BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033109
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 25 LEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLL 84
L+ + LAS VV+FS + C C+ VK+L +G + V ELDE G ++ AL
Sbjct: 10 LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 69
Query: 85 GTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGA 124
G VP VFIGGK +G D V+ H L+PLL++A A
Sbjct: 70 GRG-TVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 108
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 25 LEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLL 84
L+ + LAS VV+FS + C C+ VK+L +G + V ELDE G ++ AL
Sbjct: 11 LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 70
Query: 85 GTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGA 124
G VP VFIGGK +G D V+ H L+PLL++A A
Sbjct: 71 GRG-TVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 109
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 11 SYMPSSRGALGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDED 70
S SS L P+ I+ S+N VVIFS +SC C K+LF M VN V ELD
Sbjct: 25 SNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLL 84
Query: 71 PKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKE 121
G + AL ++ G VP +F+ G +G H G L+PL+ +
Sbjct: 85 EYGNQFQDALYKMTG-ERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 134
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 20 LGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKA 79
L P+ I+ S+N VVIFS +SC C K+LF M VN V ELD G + A
Sbjct: 12 LATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDA 71
Query: 80 LMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKE 121
L ++ G VP +F+ G +G H G L+PL+ +
Sbjct: 72 LYKMTG-ERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 112
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 24 PLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRL 83
P+ I+ S+N VVIFS +SC C K+LF M VN V ELD G + AL ++
Sbjct: 24 PVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKM 83
Query: 84 LGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKE 121
G VP +F+ G +G H G L+PL+ +
Sbjct: 84 TG-ERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 120
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 28 IERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDE-DPKGKDMEKALMRLLGT 86
+++ +EN VV++S + C VK LF + V+P V ELDE +G ++K L RL G
Sbjct: 11 VKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQ 70
Query: 87 SPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGA 124
VP VFIGGK +G + + G L PLL EA A
Sbjct: 71 H-TVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 19 ALGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDE-DPKGKDME 77
+ G E I + +EN VVI+S + C C VK LF +GV P V ELD+ P+G ++
Sbjct: 3 SFGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQ 62
Query: 78 KALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGA 124
K L RL G VP VF+ GK +G + + G L +L EA
Sbjct: 63 KVLERLTG-QHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANG 108
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 27 HIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGT 86
H+ L + VVIFS S C VK LF +GV V ELD+ G +++ L +
Sbjct: 9 HLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSE-ITN 67
Query: 87 SPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKE 121
VP +F+ VG D+ ++ +G L LL+E
Sbjct: 68 QKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 102
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 28 IERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTS 87
+ + AV++FS ++C C VK + + ELD+ G ++K L
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLAS-FSKI 69
Query: 88 PAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEA 122
VP +F+ GK +G V+ + N L ++ E+
Sbjct: 70 ETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 28 IERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTS 87
+ + AV++FS ++C C VK + + ELD+ G ++K L
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLAS-FSKI 69
Query: 88 PAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEA 122
VP +F+ GK +G V+ + N L ++ E+
Sbjct: 70 ETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 28 IERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTS 87
+ + AV++FS ++C C VK + + ELD+ G ++K L
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLAS-FSKI 69
Query: 88 PAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEA 122
VP +F+ GK +G V+ + N L ++ E+
Sbjct: 70 ETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 23 DPLEHIERLASENAVVIFSISSCCMCH-AVKRLFCGMGVNPT---VYELDEDPKGKDMEK 78
+ ++H++ L +EN + + S + C CH A+ LF + V + V +L++ +G D++
Sbjct: 13 ETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQA 72
Query: 79 ALMRLLGTSPAVPVVFIGGKLVGSMD 104
AL + G VP ++I GK +G D
Sbjct: 73 ALYEINGQR-TVPNIYINGKHIGGND 97
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 13 MPSSRGALGGDPLEHIERLASENAVVIFSISSCCMCHA-VKRLFCGMGVNPT---VYELD 68
+P + + + H++ L + V + + + C C A + LF + V + V ELD
Sbjct: 15 VPRGSHMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELD 74
Query: 69 EDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLK 120
E G +++ AL + G VP V+I GK +G + NG L +LK
