Query 033109
Match_columns 127
No_of_seqs 132 out of 1165
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 2.4E-32 5.2E-37 177.3 11.7 98 29-127 2-99 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 4.5E-31 9.8E-36 173.7 13.1 101 25-126 3-106 (108)
3 KOG1752 Glutaredoxin and relat 100.0 2.4E-30 5.3E-35 168.6 12.8 102 24-126 3-104 (104)
4 PRK10824 glutaredoxin-4; Provi 100.0 4.3E-30 9.2E-35 170.3 11.3 100 23-126 3-107 (115)
5 TIGR00365 monothiol glutaredox 99.9 4.8E-27 1E-31 151.9 10.7 91 25-119 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.9 2.2E-25 4.8E-30 142.2 10.2 85 28-116 1-90 (90)
7 PTZ00062 glutaredoxin; Provisi 99.9 2E-24 4.4E-29 156.0 10.6 96 22-121 100-200 (204)
8 PRK10638 glutaredoxin 3; Provi 99.9 4.2E-24 9.1E-29 134.1 9.9 83 34-120 1-83 (83)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 9.4E-24 2E-28 131.0 8.8 79 37-119 1-79 (79)
10 TIGR02180 GRX_euk Glutaredoxin 99.9 3.4E-23 7.3E-28 129.1 9.9 82 37-119 1-84 (84)
11 cd03419 GRX_GRXh_1_2_like Glut 99.9 9.9E-23 2.1E-27 126.7 10.1 82 36-118 1-82 (82)
12 cd03031 GRX_GRX_like Glutaredo 99.9 1.2E-22 2.6E-27 140.0 10.1 84 36-122 1-93 (147)
13 COG0278 Glutaredoxin-related p 99.9 2.5E-22 5.3E-27 128.2 9.8 98 22-123 2-105 (105)
14 COG0695 GrxC Glutaredoxin and 99.9 3.3E-22 7.2E-27 125.0 9.5 78 36-115 2-79 (80)
15 cd03418 GRX_GRXb_1_3_like Glut 99.9 1.2E-21 2.6E-26 120.0 10.3 75 36-113 1-75 (75)
16 TIGR02190 GlrX-dom Glutaredoxi 99.9 3.5E-21 7.5E-26 119.9 8.9 75 31-110 4-78 (79)
17 cd03027 GRX_DEP Glutaredoxin ( 99.9 3.6E-21 7.7E-26 117.9 8.4 72 35-110 1-72 (73)
18 cd03029 GRX_hybridPRX5 Glutare 99.8 1E-20 2.2E-25 115.5 8.9 70 36-110 2-71 (72)
19 PRK12759 bifunctional gluaredo 99.8 4.7E-20 1E-24 145.5 10.2 89 34-125 1-94 (410)
20 TIGR02183 GRXA Glutaredoxin, G 99.8 6.3E-20 1.4E-24 116.0 8.6 74 37-113 2-81 (86)
21 PRK11200 grxA glutaredoxin 1; 99.8 1.4E-19 3E-24 113.9 8.8 74 36-112 2-81 (85)
22 cd02066 GRX_family Glutaredoxi 99.8 1.2E-18 2.6E-23 104.5 8.7 71 36-110 1-71 (72)
23 KOG0911 Glutaredoxin-related p 99.8 2.4E-18 5.2E-23 124.3 9.7 95 24-122 128-227 (227)
24 cd03030 GRX_SH3BGR Glutaredoxi 99.8 6.1E-18 1.3E-22 108.2 9.1 81 37-120 2-91 (92)
25 PF00462 Glutaredoxin: Glutare 99.8 5.2E-18 1.1E-22 100.1 7.6 60 37-100 1-60 (60)
26 TIGR02194 GlrX_NrdH Glutaredox 99.7 1.6E-16 3.5E-21 97.0 6.7 64 37-105 1-65 (72)
27 PRK10329 glutaredoxin-like pro 99.7 3.2E-16 6.8E-21 98.1 7.7 64 36-104 2-65 (81)
28 TIGR02196 GlrX_YruB Glutaredox 99.5 3.4E-14 7.5E-19 85.5 7.7 66 36-105 1-66 (74)
29 KOG2824 Glutaredoxin-related p 99.5 2E-14 4.3E-19 106.7 7.5 95 25-122 118-224 (281)
30 cd02976 NrdH NrdH-redoxin (Nrd 99.5 3.4E-13 7.4E-18 80.9 8.0 66 36-105 1-66 (73)
31 cd02973 TRX_GRX_like Thioredox 99.4 6.2E-13 1.3E-17 79.5 6.1 58 36-101 2-64 (67)
32 TIGR02200 GlrX_actino Glutared 99.4 1.4E-12 3.1E-17 79.4 7.2 65 36-104 1-67 (77)
33 PF04908 SH3BGR: SH3-binding, 99.3 3.4E-11 7.4E-16 77.9 8.1 82 36-120 2-97 (99)
34 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 4E-10 8.6E-15 71.6 7.1 70 24-101 3-77 (89)
35 cd00570 GST_N_family Glutathio 99.1 9.8E-10 2.1E-14 64.5 8.0 68 38-109 2-69 (71)
36 cd03041 GST_N_2GST_N GST_N fam 99.0 2E-09 4.4E-14 66.2 8.3 71 37-111 2-74 (77)
37 TIGR00411 redox_disulf_1 small 99.0 6.5E-09 1.4E-13 63.9 8.2 62 36-103 2-68 (82)
38 cd03037 GST_N_GRX2 GST_N famil 99.0 6.2E-09 1.3E-13 62.7 7.7 68 38-111 2-70 (71)
39 cd03040 GST_N_mPGES2 GST_N fam 99.0 7E-09 1.5E-13 63.4 8.0 68 36-110 1-72 (77)
40 cd03060 GST_N_Omega_like GST_N 98.9 2.4E-08 5.3E-13 60.2 8.8 67 38-109 2-69 (71)
41 PHA02125 thioredoxin-like prot 98.9 1.3E-08 2.8E-13 62.3 7.1 56 37-101 2-57 (75)
42 cd03059 GST_N_SspA GST_N famil 98.9 3.4E-08 7.4E-13 59.4 8.6 69 37-110 1-69 (73)
43 cd03036 ArsC_like Arsenate Red 98.8 9.1E-09 2E-13 67.8 5.9 39 37-75 1-39 (111)
44 cd02977 ArsC_family Arsenate R 98.8 1.2E-08 2.5E-13 66.4 6.2 39 37-75 1-39 (105)
45 cd03055 GST_N_Omega GST_N fami 98.8 7.8E-08 1.7E-12 60.7 9.1 71 34-109 16-87 (89)
46 TIGR00412 redox_disulf_2 small 98.8 2.2E-08 4.9E-13 61.5 5.8 54 37-100 3-60 (76)
47 PRK01655 spxA transcriptional 98.7 3.4E-08 7.4E-13 66.9 6.5 39 37-75 2-40 (131)
48 PF05768 DUF836: Glutaredoxin- 98.7 9.7E-08 2.1E-12 59.4 8.0 53 36-97 1-57 (81)
49 cd03051 GST_N_GTT2_like GST_N 98.7 6.5E-08 1.4E-12 58.1 6.8 70 38-109 2-72 (74)
50 TIGR01295 PedC_BrcD bacterioci 98.7 9E-08 2E-12 64.0 8.0 79 24-103 12-106 (122)
51 TIGR01617 arsC_related transcr 98.7 4.3E-08 9.2E-13 65.1 5.9 49 37-85 1-49 (117)
52 cd02975 PfPDO_like_N Pyrococcu 98.7 7.6E-08 1.6E-12 63.4 6.5 57 31-95 19-81 (113)
53 cd03045 GST_N_Delta_Epsilon GS 98.7 2.2E-07 4.7E-12 56.1 7.8 71 37-109 1-71 (74)
54 PF13417 GST_N_3: Glutathione 98.7 2.6E-07 5.7E-12 56.3 7.9 67 39-110 1-67 (75)
55 cd03032 ArsC_Spx Arsenate Redu 98.6 1.4E-07 3E-12 62.5 6.6 48 37-84 2-49 (115)
56 PRK13344 spxA transcriptional 98.6 1.4E-07 3.1E-12 64.0 6.6 40 37-76 2-41 (132)
57 cd03035 ArsC_Yffb Arsenate Red 98.6 1.3E-07 2.9E-12 61.7 6.1 49 37-85 1-49 (105)
58 PRK12559 transcriptional regul 98.6 1.6E-07 3.5E-12 63.7 6.6 39 37-75 2-40 (131)
59 PRK15317 alkyl hydroperoxide r 98.6 1.3E-07 2.8E-12 76.8 7.0 79 15-101 98-181 (517)
60 cd02954 DIM1 Dim1 family; Dim1 98.6 3.7E-07 8.1E-12 60.5 7.9 67 27-101 4-82 (114)
61 TIGR02187 GlrX_arch Glutaredox 98.6 1.8E-07 4E-12 68.0 6.9 71 19-97 119-194 (215)
62 cd03056 GST_N_4 GST_N family, 98.6 6E-07 1.3E-11 53.8 7.9 71 37-109 1-71 (73)
63 TIGR03140 AhpF alkyl hydropero 98.6 2E-07 4.2E-12 75.8 7.4 78 16-101 100-182 (515)
64 PHA02278 thioredoxin-like prot 98.5 1.2E-06 2.5E-11 57.1 8.7 71 26-100 5-85 (103)
65 cd02985 TRX_CDSP32 TRX family, 98.5 1.3E-06 2.8E-11 56.4 8.1 71 25-100 3-84 (103)
66 TIGR03143 AhpF_homolog putativ 98.5 3.8E-07 8.2E-12 74.8 6.9 76 17-100 460-540 (555)
67 KOG0910 Thioredoxin-like prote 98.5 5.5E-07 1.2E-11 62.0 6.2 90 22-122 48-147 (150)
68 cd02953 DsbDgamma DsbD gamma f 98.5 1E-06 2.2E-11 56.6 7.2 65 27-95 3-78 (104)
69 cd02949 TRX_NTR TRX domain, no 98.5 1.1E-06 2.4E-11 55.9 7.3 57 37-101 17-81 (97)
70 KOG3029 Glutathione S-transfer 98.5 7.5E-07 1.6E-11 67.1 7.3 69 35-110 89-157 (370)
71 cd03033 ArsC_15kD Arsenate Red 98.5 7.5E-07 1.6E-11 59.0 6.5 40 36-75 1-40 (113)
72 cd02989 Phd_like_TxnDC9 Phosdu 98.4 1.9E-06 4E-11 56.8 7.4 70 26-103 13-91 (113)
73 cd03058 GST_N_Tau GST_N family 98.4 5.9E-06 1.3E-10 49.9 8.7 70 37-110 1-70 (74)
74 cd03054 GST_N_Metaxin GST_N fa 98.4 3.6E-06 7.9E-11 50.6 7.6 57 43-111 14-70 (72)
75 COG3118 Thioredoxin domain-con 98.4 1E-06 2.2E-11 66.7 6.2 64 33-104 42-114 (304)
76 PF00085 Thioredoxin: Thioredo 98.4 6.8E-07 1.5E-11 56.6 4.3 68 28-101 9-85 (103)
77 PF13192 Thioredoxin_3: Thiore 98.3 1.4E-06 3E-11 53.4 5.3 54 36-99 2-59 (76)
78 cd03053 GST_N_Phi GST_N family 98.3 9.1E-06 2E-10 49.2 8.6 72 37-110 2-73 (76)
79 cd02994 PDI_a_TMX PDIa family, 98.3 2.9E-06 6.3E-11 54.1 6.6 65 26-98 9-82 (101)
80 PTZ00051 thioredoxin; Provisio 98.3 6.7E-06 1.5E-10 52.0 8.1 70 25-102 8-86 (98)
81 cd02962 TMX2 TMX2 family; comp 98.3 5.1E-06 1.1E-10 57.7 7.9 70 25-102 35-123 (152)
82 cd02948 TRX_NDPK TRX domain, T 98.3 8.7E-06 1.9E-10 52.4 8.1 69 25-100 7-84 (102)
83 cd03061 GST_N_CLIC GST_N famil 98.3 8.6E-06 1.9E-10 51.9 7.8 63 43-110 20-82 (91)
84 cd02947 TRX_family TRX family; 98.3 9E-06 2E-10 49.6 7.8 56 37-100 14-76 (93)
85 cd02957 Phd_like Phosducin (Ph 98.3 1.2E-05 2.6E-10 52.6 8.6 62 37-107 28-96 (113)
86 cd03052 GST_N_GDAP1 GST_N fami 98.2 1.5E-05 3.3E-10 48.4 8.4 71 37-109 1-71 (73)
87 cd02959 ERp19 Endoplasmic reti 98.2 4.3E-06 9.3E-11 55.5 6.2 73 23-101 7-91 (117)
88 PRK09381 trxA thioredoxin; Pro 98.2 4.4E-06 9.5E-11 54.0 6.1 58 37-102 25-90 (109)
89 cd03049 GST_N_3 GST_N family, 98.2 1.2E-05 2.6E-10 48.3 7.6 67 38-109 2-71 (73)
90 COG1393 ArsC Arsenate reductas 98.2 7.4E-06 1.6E-10 54.5 6.8 50 36-85 2-51 (117)
91 PRK10996 thioredoxin 2; Provis 98.2 6.9E-06 1.5E-10 55.9 6.7 71 24-100 41-119 (139)
92 cd02963 TRX_DnaJ TRX domain, D 98.2 4.5E-06 9.8E-11 54.6 5.6 56 37-100 28-92 (111)
93 cd02951 SoxW SoxW family; SoxW 98.2 1.4E-05 3.1E-10 52.9 7.9 72 24-96 2-92 (125)
94 cd03076 GST_N_Pi GST_N family, 98.2 3E-05 6.4E-10 46.9 8.7 70 36-110 1-70 (73)
95 cd03003 PDI_a_ERdj5_N PDIa fam 98.2 8.3E-06 1.8E-10 52.1 6.5 64 27-98 10-83 (101)
96 TIGR00014 arsC arsenate reduct 98.2 6.5E-06 1.4E-10 54.4 6.1 49 37-85 1-49 (114)
97 TIGR02187 GlrX_arch Glutaredox 98.2 2.1E-05 4.6E-10 57.1 9.3 62 33-100 19-90 (215)
98 cd03034 ArsC_ArsC Arsenate Red 98.2 7E-06 1.5E-10 54.1 6.1 49 37-85 1-49 (112)
99 cd02996 PDI_a_ERp44 PDIa famil 98.2 1.1E-05 2.3E-10 52.2 6.9 65 26-98 9-89 (108)
100 PRK10026 arsenate reductase; P 98.2 9.7E-06 2.1E-10 55.6 6.9 51 35-85 2-52 (141)
101 cd02986 DLP Dim1 family, Dim1- 98.2 1.2E-05 2.5E-10 53.3 6.8 59 34-100 14-81 (114)
102 cd02987 Phd_like_Phd Phosducin 98.1 1.2E-05 2.5E-10 57.1 7.3 79 36-123 85-175 (175)
103 cd03042 GST_N_Zeta GST_N famil 98.1 2E-05 4.4E-10 47.0 7.1 70 38-109 2-71 (73)
104 PLN00410 U5 snRNP protein, DIM 98.1 1.6E-05 3.5E-10 54.6 7.2 67 25-98 11-89 (142)
105 PF13098 Thioredoxin_2: Thiore 98.1 1.9E-05 4.2E-10 51.0 6.8 72 36-108 8-107 (112)
106 cd02984 TRX_PICOT TRX domain, 98.1 3.4E-05 7.4E-10 48.5 7.8 68 27-100 4-81 (97)
107 PRK10853 putative reductase; P 98.1 1.4E-05 3E-10 53.3 6.1 39 37-75 2-40 (118)
108 TIGR01616 nitro_assoc nitrogen 98.1 1.8E-05 3.9E-10 53.3 6.7 39 36-74 2-40 (126)
109 cd03000 PDI_a_TMX3 PDIa family 98.1 2.4E-05 5.2E-10 50.2 6.9 66 24-95 5-78 (104)
110 cd02956 ybbN ybbN protein fami 98.0 8.2E-05 1.8E-09 46.8 9.1 58 37-100 16-79 (96)
111 cd03005 PDI_a_ERp46 PDIa famil 98.0 1.7E-05 3.7E-10 50.2 6.0 68 27-100 9-86 (102)
112 TIGR01068 thioredoxin thioredo 98.0 6.1E-05 1.3E-09 47.2 8.4 56 37-100 18-81 (101)
113 PF13409 GST_N_2: Glutathione 98.0 1.4E-05 3E-10 48.1 5.0 67 44-111 1-68 (70)
114 cd02965 HyaE HyaE family; HyaE 98.0 3.7E-05 8E-10 50.7 7.3 61 35-103 29-99 (111)
115 PRK10877 protein disulfide iso 98.0 3.3E-05 7.2E-10 57.0 7.9 71 36-107 110-221 (232)
116 cd02952 TRP14_like Human TRX-r 98.0 2.4E-05 5.1E-10 52.3 6.4 70 26-95 10-96 (119)
117 cd01659 TRX_superfamily Thiore 98.0 1.9E-05 4.1E-10 44.1 5.2 56 37-97 1-61 (69)
118 cd02950 TxlA TRX-like protein 98.0 6.6E-05 1.4E-09 51.3 8.5 67 28-100 13-90 (142)
119 cd03004 PDI_a_ERdj5_C PDIa fam 98.0 3.9E-05 8.5E-10 49.0 7.0 63 27-97 10-83 (104)
120 cd03080 GST_N_Metaxin_like GST 98.0 6.8E-05 1.5E-09 45.5 7.4 62 37-110 2-70 (75)
121 cd03039 GST_N_Sigma_like GST_N 98.0 6.8E-05 1.5E-09 44.9 7.3 69 38-110 2-70 (72)
122 cd03002 PDI_a_MPD1_like PDI fa 98.0 6E-05 1.3E-09 48.4 7.4 53 37-95 22-80 (109)
123 cd02999 PDI_a_ERp44_like PDIa 97.9 2.5E-05 5.3E-10 50.3 5.4 54 37-95 22-78 (100)
124 KOG0907 Thioredoxin [Posttrans 97.9 7.4E-05 1.6E-09 48.9 7.6 55 36-98 23-85 (106)
125 cd03048 GST_N_Ure2p_like GST_N 97.9 0.00014 3.1E-09 44.5 8.5 71 37-110 2-75 (81)
126 cd03038 GST_N_etherase_LigE GS 97.9 3.3E-05 7.3E-10 47.8 5.6 66 43-111 14-80 (84)
127 COG4545 Glutaredoxin-related p 97.9 5.6E-05 1.2E-09 46.3 6.3 66 38-106 5-81 (85)
128 cd02955 SSP411 TRX domain, SSP 97.9 0.00019 4.2E-09 48.2 9.5 74 26-100 6-94 (124)
129 TIGR02182 GRXB Glutaredoxin, G 97.9 5.7E-05 1.2E-09 54.5 7.3 69 38-112 1-70 (209)
130 TIGR02738 TrbB type-F conjugat 97.9 8.1E-05 1.7E-09 51.7 7.5 40 31-70 48-91 (153)
131 PRK09481 sspA stringent starva 97.9 0.00014 3E-09 52.4 9.0 70 36-110 10-79 (211)
132 KOG4023 Uncharacterized conser 97.9 2.4E-05 5.2E-10 50.2 4.1 85 36-121 3-98 (108)
133 PRK10387 glutaredoxin 2; Provi 97.9 8.2E-05 1.8E-09 53.1 7.5 70 37-112 1-71 (210)
134 cd02988 Phd_like_VIAF Phosduci 97.9 7.8E-05 1.7E-09 53.6 7.2 90 25-123 90-192 (192)
135 cd03001 PDI_a_P5 PDIa family, 97.8 0.00011 2.3E-09 46.5 7.0 63 27-95 9-78 (103)
136 cd02993 PDI_a_APS_reductase PD 97.8 0.00018 3.9E-09 46.7 8.1 54 37-94 25-83 (109)
137 cd02997 PDI_a_PDIR PDIa family 97.8 0.00011 2.3E-09 46.6 6.8 70 27-100 9-88 (104)
138 cd02961 PDI_a_family Protein D 97.8 0.00025 5.5E-09 43.9 8.3 64 26-95 6-77 (101)
139 TIGR01126 pdi_dom protein disu 97.8 8E-05 1.7E-09 46.9 6.0 62 28-95 6-75 (102)
140 cd03050 GST_N_Theta GST_N fami 97.8 0.0003 6.6E-09 42.5 8.0 72 37-110 1-72 (76)
141 cd03044 GST_N_EF1Bgamma GST_N 97.8 0.00016 3.5E-09 43.7 6.8 69 38-109 2-71 (75)
142 cd03006 PDI_a_EFP1_N PDIa fami 97.8 7.7E-05 1.7E-09 49.3 5.4 59 32-98 26-95 (113)
143 PTZ00443 Thioredoxin domain-co 97.7 0.00019 4.1E-09 52.8 7.9 58 37-100 56-119 (224)
144 PF13728 TraF: F plasmid trans 97.7 0.00019 4.1E-09 52.5 7.7 73 22-95 109-189 (215)
145 cd03065 PDI_b_Calsequestrin_N 97.7 0.00016 3.5E-09 48.3 6.7 69 25-101 16-101 (120)
146 TIGR02740 TraF-like TraF-like 97.7 0.00015 3.3E-09 54.7 7.3 67 28-95 161-235 (271)
147 cd02998 PDI_a_ERp38 PDIa famil 97.7 0.00014 3E-09 46.0 5.9 54 37-95 22-81 (105)
148 PF03960 ArsC: ArsC family; I 97.6 0.00014 3.1E-09 47.5 5.4 46 40-85 1-46 (110)
149 PF14595 Thioredoxin_9: Thiore 97.6 1.2E-05 2.6E-10 54.3 0.1 75 22-101 30-112 (129)
150 cd03020 DsbA_DsbC_DsbG DsbA fa 97.6 0.00044 9.5E-09 49.5 8.0 72 34-106 78-190 (197)
151 cd03047 GST_N_2 GST_N family, 97.6 0.00067 1.4E-08 40.7 7.7 70 38-109 2-71 (73)
152 PRK13728 conjugal transfer pro 97.6 0.00043 9.3E-09 49.4 7.1 63 36-98 72-148 (181)
153 cd02992 PDI_a_QSOX PDIa family 97.5 0.00052 1.1E-08 45.1 7.1 65 27-95 10-84 (114)
154 TIGR00862 O-ClC intracellular 97.5 0.0012 2.5E-08 49.0 9.6 64 43-111 17-80 (236)
155 PTZ00062 glutaredoxin; Provisi 97.5 0.00045 9.8E-09 50.2 7.2 66 24-103 5-78 (204)
156 PF13899 Thioredoxin_7: Thiore 97.5 0.00044 9.4E-09 42.6 6.1 66 23-95 5-79 (82)
157 cd03057 GST_N_Beta GST_N famil 97.5 0.00077 1.7E-08 40.7 7.1 70 38-110 2-72 (77)
158 KOG0406 Glutathione S-transfer 97.5 0.0011 2.4E-08 48.9 8.6 73 35-111 8-80 (231)
