EEec-CcceEEEcCCCCCC-CCCCEEEEEe
Q 033108 99 IKLV-RGQNFFICNSAGHC-GSGMKIAINA 126 (127)
Q Consensus 99 v~L~-~G~~yFic~~~~hC-~~GmKl~I~V 126 (127)
++.+ +|.++|.|....|+ ..||...+.|
T Consensus 287 v~~~~pG~y~~~~h~~~~~~~~G~~~~~~V 316 (336)
T 1oe1_A 287 YTFKQPGVYAYLNHNLIEAFELGAAGHIKV 316 (336)
T ss_dssp EECCSCEEEEEEESSHHHHHTTSCEEEEEE
T ss_pred EEcCCCceEEEEechhhccccCCCeEEEEE
Confidence 4445 59999999988888 8999888776
Done!