Sbjct: 75 EMSNGSEIQDALEEISGQK-TVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 27 HIERLASENAVVIFSISSCCMCHA-VKRLFCGMGVNPT---VYELDEDPKGKDMEKALMR 82
H++ L + V + + + C C A + LF + V + V ELDE G +++ AL
Sbjct: 9 HVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 68
Query: 83 LLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLK 120
+ G VP V+I GK +G + NG L +LK
Sbjct: 69 ISG-QKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 105
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG 96
V I++ +C CH K L GV + EL D E+ + R T+ VP +FI
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGV--SFQELPIDGNAAKREEMIKRSGRTT--VPQIFID 58
Query: 97 GKLVGSMDRVMASHINGTLVPLLK 120
+ +G D + A G L PLLK
Sbjct: 59 AQHIGGYDDLYALDARGGLDPLLK 82
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 23 DPLEHIERLASENAVVIFSISSCCMCH-AVKRLFCGMGVNPT---VYELDEDPKGKDMEK 78
+ ++H++ L +EN + + S + C H A+ LF + V + V +L++ +G D++
Sbjct: 5 ETIKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQA 64
Query: 79 ALMRLLGTSPAVPVVFIGGKLVGSMD 104
AL + G VP ++I GK +G D
Sbjct: 65 ALYEINGQR-TVPNIYINGKHIGGND 89
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 23 DPLEHIERLASENAVVIFSISSCCMCH-AVKRLFCGMGVNPT---VYELDEDPKGKDMEK 78
+ ++H++ L +EN + + S + C H A+ LF + V + V +L++ +G D++
Sbjct: 249 ETIKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQA 308
Query: 79 ALMRLLGTSPAVPVVFIGGKLVGSMD 104
AL + G VP ++I GK +G D
Sbjct: 309 ALYEINGQR-TVPNIYINGKHIGGND 333
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 26 EHIERLASENAVVIF-----SISSCCMCHAVKRLFCGMGV-NPTVYELDEDPKGKDMEKA 79
E ++ L ++ VV+F C +AV ++ GV + Y + +DP+ +
Sbjct: 11 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQG--- 67
Query: 80 LMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAG 123
++ P +P V++ G+ VG D ++ H NG LV LK+ G
Sbjct: 68 -IKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 110
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 27 HIERLASENAVVIFSISSCCMCHA-VKRLFCGMGVNPT---VYELDEDPKGKDMEKALMR 82
H++ L + V + + + C A + LF + V + V ELDE G +++ AL
Sbjct: 12 HVKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEE 71
Query: 83 LLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLK 120
+ G VP V+I GK +G + NG L +LK
Sbjct: 72 ISG-QKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 108
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG 96
V I++ +C H K L GV + EL D E+ + R T+ VP +FI
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGV--SFQELPIDGNAAKREEMIKRSGRTT--VPQIFID 58
Query: 97 GKLVGSMDRVMASHINGTLVPLLK 120
+ +G D + A G L PLLK
Sbjct: 59 AQHIGGYDDLYALDARGGLDPLLK 82
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 26 EHIERLASENAVVIF-----SISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKAL 80
E ++ L ++ +V++F + C + + GV +++ ED + + KA
Sbjct: 8 ERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAY 67
Query: 81 MRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLK 120
P P +++ G+LVG +D V NG L+P+L+
Sbjct: 68 ----SNWPTYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 17 RGALGGDPLEHIERLASENAVVIF-----SISSCCMCHAVKRLFCGMGVNPTVYELDEDP 71
RG+ +E I+R +EN ++++ + SC + G ++ ++P
Sbjct: 17 RGSHMSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNP 76
Query: 72 KGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGALW 126
D+ L + P P +++ G+LVG D V+ + G L L+KE A +
Sbjct: 77 ---DIRAELPKY-ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 127
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 43 SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGS 102
+ C + + GV +++ ED +++ + L + P P +++ G LVG
Sbjct: 28 AKCGFSKQILEILNSTGVEYETFDILED---EEVRQGL-KTFSNWPTYPQLYVRGDLVGG 83
Query: 103 MDRVMASHINGTLVPLLK 120
+D V NG L+P+LK
Sbjct: 84 LDIVKELKDNGELLPILK 101
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 25 LEHIERLASENAVVIF-----SISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKA 79
+E I+R +EN ++++ + SC + G ++ ++P D+
Sbjct: 5 IEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNP---DIRAE 61
Query: 80 LMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGALW 126
L + P P +++ G+LVG D V+ + G L L+KE A +
Sbjct: 62 LPKY-ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 107
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKD---MEKALMRLLGTSPAVPVV 93
VV+F +C C + L + + E + D ++ L +L G + VP V
Sbjct: 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG-ARTVPRV 72
Query: 94 FIGGKLVGSMDRVMASHINGTLVPLLKEAGAL 125
FIG + +G + + H G L+ L++ GA+
Sbjct: 73 FIGKECIGGCTDLESMHKRGELLTRLQQVGAV 104
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 34 ENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV 93
+ ++ IF+ C C K+L G++ +E G D +R + VP V
Sbjct: 169 QESISIFTKPGCPFCAKAKQLLHDKGLS-----FEEIILGHDATIVSVRAVSGRTTVPQV 223
Query: 94 FIGGKLVGSMD 104
FIGGK +G D
Sbjct: 224 FIGGKHIGGSD 234
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYE---LDEDPKGKDMEKALMRLLGTSPAVPVV 93
VV+F +C C + + + + + E + +++ L +L G VP V
Sbjct: 15 VVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGAR-TVPRV 73
Query: 94 FIGGKLVGSMDRVMASHINGTLVPLLKEAGALW 126
FIG +G +++ +G L+ LK+ GAL
Sbjct: 74 FIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ 106