159 TIGR02739 TraF type-F conjugat 97.4 0.00066 1.4E-08 50.9 7.3 71 24-95 141-219 (256)
160 PRK15113 glutathione S-transfe 97.4 0.0012 2.7E-08 47.5 8.5 74 34-109 3-78 (214)
161 cd03046 GST_N_GTT1_like GST_N 97.4 0.0021 4.6E-08 38.4 7.8 70 38-110 2-71 (76)
162 cd03009 TryX_like_TryX_NRX Try 97.4 0.0026 5.7E-08 42.2 8.7 63 37-100 22-113 (131)
163 cd03043 GST_N_1 GST_N family, 97.3 0.0027 5.8E-08 38.2 7.4 65 42-109 7-71 (73)
164 PRK13703 conjugal pilus assemb 97.2 0.0016 3.5E-08 48.6 7.3 71 24-95 134-212 (248)
165 PLN02378 glutathione S-transfe 97.2 0.0029 6.3E-08 45.7 7.8 64 43-111 18-81 (213)
166 cd02964 TryX_like_family Trypa 97.1 0.0034 7.3E-08 41.9 7.5 21 37-57 21-41 (132)
167 PLN02817 glutathione dehydroge 97.1 0.003 6.6E-08 47.5 8.0 64 42-110 70-133 (265)
168 TIGR01262 maiA maleylacetoacet 97.1 0.0013 2.8E-08 46.9 5.7 71 39-110 2-72 (210)
169 cd02995 PDI_a_PDI_a'_C PDIa fa 97.1 0.00057 1.2E-08 43.1 3.5 62 27-95 9-79 (104)
170 TIGR00424 APS_reduc 5'-adenyly 97.1 0.0025 5.3E-08 51.6 7.8 66 26-97 359-438 (463)
171 PRK15412 thiol:disulfide inter 97.1 0.005 1.1E-07 43.6 8.6 22 37-58 72-93 (185)
172 PLN02473 glutathione S-transfe 97.1 0.006 1.3E-07 43.7 8.8 72 37-110 3-74 (214)
173 PTZ00102 disulphide isomerase; 97.1 0.0023 4.9E-08 51.2 7.0 68 25-98 39-117 (477)
174 TIGR01130 ER_PDI_fam protein d 97.0 0.0025 5.4E-08 50.4 6.9 68 26-99 9-87 (462)
175 PF07315 DUF1462: Protein of u 97.0 0.0064 1.4E-07 38.4 7.2 72 38-109 1-88 (93)
176 cd03023 DsbA_Com1_like DsbA fa 97.0 0.0076 1.7E-07 40.4 8.0 24 34-57 6-29 (154)
177 cd02972 DsbA_family DsbA famil 97.0 0.0042 9.2E-08 38.0 6.2 60 37-97 1-91 (98)
178 PRK00293 dipZ thiol:disulfide 97.0 0.0038 8.3E-08 51.7 7.6 61 35-99 475-547 (571)
179 cd03077 GST_N_Alpha GST_N fami 96.9 0.004 8.7E-08 38.1 5.8 68 37-109 2-71 (79)
180 PRK11657 dsbG disulfide isomer 96.9 0.0056 1.2E-07 45.7 7.5 31 36-66 120-154 (251)
181 cd03010 TlpA_like_DsbE TlpA-li 96.8 0.01 2.3E-07 39.0 7.6 22 37-58 29-50 (127)
182 PLN02309 5'-adenylylsulfate re 96.8 0.008 1.7E-07 48.6 8.2 65 25-95 352-428 (457)
183 cd03007 PDI_a_ERp29_N PDIa fam 96.8 0.015 3.1E-07 38.7 8.1 69 27-98 10-91 (116)
184 cd02982 PDI_b'_family Protein 96.8 0.0023 5E-08 40.4 4.1 53 36-95 15-74 (103)
185 PF13905 Thioredoxin_8: Thiore 96.7 0.0048 1E-07 38.5 5.1 46 37-82 5-56 (95)
186 KOG2501 Thioredoxin, nucleored 96.7 0.0028 6.2E-08 44.1 4.3 56 27-82 26-89 (157)
187 COG4837 Uncharacterized protei 96.7 0.019 4.1E-07 36.7 7.5 77 33-109 3-95 (106)
188 PF06764 DUF1223: Protein of u 96.7 0.0098 2.1E-07 43.2 6.9 68 37-104 2-86 (202)
189 KOG1422 Intracellular Cl- chan 96.6 0.014 3E-07 42.5 7.3 61 44-109 20-80 (221)
190 cd03078 GST_N_Metaxin1_like GS 96.6 0.012 2.5E-07 35.7 6.0 57 43-111 14-70 (73)
191 KOG0190 Protein disulfide isom 96.6 0.0073 1.6E-07 49.2 6.4 70 24-99 31-111 (493)
192 cd02966 TlpA_like_family TlpA- 96.5 0.0088 1.9E-07 37.5 5.5 25 34-58 20-44 (116)
193 COG2143 Thioredoxin-related pr 96.5 0.013 2.8E-07 41.0 6.5 75 26-101 33-130 (182)
194 PRK10357 putative glutathione 96.5 0.012 2.7E-07 41.7 6.7 68 38-110 2-70 (202)
195 cd02958 UAS UAS family; UAS is 96.5 0.013 2.7E-07 38.2 6.3 74 22-100 4-91 (114)
196 TIGR02661 MauD methylamine deh 96.5 0.018 3.9E-07 41.0 7.4 30 37-66 78-111 (189)
197 cd03008 TryX_like_RdCVF Trypar 96.5 0.016 3.5E-07 39.9 6.7 25 33-57 24-49 (146)
198 COG0625 Gst Glutathione S-tran 96.4 0.012 2.7E-07 42.1 6.2 71 38-111 2-73 (211)
199 KOG4244 Failed axon connection 96.3 0.017 3.7E-07 43.5 6.7 84 11-109 23-113 (281)
200 PRK03147 thiol-disulfide oxido 96.3 0.029 6.3E-07 38.6 7.6 64 36-100 64-152 (173)
201 KOG0908 Thioredoxin-like prote 96.3 0.0096 2.1E-07 44.6 5.0 56 37-100 25-87 (288)
202 COG2999 GrxB Glutaredoxin 2 [P 96.3 0.0093 2E-07 42.6 4.7 68 38-111 2-70 (215)
203 cd02967 mauD Methylamine utili 96.2 0.012 2.5E-07 37.8 4.6 22 37-58 25-46 (114)
204 PTZ00102 disulphide isomerase; 96.2 0.0092 2E-07 47.7 4.9 62 26-95 365-437 (477)
205 smart00594 UAS UAS domain. 96.2 0.095 2.1E-06 34.6 9.1 73 18-95 10-92 (122)
206 TIGR00385 dsbE periplasmic pro 96.2 0.028 6E-07 39.3 6.7 22 37-58 67-88 (173)
207 cd03011 TlpA_like_ScsD_MtbDsbE 96.1 0.024 5.1E-07 36.9 6.0 31 35-65 22-52 (123)
208 PLN02395 glutathione S-transfe 96.1 0.041 8.8E-07 39.3 7.6 72 37-111 3-74 (215)
209 PF06110 DUF953: Eukaryotic pr 96.0 0.0055 1.2E-07 40.9 2.5 52 43-95 36-95 (119)
210 cd02960 AGR Anterior Gradient 96.0 0.013 2.8E-07 39.7 4.3 33 23-55 11-45 (130)
211 PLN02919 haloacid dehalogenase 96.0 0.03 6.6E-07 49.6 7.6 26 33-58 419-445 (1057)
212 KOG3425 Uncharacterized conser 96.0 0.007 1.5E-07 40.4 2.7 29 43-71 43-77 (128)
213 COG3019 Predicted metal-bindin 95.9 0.057 1.2E-06 37.0 6.9 67 33-106 24-93 (149)
214 cd03079 GST_N_Metaxin2 GST_N f 95.9 0.063 1.4E-06 32.8 6.5 58 42-110 14-71 (74)
215 PRK13972 GSH-dependent disulfi 95.8 0.07 1.5E-06 38.3 7.8 71 37-110 2-79 (215)
216 COG5494 Predicted thioredoxin/ 95.7 0.047 1E-06 40.0 6.4 59 34-100 10-70 (265)
217 PRK11752 putative S-transferas 95.6 0.12 2.7E-06 38.6 8.6 77 31-110 39-125 (264)
218 cd03075 GST_N_Mu GST_N family, 95.5 0.24 5.2E-06 30.3 8.4 71 39-110 3-78 (82)
219 KOG0868 Glutathione S-transfer 95.5 0.045 9.9E-07 39.2 5.5 70 40-112 11-80 (217)
220 PF02798 GST_N: Glutathione S- 95.5 0.17 3.7E-06 30.5 7.5 70 37-109 3-73 (76)
221 PF02114 Phosducin: Phosducin; 95.3 0.043 9.3E-07 41.4 5.3 80 37-125 150-240 (265)
222 cd03012 TlpA_like_DipZ_like Tl 95.1 0.18 3.9E-06 33.1 7.3 22 37-58 27-48 (126)
223 PRK14018 trifunctional thiored 95.0 0.052 1.1E-06 44.7 5.3 22 37-58 60-81 (521)
224 PF08534 Redoxin: Redoxin; In 94.9 0.21 4.6E-06 33.4 7.3 27 32-58 26-54 (146)
225 KOG0913 Thiol-disulfide isomer 94.9 0.0042 9.2E-08 45.9 -1.3 85 8-100 14-107 (248)
226 KOG4277 Uncharacterized conser 94.8 0.017 3.8E-07 44.5 1.9 60 37-99 47-111 (468)
227 PHA03075 glutaredoxin-like pro 94.6 0.058 1.3E-06 35.8 3.8 34 35-68 3-36 (123)
228 PF03190 Thioredox_DsbH: Prote 94.6 0.13 2.8E-06 36.2 5.7 74 26-100 28-116 (163)
229 PRK10954 periplasmic protein d 94.5 0.22 4.8E-06 35.8 7.0 20 34-53 38-57 (207)
230 TIGR01130 ER_PDI_fam protein d 94.5 0.072 1.6E-06 42.1 4.8 51 37-95 368-425 (462)
231 PRK10542 glutathionine S-trans 94.5 0.17 3.7E-06 35.6 6.3 71 38-110 2-73 (201)
232 PTZ00057 glutathione s-transfe 94.4 0.35 7.6E-06 34.5 7.8 72 36-109 4-78 (205)
233 cd00340 GSH_Peroxidase Glutath 94.3 0.16 3.5E-06 34.6 5.7 20 37-57 26-45 (152)
234 KOG0912 Thiol-disulfide isomer 94.2 0.074 1.6E-06 41.1 4.0 66 27-100 5-85 (375)
235 PLN02412 probable glutathione 94.1 0.43 9.3E-06 33.2 7.5 56 37-94 33-100 (167)
236 COG4232 Thiol:disulfide interc 94.0 0.12 2.7E-06 42.8 5.2 89 27-122 464-567 (569)
237 TIGR01626 ytfJ_HI0045 conserve 93.8 0.31 6.7E-06 34.9 6.5 37 34-70 60-105 (184)
238 PF11009 DUF2847: Protein of u 93.8 0.41 9E-06 31.2 6.5 72 26-100 8-91 (105)
239 KOG0190 Protein disulfide isom 93.8 0.083 1.8E-06 43.2 3.9 38 25-62 373-413 (493)
240 PTZ00256 glutathione peroxidas 93.6 0.28 6.1E-06 34.6 5.9 19 38-56 46-64 (183)
241 cd02968 SCO SCO (an acronym fo 93.2 0.52 1.1E-05 31.1 6.5 22 36-57 25-47 (142)
242 PLN02399 phospholipid hydroper 93.1 0.49 1.1E-05 35.1 6.8 21 36-56 102-122 (236)
243 PTZ00056 glutathione peroxidas 93.1 0.65 1.4E-05 33.4 7.2 21 37-57 43-63 (199)
244 PF10568 Tom37: Outer mitochon 93.1 0.47 1E-05 28.7 5.5 55 44-110 13-71 (72)
245 PF06953 ArsD: Arsenical resis 92.9 0.43 9.4E-06 32.0 5.6 57 50-108 31-93 (123)
246 COG5429 Uncharacterized secret 92.9 0.23 4.9E-06 37.0 4.6 62 37-98 45-122 (261)
247 TIGR02540 gpx7 putative glutat 92.8 0.66 1.4E-05 31.5 6.7 19 37-55 26-44 (153)
248 KOG1695 Glutathione S-transfer 92.8 0.81 1.8E-05 33.4 7.3 71 35-110 2-72 (206)
249 KOG0867 Glutathione S-transfer 92.6 0.67 1.5E-05 33.9 6.8 73 36-110 2-74 (226)
250 cd02970 PRX_like2 Peroxiredoxi 92.4 0.34 7.4E-06 32.2 4.7 30 29-58 18-49 (149)
251 KOG0191 Thioredoxin/protein di 92.3 0.17 3.7E-06 39.8 3.6 56 34-95 48-107 (383)
252 cd03019 DsbA_DsbA DsbA family, 91.8 0.16 3.5E-06 34.9 2.6 24 34-57 16-39 (178)
253 cd03016 PRX_1cys Peroxiredoxin 91.7 0.37 8E-06 34.6 4.5 42 28-69 19-69 (203)
254 COG0526 TrxA Thiol-disulfide i 91.7 0.14 3.1E-06 31.3 2.1 25 34-58 32-57 (127)
255 COG3634 AhpF Alkyl hydroperoxi 91.3 0.89 1.9E-05 36.2 6.4 78 20-103 103-183 (520)
256 TIGR03137 AhpC peroxiredoxin. 91.2 0.63 1.4E-05 33.0 5.2 22 34-55 31-54 (187)
257 PF04134 DUF393: Protein of un 91.1 0.58 1.3E-05 30.1 4.7 69 39-112 1-76 (114)
258 cd02969 PRX_like1 Peroxiredoxi 91.0 2 4.3E-05 29.6 7.5 30 28-57 19-49 (171)
259 PF00578 AhpC-TSA: AhpC/TSA fa 90.7 0.22 4.8E-06 32.0 2.3 63 29-95 21-89 (124)
260 PF13462 Thioredoxin_4: Thiore 90.6 0.26 5.6E-06 33.3 2.7 32 36-67 15-54 (162)
261 PF13462 Thioredoxin_4: Thiore 90.3 0.44 9.6E-06 32.1 3.7 26 82-108 130-155 (162)
262 PRK13599 putative peroxiredoxi 90.3 0.61 1.3E-05 34.0 4.6 31 39-69 35-72 (215)
263 KOG3171 Conserved phosducin-li 90.3 0.87 1.9E-05 33.7 5.2 95 24-125 149-253 (273)
264 TIGR03143 AhpF_homolog putativ 89.2 1 2.2E-05 37.2 5.6 66 22-95 351-425 (555)
265 PRK13190 putative peroxiredoxi 89.2 0.89 1.9E-05 32.7 4.6 22 35-56 28-51 (202)
266 COG3011 Predicted thiol-disulf 89.1 5.3 0.00012 27.3 8.1 72 33-109 6-82 (137)
267 COG0041 PurE Phosphoribosylcar 88.8 3 6.5E-05 29.2 6.7 73 37-109 7-102 (162)
268 cd03017 PRX_BCP Peroxiredoxin 88.6 1.7 3.8E-05 28.5 5.5 19 37-55 27-46 (140)
269 TIGR03759 conj_TIGR03759 integ 88.6 1.1 2.4E-05 32.5 4.7 60 33-97 108-167 (200)
270 PRK13189 peroxiredoxin; Provis 88.2 1.2 2.5E-05 32.6 4.8 37 33-69 34-79 (222)
271 KOG0191 Thioredoxin/protein di 88.2 1.5 3.2E-05 34.5 5.6 58 32-95 161-224 (383)
272 cd05295 MDH_like Malate dehydr 87.6 1.8 3.9E-05 35.2 5.8 70 42-111 1-82 (452)
273 cd03015 PRX_Typ2cys Peroxiredo 87.0 1.9 4.1E-05 29.9 5.1 24 34-57 29-54 (173)
274 cd03018 PRX_AhpE_like Peroxire 86.8 1.5 3.2E-05 29.2 4.3 29 29-57 23-53 (149)
275 KOG1731 FAD-dependent sulfhydr 86.8 0.27 5.8E-06 40.9 0.7 70 25-95 46-122 (606)
276 TIGR01162 purE phosphoribosyla 86.7 3.6 7.8E-05 28.7 6.2 74 38-111 4-100 (156)
277 PRK13191 putative peroxiredoxi 86.6 1.6 3.5E-05 31.8 4.7 38 33-70 32-78 (215)
278 KOG1672 ATP binding protein [P 86.6 2.2 4.8E-05 31.0 5.2 94 24-125 74-180 (211)
279 PRK11509 hydrogenase-1 operon 86.2 2.4 5.1E-05 28.8 5.0 68 28-103 27-107 (132)
280 cd03014 PRX_Atyp2cys Peroxired 85.4 1.6 3.5E-05 28.9 4.0 30 28-57 21-51 (143)
281 PRK10606 btuE putative glutath 84.0 6.8 0.00015 27.9 6.8 69 28-98 20-102 (183)
282 PRK10382 alkyl hydroperoxide r 83.6 2.5 5.5E-05 30.1 4.5 21 35-55 32-54 (187)
283 cd02971 PRX_family Peroxiredox 82.8 1.5 3.2E-05 28.8 2.8 21 37-57 26-47 (140)
284 PRK09437 bcp thioredoxin-depen 81.6 4.7 0.0001 27.1 5.1 21 33-53 29-51 (154)
285 PRK15000 peroxidase; Provision 81.6 6.4 0.00014 28.2 6.0 28 29-56 29-58 (200)
286 PF01323 DSBA: DSBA-like thior 80.3 1.9 4E-05 29.9 2.8 33 36-68 1-38 (193)
287 COG3340 PepE Peptidase E [Amin 78.9 24 0.00052 26.1 8.4 98 18-126 14-121 (224)
288 COG1651 DsbG Protein-disulfide 78.2 8.9 0.00019 27.9 5.9 24 34-57 85-108 (244)
289 KOG3414 Component of the U4/U6 77.9 4.5 9.7E-05 27.5 3.8 69 24-100 10-90 (142)
290 TIGR00385 dsbE periplasmic pro 77.4 15 0.00032 25.4 6.7 64 28-100 85-151 (173)
291 KOG4420 Uncharacterized conser 75.8 1.5 3.1E-05 33.4 1.2 74 37-112 27-100 (325)
292 cd03022 DsbA_HCCA_Iso DsbA fam 74.9 5.7 0.00012 27.5 4.0 25 83-108 162-186 (192)
293 PF10865 DUF2703: Domain of un 74.8 10 0.00022 25.3 4.9 48 44-100 14-72 (120)
294 PRK00522 tpx lipid hydroperoxi 73.7 8.3 0.00018 26.6 4.5 21 37-57 48-69 (167)
295 PF11287 DUF3088: Protein of u 73.7 4.5 9.8E-05 26.7 2.9 50 44-97 23-76 (112)
296 PTZ00137 2-Cys peroxiredoxin; 72.6 10 0.00023 28.6 5.1 28 28-55 92-121 (261)
297 PF02966 DIM1: Mitosis protein 72.3 15 0.00033 24.9 5.3 68 26-100 9-87 (133)
298 cd03019 DsbA_DsbA DsbA family, 72.3 6.2 0.00013 26.9 3.6 23 82-105 137-159 (178)
299 cd03008 TryX_like_RdCVF Trypar 70.8 31 0.00067 23.6 7.6 59 36-100 65-126 (146)
300 TIGR01689 EcbF-BcbF capsule bi 70.5 14 0.0003 24.7 4.9 49 21-69 26-87 (126)
301 PF01323 DSBA: DSBA-like thior 70.4 6.7 0.00015 27.1 3.5 27 82-109 161-188 (193)
302 PF09822 ABC_transp_aux: ABC-t 70.1 10 0.00023 28.1 4.7 64 20-86 12-86 (271)
303 cd03025 DsbA_FrnE_like DsbA fa 69.6 3.2 6.9E-05 28.8 1.7 21 36-56 2-22 (193)
304 COG2761 FrnE Predicted dithiol 68.9 2.7 5.8E-05 31.1 1.2 23 36-58 7-29 (225)
305 cd03021 DsbA_GSTK DsbA family, 68.8 9.9 0.00021 27.2 4.1 28 36-63 2-33 (209)
306 COG1651 DsbG Protein-disulfide 68.7 7.6 0.00016 28.2 3.6 28 80-108 207-234 (244)
307 PF03227 GILT: Gamma interfero 68.7 5.3 0.00011 25.8 2.5 16 36-51 2-17 (108)
308 PF04566 RNA_pol_Rpb2_4: RNA p 68.1 4.9 0.00011 23.6 2.0 17 93-109 1-17 (63)
309 TIGR03865 PQQ_CXXCW PQQ-depend 65.6 11 0.00024 26.1 3.7 29 33-61 115-143 (162)
310 PF12689 Acid_PPase: Acid Phos 65.5 45 0.00097 23.5 6.8 74 22-98 48-133 (169)
311 KOG2454 Betaine aldehyde dehyd 64.5 15 0.00032 29.8 4.6 41 27-67 209-254 (583)
312 PTZ00253 tryparedoxin peroxida 63.1 24 0.00052 25.0 5.2 42 28-69 31-80 (199)
313 cd03024 DsbA_FrnE DsbA family, 63.1 23 0.0005 24.6 5.1 24 83-107 170-194 (201)
314 cd03013 PRX5_like Peroxiredoxi 62.0 20 0.00043 24.5 4.5 24 28-51 23-48 (155)
315 cd03022 DsbA_HCCA_Iso DsbA fam 61.7 7.9 0.00017 26.7 2.4 28 37-64 1-32 (192)
316 cd02991 UAS_ETEA UAS family, E 60.7 44 0.00095 21.8 7.7 63 23-94 5-81 (116)
317 cd02974 AhpF_NTD_N Alkyl hydro 60.7 14 0.00031 23.4 3.2 35 23-58 5-43 (94)
318 PF00731 AIRC: AIR carboxylase 59.0 13 0.00028 25.7 3.1 48 36-83 2-51 (150)
319 COG1331 Highly conserved prote 58.9 89 0.0019 27.0 8.4 74 26-100 34-122 (667)
320 PF15643 Tox-PL-2: Papain fold 57.0 36 0.00079 22.0 4.6 51 44-101 20-73 (100)
321 KOG3170 Conserved phosducin-li 56.2 25 0.00054 25.9 4.2 70 21-96 98-168 (240)
322 PRK04195 replication factor C 56.1 84 0.0018 25.6 7.8 63 7-69 3-74 (482)
323 PF10087 DUF2325: Uncharacteri 55.3 49 0.0011 20.6 5.9 42 24-65 38-81 (97)
324 PF13905 Thioredoxin_8: Thiore 55.1 44 0.00096 20.0 7.0 56 34-95 33-88 (95)
325 cd03024 DsbA_FrnE DsbA family, 55.0 7.9 0.00017 27.0 1.5 20 37-56 1-20 (201)
326 TIGR00853 pts-lac PTS system, 54.2 53 0.0011 20.6 6.0 69 35-104 4-90 (95)
327 KOG0914 Thioredoxin-like prote 53.9 13 0.00028 27.7 2.5 62 37-100 148-218 (265)
328 PLN02590 probable tyrosine dec 53.3 1.3E+02 0.0027 25.3 8.4 80 35-123 228-317 (539)
329 TIGR03190 benz_CoA_bzdN benzoy 51.1 70 0.0015 25.2 6.4 12 89-100 343-354 (377)
330 PF03575 Peptidase_S51: Peptid 49.3 37 0.0008 23.0 4.1 63 48-121 2-64 (154)
331 PTZ00494 tuzin-like protein; P 47.8 47 0.001 27.9 4.9 58 35-99 395-453 (664)
332 PF00282 Pyridoxal_deC: Pyrido 47.2 54 0.0012 25.8 5.2 73 34-109 139-216 (373)
333 KOG2961 Predicted hydrolase (H 46.8 1E+02 0.0022 21.8 7.6 93 25-120 70-167 (190)
334 cd05564 PTS_IIB_chitobiose_lic 46.1 73 0.0016 19.9 5.1 58 46-104 14-86 (96)
335 PRK00766 hypothetical protein; 44.9 46 0.00099 24.1 4.1 51 59-110 42-94 (194)
336 cd06387 PBP1_iGluR_AMPA_GluR3 44.6 1E+02 0.0022 24.3 6.4 45 20-64 48-92 (372)
337 TIGR03439 methyl_EasF probable 44.6 1.4E+02 0.0031 23.1 7.1 65 40-109 80-147 (319)
338 cd06388 PBP1_iGluR_AMPA_GluR4 44.1 1.3E+02 0.0027 23.5 6.9 87 21-109 49-146 (371)
339 PF11399 DUF3192: Protein of u 43.5 21 0.00045 23.2 2.0 17 88-104 80-96 (102)
340 PF09413 DUF2007: Domain of un 43.5 25 0.00055 20.2 2.2 53 37-98 1-53 (67)
341 cd05565 PTS_IIB_lactose PTS_II 42.8 88 0.0019 19.9 4.9 53 48-101 17-84 (99)
342 PF13743 Thioredoxin_5: Thiore 42.1 25 0.00055 24.6 2.5 20 39-58 2-21 (176)
343 KOG2603 Oligosaccharyltransfer 41.9 42 0.00091 26.2 3.7 52 37-96 64-133 (331)
344 PRK15317 alkyl hydroperoxide r 41.9 31 0.00068 28.2 3.3 36 22-58 4-43 (517)
345 KOG2433 Uncharacterized conser 40.7 1.8E+02 0.004 23.8 7.2 94 3-97 403-510 (577)
346 PRK04016 DNA-directed RNA poly 40.1 26 0.00057 20.6 1.9 37 90-126 3-42 (62)
347 PRK00994 F420-dependent methyl 40.1 1.6E+02 0.0036 22.3 6.6 93 27-127 51-152 (277)
348 PF14237 DUF4339: Domain of un 39.2 40 0.00086 17.9 2.4 24 94-117 5-30 (45)
349 cd01444 GlpE_ST GlpE sulfurtra 39.1 75 0.0016 19.0 4.1 35 26-61 48-82 (96)
350 PLN02263 serine decarboxylase 38.8 2E+02 0.0042 23.8 7.3 75 38-124 180-259 (470)
351 cd08183 Fe-ADH2 Iron-containin 38.5 1.9E+02 0.0042 22.6 8.7 56 26-81 12-69 (374)
352 cd00755 YgdL_like Family of ac 38.3 54 0.0012 24.2 3.8 20 43-62 154-173 (231)
353 COG1628 Endonuclease V homolog 37.8 87 0.0019 22.5 4.6 50 59-110 41-92 (185)
354 cd03082 TRX_Fd_NuoE_W_FDH_beta 37.1 49 0.0011 19.7 2.8 20 85-104 42-61 (72)
355 TIGR03140 AhpF alkyl hydropero 36.9 42 0.00091 27.5 3.3 36 22-58 4-43 (515)
356 cd03129 GAT1_Peptidase_E_like 36.5 1.5E+02 0.0034 20.9 10.1 70 34-113 29-101 (210)
357 PF07728 AAA_5: AAA domain (dy 36.4 98 0.0021 20.0 4.5 40 36-75 1-40 (139)
358 KOG2805 tRNA (5-methylaminomet 36.4 1.5E+02 0.0033 23.4 6.0 53 44-96 49-104 (377)
359 KOG0572 Glutamine phosphoribos 36.0 28 0.0006 28.2 2.0 68 50-127 305-387 (474)
360 PRK10670 hypothetical protein; 36.0 72 0.0016 21.9 3.9 46 50-95 3-50 (159)
361 KOG3160 Gamma-interferon induc 35.4 28 0.0006 25.7 1.8 18 34-51 40-57 (220)
362 PF02288 Dehydratase_MU: Dehyd 35.2 1.3E+02 0.0028 19.7 4.9 51 35-85 3-56 (112)
363 COG4408 Uncharacterized protei 35.2 51 0.0011 26.3 3.3 48 18-65 154-201 (431)
364 KOG1734 Predicted RING-contain 34.9 18 0.00039 27.7 0.8 10 42-51 270-279 (328)
365 PF11238 DUF3039: Protein of u 34.9 23 0.00051 20.5 1.1 28 28-55 18-57 (58)
366 TIGR02654 circ_KaiB circadian 34.5 89 0.0019 19.6 3.7 65 37-109 6-82 (87)
367 PF06053 DUF929: Domain of unk 33.9 26 0.00056 26.4 1.5 30 31-60 54-89 (249)
368 TIGR02263 benz_CoA_red_C benzo 32.9 2E+02 0.0043 22.7 6.4 33 37-69 325-361 (380)
369 PF13364 BetaGal_dom4_5: Beta- 32.8 42 0.00091 21.6 2.2 16 89-104 63-78 (111)
370 PRK09301 circadian clock prote 32.7 94 0.002 20.2 3.7 65 37-109 9-85 (103)
371 PRK09590 celB cellobiose phosp 32.5 1.4E+02 0.003 19.2 5.2 55 46-101 16-87 (104)
372 COG0602 NrdG Organic radical a 32.2 27 0.00059 25.3 1.4 83 36-126 22-111 (212)
373 KOG3027 Mitochondrial outer me 31.9 1E+02 0.0022 22.9 4.2 67 42-119 31-99 (257)
374 KOG4749 Inositol polyphosphate 31.8 1.3E+02 0.0028 23.8 5.0 59 44-103 156-219 (375)
375 cd02127 PA_hPAP21_like PA_hPAP 31.7 93 0.002 20.3 3.8 61 34-97 34-96 (118)
376 PF07908 D-aminoacyl_C: D-amin 30.7 48 0.001 18.1 1.9 14 88-101 18-31 (48)
377 PF07449 HyaE: Hydrogenase-1 e 30.7 84 0.0018 20.4 3.3 69 34-108 26-103 (107)
378 cd06389 PBP1_iGluR_AMPA_GluR2 30.5 2.2E+02 0.0048 22.1 6.3 44 21-64 43-86 (370)
379 KOG2863 RNA lariat debranching 30.4 51 0.0011 26.5 2.6 11 88-98 74-84 (456)
380 cd04333 ProX_deacylase This CD 30.2 1.3E+02 0.0029 20.0 4.5 22 49-70 2-23 (148)
381 cd01520 RHOD_YbbB Member of th 29.7 1.2E+02 0.0026 19.6 4.1 35 33-69 85-119 (128)
382 cd04911 ACT_AKiii-YclM-BS_1 AC 29.2 54 0.0012 20.0 2.1 22 43-64 13-34 (76)
383 cd01524 RHOD_Pyr_redox Member 29.2 1.3E+02 0.0028 17.9 4.0 27 33-60 50-76 (90)
384 KOG2949 Ketopantoate hydroxyme 29.2 1.5E+02 0.0032 22.4 4.7 49 39-93 110-158 (306)
385 cd06381 PBP1_iGluR_delta_like 29.1 2.8E+02 0.006 21.6 8.6 44 21-64 48-91 (363)
386 PF07912 ERp29_N: ERp29, N-ter 28.9 15 0.00033 24.7 -0.4 95 28-127 14-123 (126)
387 PLN02790 transketolase 28.8 1.8E+02 0.0039 24.9 5.8 89 35-124 541-641 (654)
388 PRK05282 (alpha)-aspartyl dipe 28.8 2.4E+02 0.0052 20.8 8.4 82 25-121 21-108 (233)
389 PF15616 TerY-C: TerY-C metal 28.6 16 0.00035 24.8 -0.3 16 39-54 74-89 (131)
390 PF04805 Pox_E10: E10-like pro 28.5 56 0.0012 19.6 2.0 17 44-60 17-34 (70)
391 PF01763 Herpes_UL6: Herpesvir 28.4 1.5E+02 0.0032 25.1 5.1 68 26-112 250-318 (557)
392 PRK01415 hypothetical protein; 28.2 98 0.0021 23.2 3.7 31 30-61 167-197 (247)
393 KOG4409 Predicted hydrolase/ac 28.0 35 0.00076 27.1 1.4 52 44-97 42-98 (365)
394 PF08308 PEGA: PEGA domain; I 27.8 51 0.0011 19.0 1.8 11 92-102 14-24 (71)
395 PF01522 Polysacc_deac_1: Poly 27.6 44 0.00096 21.0 1.7 27 36-62 96-122 (123)
396 PF11008 DUF2846: Protein of u 27.5 54 0.0012 21.2 2.1 16 88-103 40-55 (117)
397 cd04336 YeaK YeaK is an unchar 27.4 1.4E+02 0.003 19.9 4.2 25 49-73 2-26 (153)
398 PF03470 zf-XS: XS zinc finger 27.2 18 0.00039 19.7 -0.2 6 45-50 1-6 (43)
399 PF00532 Peripla_BP_1: Peripla 26.6 2.5E+02 0.0053 20.8 5.7 70 22-98 17-88 (279)
400 PF02724 CDC45: CDC45-like pro 26.6 2.2E+02 0.0047 24.3 5.9 67 36-110 1-70 (622)
401 PF00763 THF_DHG_CYH: Tetrahyd 26.4 1.9E+02 0.0041 18.8 5.2 59 35-94 30-92 (117)
402 PF07511 DUF1525: Protein of u 26.2 96 0.0021 20.5 3.0 25 84-109 79-104 (114)
403 cd03146 GAT1_Peptidase_E Type 26.0 2.5E+02 0.0054 20.0 8.2 87 23-122 19-110 (212)
404 PF02780 Transketolase_C: Tran 25.9 1.1E+02 0.0025 19.6 3.4 36 34-69 9-45 (124)
405 PF08599 Nbs1_C: DNA damage re 25.8 62 0.0013 19.1 1.8 28 88-122 16-45 (65)
406 cd01448 TST_Repeat_1 Thiosulfa 25.3 1.5E+02 0.0033 18.6 3.9 28 34-61 79-106 (122)
407 cd08193 HVD 5-hydroxyvalerate 25.2 3.3E+02 0.0072 21.2 8.2 63 21-83 10-79 (376)
408 cd01521 RHOD_PspE2 Member of t 25.0 1.8E+02 0.0039 18.1 4.2 29 33-61 63-92 (110)
409 PF03691 UPF0167: Uncharacteri 24.9 61 0.0013 23.1 2.0 91 30-122 28-136 (176)
410 PF15379 DUF4606: Domain of un 24.9 61 0.0013 21.1 1.9 20 37-56 26-45 (104)
411 TIGR03521 GldG gliding-associa 24.7 2.9E+02 0.0063 23.0 6.3 53 20-72 35-97 (552)
412 cd04335 PrdX_deacylase This CD 24.7 1.9E+02 0.004 19.5 4.4 26 50-75 3-28 (156)
413 TIGR00011 YbaK_EbsC ybaK/ebsC 24.7 1.6E+02 0.0035 19.7 4.1 23 50-72 2-24 (152)
414 KOG0629 Glutamate decarboxylas 24.1 4.2E+02 0.0091 22.0 8.2 76 33-109 194-275 (510)
415 KOG4700 Uncharacterized homolo 24.0 1.6E+02 0.0034 21.4 3.9 57 52-109 53-134 (207)
416 cd08176 LPO Lactadehyde:propan 24.0 3.6E+02 0.0077 21.1 7.3 62 21-82 12-80 (377)
417 KOG3028 Translocase of outer m 23.7 3.6E+02 0.0078 21.1 7.3 64 37-112 4-73 (313)
418 TIGR03757 conj_TIGR03757 integ 23.6 1E+02 0.0022 20.3 2.8 25 84-109 80-105 (113)
419 KOG3040 Predicted sugar phosph 23.5 2.6E+02 0.0056 21.0 5.0 75 20-100 24-99 (262)
420 smart00450 RHOD Rhodanese Homo 23.1 1.7E+02 0.0036 17.0 3.7 28 33-61 55-82 (100)
421 cd02978 KaiB_like KaiB-like fa 23.1 1.5E+02 0.0032 17.9 3.2 37 37-73 4-47 (72)
422 PF09369 DUF1998: Domain of un 23.0 36 0.00078 20.6 0.5 35 88-122 33-67 (84)
423 cd08188 Fe-ADH4 Iron-containin 22.9 3.8E+02 0.0081 21.0 7.9 62 21-82 12-80 (377)
424 cd08185 Fe-ADH1 Iron-containin 22.9 3.7E+02 0.0081 21.0 8.2 61 22-82 11-78 (380)
425 COG1543 Uncharacterized conser 22.9 52 0.0011 27.2 1.5 28 39-66 180-207 (504)
426 PF14437 MafB19-deam: MafB19-l 22.8 1.8E+02 0.0039 20.1 3.9 34 35-68 100-136 (146)
427 COG4822 CbiK Cobalamin biosynt 22.6 3.4E+02 0.0074 20.4 7.6 87 34-124 136-230 (265)
428 PF01949 DUF99: Protein of unk 22.5 39 0.00085 24.2 0.7 49 60-110 37-87 (187)
429 COG0848 ExbD Biopolymer transp 22.4 1.7E+02 0.0036 19.8 3.7 47 74-127 82-128 (137)
430 TIGR00735 hisF imidazoleglycer 22.3 2.5E+02 0.0055 20.6 5.1 59 52-113 36-96 (254)
431 cd03145 GAT1_cyanophycinase Ty 22.2 3.1E+02 0.0066 19.7 8.3 36 34-69 29-68 (217)
432 PRK05313 hypothetical protein; 22.1 3.3E+02 0.0071 22.5 5.8 24 48-71 57-80 (452)
433 TIGR00734 hisAF_rel hisA/hisF 22.0 1.7E+02 0.0036 21.3 3.9 63 47-113 142-206 (221)
434 PLN02948 phosphoribosylaminoim 21.9 3.4E+02 0.0075 22.9 6.2 77 36-112 412-513 (577)
435 PRK08118 topology modulation p 21.8 1.4E+02 0.0031 20.4 3.4 32 35-66 2-33 (167)
436 cd08025 RNR_PFL_like_DUF711 Un 21.7 3.3E+02 0.0071 22.1 5.7 24 48-71 53-76 (400)
437 cd01896 DRG The developmentall 21.6 2.2E+02 0.0047 20.7 4.5 49 47-98 137-185 (233)
438 PRK15116 sulfur acceptor prote 21.2 1E+02 0.0022 23.4 2.7 19 43-61 173-192 (268)
439 PF12949 HeH: HeH/LEM domain; 21.1 64 0.0014 16.6 1.1 13 50-62 8-20 (35)
440 PF05728 UPF0227: Uncharacteri 21.0 1.9E+02 0.0042 20.5 4.0 9 97-105 65-73 (187)
441 KOG4022 Dihydropteridine reduc 21.0 3.3E+02 0.0072 19.7 6.6 81 33-115 2-99 (236)
442 cd04731 HisF The cyclase subun 20.9 2.1E+02 0.0047 20.7 4.4 60 51-113 32-93 (243)
443 PF09248 DUF1965: Domain of un 20.8 1.3E+02 0.0028 18.3 2.6 34 89-122 26-59 (74)
444 TIGR03297 Ppyr-DeCO2ase phosph 20.6 1.4E+02 0.0031 23.6 3.5 54 47-102 103-157 (361)
445 PF14424 Toxin-deaminase: The 20.5 1.7E+02 0.0037 19.7 3.5 23 35-57 97-120 (133)
446 PHA02558 uvsW UvsW helicase; P 20.4 4.1E+02 0.0088 21.8 6.3 65 35-104 345-410 (501)
447 cd08186 Fe-ADH8 Iron-containin 20.4 4.3E+02 0.0093 20.7 8.2 48 35-82 27-79 (383)
448 cd06340 PBP1_ABC_ligand_bindin 20.3 2.3E+02 0.005 21.4 4.6 41 23-63 57-98 (347)
449 PF08415 NRPS: Nonribosomal pe 20.3 1.8E+02 0.0038 16.3 3.1 24 74-97 7-31 (58)
450 TIGR02808 short_TIGR02808 cons 20.3 48 0.001 17.8 0.6 20 77-97 5-24 (42)
451 KOG3460 Small nuclear ribonucl 20.1 2E+02 0.0044 17.9 3.4 13 88-100 69-81 (91)
452 COG5309 Exo-beta-1,3-glucanase 20.1 4.2E+02 0.0092 20.5 6.6 98 22-123 63-169 (305)
453 smart00213 UBQ Ubiquitin homol 20.1 1.7E+02 0.0036 15.8 4.5 40 62-101 11-50 (64)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=100.00 E-value=2.4e-32 Score=177.32 Aligned_cols=98 Identities=66% Similarity=1.140 Sum_probs=93.6
Q ss_pred HHHhcCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHH
Q 033109 29 ERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMA 108 (127)
Q Consensus 29 ~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~ 108 (127)
++++++++|+||++++||+|++++++|++++++|+++|||.+++..++++++.+.+|. .++|+|||+|++|||++++.+
T Consensus 2 ~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred hhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHH
Confidence 5788999999999999999999999999999999999999999988888899999996 699999999999999999999
Q ss_pred hhHcCCcHHHHHhcCcccC
Q 033109 109 SHINGTLVPLLKEAGALWL 127 (127)
Q Consensus 109 ~~~~g~L~~~l~~~g~~~~ 127 (127)
++++|+|+++|+++|++|+
T Consensus 81 l~~~G~L~~~l~~~~~~~~ 99 (99)
T TIGR02189 81 LHISGSLVPMLKQAGALWL 99 (99)
T ss_pred HHHcCCHHHHHHHhCcccC
Confidence 9999999999999999975
No 2
>PHA03050 glutaredoxin; Provisional
Probab=99.97 E-value=4.5e-31 Score=173.73 Aligned_cols=101 Identities=18% Similarity=0.349 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCC---CcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEe
Q 033109 25 LEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGV---NPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVG 101 (127)
Q Consensus 25 ~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i---~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ig 101 (127)
.+.+++++++++|+||++++||||.+++++|+++++ +|+++||+...+..++++++.+.+|. .+||+|||||++||
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iG 81 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIG 81 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEe
Confidence 578999999999999999999999999999999999 79999999877777888999999996 69999999999999
Q ss_pred ecHHHHHhhHcCCcHHHHHhcCccc
Q 033109 102 SMDRVMASHINGTLVPLLKEAGALW 126 (127)
Q Consensus 102 G~~~~~~~~~~g~L~~~l~~~g~~~ 126 (127)
|++|+.+++++|+|.++|+++|++|
T Consensus 82 G~ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 82 GYSDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred ChHHHHHHHHcCCHHHHHHHccccc
Confidence 9999999999999999999999987
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-30 Score=168.58 Aligned_cols=102 Identities=55% Similarity=0.923 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeec
Q 033109 24 PLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSM 103 (127)
Q Consensus 24 ~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~ 103 (127)
..++++++++.++|+||++++||||++++.+|.+.++.+..+++|.++++.+++++|.+.+|+ +++|.|||+|++|||.