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYE---LDEDPKGKDMEKALMRLLGTSPAVPVV 93
VV+F +C + + + + + E + +++ L +L G VP V
Sbjct: 14 VVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGAR-TVPRV 72
Query: 94 FIGGKLVGSMDRVMASHINGTLVPLLKEAGALW 126
FIG +G +++ +G L+ LK+ GAL
Sbjct: 73 FIGKDSIGGSSDLVSLQQSGELLTRLKQIGALQ 105
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDE-DPKGKDMEKALMRLLGTSPAVPVVFI 95
V+I++ C C K L G E +E D +A M+ P +FI
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGA-----EFNEIDASATPELRAEMQERSGRNTFPQIFI 62
Query: 96 GGKLVGSMDRVMASHINGTLVPLLK 120
G VG D + A G L LLK
Sbjct: 63 GSVHVGGCDDLYALEDEGKLDSLLK 87
>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase
pdb|3LSQ|B Chain B, Trypanosoma Brucei Seryl-Trna Synthetase
pdb|3LSS|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase In Complex With
Atp
pdb|3LSS|B Chain B, Trypanosoma Brucei Seryl-Trna Synthetase In Complex With
Atp
Length = 484
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 3 YQTESWSCSYMPSSRGALGGDPLEHIERLASENAVVIFSISSCCMCH 49
YQ++S +C Y P+ RG + E+ L + + + CC+C
Sbjct: 399 YQSQSVNCRYGPNLRGTAAQNVKEYCHML--NGTLCAITRTMCCICE 443
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG 96
+ I++ S+C C L GV Y +D D + +A+ ++P +FI
Sbjct: 18 IEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGD---NEAREAMAARANGKRSLPQIFID 74
Query: 97 GKLVGSMDRVMASHINGTLVPLL 119
+ +G D + A G L PLL
Sbjct: 75 DQHIGGCDDIYALDGAGKLDPLL 97
>pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseiflexus Sp.
pdb|3U9I|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseiflexus Sp
Length = 393
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 53 RLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPV 92
RL +GV+ V L E P KD E+ L RL T VPV
Sbjct: 235 RLLDMLGVHGIVPALFEQPVAKDDEEGLRRLTATR-RVPV 273
>pdb|3EIV|A Chain A, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
pdb|3EIV|B Chain B, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
pdb|3EIV|C Chain C, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
pdb|3EIV|D Chain D, Crystal Structure Of Single-Stranded Dna-Binding Protein
From Streptomyces Coelicolor
Length = 199
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 59 GVNPTVYELDEDPKGKDMEKALMRLLGTS 87
GV TVYELD D G + A ++ TS
Sbjct: 93 GVKRTVYELDVDEVGASLRSATAKVTKTS 121
>pdb|2Z6I|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
pdb|2Z6I|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk)
Length = 332
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 22 GDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPK--GKDMEKA 79
G+P ++ ER +VI + S + +++ G + + E E GK
Sbjct: 97 GNPSKYXERFHEAGIIVIPVVPSVALAKRXEKI----GADAVIAEGXEAGGHIGKLTTXT 152
Query: 80 LMRLLGTSPAVPVVFIGG 97
L+R + T+ ++PV+ GG
Sbjct: 153 LVRQVATAISIPVIAAGG 170
>pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
pdb|2Z6J|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
Length = 332
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 22 GDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPK--GKDMEKA 79
G+P +++ER +VI + S + ++++ G + + E E GK
Sbjct: 97 GNPSKYMERFHEAGIIVIPVVPSVALAKRMEKI----GADAVIAEGMEAGGHIGKLTTMT 152
Query: 80 LMRLLGTSPAVPVVFIGG 97
L+R + T+ ++PV+ GG
Sbjct: 153 LVRQVATAISIPVIAAGG 170
>pdb|3NZN|A Chain A, The Crystal Structure Of The Glutaredoxin From
Methanosarcina Mazei Go1
pdb|3NZN|B Chain B, The Crystal Structure Of The Glutaredoxin From
Methanosarcina Mazei Go1
Length = 103
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 37 VVIFSISSCCMCHAVKRLFCGMGVN 61
V+++ +S+C C K+L +GV+
Sbjct: 24 VIMYGLSTCVWCKKTKKLLTDLGVD 48
>pdb|2OHH|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHH|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHH|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHH|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Active Oxidized State
pdb|2OHI|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|G Chain G, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|H Chain H, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|I Chain I, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHI|J Chain J, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Reduced State
pdb|2OHJ|A Chain A, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
pdb|2OHJ|B Chain B, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
pdb|2OHJ|D Chain D, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
pdb|2OHJ|E Chain E, Crystal Structure Of Coenzyme F420h2 Oxidase (Fpra), A
Diiron Flavoprotein, Inactive Oxidized State
Length = 404
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 16 SRGALGGDPLEHIER-------LASENAVVIFSI---SSCCMCHAVKRLFCGMGVNPTVY 65
S G + DP++ IE + E VI+ S+ M HA+ GV+ VY
Sbjct: 232 SHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVY 291
Query: 66 ELDEDPKGK 74
L ED + +
Sbjct: 292 CLHEDDRSE 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,952,213
Number of Sequences: 62578
Number of extensions: 147643
Number of successful extensions: 335
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 50
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)