T Consensus 3 ~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~ 81 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGA 81 (104)
T ss_pred HHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCH
Confidence 456799999999999999999999999999999999999999999999999999999999997 5999999999999999
Q ss_pred HHHHHhhHcCCcHHHHHhcCccc
Q 033109 104 DRVMASHINGTLVPLLKEAGALW 126 (127)
Q Consensus 104 ~~~~~~~~~g~L~~~l~~~g~~~ 126 (127)
+++.++|.+|+|.++|+.+|++|
T Consensus 82 ~dl~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 82 SDLMALHKSGELVPLLKEAGALW 104 (104)
T ss_pred HHHHHHHHcCCHHHHHHHhhccC
Confidence 99999999999999999999875
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=99.97 E-value=4.3e-30 Score=170.35 Aligned_cols=100 Identities=25% Similarity=0.472 Sum_probs=92.4
Q ss_pred CHHHHHHHHhcCCcEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECC
Q 033109 23 DPLEHIERLASENAVVIFSI-----SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGG 97 (127)
Q Consensus 23 ~~~~~~~~~~~~~~v~if~~-----~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g 97 (127)
...+.++++++.++|+||++ |+||||++++.+|++++++|.++||+.++ +++++|.+++|. +|||+|||||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~---~~~~~l~~~sg~-~TVPQIFI~G 78 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP---DIRAELPKYANW-PTFPQLWVDG 78 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH---HHHHHHHHHhCC-CCCCeEEECC
Confidence 46788999999999999999 49999999999999999999999998764 477799999995 7999999999
Q ss_pred EEEeecHHHHHhhHcCCcHHHHHhcCccc
Q 033109 98 KLVGSMDRVMASHINGTLVPLLKEAGALW 126 (127)
Q Consensus 98 ~~igG~~~~~~~~~~g~L~~~l~~~g~~~ 126 (127)
++|||+|++.+++++|+|+++|+++|++|
T Consensus 79 ~~IGG~ddl~~l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 79 ELVGGCDIVIEMYQRGELQQLIKETAAKY 107 (115)
T ss_pred EEEcChHHHHHHHHCCCHHHHHHHHHhhh
Confidence 99999999999999999999999999875
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.95 E-value=4.8e-27 Score=151.90 Aligned_cols=91 Identities=25% Similarity=0.482 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCcEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEE
Q 033109 25 LEHIERLASENAVVIFSI-----SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKL 99 (127)
Q Consensus 25 ~~~~~~~~~~~~v~if~~-----~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ 99 (127)
.+.+++++++++|+||++ ++||||.+++++|+++|++|+++||+.++ +.+++|.+.+|. .++|+|||||++
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~---~~~~~l~~~tg~-~tvP~vfi~g~~ 77 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDP---EIRQGIKEYSNW-PTIPQLYVKGEF 77 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCH---HHHHHHHHHhCC-CCCCEEEECCEE
Confidence 367899999999999988 89999999999999999999999998654 466689999996 699999999999
Q ss_pred EeecHHHHHhhHcCCcHHHH
Q 033109 100 VGSMDRVMASHINGTLVPLL 119 (127)
Q Consensus 100 igG~~~~~~~~~~g~L~~~l 119 (127)
|||++++.+++++|+|.++|
T Consensus 78 iGG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 78 VGGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred EeChHHHHHHHHCcChHHhC
Confidence 99999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.93 E-value=2.2e-25 Score=142.17 Aligned_cols=85 Identities=29% Similarity=0.550 Sum_probs=77.6
Q ss_pred HHHHhcCCcEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEee
Q 033109 28 IERLASENAVVIFSI-----SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGS 102 (127)
Q Consensus 28 ~~~~~~~~~v~if~~-----~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG 102 (127)
++++++.++|+||++ ++||+|.+++++|++++++|+++||+.++ +++++|.+.+|. .++|+|||||++|||
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~---~~~~~l~~~~g~-~tvP~vfi~g~~iGG 76 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDE---EVRQGLKEYSNW-PTFPQLYVNGELVGG 76 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCH---HHHHHHHHHhCC-CCCCEEEECCEEEeC
Confidence 367889999999998 59999999999999999999999998663 567789999996 699999999999999
Q ss_pred cHHHHHhhHcCCcH
Q 033109 103 MDRVMASHINGTLV 116 (127)
Q Consensus 103 ~~~~~~~~~~g~L~ 116 (127)
++++.+++++|+|+
T Consensus 77 ~~~l~~l~~~g~L~ 90 (90)
T cd03028 77 CDIVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHHHcCCcC
Confidence 99999999999985
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.92 E-value=2e-24 Score=156.03 Aligned_cols=96 Identities=25% Similarity=0.478 Sum_probs=87.9
Q ss_pred CCHHHHHHHHhcCCcEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC
Q 033109 22 GDPLEHIERLASENAVVIFSI-----SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG 96 (127)
Q Consensus 22 ~~~~~~~~~~~~~~~v~if~~-----~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~ 96 (127)
.+..++++++++.++|+||++ |+||+|++++.+|++++++|.++||+.+++ .+++|++.+|. +++|+||||
T Consensus 100 ~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~---~~~~l~~~sg~-~TvPqVfI~ 175 (204)
T PTZ00062 100 EDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPD---LREELKVYSNW-PTYPQLYVN 175 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHH---HHHHHHHHhCC-CCCCeEEEC
Confidence 358889999999999999998 689999999999999999999999996653 56689999995 799999999
Q ss_pred CEEEeecHHHHHhhHcCCcHHHHHh
Q 033109 97 GKLVGSMDRVMASHINGTLVPLLKE 121 (127)
Q Consensus 97 g~~igG~~~~~~~~~~g~L~~~l~~ 121 (127)
|++|||++++.+++++|+|+++|.+
T Consensus 176 G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 176 GELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred CEEEcChHHHHHHHHcCChhhhhhh
Confidence 9999999999999999999999975
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.91 E-value=4.2e-24 Score=134.14 Aligned_cols=83 Identities=30% Similarity=0.538 Sum_probs=75.0
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcC
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHING 113 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g 113 (127)
+.+|++|++++||+|++++.+|++++++|+++||+.+++ ..+++.+.+|. .++|+||+||++|||++++.+++.+|
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~---~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~~g 76 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA---KREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDARG 76 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH---HHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHHcC
Confidence 347999999999999999999999999999999987654 34468888897 68999999999999999999999999
Q ss_pred CcHHHHH
Q 033109 114 TLVPLLK 120 (127)
Q Consensus 114 ~L~~~l~ 120 (127)
+|.++|+
T Consensus 77 ~l~~~~~ 83 (83)
T PRK10638 77 GLDPLLK 83 (83)
T ss_pred CHHHHhC
Confidence 9999885
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.90 E-value=9.4e-24 Score=131.05 Aligned_cols=79 Identities=35% Similarity=0.593 Sum_probs=72.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcCCcH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLV 116 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g~L~ 116 (127)
|+||++++||+|.+++++|+++|++|+++||+.++. .++++...+|. .++|+|||+|++|||++++.+++++|+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~---~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~g~l~ 76 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA---LRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDREGKLD 76 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH---HHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHcCChh
Confidence 689999999999999999999999999999997664 44578888885 68999999999999999999999999999
Q ss_pred HHH
Q 033109 117 PLL 119 (127)
Q Consensus 117 ~~l 119 (127)
++|
T Consensus 77 ~~l 79 (79)
T TIGR02181 77 PLL 79 (79)
T ss_pred hhC
Confidence 875
No 10
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.90 E-value=3.4e-23 Score=129.13 Aligned_cols=82 Identities=34% Similarity=0.607 Sum_probs=76.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC--cEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcCC
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVN--PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGT 114 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~--~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g~ 114 (127)
|++|+++|||+|++++++|++++++ |+.++|+.+++..++++++.+.+|. .++|+||++|+++||++++++++++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~g~ 79 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKSGK 79 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHcCC
Confidence 6899999999999999999999999 9999999988777788889999997 589999999999999999999999999
Q ss_pred cHHHH
Q 033109 115 LVPLL 119 (127)
Q Consensus 115 L~~~l 119 (127)
|+++|
T Consensus 80 l~~~~ 84 (84)
T TIGR02180 80 LAELL 84 (84)
T ss_pred hhhhC
Confidence 99875
No 11
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.89 E-value=9.9e-23 Score=126.70 Aligned_cols=82 Identities=45% Similarity=0.770 Sum_probs=76.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcCCc
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTL 115 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g~L 115 (127)
+|++|++++||+|.+++.+|++++++|+.++++.+++..++++++++.+|. .++|+||++|+++||+++++++.++|+|
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~g~l 79 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKSGKL 79 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHcCCc
Confidence 589999999999999999999999999999999988877777889999996 6999999999999999999999999999
Q ss_pred HHH
Q 033109 116 VPL 118 (127)
Q Consensus 116 ~~~ 118 (127)
+++
T Consensus 80 ~~~ 82 (82)
T cd03419 80 VKL 82 (82)
T ss_pred cCC
Confidence 863
No 12
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.89 E-value=1.2e-22 Score=140.04 Aligned_cols=84 Identities=26% Similarity=0.476 Sum_probs=75.9
Q ss_pred cEEEEEeC------CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCC---CCCccEEEECCEEEeecHHH
Q 033109 36 AVVIFSIS------SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGT---SPAVPVVFIGGKLVGSMDRV 106 (127)
Q Consensus 36 ~v~if~~~------~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~---~~~vP~ifv~g~~igG~~~~ 106 (127)
+|+||+++ +||+|++++.+|++++|+|.++||+.+++ ++++|++.+|. +.++|+|||+|++|||.+++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~---~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSG---FREELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHH---HHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 58999999 99999999999999999999999997654 45578887774 36899999999999999999
Q ss_pred HHhhHcCCcHHHHHhc
Q 033109 107 MASHINGTLVPLLKEA 122 (127)
Q Consensus 107 ~~~~~~g~L~~~l~~~ 122 (127)
.+++++|+|.++|+.+
T Consensus 78 ~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 78 LRLNESGELRKLLKGI 93 (147)
T ss_pred HHHHHcCCHHHHHhhc
Confidence 9999999999999875
No 13
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.5e-22 Score=128.16 Aligned_cols=98 Identities=29% Similarity=0.504 Sum_probs=89.8
Q ss_pred CCHHHHHHHHhcCCcEEEEEe-----CCChhHHHHHHHHHhcC-CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 22 GDPLEHIERLASENAVVIFSI-----SSCCMCHAVKRLFCGMG-VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 22 ~~~~~~~~~~~~~~~v~if~~-----~~Cp~C~~~k~~L~~~~-i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
.+..+++++.++.++|++|.+ |.|.|..++..+|..+| ++|..+||-.+++ +++.|+++++ |+|+|++||
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~e---iR~~lk~~s~-WPT~PQLyi 77 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE---IRQGLKEYSN-WPTFPQLYV 77 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHH---HHhccHhhcC-CCCCceeeE
Confidence 356789999999999999997 67999999999999999 7999999998765 6779999888 899999999
Q ss_pred CCEEEeecHHHHHhhHcCCcHHHHHhcC
Q 033109 96 GGKLVGSMDRVMASHINGTLVPLLKEAG 123 (127)
Q Consensus 96 ~g~~igG~~~~~~~~~~g~L~~~l~~~g 123 (127)
+|++|||+|-+.+++++|+|+++|++++
T Consensus 78 ~GEfvGG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 78 NGEFVGGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred CCEEeccHHHHHHHHHcchHHHHHHhcC
Confidence 9999999999999999999999998864
No 14
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.3e-22 Score=125.02 Aligned_cols=78 Identities=33% Similarity=0.571 Sum_probs=69.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcCCc
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTL 115 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g~L 115 (127)
.|+||++++||||++++++|++.|++|++++++.++. .+.++.+++..|. .+||+|||||+++||++++.+++..+.|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 6899999999999999999999999999999998874 3445567776686 6999999999999999999999888876
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.87 E-value=1.2e-21 Score=120.05 Aligned_cols=75 Identities=28% Similarity=0.516 Sum_probs=66.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcC
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHING 113 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g 113 (127)
+|+||++++||+|.+++.+|++++++|++++|+.+++ ..+++.+.+|...++|+|||+|+++||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~---~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPA---LREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHH---HHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 5899999999999999999999999999999997633 44567777785338999999999999999999999876
No 16
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.86 E-value=3.5e-21 Score=119.88 Aligned_cols=75 Identities=32% Similarity=0.561 Sum_probs=65.3
Q ss_pred HhcCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 31 LASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 31 ~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+-++++|+||++++||+|++++.+|+++|++|++++|+.+++.. ++...+|. .++|+||+||++|||++++.++.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~----~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGR----SLRAVTGA-TTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHH----HHHHHHCC-CCcCeEEECCEEEcCHHHHHHHh
Confidence 44678999999999999999999999999999999998765543 46667886 68999999999999999998763
No 17
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.85 E-value=3.6e-21 Score=117.93 Aligned_cols=72 Identities=26% Similarity=0.428 Sum_probs=64.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 35 NAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
.+|++|+.++||+|++++.+|+++|++|+++||+.+++. .+++.+.+|. .++|+||+||++|||++++.+++
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~---~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPER---KAELEERTGS-SVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHH---HHHHHHHhCC-CCcCEEEECCEEEeCHHHHHhhc
Confidence 368999999999999999999999999999999987653 4478888896 68999999999999999998875
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.85 E-value=1e-20 Score=115.51 Aligned_cols=70 Identities=29% Similarity=0.514 Sum_probs=62.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+|+||++++||+|.+++.+|++++++|+++||+.+++. ++++..+|. .++|+|||||+++||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~----~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITG----RSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhH----HHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHh
Confidence 68999999999999999999999999999999977632 256777886 68999999999999999998763
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.82 E-value=4.7e-20 Score=145.50 Aligned_cols=89 Identities=24% Similarity=0.375 Sum_probs=76.0
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHH-----HHhCCCCCccEEEECCEEEeecHHHHH
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALM-----RLLGTSPAVPVVFIGGKLVGSMDRVMA 108 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~-----~~~g~~~~vP~ifv~g~~igG~~~~~~ 108 (127)
+.+|+||++++||+|+++|++|++.||+|+++||+.++...++.+++. ..+|. .+||+|||||++|||++++..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 357999999999999999999999999999999998776555444432 33676 589999999999999999987
Q ss_pred hhHcCCcHHHHHhcCcc
Q 033109 109 SHINGTLVPLLKEAGAL 125 (127)
Q Consensus 109 ~~~~g~L~~~l~~~g~~ 125 (127)
..|+|.+++++.|+.
T Consensus 80 --~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 80 --RAGEVIARVKGSSLT 94 (410)
T ss_pred --HhCCHHHHhcCCccc
Confidence 899999999987753
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.82 E-value=6.3e-20 Score=116.01 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=60.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC-----CCcEEEEecCCCChHHHHHHHHHHhCC-CCCccEEEECCEEEeecHHHHHhh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMG-----VNPTVYELDEDPKGKDMEKALMRLLGT-SPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~-----i~~~~v~id~~~~~~~~~~~l~~~~g~-~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
|+||++++||+|.+++++|++++ ++|+++||+.+... .+++.+.+|. ..++|+|||||+++||++++.+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~---~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS---KADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH---HHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence 78999999999999999999984 56788888754322 2357777774 148999999999999999999997
Q ss_pred HcC
Q 033109 111 ING 113 (127)
Q Consensus 111 ~~g 113 (127)
+++
T Consensus 79 ~~~ 81 (86)
T TIGR02183 79 KEN 81 (86)
T ss_pred Hhc
Confidence 764
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.81 E-value=1.4e-19 Score=113.91 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=62.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHh-----cCCCcEEEEecCCCChHHHHHHHHHHhCC-CCCccEEEECCEEEeecHHHHHh
Q 033109 36 AVVIFSISSCCMCHAVKRLFCG-----MGVNPTVYELDEDPKGKDMEKALMRLLGT-SPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~-----~~i~~~~v~id~~~~~~~~~~~l~~~~g~-~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
+|+||++++||+|++++++|++ .+++|+++||+.++... +++...+|. ..++|+|||||++|||++++.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~---~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISK---ADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHH---HHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 6899999999999999999999 78999999999765322 256677773 14899999999999999999988
Q ss_pred hHc
Q 033109 110 HIN 112 (127)
Q Consensus 110 ~~~ 112 (127)
.+.
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 653
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.79 E-value=1.2e-18 Score=104.52 Aligned_cols=71 Identities=37% Similarity=0.672 Sum_probs=63.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+|++|++++||+|++++.+|++++++|.++|++.+++ ..+.+.+.+|. .++|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---LREELKELSGW-PTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---HHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHhh
Confidence 5899999999999999999999999999999987765 44578888896 58999999999999999998875
No 23
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.4e-18 Score=124.28 Aligned_cols=95 Identities=24% Similarity=0.470 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCcEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCE
Q 033109 24 PLEHIERLASENAVVIFSI-----SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGK 98 (127)
Q Consensus 24 ~~~~~~~~~~~~~v~if~~-----~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~ 98 (127)
..+.+.++++.++|++|.+ |.|.+.+++..+|+.+|++|..+||-.+++ +++.++.++. |+|+||+||+|+
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---lRqglK~fSd-WPTfPQlyI~GE 203 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---LRQGLKEFSD-WPTFPQLYVKGE 203 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---HHHHhhhhcC-CCCccceeECCE
Confidence 3448999999999999998 569999999999999999999999998876 6668988888 899999999999
Q ss_pred EEeecHHHHHhhHcCCcHHHHHhc
Q 033109 99 LVGSMDRVMASHINGTLVPLLKEA 122 (127)
Q Consensus 99 ~igG~~~~~~~~~~g~L~~~l~~~ 122 (127)
++||+|-+.+++++|+|+..|+++
T Consensus 204 FiGGlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 204 FIGGLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred eccCcHHHHHHhhcccHHHHhhcC
Confidence 999999999999999999999864
No 24
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.76 E-value=6.1e-18 Score=108.24 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=69.2
Q ss_pred EEEEEeCC------ChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCC---CCCccEEEECCEEEeecHHHH
Q 033109 37 VVIFSISS------CCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGT---SPAVPVVFIGGKLVGSMDRVM 107 (127)
Q Consensus 37 v~if~~~~------Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~---~~~vP~ifv~g~~igG~~~~~ 107 (127)
|++|+++- =..|.+++.+|+..+|+|+++||+.+++..+ ++.+.+|. +.++|+|||||++|||++++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~---em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQ---WMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHH---HHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 66777653 4678999999999999999999998766444 77777652 368999999999999999999
Q ss_pred HhhHcCCcHHHHH
Q 033109 108 ASHINGTLVPLLK 120 (127)
Q Consensus 108 ~~~~~g~L~~~l~ 120 (127)
+++++|+|.++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999986
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.75 E-value=5.2e-18 Score=100.10 Aligned_cols=60 Identities=32% Similarity=0.615 Sum_probs=54.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLV 100 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~i 100 (127)
|++|++++||+|.+++++|+++|++|+++||+.++ +.++++++.+|. .++|+|||||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~---~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE---EAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH---HHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch---hHHHHHHHHcCC-CccCEEEECCEEC
Confidence 78999999999999999999999999999999886 355578888886 6999999999986
No 26
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.68 E-value=1.6e-16 Score=97.01 Aligned_cols=64 Identities=22% Similarity=0.440 Sum_probs=54.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCE-EEeecHH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGK-LVGSMDR 105 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~-~igG~~~ 105 (127)
|+||+.++||+|++++++|+++|++|+++||+.+++..+ .++. .|. .++|+||++|+ ++|||+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~---~~~~-~g~-~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAID---YVKA-QGF-RQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHH-cCC-cccCEEEECCCcEEeccCH
Confidence 579999999999999999999999999999998765433 5554 486 58999999775 9999984
No 27
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.67 E-value=3.2e-16 Score=98.11 Aligned_cols=64 Identities=25% Similarity=0.476 Sum_probs=55.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecH
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMD 104 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~ 104 (127)
+|++|++++||+|++++.+|++.|++|+++||+.+++..+ ++.. .|. .++|+|+++|..++||+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~---~~~~-~g~-~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAE---TLRA-QGF-RQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHH-cCC-CCcCEEEECCEEEecCC
Confidence 6899999999999999999999999999999998765433 4544 475 58999999999999998
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.55 E-value=3.4e-14 Score=85.45 Aligned_cols=66 Identities=23% Similarity=0.532 Sum_probs=56.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHH
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDR 105 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~ 105 (127)
+|++|+.+|||+|++++.+|++.+++|..+|++.++.. .+++.+.+|. .++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~---~~~~~~~~~~-~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAA---REEVLKVLGQ-RGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHH---HHHHHHHhCC-CcccEEEECCEEEeeCCH
Confidence 48899999999999999999999999999999876542 2356677886 589999999999988763
No 29
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2e-14 Score=106.68 Aligned_cols=95 Identities=26% Similarity=0.483 Sum_probs=80.3
Q ss_pred HHHHHHHhc---CCcEEEEEeC------CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCC---CCCccE
Q 033109 25 LEHIERLAS---ENAVVIFSIS------SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGT---SPAVPV 92 (127)
Q Consensus 25 ~~~~~~~~~---~~~v~if~~~------~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~---~~~vP~ 92 (127)
..+.++... ...|+||+++ +--.|..++.+|+.+++.|.++||..+.. ++++|+++.|. ..+.|+
T Consensus 118 ~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~---fr~EL~~~lg~~~~~~~LPr 194 (281)
T KOG2824|consen 118 LLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE---FREELQELLGEDEKAVSLPR 194 (281)
T ss_pred hhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH---HHHHHHHHHhcccccCccCe
Confidence 334444444 4579999985 68999999999999999999999998765 55578777775 467899
Q ss_pred EEECCEEEeecHHHHHhhHcCCcHHHHHhc
Q 033109 93 VFIGGKLVGSMDRVMASHINGTLVPLLKEA 122 (127)
Q Consensus 93 ifv~g~~igG~~~~~~~~~~g~L~~~l~~~ 122 (127)
|||+|++|||.+++..|+++|+|.++|++.
T Consensus 195 VFV~GryIGgaeeV~~LnE~GkL~~lL~~~ 224 (281)
T KOG2824|consen 195 VFVKGRYIGGAEEVVRLNEEGKLGKLLKGI 224 (281)
T ss_pred EEEccEEeccHHHhhhhhhcchHHHHHhcC
Confidence 999999999999999999999999999875
No 30
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.47 E-value=3.4e-13 Score=80.94 Aligned_cols=66 Identities=30% Similarity=0.550 Sum_probs=56.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHH
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDR 105 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~ 105 (127)
+|++|+.++||+|.+++.+|++.+++|..++++.++. ..+++.+.++. .++|+|+++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~---~~~~~~~~~~~-~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPE---ALEELKKLNGY-RSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHH---HHHHHHHHcCC-cccCEEEECCEEEecCCH
Confidence 4789999999999999999999999999999987543 33356666675 589999999999999885
No 31
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.41 E-value=6.2e-13 Score=79.54 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=47.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEe
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGM-----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVG 101 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~-----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ig 101 (127)
+|++|+++|||+|.+++++|+++ ++++..+|++.++ ++.+.+|. .++|+++++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~-------~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFP-------DLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCH-------hHHHHcCC-cccCEEEECCEEEE
Confidence 58899999999999999999876 5777778877654 25567887 58999999998875
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.40 E-value=1.4e-12 Score=79.43 Aligned_cols=65 Identities=18% Similarity=0.414 Sum_probs=51.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHh-CCCCCccEEEE-CCEEEeecH
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLL-GTSPAVPVVFI-GGKLVGSMD 104 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~-g~~~~vP~ifv-~g~~igG~~ 104 (127)
+|++|+.+|||+|++++.+|++.+++|..+|++.++.... .+.... |. .++|++++ +|+.+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~---~~~~~~~~~-~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAAD---RVVSVNNGN-MTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHH---HHHHHhCCC-ceeCEEEECCCeEecCCC
Confidence 4789999999999999999999999999999987765433 455555 65 58999976 567665433
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.27 E-value=3.4e-11 Score=77.86 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=59.5
Q ss_pred cEEEEEeCCC------hhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhC--------CCCCccEEEECCEEEe
Q 033109 36 AVVIFSISSC------CMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLG--------TSPAVPVVFIGGKLVG 101 (127)
Q Consensus 36 ~v~if~~~~C------p~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g--------~~~~vP~ifv~g~~ig 101 (127)
.|.||+++.- ..|.++..+|+..+|+|+.+||..+++.+. .+++..| ...-.|+||+||+++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~---~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQ---WMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHH---HHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHH---HHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 4677776543 356789999999999999999999776554 5666553 2334589999999999
Q ss_pred ecHHHHHhhHcCCcHHHHH
Q 033109 102 SMDRVMASHINGTLVPLLK 120 (127)
Q Consensus 102 G~~~~~~~~~~g~L~~~l~ 120 (127)
+++++.++.++++|.+.|+
T Consensus 79 dye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EHHHHHHHHCTT-HHHHHT
T ss_pred eHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999986
No 34
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.11 E-value=4e-10 Score=71.59 Aligned_cols=70 Identities=24% Similarity=0.346 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCE
Q 033109 24 PLEHIERLASENAVVIFSISSCCMCHAVKRLFCGM-----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGK 98 (127)
Q Consensus 24 ~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~-----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~ 98 (127)
..+.++++-++-.|.+|+.++||+|..++.+++++ ++++..+|++..+ ++...+|. .++|.+++||+
T Consensus 3 ~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~-------e~a~~~~V-~~vPt~vidG~ 74 (89)
T cd03026 3 LLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQ-------DEVEERGI-MSVPAIFLNGE 74 (89)
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCH-------HHHHHcCC-ccCCEEEECCE
Confidence 35667766666689999999999999999998765 5778888888654 35567897 58999999998
Q ss_pred EEe
Q 033109 99 LVG 101 (127)
Q Consensus 99 ~ig 101 (127)
.++
T Consensus 75 ~~~ 77 (89)
T cd03026 75 LFG 77 (89)
T ss_pred EEE
Confidence 765
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.09 E-value=9.8e-10 Score=64.50 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=57.1
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
++|+.++||+|.+++.+|+..+++|+.++++..+.... ++...++. .++|+++.+|..+++...+.++
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~-~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPL-GKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCC-CCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999999999999987654333 35566775 5899999999999988877665
No 36
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.05 E-value=2e-09 Score=66.16 Aligned_cols=71 Identities=10% Similarity=0.231 Sum_probs=55.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--CCEEEeecHHHHHhhH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI--GGKLVGSMDRVMASHI 111 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv--~g~~igG~~~~~~~~~ 111 (127)
+++|+.+.||+|.+++.+|+++|++|+.++++..+.. ..++...++. ..+|++.. +|..+.+...|.++..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~---~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPK---RDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHH---HHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 6799999999999999999999999999999754321 2245566665 58999977 3678888888877643
No 37
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.96 E-value=6.5e-09 Score=63.88 Aligned_cols=62 Identities=24% Similarity=0.317 Sum_probs=42.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHh----cCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCE-EEeec
Q 033109 36 AVVIFSISSCCMCHAVKRLFCG----MGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGK-LVGSM 103 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~----~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~-~igG~ 103 (127)
.|++|+.+|||+|..++..|.+ ++..+....||.+.+. .+.+.+|. .++|+++++|+ .+-|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-----~~~~~~~v-~~vPt~~~~g~~~~~G~ 68 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-----QKAMEYGI-MAVPAIVINGDVEFIGA 68 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-----HHHHHcCC-ccCCEEEECCEEEEecC
Confidence 5889999999999999999865 3433444444443332 23455787 58999999997 33343
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.95 E-value=6.2e-09 Score=62.74 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=54.5
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC-CEEEeecHHHHHhhH
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG-GKLVGSMDRVMASHI 111 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~-g~~igG~~~~~~~~~ 111 (127)
.+|+.+.||+|.+++-+|...|++|+.+.++..+.. . .+ +..+. ..+|+++.+ |..+++...+.++..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~---~~-~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA-T---PI-RMIGA-KQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH-H---HH-HhcCC-CccCEEEeCCCeEeehHHHHHHHHh
Confidence 589999999999999999999999999988854322 1 12 34554 479999997 899999999887643
No 39
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.95 E-value=7e-09 Score=63.38 Aligned_cols=68 Identities=15% Similarity=0.331 Sum_probs=54.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC----CEEEeecHHHHHhh
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG----GKLVGSMDRVMASH 110 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~----g~~igG~~~~~~~~ 110 (127)
++++|+.+.||+|++++.+|...|++|++++++... .. .++ ..+. .++|+++++ |..+.....|.++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~----~~~-~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL 72 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RK----EIK-WSSY-KKVPILRVESGGDGQQLVDSSVIISTL 72 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HH----HHH-HhCC-CccCEEEECCCCCccEEEcHHHHHHHH
Confidence 578999999999999999999999999999886422 11 232 3564 589999987 78888888887763
No 40
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.89 E-value=2.4e-08 Score=60.20 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=53.8
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC-CEEEeecHHHHHh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG-GKLVGSMDRVMAS 109 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~-g~~igG~~~~~~~ 109 (127)
++|+.++||+|.+++.+|+..|++|+.++++...... .+.+.++. .++|++..+ |..+.....+.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~----~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPA----EMLAASPK-GTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCH----HHHHHCCC-CCCCEEEECCCcEEecHHHHHHh
Confidence 6899999999999999999999999999998754333 35566665 589999996 8888776666554
No 41
>PHA02125 thioredoxin-like protein
Probab=98.87 E-value=1.3e-08 Score=62.35 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=42.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEe
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVG 101 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ig 101 (127)
|++|+.+||++|+.++.+|++. .+..++||.++.. ++...++. .++|++. +|+.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~-----~l~~~~~v-~~~PT~~-~g~~~~ 57 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGV-----ELTAKHHI-RSLPTLV-NTSTLD 57 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCH-----HHHHHcCC-ceeCeEE-CCEEEE
Confidence 7899999999999999999865 4566667654432 46677887 5899986 776543
No 42
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.86 E-value=3.4e-08 Score=59.43 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=54.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+++|+.+.||+|.+++.+|+..|++|+.++++...... ++.+.... ..+|++..+|..+.....|.++.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPE----DLAELNPY-GTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCH----HHHhhCCC-CCCCEEEECCEEEEcHHHHHHHH
Confidence 36899999999999999999999999999988654433 34455554 48999988888887777776663
No 43
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.84 E-value=9.1e-09 Score=67.78 Aligned_cols=39 Identities=23% Similarity=0.548 Sum_probs=35.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKD 75 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~ 75 (127)
|+||+.++||+|++++++|++.|++|+++|+..++...+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~ 39 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKE 39 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHH
Confidence 579999999999999999999999999999998876655
No 44
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.83 E-value=1.2e-08 Score=66.38 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=35.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKD 75 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~ 75 (127)
|+||+.++||+|++++++|++.|++|+++||..++...+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~ 39 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKE 39 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHH
Confidence 579999999999999999999999999999988776655
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.80 E-value=7.8e-08 Score=60.67 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=57.0
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC-CEEEeecHHHHHh
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG-GKLVGSMDRVMAS 109 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~-g~~igG~~~~~~~ 109 (127)
...+++|+.+.||+|.+++.+|...|++|+.++++...... .+.+.++. ..+|++.++ |..+.....|.++
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~----~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPD----WFLEKNPQ-GKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcH----HHHhhCCC-CCcCEEEECCCCEEECHHHHHHh
Confidence 34589999999999999999999999999999988644222 35566665 479999998 7888877777665
No 46
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.77 E-value=2.2e-08 Score=61.53 Aligned_cols=54 Identities=20% Similarity=0.495 Sum_probs=39.7
Q ss_pred EEEEEeCCChhHHHHHH----HHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEE
Q 033109 37 VVIFSISSCCMCHAVKR----LFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLV 100 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~----~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~i 100 (127)
|.+|+ +|||+|+.+.. ++++++.++..++|+..+ + + ..+|. .++|++++||+.+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~---~----a-~~~~v-~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMN---E----I-LEAGV-TATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH---H----H-HHcCC-CcCCEEEECCEEE
Confidence 55555 99999999944 666788888998888321 1 2 23686 5899999999654
No 47
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.75 E-value=3.4e-08 Score=66.92 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=35.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKD 75 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~ 75 (127)
|+||+.++||+|++++++|++.|++|+++||..++...+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~ 40 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTID 40 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHH
Confidence 789999999999999999999999999999988766544
No 48
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.74 E-value=9.7e-08 Score=59.40 Aligned_cols=53 Identities=25% Similarity=0.619 Sum_probs=41.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC----CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECC
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMG----VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGG 97 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~----i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g 97 (127)
+|++|++++|+.|..++.+|.+.. +.++.+||+.++ ++...+|. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~-------~l~~~Y~~--~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDP-------ELFEKYGY--RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTH-------HHHHHSCT--STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCH-------HHHHHhcC--CCCEEEEcC
Confidence 489999999999999999999754 446677777443 36678884 699999998
No 49
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.73 E-value=6.5e-08 Score=58.06 Aligned_cols=70 Identities=10% Similarity=0.164 Sum_probs=52.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-CCEEEeecHHHHHh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-GGKLVGSMDRVMAS 109 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-~g~~igG~~~~~~~ 109 (127)
++|+.+.||+|.+++-+|+..|++|+.++++..... .....+.+.++. ..+|++.+ +|..+.....|..+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~-~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGE-QRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCc-cCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHH
Confidence 689999999999999999999999999988753311 011235566665 48999997 66677766666554
No 50
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.72 E-value=9e-08 Score=64.04 Aligned_cols=79 Identities=13% Similarity=0.223 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCc--EEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCC--C---hHHHHHHHHHHhCCC---CC
Q 033109 24 PLEHIERLASENA--VVIFSISSCCMCHAVKRLFCGM----GVNPTVYELDEDP--K---GKDMEKALMRLLGTS---PA 89 (127)
Q Consensus 24 ~~~~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~~----~i~~~~v~id~~~--~---~~~~~~~l~~~~g~~---~~ 89 (127)
..+.+.+.+++.. |+.|+.+|||+|+.+...|+++ ++++-.+|++.++ + ..++ .++.+..+.. .+
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~-~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDL-TAFRSRFGIPTSFMG 90 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHH-HHHHHHcCCcccCCC
Confidence 3445666666543 6779999999999988888654 5677888888543 1 1122 2344443321 35
Q ss_pred ccEEE--ECCEEEeec
Q 033109 90 VPVVF--IGGKLVGSM 103 (127)
Q Consensus 90 vP~if--v~g~~igG~ 103 (127)
+|+++ -+|+.++..
T Consensus 91 ~PT~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 91 TPTFVHITDGKQVSVR 106 (122)
T ss_pred CCEEEEEeCCeEEEEE
Confidence 99984 588766544
No 51
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.70 E-value=4.3e-08 Score=65.05 Aligned_cols=49 Identities=16% Similarity=0.436 Sum_probs=41.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhC
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLG 85 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g 85 (127)
|++|+.++||+|++++++|++.|++|+++|+..++...+....+.+.+|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLE 49 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcC
Confidence 5799999999999999999999999999999988776664445555555
No 52
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.68 E-value=7.6e-08 Score=63.44 Aligned_cols=57 Identities=23% Similarity=0.467 Sum_probs=40.9
Q ss_pred HhcCCcEEE-EEeCCChhHHHHHHHHHhcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 31 LASENAVVI-FSISSCCMCHAVKRLFCGMG-----VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 31 ~~~~~~v~i-f~~~~Cp~C~~~k~~L~~~~-----i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
+.+..++++ |+.+|||+|+.++++|++.. +.+..+|++..+ ++...++. .++|++++
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-------~l~~~~~v-~~vPt~~i 81 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-------EKAEKYGV-ERVPTTIF 81 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-------HHHHHcCC-CcCCEEEE
Confidence 444445655 47899999999999998754 345566666433 46677897 58999987
No 53
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.66 E-value=2.2e-07 Score=56.09 Aligned_cols=71 Identities=13% Similarity=0.217 Sum_probs=54.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
+++|+.+.||+|.+++.+|+..|++|+.++++..... ....++.+.+.. ..+|.+..+|..+-....+..+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~-~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGE-HLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCC-cCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999999998853321 112245566665 4799999898877777766655
No 54
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.65 E-value=2.6e-07 Score=56.30 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=56.7
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 39 IFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 39 if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+|+.++||+|.+++-+|+..|++|+.++++...... .+.+..+. ..+|++..+|..+.+...|.++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~----~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRP----EFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSH----HHHHHSTT-SBSSEEEETTEEEESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchh----HHHhhccc-ccceEEEECCEEEeCHHHHHHHH
Confidence 689999999999999999999999999998665422 35666665 58999999999999999888773
No 55
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.63 E-value=1.4e-07 Score=62.45 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=38.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLL 84 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~ 84 (127)
|+||+.++||+|++++++|++.|++|+.+|+..++......+.+.+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 789999999999999999999999999999987765554333333333
No 56
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.62 E-value=1.4e-07 Score=64.03 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=35.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDM 76 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~ 76 (127)
|+||+.++|+.|++++++|++.|++|+++|+..++-..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~e 41 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEE 41 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHH
Confidence 7899999999999999999999999999999876655443
No 57
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.61 E-value=1.3e-07 Score=61.74 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=39.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhC
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLG 85 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g 85 (127)
|+||+.++|+.|++++++|++.|++|+++|+..++-..+..+.+.+..|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 5799999999999999999999999999999887765553333333333
No 58
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.61 E-value=1.6e-07 Score=63.68 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=35.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKD 75 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~ 75 (127)
|+||+.++|+.|++++++|++.|++|+++|+..++...+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~ 40 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVD 40 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHH
Confidence 789999999999999999999999999999987765544
No 59
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.60 E-value=1.3e-07 Score=76.83 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=59.7
Q ss_pred CCCCCCCCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCCC
Q 033109 15 SSRGALGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMG-----VNPTVYELDEDPKGKDMEKALMRLLGTSPA 89 (127)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~-----i~~~~v~id~~~~~~~~~~~l~~~~g~~~~ 89 (127)
.+.+..+++..+.++++-++..|.+|.+++||||..+...++++. |..+.+|....++ +...++. .+
T Consensus 98 ~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~-------~~~~~~v-~~ 169 (517)
T PRK15317 98 GHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD-------EVEARNI-MA 169 (517)
T ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh-------HHHhcCC-cc
Confidence 344566777888888887788899999999999999999987763 4445555544443 5567787 58
Q ss_pred ccEEEECCEEEe
Q 033109 90 VPVVFIGGKLVG 101 (127)
Q Consensus 90 vP~ifv~g~~ig 101 (127)
||.+|+||+.+.
T Consensus 170 VP~~~i~~~~~~ 181 (517)
T PRK15317 170 VPTVFLNGEEFG 181 (517)
T ss_pred cCEEEECCcEEE
Confidence 999999997654
No 60
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.59 E-value=3.7e-07 Score=60.49 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=45.7
Q ss_pred HHHHHhc--CC-cE-EEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE--E
Q 033109 27 HIERLAS--EN-AV-VIFSISSCCMCHAVKRLFCGMG------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--F 94 (127)
Q Consensus 27 ~~~~~~~--~~-~v-~if~~~~Cp~C~~~k~~L~~~~------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--f 94 (127)
.+++.+. .. .+ +-|+.+||+.|+.+...|.++. +.+-.+|+|.++ .+.+.+|. .++|++ |
T Consensus 4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-------~la~~~~V-~~iPTf~~f 75 (114)
T cd02954 4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-------DFNKMYEL-YDPPTVMFF 75 (114)
T ss_pred HHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-------HHHHHcCC-CCCCEEEEE
Confidence 4455554 23 34 4499999999999999986652 234556666554 36677897 589998 4
Q ss_pred ECCEEEe
Q 033109 95 IGGKLVG 101 (127)
Q Consensus 95 v~g~~ig 101 (127)
-+|+.++
T Consensus 76 k~G~~v~ 82 (114)
T cd02954 76 FRNKHMK 82 (114)
T ss_pred ECCEEEE
Confidence 5887664
No 61
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.59 E-value=1.8e-07 Score=67.97 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE
Q 033109 19 ALGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMG-----VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV 93 (127)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~-----i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i 93 (127)
..+.+..+.++.+-++..|++|+.+|||+|..++.+++++. +.+..+|++..+ ++...+|. .++|++
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~-------~~~~~~~V-~~vPtl 190 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENP-------DLAEKYGV-MSVPKI 190 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCH-------HHHHHhCC-ccCCEE
Confidence 33444566666544455677799999999999999998753 444445555443 35567897 589999
Q ss_pred EECC
Q 033109 94 FIGG 97 (127)
Q Consensus 94 fv~g 97 (127)
++++
T Consensus 191 ~i~~ 194 (215)
T TIGR02187 191 VINK 194 (215)
T ss_pred EEec
Confidence 8865
No 62
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.58 E-value=6e-07 Score=53.78 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=53.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
+++|+.+.||+|.+++-+|...|++|+.++++..... ...+.+.+.+.. .++|++..+|..+.....+.++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGE-TRTPEFLALNPN-GEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcc-cCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999999998853211 111234555554 4799999999888777766554
No 63
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.57 E-value=2e-07 Score=75.77 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=58.0
Q ss_pred CCCCCCCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCC-----CcEEEEecCCCChHHHHHHHHHHhCCCCCc
Q 033109 16 SRGALGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGV-----NPTVYELDEDPKGKDMEKALMRLLGTSPAV 90 (127)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i-----~~~~v~id~~~~~~~~~~~l~~~~g~~~~v 90 (127)
+.+..+++..+.++++-++..|.+|.++.||||..+...++++.+ ..+.+|....+ ++...++. .+|
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~-------~~~~~~~v-~~V 171 (515)
T TIGR03140 100 HGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQ-------DEVEALGI-QGV 171 (515)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH-------HHHHhcCC-ccc
Confidence 345567777888887777888999999999999999999987643 33444444333 35566786 589
Q ss_pred cEEEECCEEEe
Q 033109 91 PVVFIGGKLVG 101 (127)
Q Consensus 91 P~ifv~g~~ig 101 (127)
|.+||||+.+.
T Consensus 172 P~~~i~~~~~~ 182 (515)
T TIGR03140 172 PAVFLNGEEFH 182 (515)
T ss_pred CEEEECCcEEE
Confidence 99999997664
No 64
>PHA02278 thioredoxin-like protein
Probab=98.52 E-value=1.2e-06 Score=57.07 Aligned_cols=71 Identities=17% Similarity=0.361 Sum_probs=47.2
Q ss_pred HHHHHHhc-CCcEE-EEEeCCChhHHHHHHHHHhc------CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EE
Q 033109 26 EHIERLAS-ENAVV-IFSISSCCMCHAVKRLFCGM------GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FI 95 (127)
Q Consensus 26 ~~~~~~~~-~~~v~-if~~~~Cp~C~~~k~~L~~~------~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv 95 (127)
+.+++.++ ..+++ .|+.+||+.|+.+...|++. .+++..+|+|.++.. ...+.+..+. .++|++ |-
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d---~~~l~~~~~I-~~iPT~i~fk 80 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD---REKAVKLFDI-MSTPVLIGYK 80 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc---cHHHHHHCCC-ccccEEEEEE
Confidence 45566655 44444 48999999999999888654 134666677765321 1146677887 589997 44
Q ss_pred CCEEE
Q 033109 96 GGKLV 100 (127)
Q Consensus 96 ~g~~i 100 (127)
+|+.+
T Consensus 81 ~G~~v 85 (103)
T PHA02278 81 DGQLV 85 (103)
T ss_pred CCEEE
Confidence 88755
No 65
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.48 E-value=1.3e-06 Score=56.41 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHHHhcC--C-cE-EEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 25 LEHIERLASE--N-AV-VIFSISSCCMCHAVKRLFCGM-----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 25 ~~~~~~~~~~--~-~v-~if~~~~Cp~C~~~k~~L~~~-----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
.+.+++.+.. + .| +.|+.+||+.|+.....|.++ ++.+-.+|+|.+++. ..+.+..+. ..+|++++
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~----~~l~~~~~V-~~~Pt~~~ 77 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST----MELCRREKI-IEVPHFLF 77 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH----HHHHHHcCC-CcCCEEEE
Confidence 3455666643 3 33 449999999999998888654 233444555544321 246677787 58998744
Q ss_pred --CCEEE
Q 033109 96 --GGKLV 100 (127)
Q Consensus 96 --~g~~i 100 (127)
+|+.+
T Consensus 78 ~~~G~~v 84 (103)
T cd02985 78 YKDGEKI 84 (103)
T ss_pred EeCCeEE
Confidence 78755
No 66
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.48 E-value=3.8e-07 Score=74.79 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=58.9
Q ss_pred CCCCCCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCcc
Q 033109 17 RGALGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGM-----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVP 91 (127)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~-----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP 91 (127)
.+..+++..+.++++=++..|.+|.+++||+|..+...+++. +|..+.+|+...++ +.+.++. .+||
T Consensus 460 ~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~-------~~~~~~v-~~vP 531 (555)
T TIGR03143 460 GQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD-------LKDEYGI-MSVP 531 (555)
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH-------HHHhCCc-eecC
Confidence 345567777777777667789999999999999988877543 57788888887653 5667787 5899
Q ss_pred EEEECCEEE
Q 033109 92 VVFIGGKLV 100 (127)
Q Consensus 92 ~ifv~g~~i 100 (127)
.++|||+.+
T Consensus 532 ~~~i~~~~~ 540 (555)
T TIGR03143 532 AIVVDDQQV 540 (555)
T ss_pred EEEECCEEE
Confidence 999999643
No 67
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.5e-07 Score=62.05 Aligned_cols=90 Identities=21% Similarity=0.324 Sum_probs=56.3
Q ss_pred CCHHHHHHHHhc-CCcEEE-EEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE
Q 033109 22 GDPLEHIERLAS-ENAVVI-FSISSCCMCHAVKRLFCGMG------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV 93 (127)
Q Consensus 22 ~~~~~~~~~~~~-~~~v~i-f~~~~Cp~C~~~k~~L~~~~------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i 93 (127)
....++-.++++ ..+|++ |+.+||..|+.+...|+++- +++-.+|+|++.+ |...++. ..+|++
T Consensus 48 ~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-------la~~Y~I-~avPtv 119 (150)
T KOG0910|consen 48 QSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-------LAEDYEI-SAVPTV 119 (150)
T ss_pred cCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-------hHhhcce-eeeeEE
Confidence 334444444554 446654 99999999999999997752 3345566666664 6677898 589998
Q ss_pred --EECCEEEeecHHHHHhhHcCCcHHHHHhc
Q 033109 94 --FIGGKLVGSMDRVMASHINGTLVPLLKEA 122 (127)
Q Consensus 94 --fv~g~~igG~~~~~~~~~~g~L~~~l~~~ 122 (127)
|.||+.+.. +..+.....|.++|++.
T Consensus 120 lvfknGe~~d~---~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 120 LVFKNGEKVDR---FVGAVPKEQLRSLIKKF 147 (150)
T ss_pred EEEECCEEeee---ecccCCHHHHHHHHHHH
Confidence 568875511 11222233466666553
No 68
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.46 E-value=1e-06 Score=56.60 Aligned_cols=65 Identities=14% Similarity=0.288 Sum_probs=40.5
Q ss_pred HHHHHhcCCc--EEEEEeCCChhHHHHHHHH-------Hhc--CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 27 HIERLASENA--VVIFSISSCCMCHAVKRLF-------CGM--GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 27 ~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L-------~~~--~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
.+.++++.++ ++.|+.+||++|+.....+ +.+ ++.+-.+|++.++.. ...+.+.++. .++|++++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~~~~~i-~~~Pti~~ 78 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPE---ITALLKRFGV-FGPPTYLF 78 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHH---HHHHHHHcCC-CCCCEEEE
Confidence 4566666665 4569999999999987654 122 233344444443322 2356677787 58998854
No 69
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.46 E-value=1.1e-06 Score=55.91 Aligned_cols=57 Identities=23% Similarity=0.462 Sum_probs=38.8
Q ss_pred EEEEEeCCChhHHHHHHHHHh----cC--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--CCEEEe
Q 033109 37 VVIFSISSCCMCHAVKRLFCG----MG--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI--GGKLVG 101 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~----~~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv--~g~~ig 101 (127)
+++|+.+||+.|+.+...|.+ ++ +.+..+|++.++ ++....+. .++|++++ +|+.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-------~l~~~~~v-~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-------EIAEAAGI-MGTPTVQFFKDKELVK 81 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-------HHHHHCCC-eeccEEEEEECCeEEE
Confidence 456889999999999988865 22 344555554433 35566786 58999854 777653
No 70
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.46 E-value=7.5e-07 Score=67.13 Aligned_cols=69 Identities=16% Similarity=0.360 Sum_probs=55.4
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 35 NAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
-.+++|....||||.+++.+|+-+|++|.+|+|+.... +++ +++.. .-||.+.+.|+..-..+-|+.+.
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r-----~eI-k~Ssy-kKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR-----QEI-KWSSY-KKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh-----hhc-ccccc-ccccEEEeccceechhHHHHHHH
Confidence 37999999999999999999999999999999985432 234 35554 47999999998777777666664
No 71
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.46 E-value=7.5e-07 Score=58.95 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=35.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHH
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKD 75 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~ 75 (127)
.|++|+.+.|+.|++++++|++.|++|+++|+..++-..+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~ 40 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAE 40 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHH
Confidence 3789999999999999999999999999999987665444
No 72
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.40 E-value=1.9e-06 Score=56.81 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=46.3
Q ss_pred HHHHHHhcC-CcE-EEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EEC
Q 033109 26 EHIERLASE-NAV-VIFSISSCCMCHAVKRLFCGM-----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FIG 96 (127)
Q Consensus 26 ~~~~~~~~~-~~v-~if~~~~Cp~C~~~k~~L~~~-----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv~ 96 (127)
+.+.+.++. ..| +.|+.+||+.|+.+...|.++ ++.+..+|++..+ .+.+..+. .++|++ |-+
T Consensus 13 ~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~-------~l~~~~~v-~~vPt~l~fk~ 84 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP-------FLVEKLNI-KVLPTVILFKN 84 (113)
T ss_pred HHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH-------HHHHHCCC-ccCCEEEEEEC
Confidence 345555543 444 448899999999999888664 3445555555543 36667787 589998 458
Q ss_pred CEEEeec
Q 033109 97 GKLVGSM 103 (127)
Q Consensus 97 g~~igG~ 103 (127)
|+.++-.
T Consensus 85 G~~v~~~ 91 (113)
T cd02989 85 GKTVDRI 91 (113)
T ss_pred CEEEEEE
Confidence 8766533
No 73
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.38 E-value=5.9e-06 Score=49.92 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=52.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+.+|+.+.||+|.+++-+|...|++|+.++++......+ +.........+|.+..+|..+.....+.++.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~----~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL 70 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSEL----LLASNPVHKKIPVLLHNGKPICESLIIVEYI 70 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHH----HHHhCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence 368999999999999999999999999998876432222 3344331137999998988888877776663
No 74
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.37 E-value=3.6e-06 Score=50.63 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=47.2
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhH
Q 033109 43 SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHI 111 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~ 111 (127)
+.||+|.+++.+|+..|++|+.++++... .+.. ..+|++..+|+.+.++..+.++.+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~-g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPT-GKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCC-cccCEEEECCEEEcCHHHHHHHHh
Confidence 48999999999999999999999988532 2233 369999999999999988877644
No 75
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1e-06 Score=66.74 Aligned_cols=64 Identities=20% Similarity=0.386 Sum_probs=48.3
Q ss_pred cCCcEEE-EEeCCChhHHHHHHHHHhc----CCC--cEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EECCEEEeec
Q 033109 33 SENAVVI-FSISSCCMCHAVKRLFCGM----GVN--PTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FIGGKLVGSM 103 (127)
Q Consensus 33 ~~~~v~i-f~~~~Cp~C~~~k~~L~~~----~i~--~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv~g~~igG~ 103 (127)
...||+| |+.|||+.|+.....|.++ +-. .-.+|+|.++. +...+|. .++|+| |++|+.|.||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-------vAaqfgi-qsIPtV~af~dGqpVdgF 113 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-------VAAQFGV-QSIPTVYAFKDGQPVDGF 113 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-------HHHHhCc-CcCCeEEEeeCCcCcccc
Confidence 4446655 9999999999999999764 333 45566666653 5667898 489998 7899999887
Q ss_pred H
Q 033109 104 D 104 (127)
Q Consensus 104 ~ 104 (127)
.
T Consensus 114 ~ 114 (304)
T COG3118 114 Q 114 (304)
T ss_pred C
Confidence 6
No 76
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.35 E-value=6.8e-07 Score=56.58 Aligned_cols=68 Identities=29% Similarity=0.444 Sum_probs=44.2
Q ss_pred HHHHhcC--Cc-EEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE--ECCE
Q 033109 28 IERLASE--NA-VVIFSISSCCMCHAVKRLFCGM----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF--IGGK 98 (127)
Q Consensus 28 ~~~~~~~--~~-v~if~~~~Cp~C~~~k~~L~~~----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if--v~g~ 98 (127)
+++.+.. .+ |+.|+.+||++|+..+..|.+. +-+.....||.... . .+.+.++. ..+|+++ -+|+
T Consensus 9 f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~----~l~~~~~v-~~~Pt~~~~~~g~ 82 (103)
T PF00085_consen 9 FEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-K----ELCKKYGV-KSVPTIIFFKNGK 82 (103)
T ss_dssp HHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-H----HHHHHTTC-SSSSEEEEEETTE
T ss_pred HHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-c----hhhhccCC-CCCCEEEEEECCc
Confidence 3444443 33 4568999999999999888653 32455555555433 1 36677887 5899985 4776
Q ss_pred EEe
Q 033109 99 LVG 101 (127)
Q Consensus 99 ~ig 101 (127)
.+.
T Consensus 83 ~~~ 85 (103)
T PF00085_consen 83 EVK 85 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 77
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.34 E-value=1.4e-06 Score=53.42 Aligned_cols=54 Identities=19% Similarity=0.456 Sum_probs=37.6
Q ss_pred cEEEEEeCCChhHHHHHHHHH----hcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEE
Q 033109 36 AVVIFSISSCCMCHAVKRLFC----GMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKL 99 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~----~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ 99 (127)
+|.+ ..++||+|..+.++++ +++++++.+++ .+.. .+ ..+|. .++|.++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~----~~-~~ygv-~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFE----EI-EKYGV-MSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHH----HH-HHTT--SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHH----HH-HHcCC-CCCCEEEECCEE
Confidence 3566 5777999998877664 55777766665 2222 24 56787 589999999974
No 78
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.32 E-value=9.1e-06 Score=49.15 Aligned_cols=72 Identities=8% Similarity=-0.003 Sum_probs=55.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+++|..+.||+|.+++-+|...|++|+.+.++..... ...+.+.+.+.. ..+|.+..+|..+.....+.++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHH
Confidence 5789999999999999999999999999988764211 111235556665 47999999998888888777764
No 79
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.31 E-value=2.9e-06 Score=54.08 Aligned_cols=65 Identities=14% Similarity=0.302 Sum_probs=44.2
Q ss_pred HHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcC-------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--C
Q 033109 26 EHIERLASENAVVIFSISSCCMCHAVKRLFCGMG-------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI--G 96 (127)
Q Consensus 26 ~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~-------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv--~ 96 (127)
+.++++++...++.|+.+|||+|+.....|.++. +.+..+|++.++ .+...++. .++|++++ +
T Consensus 9 ~~f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-------~~~~~~~i-~~~Pt~~~~~~ 80 (101)
T cd02994 9 SNWTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP-------GLSGRFFV-TALPTIYHAKD 80 (101)
T ss_pred hhHHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH-------hHHHHcCC-cccCEEEEeCC
Confidence 3456677777778899999999999998886542 333444444332 25556786 58999875 5
Q ss_pred CE
Q 033109 97 GK 98 (127)
Q Consensus 97 g~ 98 (127)
|+
T Consensus 81 g~ 82 (101)
T cd02994 81 GV 82 (101)
T ss_pred CC
Confidence 54
No 80
>PTZ00051 thioredoxin; Provisional
Probab=98.31 E-value=6.7e-06 Score=51.96 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCc--EEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--
Q 033109 25 LEHIERLASENA--VVIFSISSCCMCHAVKRLFCGM-----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-- 95 (127)
Q Consensus 25 ~~~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~~-----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-- 95 (127)
.+.++++++.++ ++.|+.+||+.|+.....|.++ ++.+-.+|++... .+.+..+. .++|++.+
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-------~~~~~~~v-~~~Pt~~~~~ 79 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS-------EVAEKENI-TSMPTFKVFK 79 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH-------HHHHHCCC-ceeeEEEEEe
Confidence 355677777665 3459999999999998888664 3334444444221 35566787 58998754
Q ss_pred CCEEEee
Q 033109 96 GGKLVGS 102 (127)
Q Consensus 96 ~g~~igG 102 (127)
+|+.++.
T Consensus 80 ~g~~~~~ 86 (98)
T PTZ00051 80 NGSVVDT 86 (98)
T ss_pred CCeEEEE
Confidence 7765543
No 81
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.30 E-value=5.1e-06 Score=57.70 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=44.3
Q ss_pred HHHHHHHhcC--Cc--EEEEEeCCChhHHHHHHHHHhc----C---CCcEEEEecCCCChHHHHHHHHHHhCCCCC----
Q 033109 25 LEHIERLASE--NA--VVIFSISSCCMCHAVKRLFCGM----G---VNPTVYELDEDPKGKDMEKALMRLLGTSPA---- 89 (127)
Q Consensus 25 ~~~~~~~~~~--~~--v~if~~~~Cp~C~~~k~~L~~~----~---i~~~~v~id~~~~~~~~~~~l~~~~g~~~~---- 89 (127)
.+.+++.+.. .+ ++.|+.+|||.|+.....|.++ + +.+-.+|++.+++ +.+..+. .+
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-------la~~~~V-~~~~~v 106 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-------VAEKFRV-STSPLS 106 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-------HHHHcCc-eecCCc
Confidence 3456666532 22 5669999999999998888543 2 3445556555542 4445565 24
Q ss_pred --ccEE--EECCEEEee
Q 033109 90 --VPVV--FIGGKLVGS 102 (127)
Q Consensus 90 --vP~i--fv~g~~igG 102 (127)
+|++ |-+|+.++.
T Consensus 107 ~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 107 KQLPTIILFQGGKEVAR 123 (152)
T ss_pred CCCCEEEEEECCEEEEE
Confidence 8987 568886643
No 82
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.27 E-value=8.7e-06 Score=52.37 Aligned_cols=69 Identities=26% Similarity=0.324 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCc--EEEEEeCCChhHHHHHHHHHhc----CCC-cEEEEecCCCChHHHHHHHHHHhCCCCCccEEE--E
Q 033109 25 LEHIERLASENA--VVIFSISSCCMCHAVKRLFCGM----GVN-PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF--I 95 (127)
Q Consensus 25 ~~~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~~----~i~-~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if--v 95 (127)
.+.++++++.++ ++.|+.+||++|+.....|.+. +-. .....++.+ . . .+.+.++. ..+|+++ -
T Consensus 7 ~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~----~~~~~~~v-~~~Pt~~~~~ 79 (102)
T cd02948 7 QEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-I----DTLKRYRG-KCEPTFLFYK 79 (102)
T ss_pred HHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-H----HHHHHcCC-CcCcEEEEEE
Confidence 345566666554 3459999999999998888653 311 233333333 1 1 24566786 5899764 4
Q ss_pred CCEEE
Q 033109 96 GGKLV 100 (127)
Q Consensus 96 ~g~~i 100 (127)
+|+.+
T Consensus 80 ~g~~~ 84 (102)
T cd02948 80 NGELV 84 (102)
T ss_pred CCEEE
Confidence 77643
No 83
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.26 E-value=8.6e-06 Score=51.91 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=50.8
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 43 SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
..||||++++-+|...|++|+.++|+....... +.+.+-. ..+|++..+|..+...+.|.++.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~----~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPED----LKDLAPG-TQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHH----HHHhCCC-CCCCEEEECCEEecCHHHHHHHH
Confidence 469999999999999999999999987654444 4455554 47999999999998888877763
No 84
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.26 E-value=9e-06 Score=49.60 Aligned_cols=56 Identities=29% Similarity=0.450 Sum_probs=40.6
Q ss_pred EEEEEeCCChhHHHHHHHHHh-----cCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--CCEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCG-----MGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI--GGKLV 100 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~-----~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv--~g~~i 100 (127)
+++|+.+||++|..+...|++ .++.+..++++... .+....+. ..+|++++ +|+.+
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~v-~~~P~~~~~~~g~~~ 76 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENP-------ELAEEYGV-RSIPTFLFFKNGKEV 76 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCCh-------hHHHhcCc-ccccEEEEEECCEEE
Confidence 667999999999999999977 45556666666533 24455676 47999876 77644
No 85
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.25 E-value=1.2e-05 Score=52.63 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=41.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EECCEEEeecHHHH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM-----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FIGGKLVGSMDRVM 107 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~-----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv~g~~igG~~~~~ 107 (127)
|+.|+.+||+.|+.+...|+++ ++.+-.+|++.. .+.+..+. .++|++ |-+|+.++.+.-..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--------~l~~~~~i-~~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--------FLVNYLDI-KVLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--------HHHHhcCC-CcCCEEEEEECCEEEEEEecHH
Confidence 3459999999999999888764 233444444422 36667787 589987 56898776544333
No 86
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.24 E-value=1.5e-05 Score=48.38 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=54.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
+++|..+.||+|.+++-+|+++|++|+.+.++...... ....+.+.... ..+|.+..||..+.....|..+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~-~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEH-NEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCcc-CCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHH
Confidence 46899999999999999999999999999887532210 11135566665 4799999999888777776654
No 87
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.23 E-value=4.3e-06 Score=55.46 Aligned_cols=73 Identities=18% Similarity=0.362 Sum_probs=46.0
Q ss_pred CHHHHHHHHhcCCc-E-EEEEeCCChhHHHHHHHHHh------cCCCcEEEEecCCCChHHHHHHHHHHhCCC-CCccEE
Q 033109 23 DPLEHIERLASENA-V-VIFSISSCCMCHAVKRLFCG------MGVNPTVYELDEDPKGKDMEKALMRLLGTS-PAVPVV 93 (127)
Q Consensus 23 ~~~~~~~~~~~~~~-v-~if~~~~Cp~C~~~k~~L~~------~~i~~~~v~id~~~~~~~~~~~l~~~~g~~-~~vP~i 93 (127)
+..+.++++...++ | +.|+.+||++|+...+.+.+ .+..|..++++.+++... ..++.. ..+|++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~------~~~~~~g~~vPt~ 80 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD------EEFSPDGGYIPRI 80 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh------hhcccCCCccceE
Confidence 35566666665554 4 44899999999999888765 234577788887654221 122321 149988
Q ss_pred E-E--CCEEEe
Q 033109 94 F-I--GGKLVG 101 (127)
Q Consensus 94 f-v--~g~~ig 101 (127)
+ + +|+.++
T Consensus 81 ~f~~~~Gk~~~ 91 (117)
T cd02959 81 LFLDPSGDVHP 91 (117)
T ss_pred EEECCCCCCch
Confidence 5 4 566554
No 88
>PRK09381 trxA thioredoxin; Provisional
Probab=98.23 E-value=4.4e-06 Score=54.02 Aligned_cols=58 Identities=16% Similarity=0.409 Sum_probs=38.9
Q ss_pred EEEEEeCCChhHHHHHHHHHh----cC--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--CCEEEee
Q 033109 37 VVIFSISSCCMCHAVKRLFCG----MG--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI--GGKLVGS 102 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~----~~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv--~g~~igG 102 (127)
++.|+.+|||+|+.....|++ ++ +.+..+|++..+ .+.+.++. .++|++++ +|+.++.
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-------~~~~~~~v-~~~Pt~~~~~~G~~~~~ 90 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-------GTAPKYGI-RGIPTLLLFKNGEVAAT 90 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-------hHHHhCCC-CcCCEEEEEeCCeEEEE
Confidence 455999999999999888764 33 334445555433 24456787 58999855 8876643
No 89
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.23 E-value=1.2e-05 Score=48.33 Aligned_cols=67 Identities=7% Similarity=0.094 Sum_probs=51.5
Q ss_pred EEEEeCCChhHHHHHHHHHh--cCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-CCEEEeecHHHHHh
Q 033109 38 VIFSISSCCMCHAVKRLFCG--MGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-GGKLVGSMDRVMAS 109 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~--~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-~g~~igG~~~~~~~ 109 (127)
.+|+.+.||+|.+++-+|.. .|++|+.+.++......+ +.+.... ..+|.+.. +|..+.....+.++
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~----~~~~~p~-~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDES----LLAVNPL-GKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChH----HHHhCCC-CCCCEEEECCCCEEECHHHHHhh
Confidence 68999999999999999999 899999999985433333 4445554 47999975 77778777766654
No 90
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.20 E-value=7.4e-06 Score=54.54 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=41.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhC
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLG 85 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g 85 (127)
.|++|+.+.|.-|++++++|+++|++|+++|+...+-..+....+.+.+|
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 48999999999999999999999999999999887766654444444555
No 91
>PRK10996 thioredoxin 2; Provisional
Probab=98.19 E-value=6.9e-06 Score=55.94 Aligned_cols=71 Identities=17% Similarity=0.374 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCc--EEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--
Q 033109 24 PLEHIERLASENA--VVIFSISSCCMCHAVKRLFCGM----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-- 95 (127)
Q Consensus 24 ~~~~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~~----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-- 95 (127)
..+.++++++..+ ++.|+.+||++|+.....|.+. +-.+..+.+|.+... .+.+.++. .++|++++
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-----~l~~~~~V-~~~Ptlii~~ 114 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-----ELSARFRI-RSIPTIMIFK 114 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-----HHHHhcCC-CccCEEEEEE
Confidence 3456677776554 4559999999999988777653 333444455443332 35667787 58999854
Q ss_pred CCEEE
Q 033109 96 GGKLV 100 (127)
Q Consensus 96 ~g~~i 100 (127)
+|+.+
T Consensus 115 ~G~~v 119 (139)
T PRK10996 115 NGQVV 119 (139)
T ss_pred CCEEE
Confidence 78755
No 92
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.19 E-value=4.5e-06 Score=54.58 Aligned_cols=56 Identities=21% Similarity=0.475 Sum_probs=37.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE--ECCEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM-------GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF--IGGKLV 100 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~-------~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if--v~g~~i 100 (127)
++.|+.+||+.|+.....+.++ ++.+..+|++..+ .+....|. .++|+++ -+|+.+
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-------~l~~~~~V-~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-------RLARKLGA-HSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-------HHHHHcCC-ccCCEEEEEECCEEE
Confidence 4559999999999888776433 3444555555432 35566787 5899875 578755
No 93
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.18 E-value=1.4e-05 Score=52.91 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCC-c--EEEEEeCCChhHHHHHHHHH-------hc--CCCcEEEEecCCCChH------HHHHHHHHHhC
Q 033109 24 PLEHIERLASEN-A--VVIFSISSCCMCHAVKRLFC-------GM--GVNPTVYELDEDPKGK------DMEKALMRLLG 85 (127)
Q Consensus 24 ~~~~~~~~~~~~-~--v~if~~~~Cp~C~~~k~~L~-------~~--~i~~~~v~id~~~~~~------~~~~~l~~~~g 85 (127)
..+.++++.+.+ + ++.|+.+|||+|++....+. .+ ++.+..++++.+.... .-...+...++
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 345667777766 4 45599999999999876542 12 2333444444331100 00125677788
Q ss_pred CCCCccEEE-EC
Q 033109 86 TSPAVPVVF-IG 96 (127)
Q Consensus 86 ~~~~vP~if-v~ 96 (127)
. .++|+++ ++
T Consensus 82 v-~~~Pt~~~~~ 92 (125)
T cd02951 82 V-RFTPTVIFLD 92 (125)
T ss_pred C-ccccEEEEEc
Confidence 7 5899964 44
No 94
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.18 E-value=3e-05 Score=46.90 Aligned_cols=70 Identities=9% Similarity=0.061 Sum_probs=54.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
++++|+.+.|+.|.+++-+|...|++|+.+.++... ..+++...+.. ..+|++..+|..+.....+..+.
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~----~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEE----WQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHH----hhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHH
Confidence 467898899999999999999999999999987521 22234455554 47999999999888888777664
No 95
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.17 E-value=8.3e-06 Score=52.05 Aligned_cols=64 Identities=17% Similarity=0.384 Sum_probs=42.0
Q ss_pred HHHHHhcCCc--EEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--C
Q 033109 27 HIERLASENA--VVIFSISSCCMCHAVKRLFCGMG------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI--G 96 (127)
Q Consensus 27 ~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~~~------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv--~ 96 (127)
.+++.+...+ ++.|+.+||++|+.....+.+.. +.+..+|++.++ .+.+..+. ..+|++++ +
T Consensus 10 ~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~-------~~~~~~~v-~~~Pt~~~~~~ 81 (101)
T cd03003 10 DFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR-------MLCRSQGV-NSYPSLYVFPS 81 (101)
T ss_pred hHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH-------HHHHHcCC-CccCEEEEEcC
Confidence 4556665544 45699999999999988886542 233445555432 35556787 48999844 6
Q ss_pred CE
Q 033109 97 GK 98 (127)
Q Consensus 97 g~ 98 (127)
|+
T Consensus 82 g~ 83 (101)
T cd03003 82 GM 83 (101)
T ss_pred CC
Confidence 65
No 96
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.17 E-value=6.5e-06 Score=54.42 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=39.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhC
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLG 85 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g 85 (127)
|++|+.+.|+-|++++++|++.|++|+++|+...+-.....+.+.+.+|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLG 49 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence 5799999999999999999999999999999887665554334444444
No 97
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.17 E-value=2.1e-05 Score=57.13 Aligned_cols=62 Identities=21% Similarity=0.425 Sum_probs=43.3
Q ss_pred cCCcEEEEEe---CCChhHHHHHHHHHhcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--CCEEE
Q 033109 33 SENAVVIFSI---SSCCMCHAVKRLFCGMG-----VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI--GGKLV 100 (127)
Q Consensus 33 ~~~~v~if~~---~~Cp~C~~~k~~L~~~~-----i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv--~g~~i 100 (127)
+...|++|+. +|||+|+.+..+|++.. +.+..+++|.+.+. .+.+.++. .++|++.+ +|+.+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~-----~l~~~~~V-~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK-----EEAEKYGV-ERVPTTIILEEGKDG 90 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH-----HHHHHcCC-CccCEEEEEeCCeee
Confidence 3445778988 99999999999997652 33456666654332 46777897 58999865 65443
No 98
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.17 E-value=7e-06 Score=54.09 Aligned_cols=49 Identities=20% Similarity=0.393 Sum_probs=39.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhC
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLG 85 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g 85 (127)
|++|+.+.|+-|++++++|++.+++|+++|+-..+-.......+.+.+|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 5799999999999999999999999999999876655443334444444
No 99
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.16 E-value=1.1e-05 Score=52.22 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHhcCCc--EEEEEeCCChhHHHHHHHHHhc------------CCCcEEEEecCCCChHHHHHHHHHHhCCCCCcc
Q 033109 26 EHIERLASENA--VVIFSISSCCMCHAVKRLFCGM------------GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVP 91 (127)
Q Consensus 26 ~~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~~------------~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP 91 (127)
+.++++++.++ ++.|+.+||++|+.....+.+. .+.+-.+|++.++ .+.+..|. .++|
T Consensus 9 ~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-------~l~~~~~v-~~~P 80 (108)
T cd02996 9 GNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-------DIADRYRI-NKYP 80 (108)
T ss_pred hhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-------HHHHhCCC-CcCC
Confidence 34566666655 4569999999999998888542 1334445555432 36677787 5899
Q ss_pred EEE--ECCE
Q 033109 92 VVF--IGGK 98 (127)
Q Consensus 92 ~if--v~g~ 98 (127)
+++ -+|+
T Consensus 81 tl~~~~~g~ 89 (108)
T cd02996 81 TLKLFRNGM 89 (108)
T ss_pred EEEEEeCCc
Confidence 985 3665
No 100
>PRK10026 arsenate reductase; Provisional
Probab=98.16 E-value=9.7e-06 Score=55.65 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=40.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhC
Q 033109 35 NAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLG 85 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g 85 (127)
..|+||+.+.|.-|++++++|++.|++|+++|+-.++-..+..+.+.+.+|
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMG 52 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhCC
Confidence 568999999999999999999999999999999877654443333333334
No 101
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.15 E-value=1.2e-05 Score=53.32 Aligned_cols=59 Identities=15% Similarity=0.392 Sum_probs=41.6
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EECCEEE
Q 033109 34 ENAVVI-FSISSCCMCHAVKRLFCGMG------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FIGGKLV 100 (127)
Q Consensus 34 ~~~v~i-f~~~~Cp~C~~~k~~L~~~~------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv~g~~i 100 (127)
...|++ |+.+|||.|+..-.+|.++. +.+-.+|+|+.++ +.+.++. ...|+. |-+|+++
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-------va~~y~I-~amPtfvffkngkh~ 81 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-------YTQYFDI-SYIPSTIFFFNGQHM 81 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-------HHHhcCc-eeCcEEEEEECCcEE
Confidence 344555 99999999999999998764 3345566666553 5666776 357775 5588877
No 102
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.14 E-value=1.2e-05 Score=57.06 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=48.4
Q ss_pred cEEE-EEeCCChhHHHHHHHHHhcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EECCEEEe---ecH
Q 033109 36 AVVI-FSISSCCMCHAVKRLFCGMG-----VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FIGGKLVG---SMD 104 (127)
Q Consensus 36 ~v~i-f~~~~Cp~C~~~k~~L~~~~-----i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv~g~~ig---G~~ 104 (127)
.|+| |+.+||+.|+.+...|.++. +.|-.++++.. .+...++. .++|++ |-+|+.++ |++
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--------~l~~~f~v-~~vPTlllyk~G~~v~~~vG~~ 155 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--------GASDEFDT-DALPALLVYKGGELIGNFVRVT 155 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--------hhHHhCCC-CCCCEEEEEECCEEEEEEechH
Confidence 4544 88999999999988886542 33444444422 35667787 489987 45898764 444
Q ss_pred HHH-HhhHcCCcHHHHHhcC
Q 033109 105 RVM-ASHINGTLVPLLKEAG 123 (127)
Q Consensus 105 ~~~-~~~~~g~L~~~l~~~g 123 (127)
+.. .-.....|+.+|...|
T Consensus 156 ~~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 156 EDLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred HhcCCCCCHHHHHHHHHhcC
Confidence 322 1223345666665544
No 103
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.13 E-value=2e-05 Score=47.05 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=52.9
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
++|+.+.|+.|.+++.+|...|++|+.+.++..+.. .....+.+.+.. ..+|++..+|..+.....|..+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~-~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGE-QLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCC-cCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHH
Confidence 578889999999999999999999999888763211 111235555665 5899999999888777766654
No 104
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.11 E-value=1.6e-05 Score=54.64 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=43.5
Q ss_pred HHHHHHHhc---CCcEEE-EEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE-
Q 033109 25 LEHIERLAS---ENAVVI-FSISSCCMCHAVKRLFCGMG------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV- 93 (127)
Q Consensus 25 ~~~~~~~~~---~~~v~i-f~~~~Cp~C~~~k~~L~~~~------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i- 93 (127)
.+++.+++. ...|++ |+.+||+.|+....+|.+.. +.+-.+|||..++ +...++.....|++
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-------la~~y~I~~~~t~~~ 83 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-------FNTMYELYDPCTVMF 83 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-------HHHHcCccCCCcEEE
Confidence 556666663 334444 99999999999999997753 2234566666553 66677874345666
Q ss_pred EE-CCE
Q 033109 94 FI-GGK 98 (127)
Q Consensus 94 fv-~g~ 98 (127)
|. +|+
T Consensus 84 ffk~g~ 89 (142)
T PLN00410 84 FFRNKH 89 (142)
T ss_pred EEECCe
Confidence 33 565
No 105
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.08 E-value=1.9e-05 Score=51.01 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=39.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCCh---------------HHHHHHHHHHhCCCCCccEE
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGM-------GVNPTVYELDEDPKG---------------KDMEKALMRLLGTSPAVPVV 93 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~-------~i~~~~v~id~~~~~---------------~~~~~~l~~~~g~~~~vP~i 93 (127)
.|++|+.+|||+|+++.+.+... .-.+..+.++..... ....+++.+..|. ..+|++
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-~gtPt~ 86 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV-NGTPTI 86 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---SSSEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC-CccCEE
Confidence 46779999999999987776531 112444444432221 1124567888897 589998
Q ss_pred EE-C--CE---EEeecHHHHH
Q 033109 94 FI-G--GK---LVGSMDRVMA 108 (127)
Q Consensus 94 fv-~--g~---~igG~~~~~~ 108 (127)
++ + |+ .+.|+-+-.+
T Consensus 87 ~~~d~~G~~v~~~~G~~~~~~ 107 (112)
T PF13098_consen 87 VFLDKDGKIVYRIPGYLSPEE 107 (112)
T ss_dssp EECTTTSCEEEEEESS--HHH
T ss_pred EEEcCCCCEEEEecCCCCHHH
Confidence 65 4 66 4456654433
No 106
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.08 E-value=3.4e-05 Score=48.51 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=43.4
Q ss_pred HHHHHhcCC--c--EEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EEC
Q 033109 27 HIERLASEN--A--VVIFSISSCCMCHAVKRLFCGM----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FIG 96 (127)
Q Consensus 27 ~~~~~~~~~--~--v~if~~~~Cp~C~~~k~~L~~~----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv~ 96 (127)
.+++++... + ++.|+.+||+.|+++...|+++ ...+..+.+|.+... ++.+.++. ..+|++ |.+
T Consensus 4 ~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-----~~~~~~~i-~~~Pt~~~~~~ 77 (97)
T cd02984 4 EFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-----EISEKFEI-TAVPTFVFFRN 77 (97)
T ss_pred HHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-----HHHHhcCC-ccccEEEEEEC
Confidence 445555433 3 4559999999999998888653 223455555544322 35566787 589987 447
Q ss_pred CEEE
Q 033109 97 GKLV 100 (127)
Q Consensus 97 g~~i 100 (127)
|+.+
T Consensus 78 g~~~ 81 (97)
T cd02984 78 GTIV 81 (97)
T ss_pred CEEE
Confidence 7654
No 107
>PRK10853 putative reductase; Provisional
Probab=98.07 E-value=1.4e-05 Score=53.29 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=34.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKD 75 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~ 75 (127)
|+||+.+.|..|++++++|++.|++|+++|+-..+-..+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~ 40 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSE 40 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHH
Confidence 789999999999999999999999999999987664444
No 108
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=98.07 E-value=1.8e-05 Score=53.34 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=34.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChH
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGK 74 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~ 74 (127)
.++||+.+.|.-|++++++|++.|++|+++|+...+-..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~ 40 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHA 40 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCH
Confidence 478999999999999999999999999999987655433
No 109
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.06 E-value=2.4e-05 Score=50.25 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCcE-EEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 24 PLEHIERLASENAV-VIFSISSCCMCHAVKRLFCGM-------GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 24 ~~~~~~~~~~~~~v-~if~~~~Cp~C~~~k~~L~~~-------~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
..+.++++.+...+ +.|+.+|||+|+.....|+++ +..+....++..... .+.+..+. .++|++++
T Consensus 5 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~I-~~~Pt~~l 78 (104)
T cd03000 5 LDDSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-----SIASEFGV-RGYPTIKL 78 (104)
T ss_pred chhhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-----hHHhhcCC-ccccEEEE
Confidence 34556665554554 459999999999888777543 222333333332221 35566787 58999843
No 110
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.05 E-value=8.2e-05 Score=46.76 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=39.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC----CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE--ECCEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMG----VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF--IGGKLV 100 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~----i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if--v~g~~i 100 (127)
++.|+.+||+.|+.....|.+.. -.+....||.+... .+.+.++. .++|+++ -+|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~l~~~~~i-~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-----QIAQQFGV-QALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-----HHHHHcCC-CCCCEEEEEeCCEEe
Confidence 45599999999999988886542 23444455544432 46667787 5899985 477654
No 111
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.05 E-value=1.7e-05 Score=50.22 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=41.9
Q ss_pred HHHHHhcCCcE-EEEEeCCChhHHHHHHHHHhc----CC---CcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--C
Q 033109 27 HIERLASENAV-VIFSISSCCMCHAVKRLFCGM----GV---NPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI--G 96 (127)
Q Consensus 27 ~~~~~~~~~~v-~if~~~~Cp~C~~~k~~L~~~----~i---~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv--~ 96 (127)
.+++.+...++ +.|+.+||++|+.....|.+. +- .+....||.+... .+.+..+. ..+|++++ +
T Consensus 9 ~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v-~~~Pt~~~~~~ 82 (102)
T cd03005 9 NFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----ELCSEFQV-RGYPTLLLFKD 82 (102)
T ss_pred HHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----hhHhhcCC-CcCCEEEEEeC
Confidence 45666655555 459999999999888777543 21 3444445443332 24556676 58999753 6
Q ss_pred CEEE
Q 033109 97 GKLV 100 (127)
Q Consensus 97 g~~i 100 (127)
|+.+
T Consensus 83 g~~~ 86 (102)
T cd03005 83 GEKV 86 (102)
T ss_pred CCee
Confidence 6533
No 112
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.04 E-value=6.1e-05 Score=47.20 Aligned_cols=56 Identities=23% Similarity=0.463 Sum_probs=37.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--CCEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM----G--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI--GGKLV 100 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~----~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv--~g~~i 100 (127)
++.|+.+||++|+.....|++. + +.+-.+|++.++ .+.+.+|. .++|++++ +|+.+
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~v-~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-------DIAAKYGI-RSIPTLLLFKNGKEV 81 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-------HHHHHcCC-CcCCEEEEEeCCcEe
Confidence 4558899999999998777653 3 334444544432 35566787 48999866 77644
No 113
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.03 E-value=1.4e-05 Score=48.10 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-CCEEEeecHHHHHhhH
Q 033109 44 SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-GGKLVGSMDRVMASHI 111 (127)
Q Consensus 44 ~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-~g~~igG~~~~~~~~~ 111 (127)
.||+|+++.-+|..+|++|+...+...++.......+.+.++. .++|.+.. +|+.+.....|.++.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHh
Confidence 4999999999999999999988774322221111136667775 58999998 8899988888877643
No 114
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.02 E-value=3.7e-05 Score=50.74 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=42.5
Q ss_pred CcEEEEEeCC--ChhHHHHHHHHHhcCCC------cEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EECCEEEeec
Q 033109 35 NAVVIFSISS--CCMCHAVKRLFCGMGVN------PTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FIGGKLVGSM 103 (127)
Q Consensus 35 ~~v~if~~~~--Cp~C~~~k~~L~~~~i~------~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv~g~~igG~ 103 (127)
..|+.|+.+| ||.|+.+..+|.++.-. +-.+|++..+ ++...++. .++|++ |-+|+.++..
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-------~la~~f~V-~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-------ALAARFGV-LRTPALLFFRDGRYVGVL 99 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-------HHHHHcCC-CcCCEEEEEECCEEEEEE
Confidence 3466688886 99999999999765322 3344555443 47778898 589998 4589877544
No 115
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.02 E-value=3.3e-05 Score=57.03 Aligned_cols=71 Identities=18% Similarity=0.381 Sum_probs=46.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc---CCCcEEEEecC---CCChH----------------------------------H
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGM---GVNPTVYELDE---DPKGK----------------------------------D 75 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~---~i~~~~v~id~---~~~~~----------------------------------~ 75 (127)
.|++|+.+.||||+++...+.++ ++.+..+.+.. +++.. +
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v~ 189 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDIA 189 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchHH
Confidence 48889999999999999998775 34444432221 11100 1
Q ss_pred HHHHHHHHhCCCCCccEEEE-CCEEEeecHHHH
Q 033109 76 MEKALMRLLGTSPAVPVVFI-GGKLVGSMDRVM 107 (127)
Q Consensus 76 ~~~~l~~~~g~~~~vP~ifv-~g~~igG~~~~~ 107 (127)
...++.+..|. ..+|++++ ||+.+.|+.+..
T Consensus 190 ~~~~la~~lgi-~gTPtiv~~~G~~~~G~~~~~ 221 (232)
T PRK10877 190 DHYALGVQFGV-QGTPAIVLSNGTLVPGYQGPK 221 (232)
T ss_pred HhHHHHHHcCC-ccccEEEEcCCeEeeCCCCHH
Confidence 12334455576 58999988 999999976443
No 116
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.02 E-value=2.4e-05 Score=52.26 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=39.9
Q ss_pred HHHHHHhcC---Cc-EEEEEe-------CCChhHHHHHHHHHh----cC--CCcEEEEecCCCChHHHHHHHHHHhCCCC
Q 033109 26 EHIERLASE---NA-VVIFSI-------SSCCMCHAVKRLFCG----MG--VNPTVYELDEDPKGKDMEKALMRLLGTSP 88 (127)
Q Consensus 26 ~~~~~~~~~---~~-v~if~~-------~~Cp~C~~~k~~L~~----~~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~ 88 (127)
+.+.+.+.. .+ ++.|+. +|||.|+.+...|++ +. +.+-.+|++..+.-......++...+...
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~ 89 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTT 89 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCccc
Confidence 344555542 34 455888 899999988877754 33 44555666554311111124555566522
Q ss_pred CccEEEE
Q 033109 89 AVPVVFI 95 (127)
Q Consensus 89 ~vP~ifv 95 (127)
++|++.+
T Consensus 90 ~iPT~~~ 96 (119)
T cd02952 90 GVPTLLR 96 (119)
T ss_pred CCCEEEE
Confidence 7999854
No 117
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.01 E-value=1.9e-05 Score=44.14 Aligned_cols=56 Identities=27% Similarity=0.562 Sum_probs=39.3
Q ss_pred EEEEEeCCChhHHHHHHHHHh-----cCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECC
Q 033109 37 VVIFSISSCCMCHAVKRLFCG-----MGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGG 97 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~-----~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g 97 (127)
+++|+.++|++|.++...+.+ .++.+..++++...+... . ....+. ..+|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~-~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK---E-LKRYGV-GGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh---H-HHhCCC-ccccEEEEEe
Confidence 468999999999999999994 456667777766554222 1 134454 4799998765
No 118
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.99 E-value=6.6e-05 Score=51.33 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=41.5
Q ss_pred HHHHhcCCc--EEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE-E--C
Q 033109 28 IERLASENA--VVIFSISSCCMCHAVKRLFCGM----G--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF-I--G 96 (127)
Q Consensus 28 ~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~~----~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if-v--~ 96 (127)
+++++...+ |+.|+.+||++|+.....|.++ + +.+..+++|.... ..+...++. ..+|+++ + +
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~-----~~~~~~~~V-~~iPt~v~~~~~ 86 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-----LPEIDRYRV-DGIPHFVFLDRE 86 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc-----HHHHHHcCC-CCCCEEEEECCC
Confidence 344444443 4459999999999998888653 2 3344555554321 134566787 5899875 4 4
Q ss_pred CEEE
Q 033109 97 GKLV 100 (127)
Q Consensus 97 g~~i 100 (127)
|+.+
T Consensus 87 G~~v 90 (142)
T cd02950 87 GNEE 90 (142)
T ss_pred CCEE
Confidence 6544
No 119
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.99 E-value=3.9e-05 Score=49.02 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=39.8
Q ss_pred HHHHHhcC-C-c-EEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--
Q 033109 27 HIERLASE-N-A-VVIFSISSCCMCHAVKRLFCGM----G--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-- 95 (127)
Q Consensus 27 ~~~~~~~~-~-~-v~if~~~~Cp~C~~~k~~L~~~----~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-- 95 (127)
.+++.+.. . . ++.|+.+||++|+.....+.+. + +.+..+|++..+ .+.+..+. ..+|++++
T Consensus 10 ~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~i-~~~Pt~~~~~ 81 (104)
T cd03004 10 DFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE-------SLCQQANI-RAYPTIRLYP 81 (104)
T ss_pred HHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH-------HHHHHcCC-CcccEEEEEc
Confidence 45555432 2 3 4559999999999998888654 2 334445555432 35566787 58999853
Q ss_pred CC
Q 033109 96 GG 97 (127)
Q Consensus 96 ~g 97 (127)
+|
T Consensus 82 ~g 83 (104)
T cd03004 82 GN 83 (104)
T ss_pred CC
Confidence 55
No 120
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.97 E-value=6.8e-05 Score=45.47 Aligned_cols=62 Identities=8% Similarity=0.159 Sum_probs=49.4
Q ss_pred EEEEEeC-------CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 37 VVIFSIS-------SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 37 v~if~~~-------~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
+++|..+ .||+|.+++.+|+..|++|+.++++.. ..... ..+|++..+|+.+.+...+.++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~-g~vPvl~~~g~~l~eS~~I~~y 69 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPK-GKLPFIELNGEKIADSELIIDH 69 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCC-CCCCEEEECCEEEcCHHHHHHH
Confidence 4677776 579999999999999999999888642 12333 4799999999999888887776
Q ss_pred h
Q 033109 110 H 110 (127)
Q Consensus 110 ~ 110 (127)
.
T Consensus 70 L 70 (75)
T cd03080 70 L 70 (75)
T ss_pred H
Confidence 3
No 121
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.97 E-value=6.8e-05 Score=44.93 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=52.8
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
++|..+.|+.|.+++-+|...|++|+.+.++..... ...+...... ..+|.+..+|..+.....|..+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~---~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWP---ELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhh---hhhhccCCcC-CCCCEEEECCEEEEecHHHHHHh
Confidence 688889999999999999999999999988753211 1124444554 47999999998888877776653
No 122
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.96 E-value=6e-05 Score=48.36 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=34.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM----G--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~----~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
++.|+.+||++|++....|.+. + +.+..+|++..+. . .+....+. .++|++++
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-~----~~~~~~~i-~~~Pt~~~ 80 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-K----PLCGKYGV-QGFPTLKV 80 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-H----HHHHHcCC-CcCCEEEE
Confidence 5669999999999988777654 2 2233445544222 1 35566787 58999864
No 123
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.95 E-value=2.5e-05 Score=50.26 Aligned_cols=54 Identities=17% Similarity=0.331 Sum_probs=35.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC---cEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVN---PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~---~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
++.|+.+||++|+.....|+++.-. ...+.||.+.+.. .+.+.++. ..+|++++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V-~~~PT~~l 78 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGV-VGFPTILL 78 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCC-eecCEEEE
Confidence 4559999999999999888665221 2334444431112 36677887 58998853
No 124
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=7.4e-05 Score=48.86 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=38.7
Q ss_pred cEEE-EEeCCChhHHHHHHHHHhcCCCc-----EEEEecCCCChHHHHHHHHHHhCCCCCccEEE--ECCE
Q 033109 36 AVVI-FSISSCCMCHAVKRLFCGMGVNP-----TVYELDEDPKGKDMEKALMRLLGTSPAVPVVF--IGGK 98 (127)
Q Consensus 36 ~v~i-f~~~~Cp~C~~~k~~L~~~~i~~-----~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if--v~g~ 98 (127)
.|++ |+.+||+.|+.+...+.++..+| -.+|+|. .. .+.+..+. ..+|++. .+|+
T Consensus 23 liVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~~----~~~~~~~V-~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 23 LVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---LE----EVAKEFNV-KAMPTFVFYKGGE 85 (106)
T ss_pred eEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---CH----hHHHhcCc-eEeeEEEEEECCE
Confidence 3444 99999999999999998875443 4456665 22 46667787 4899984 4664
No 125
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.94 E-value=0.00014 Score=44.48 Aligned_cols=71 Identities=7% Similarity=0.101 Sum_probs=52.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC---CEEEeecHHHHHhh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG---GKLVGSMDRVMASH 110 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~---g~~igG~~~~~~~~ 110 (127)
+++|+.+. |+|.+++-+|...|++|+.+.++..... ...+.+.+.... ..+|.+..+ |..+.....|.++.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~-~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL 75 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGE-QKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYL 75 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCc-ccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHH
Confidence 57898886 9999999999999999999888753211 111234455554 479999887 78887777777663
No 126
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.93 E-value=3.3e-05 Score=47.78 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=49.1
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC-CEEEeecHHHHHhhH
Q 033109 43 SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG-GKLVGSMDRVMASHI 111 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~-g~~igG~~~~~~~~~ 111 (127)
++||+|.+++-+|...|++|+.+.++..... .....+ ...+. ..+|++..+ |..+.+...|.++..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~-~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIP-PILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcc-cccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHH
Confidence 6799999999999999999999988754321 112223 33444 479999888 888888888877643
No 127
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=5.6e-05 Score=46.25 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=46.5
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChH----------HHHHHHHHHhCCCCCccEEEEC-CEEEeecHHH
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGK----------DMEKALMRLLGTSPAVPVVFIG-GKLVGSMDRV 106 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~----------~~~~~l~~~~g~~~~vP~ifv~-g~~igG~~~~ 106 (127)
++|+...||.|..++..|++++++|.+|+|..+-..- ...+..+ ..|. -.+|.+.++ |+.|=| +|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk-~~gy-iGIPall~~d~~vVl~-~Dl 81 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVK-SNGY-IGIPALLTDDGKVVLG-DDL 81 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhh-hcCc-ccceEEEeCCCcEEEe-chh
Confidence 7999999999999999999999999999998643211 1111221 2353 579999875 455544 444
No 128
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.92 E-value=0.00019 Score=48.16 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=43.5
Q ss_pred HHHHHHhcCCc-EEE-EEeCCChhHHHHHH-HHHh------cCCCcEEEEecCCC--ChHH-HHHHHHHHhCCCCCccEE
Q 033109 26 EHIERLASENA-VVI-FSISSCCMCHAVKR-LFCG------MGVNPTVYELDEDP--KGKD-MEKALMRLLGTSPAVPVV 93 (127)
Q Consensus 26 ~~~~~~~~~~~-v~i-f~~~~Cp~C~~~k~-~L~~------~~i~~~~v~id~~~--~~~~-~~~~l~~~~g~~~~vP~i 93 (127)
+.++++.+.++ |+| |+.+||++|+...+ .|.. ++-.|..+.+|.+. +... ..+.....+|. ..+|++
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~-~G~Pt~ 84 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ-GGWPLN 84 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC-CCCCEE
Confidence 34566666554 544 88999999998864 3432 34456666555533 3222 22223334575 579998
Q ss_pred EE---CCEEE
Q 033109 94 FI---GGKLV 100 (127)
Q Consensus 94 fv---~g~~i 100 (127)
.+ +|+.+
T Consensus 85 vfl~~~G~~~ 94 (124)
T cd02955 85 VFLTPDLKPF 94 (124)
T ss_pred EEECCCCCEE
Confidence 54 57777
No 129
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.91 E-value=5.7e-05 Score=54.53 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=53.3
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE-ECCEEEeecHHHHHhhHc
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF-IGGKLVGSMDRVMASHIN 112 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if-v~g~~igG~~~~~~~~~~ 112 (127)
++|+...||+|.+++-+|..+|++|+.++++..+.. . ..+..+. ..+|++. .||..+.+...|.++..+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~----~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-T----PIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch-h----HHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHH
Confidence 368889999999999999999999999887654321 1 1334443 4799997 788899999988887553
No 130
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.89 E-value=8.1e-05 Score=51.72 Aligned_cols=40 Identities=25% Similarity=0.484 Sum_probs=29.7
Q ss_pred HhcCCcEEEEEeCCChhHHHHHHHHHh----cCCCcEEEEecCC
Q 033109 31 LASENAVVIFSISSCCMCHAVKRLFCG----MGVNPTVYELDED 70 (127)
Q Consensus 31 ~~~~~~v~if~~~~Cp~C~~~k~~L~~----~~i~~~~v~id~~ 70 (127)
..+...++.|+.+|||+|++....|.+ +++.+..+++|..
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 345667888999999999998888864 4555556666653
No 131
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.88 E-value=0.00014 Score=52.41 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=55.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
.+++|+.+.||+|.+++-+|...|++|+.+.|+...... ++....-. ..+|++..+|..+--...|..+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQ----DLIDLNPY-QSVPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCH----HHHHhCCC-CCCCEEEECCEEeeCHHHHHHHH
Confidence 478999999999999999999999999999998643322 34445544 47999999998887777776653
No 132
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=2.4e-05 Score=50.22 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=63.5
Q ss_pred cEEEEEeCCChhHH------HHHHHHHhcCCCcEEEEecCCCChHHH-----HHHHHHHhCCCCCccEEEECCEEEeecH
Q 033109 36 AVVIFSISSCCMCH------AVKRLFCGMGVNPTVYELDEDPKGKDM-----EKALMRLLGTSPAVPVVFIGGKLVGSMD 104 (127)
Q Consensus 36 ~v~if~~~~Cp~C~------~~k~~L~~~~i~~~~v~id~~~~~~~~-----~~~l~~~~g~~~~vP~ifv~g~~igG~~ 104 (127)
.|.+|+.+.-+.-. .+..+|+..+|.+.++||...++.+.. ..+.+...|. ...|+||-++++.|+++
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~Gn-plPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGN-PLPPQIFNGDQYCGDYE 81 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCC-CCCcccccCccccccHH
Confidence 46667665544332 566788888999999999876654332 3344445564 57899999999999999
Q ss_pred HHHHhhHcCCcHHHHHh
Q 033109 105 RVMASHINGTLVPLLKE 121 (127)
Q Consensus 105 ~~~~~~~~g~L~~~l~~ 121 (127)
.+.+..++..|.+.|+=
T Consensus 82 ~F~ea~E~ntl~eFL~l 98 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLGL 98 (108)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 99999999999999863
No 133
>PRK10387 glutaredoxin 2; Provisional
Probab=97.87 E-value=8.2e-05 Score=53.13 Aligned_cols=70 Identities=14% Similarity=0.307 Sum_probs=53.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE-EECCEEEeecHHHHHhhHc
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV-FIGGKLVGSMDRVMASHIN 112 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i-fv~g~~igG~~~~~~~~~~ 112 (127)
+++|+.+.||+|.+++-+|+..|++|+.++++..+.. . .+ ..++. ..+|++ .-+|..+.....|..+..+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~---~~-~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-T---PI-RMIGQ-KQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-h---HH-HhcCC-cccceEEecCCeEecCHHHHHHHHHH
Confidence 3689999999999999999999999999988654321 1 12 34453 479999 4678888888888887543
No 134
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.86 E-value=7.8e-05 Score=53.60 Aligned_cols=90 Identities=11% Similarity=0.187 Sum_probs=51.2
Q ss_pred HHHHHHHhcCC---cEEE-EEeCCChhHHHHHHHHHhcCCC---cEEEEecCCCChHHHHHHHHHHhCCCCCccEEE--E
Q 033109 25 LEHIERLASEN---AVVI-FSISSCCMCHAVKRLFCGMGVN---PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF--I 95 (127)
Q Consensus 25 ~~~~~~~~~~~---~v~i-f~~~~Cp~C~~~k~~L~~~~i~---~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if--v 95 (127)
.+++..+.... .|+| |+.+||+.|+.+...|.++..+ ...+.|+.+. ....++. ..+|+++ -
T Consensus 90 ~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~--------~~~~~~i-~~lPTlliyk 160 (192)
T cd02988 90 PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ--------CIPNYPD-KNLPTILVYR 160 (192)
T ss_pred HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH--------hHhhCCC-CCCCEEEEEE
Confidence 34444444432 3554 9999999999999988765322 2333444322 1245676 4899985 4
Q ss_pred CCEEEe---ecHHHHH-hhHcCCcHHHHHhcC
Q 033109 96 GGKLVG---SMDRVMA-SHINGTLVPLLKEAG 123 (127)
Q Consensus 96 ~g~~ig---G~~~~~~-~~~~g~L~~~l~~~g 123 (127)
+|+.++ |+.++-. -.....|+.+|...|
T Consensus 161 ~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 161 NGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred CCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence 887553 4433311 122345666666554
No 135
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.84 E-value=0.00011 Score=46.55 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=38.5
Q ss_pred HHHHHh-cCCc--EEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 27 HIERLA-SENA--VVIFSISSCCMCHAVKRLFCGM----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 27 ~~~~~~-~~~~--v~if~~~~Cp~C~~~k~~L~~~----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
.+++.+ +..+ +++|+.+||++|+.....|.+. .-.+....+|.+... .+.+..+. ..+|++++
T Consensus 9 ~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~~i-~~~P~~~~ 78 (103)
T cd03001 9 NFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-----SLAQQYGV-RGFPTIKV 78 (103)
T ss_pred hHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-----HHHHHCCC-CccCEEEE
Confidence 445554 3333 5568899999999998887653 222344444433321 35566787 58998843
No 136
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.84 E-value=0.00018 Score=46.67 Aligned_cols=54 Identities=17% Similarity=0.363 Sum_probs=32.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMG-----VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF 94 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~-----i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if 94 (127)
++.|+.+|||+|++....|.+.. ..+....|+.+.+... ...+..+. ..+|+++
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~---~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE---FAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh---hHHhhcCC-CcCCEEE
Confidence 56699999999999988886542 2233444443332122 12234676 5799885
No 137
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.82 E-value=0.00011 Score=46.58 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHHhcCCc--EEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE--EC
Q 033109 27 HIERLASENA--VVIFSISSCCMCHAVKRLFCGM----G--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF--IG 96 (127)
Q Consensus 27 ~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~~----~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if--v~ 96 (127)
.+++.++.++ ++.|+.+|||+|+.....+.+. . -.+....+|.+.+... .+.+..|. ..+|+++ -+
T Consensus 9 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~i-~~~Pt~~~~~~ 84 (104)
T cd02997 9 DFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHD---ALKEEYNV-KGFPTFKYFEN 84 (104)
T ss_pred hHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccH---HHHHhCCC-ccccEEEEEeC
Confidence 3455554443 5669999999999887666433 2 2233434443332111 35566787 4799874 35
Q ss_pred CEEE
Q 033109 97 GKLV 100 (127)
Q Consensus 97 g~~i 100 (127)
|+.+
T Consensus 85 g~~~ 88 (104)
T cd02997 85 GKFV 88 (104)
T ss_pred CCee
Confidence 6544
No 138
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.81 E-value=0.00025 Score=43.93 Aligned_cols=64 Identities=17% Similarity=0.328 Sum_probs=42.1
Q ss_pred HHHHHHhcCC--cEEEEEeCCChhHHHHHHHHHh----c--CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 26 EHIERLASEN--AVVIFSISSCCMCHAVKRLFCG----M--GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 26 ~~~~~~~~~~--~v~if~~~~Cp~C~~~k~~L~~----~--~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
+.+.+.+... -+++|+.+||++|+.+...+.+ + +-.+....++.+.. ..+.+.++. ..+|++++
T Consensus 6 ~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~i-~~~Pt~~~ 77 (101)
T cd02961 6 DNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-----NDLCSEYGV-RGYPTIKL 77 (101)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-----HHHHHhCCC-CCCCEEEE
Confidence 3566666655 3566999999999999888855 3 23344455544332 146667787 58999854
No 139
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.81 E-value=8e-05 Score=46.87 Aligned_cols=62 Identities=15% Similarity=0.296 Sum_probs=37.7
Q ss_pred HHHHhcCCc--EEEEEeCCChhHHHHHHHHHhc----CC--CcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 28 IERLASENA--VVIFSISSCCMCHAVKRLFCGM----GV--NPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 28 ~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~~----~i--~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
+++.+...+ +++|+.+||+.|+.....|.+. .- .+....+|.+... .+.+.++. ..+|++++
T Consensus 6 ~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~~i-~~~P~~~~ 75 (102)
T TIGR01126 6 FDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-----DLASRFGV-SGFPTIKF 75 (102)
T ss_pred HHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-----HHHHhCCC-CcCCEEEE
Confidence 444444343 6679999999999887777543 21 2334444433321 35566787 58999854
No 140
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.79 E-value=0.0003 Score=42.48 Aligned_cols=72 Identities=8% Similarity=-0.003 Sum_probs=53.3
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+++|+.+.+++|.++.-+|...|++|+.+.++..... ...+.+...... ..+|++..+|..+-....|..+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~-~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl 72 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGE-QLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYL 72 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCC-cCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHH
Confidence 3689999999999999999999999999988754321 011134455554 47999988888777777666653
No 141
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.78 E-value=0.00016 Score=43.74 Aligned_cols=69 Identities=6% Similarity=0.033 Sum_probs=51.7
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC-CEEEeecHHHHHh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG-GKLVGSMDRVMAS 109 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~-g~~igG~~~~~~~ 109 (127)
++|+.+.||+|.+++-+|...|++|+.++++...+. ..+.+.+.+.. ..+|++..+ |..+.....|.++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~--~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~y 71 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKEN--KTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYY 71 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEeccccccc--CCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHH
Confidence 478899999999999999999999999998865321 11235555554 479999984 7777666666555
No 142
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.76 E-value=7.7e-05 Score=49.27 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=38.9
Q ss_pred hcCCc--EEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCChHHHHHHHH-HHhCCCCCccEE--EECCE
Q 033109 32 ASENA--VVIFSISSCCMCHAVKRLFCGMG------VNPTVYELDEDPKGKDMEKALM-RLLGTSPAVPVV--FIGGK 98 (127)
Q Consensus 32 ~~~~~--v~if~~~~Cp~C~~~k~~L~~~~------i~~~~v~id~~~~~~~~~~~l~-~~~g~~~~vP~i--fv~g~ 98 (127)
++.++ ++.|+.+||++|+.+...|.+.. +.+-.+|++.+++ +. +.++. .++|++ |.+|+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~-------l~~~~~~I-~~~PTl~lf~~g~ 95 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG-------KCRKQKHF-FYFPVIHLYYRSR 95 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH-------HHHHhcCC-cccCEEEEEECCc
Confidence 45554 45599999999999999887653 2334455554432 33 45676 479987 45665
No 143
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.75 E-value=0.00019 Score=52.83 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=38.4
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE--ECCEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF--IGGKLV 100 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if--v~g~~i 100 (127)
++.|+.+||++|+.....+++. +-......+|...+. .+.+.++. .++|+++ -+|+.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-----~l~~~~~I-~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-----NLAKRFAI-KGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-----HHHHHcCC-CcCCEEEEEECCEEE
Confidence 5669999999999999888654 222333344433321 46667787 5899874 478755
No 144
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.74 E-value=0.00019 Score=52.49 Aligned_cols=73 Identities=19% Similarity=0.346 Sum_probs=51.1
Q ss_pred CCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHH----hcCCCcEEEEecCCCCh----HHHHHHHHHHhCCCCCccEE
Q 033109 22 GDPLEHIERLASENAVVIFSISSCCMCHAVKRLFC----GMGVNPTVYELDEDPKG----KDMEKALMRLLGTSPAVPVV 93 (127)
Q Consensus 22 ~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~----~~~i~~~~v~id~~~~~----~~~~~~l~~~~g~~~~vP~i 93 (127)
......++++.+...+++|+.+.||+|+....+|+ ++|++...|.+|..+.. ...-..+.+..|. ..+|.+
T Consensus 109 ~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v-~~~Pal 187 (215)
T PF13728_consen 109 QKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV-KVTPAL 187 (215)
T ss_pred HHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC-CcCCEE
Confidence 33445566677788899999999999998888875 56888888888753110 0001245566787 589999
Q ss_pred EE
Q 033109 94 FI 95 (127)
Q Consensus 94 fv 95 (127)
|+
T Consensus 188 ~L 189 (215)
T PF13728_consen 188 FL 189 (215)
T ss_pred EE
Confidence 86
No 145
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.73 E-value=0.00016 Score=48.28 Aligned_cols=69 Identities=7% Similarity=0.163 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCc--EEE-EEeCCChh--HH--HHH--------HHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCC
Q 033109 25 LEHIERLASENA--VVI-FSISSCCM--CH--AVK--------RLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPA 89 (127)
Q Consensus 25 ~~~~~~~~~~~~--v~i-f~~~~Cp~--C~--~~k--------~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~ 89 (127)
.+.+++.+..++ +++ |+.+||+. |+ ... .+|+..++.+-.+|+|.++ .|++.+|. .+
T Consensus 16 ~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~-------~La~~~~I-~~ 87 (120)
T cd03065 16 EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA-------KVAKKLGL-DE 87 (120)
T ss_pred hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH-------HHHHHcCC-cc
Confidence 356777776554 444 55667754 98 333 3334446777777877665 37778898 58
Q ss_pred ccEE--EECCEEEe
Q 033109 90 VPVV--FIGGKLVG 101 (127)
Q Consensus 90 vP~i--fv~g~~ig 101 (127)
+|++ |.+|+.+.
T Consensus 88 iPTl~lfk~G~~v~ 101 (120)
T cd03065 88 EDSIYVFKDDEVIE 101 (120)
T ss_pred ccEEEEEECCEEEE
Confidence 9998 66998653
No 146
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.73 E-value=0.00015 Score=54.74 Aligned_cols=67 Identities=22% Similarity=0.414 Sum_probs=43.0
Q ss_pred HHHHhcCCcEEEEEeCCChhHHHHHHHHHh----cCCCcEEEEecCCCChH----HHHHHHHHHhCCCCCccEEEE
Q 033109 28 IERLASENAVVIFSISSCCMCHAVKRLFCG----MGVNPTVYELDEDPKGK----DMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 28 ~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~----~~i~~~~v~id~~~~~~----~~~~~l~~~~g~~~~vP~ifv 95 (127)
++++.....++.|+.+|||+|+....+|++ +++.+..+++|..+... .....+.+..|. ..+|++|+
T Consensus 161 l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV-~~vPtl~L 235 (271)
T TIGR02740 161 MKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI-RTVPAVFL 235 (271)
T ss_pred HHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC-CcCCeEEE
Confidence 344445555777999999999988888754 46656666776543110 001135567787 58999964
No 147
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.71 E-value=0.00014 Score=45.97 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=36.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----C--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM----G--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~----~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
++.|+.+||++|+.....+.+. . -.+....+|.+.+.. .+.+..+. .++|++++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~i-~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK----DLAKKYGV-SGFPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch----hhHHhCCC-CCcCEEEE
Confidence 5679999999999888877543 2 235555666544211 35556676 58999864
No 148
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.65 E-value=0.00014 Score=47.49 Aligned_cols=46 Identities=15% Similarity=0.442 Sum_probs=32.6
Q ss_pred EEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhC
Q 033109 40 FSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLG 85 (127)
Q Consensus 40 f~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g 85 (127)
|+.+.|.-|++++++|++.|++|+++|+...+-..+....+.+.+|
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 7889999999999999999999999999887666554445555556
No 149
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.63 E-value=1.2e-05 Score=54.34 Aligned_cols=75 Identities=13% Similarity=0.366 Sum_probs=39.1
Q ss_pred CCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-
Q 033109 22 GDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGM-----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI- 95 (127)
Q Consensus 22 ~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~-----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv- 95 (127)
++..+.+...-+.-.+++++.+|||+|.+...+|.+. +++.+++..|.+++ +.+.... .|. ..+|++++
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~e---l~~~~lt-~g~-~~IP~~I~~ 104 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKE---LMDQYLT-NGG-RSIPTFIFL 104 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHH---HTTTTTT--SS---SSEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChh---HHHHHHh-CCC-eecCEEEEE
Confidence 3445556666666789999999999999988888654 45555555554332 2112222 344 58999865
Q ss_pred --CCEEEe
Q 033109 96 --GGKLVG 101 (127)
Q Consensus 96 --~g~~ig 101 (127)
+|+.+|
T Consensus 105 d~~~~~lg 112 (129)
T PF14595_consen 105 DKDGKELG 112 (129)
T ss_dssp -TT--EEE
T ss_pred cCCCCEeE
Confidence 345554
No 150
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.62 E-value=0.00044 Score=49.46 Aligned_cols=72 Identities=21% Similarity=0.417 Sum_probs=45.7
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh--cCCCcEEEEec--CCCChH-----------------------------------
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCG--MGVNPTVYELD--EDPKGK----------------------------------- 74 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~--~~i~~~~v~id--~~~~~~----------------------------------- 74 (127)
...|++|+.+.||||+++...+.+ .++.+..+.+. .++...
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~~ 157 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDNP 157 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCch
Confidence 345888999999999999999974 34444443332 111110
Q ss_pred -HHHHHHHHHhCCCCCccEEEE-CCEEEeecHHH
Q 033109 75 -DMEKALMRLLGTSPAVPVVFI-GGKLVGSMDRV 106 (127)
Q Consensus 75 -~~~~~l~~~~g~~~~vP~ifv-~g~~igG~~~~ 106 (127)
.....+.+..|. .++|.+++ +|+.+.|+.+.
T Consensus 158 i~~~~~l~~~~gi-~gtPtii~~~G~~~~G~~~~ 190 (197)
T cd03020 158 VAANLALGRQLGV-NGTPTIVLADGRVVPGAPPA 190 (197)
T ss_pred HHHHHHHHHHcCC-CcccEEEECCCeEecCCCCH
Confidence 112233444565 58999988 58999888754
No 151
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.62 E-value=0.00067 Score=40.66 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=51.7
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
.+|..+..|+|.+++-+|...|++|+.++++..... ...+.+.+.... ..+|.+..+|..+.....+..+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGG-LDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecccccc-ccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHH
Confidence 588899999999999999999999999988753211 111234555565 4799998888877766665544
No 152
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.55 E-value=0.00043 Score=49.41 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=38.8
Q ss_pred cEEEEEeCCChhHHHHHHHH----HhcCCCcEEEEecCCCC-----hH-HHHHHHHHHhCC-CCCccEEEE---CCE
Q 033109 36 AVVIFSISSCCMCHAVKRLF----CGMGVNPTVYELDEDPK-----GK-DMEKALMRLLGT-SPAVPVVFI---GGK 98 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L----~~~~i~~~~v~id~~~~-----~~-~~~~~l~~~~g~-~~~vP~ifv---~g~ 98 (127)
++++|+.+|||+|++....| +++++.+.-+.+|...+ .. .-...+...+|. ...+|+.|+ +|+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 48899999999999885555 45576666666664420 00 001134455562 137999875 564
No 153
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.55 E-value=0.00052 Score=45.06 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=38.5
Q ss_pred HHHHHhcCC--c-EEEEEeCCChhHHHHHHHHHhcCCC-------cEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 27 HIERLASEN--A-VVIFSISSCCMCHAVKRLFCGMGVN-------PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 27 ~~~~~~~~~--~-v~if~~~~Cp~C~~~k~~L~~~~i~-------~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
.+++.+..+ . ++.|+.+||+.|+.....+.+..-. .....+|-+.+.. ..+.+..+. ..+|++++
T Consensus 10 ~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~---~~~~~~~~i-~~~Pt~~l 84 (114)
T cd02992 10 SFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN---VALCRDFGV-TGYPTLRY 84 (114)
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh---HHHHHhCCC-CCCCEEEE
Confidence 455555443 3 4559999999999988887654221 2333444222111 135566786 47999864
No 154
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.55 E-value=0.0012 Score=49.05 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhH
Q 033109 43 SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHI 111 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~ 111 (127)
..||+|++++-+|...|++|+.+.||......+ +.+.... ..+|++..+|..+.....|.++..
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~----fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPED----LQNLAPG-THPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHH----HHHHCcC-CCCCEEEECCEEeecHHHHHHHHH
Confidence 469999999999999999999999987654333 4455554 479999989999988888887754
No 155
>PTZ00062 glutaredoxin; Provisional
Probab=97.54 E-value=0.00045 Score=50.19 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=44.6
Q ss_pred HHHHHHHHhc--CCc-EEEEEeCCChhHHHHHHHHHhcCCC---cEEEEecCCCChHHHHHHHHHHhCCCCCccEEE--E
Q 033109 24 PLEHIERLAS--ENA-VVIFSISSCCMCHAVKRLFCGMGVN---PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF--I 95 (127)
Q Consensus 24 ~~~~~~~~~~--~~~-v~if~~~~Cp~C~~~k~~L~~~~i~---~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if--v 95 (127)
..+.+.++++ ... |..|+.+|||.|+.+..+|.++.-. +..+.|+.+ ++. ..+|++. -
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V-~~vPtfv~~~ 70 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DAN-NEYGVFEFYQ 70 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCc-ccceEEEEEE
Confidence 4566777777 344 4456789999999999999876432 455555533 566 4799763 4
Q ss_pred CCEEEeec
Q 033109 96 GGKLVGSM 103 (127)
Q Consensus 96 ~g~~igG~ 103 (127)
+|+.|+.+
T Consensus 71 ~g~~i~r~ 78 (204)
T PTZ00062 71 NSQLINSL 78 (204)
T ss_pred CCEEEeee
Confidence 78776543
No 156
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.53 E-value=0.00044 Score=42.62 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=41.9
Q ss_pred CHHHHHHHHhcCCc--EEEEEeCCChhHHHHHHHH-H-----h-cCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE
Q 033109 23 DPLEHIERLASENA--VVIFSISSCCMCHAVKRLF-C-----G-MGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV 93 (127)
Q Consensus 23 ~~~~~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L-~-----~-~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i 93 (127)
+..+.+.++-+.++ +++|+.+||++|+..++.+ . + +.-.|..+.||.+...... .+. +. .+|++
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~---~~--~~P~~ 77 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFD---RQ--GYPTF 77 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHH---HC--SSSEE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhC---Cc--cCCEE
Confidence 45566666665554 4558899999999987776 2 2 3455778888775544332 122 22 49998
Q ss_pred EE
Q 033109 94 FI 95 (127)
Q Consensus 94 fv 95 (127)
++
T Consensus 78 ~~ 79 (82)
T PF13899_consen 78 FF 79 (82)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 157
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.53 E-value=0.00077 Score=40.71 Aligned_cols=70 Identities=10% Similarity=0.163 Sum_probs=50.0
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC-CEEEeecHHHHHhh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG-GKLVGSMDRVMASH 110 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~-g~~igG~~~~~~~~ 110 (127)
.+|+.+.| .|.+++-+|...|++|+.++++.... .....++.+.... ..+|++..+ |..+.....|.++.
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTK-TQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHH
Confidence 57877766 48889999999999999988876432 1111245566665 479999887 77777777776653
No 158
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0011 Score=48.92 Aligned_cols=73 Identities=16% Similarity=0.058 Sum_probs=57.4
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhH
Q 033109 35 NAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHI 111 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~ 111 (127)
..|.+|+.-.|||-.+++-.|+..||+|+++++|-...... |.+.......+|++.-||+.|.-.-.+.++.+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~----ll~~np~hkKVPvL~Hn~k~i~ESliiveYiD 80 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEW----LLEKNPVHKKVPVLEHNGKPICESLIIVEYID 80 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHH----HHHhccccccCCEEEECCceehhhHHHHHHHH
Confidence 56999999999999999999999999999999987654443 33333222469999999999876666666644
No 159
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.45 E-value=0.00066 Score=50.95 Aligned_cols=71 Identities=11% Similarity=0.205 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCcEEEEEeCCChhHHHHHHHH----HhcCCCcEEEEecCCCChH----HHHHHHHHHhCCCCCccEEEE
Q 033109 24 PLEHIERLASENAVVIFSISSCCMCHAVKRLF----CGMGVNPTVYELDEDPKGK----DMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 24 ~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L----~~~~i~~~~v~id~~~~~~----~~~~~l~~~~g~~~~vP~ifv 95 (127)
..+.++++.+...+++|+.+.||+|++.-.+| +++|+....|.+|...... ..-..+.+..|. ..+|.+|+
T Consensus 141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v-~~~Pal~L 219 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGV-KYFPALYL 219 (256)
T ss_pred HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCC-ccCceEEE
Confidence 44566677788899999999999999887777 4578888888888652210 001135556687 57999985
No 160
>PRK15113 glutathione S-transferase; Provisional
Probab=97.44 E-value=0.0012 Score=47.50 Aligned_cols=74 Identities=11% Similarity=0.042 Sum_probs=53.9
Q ss_pred CCcEEEEEeC--CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 34 ENAVVIFSIS--SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 34 ~~~v~if~~~--~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
...+++|+.+ .||+|.+++-+|...|++|+.+.++..... ...+++.+.+-. ..||++..+|..+--...|..+
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~-~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~Y 78 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGE-HLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEY 78 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCcc-ccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHH
Confidence 3457889875 699999999999999999999988864211 111234455554 4799999999877666666655
No 161
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.39 E-value=0.0021 Score=38.43 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=50.7
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
.+|+.+. +.|.+++-+|...|++|+.+.++..... .....+.+.... ..+|.+..+|..+.....|..+.
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGE-QAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCc-cCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHH
Confidence 4677665 6789999999999999999988753110 011134455554 47999999999888888877764
No 162
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.36 E-value=0.0026 Score=42.16 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=37.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCChHHH-------------------HHHHHHHhCCCCCc
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM-------GVNPTVYELDEDPKGKDM-------------------EKALMRLLGTSPAV 90 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~-------~i~~~~v~id~~~~~~~~-------------------~~~l~~~~g~~~~v 90 (127)
++.|+.+|||.|++....|.+. +-.++.+-|..+.+...+ ...+.+.+|. ..+
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~ 100 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI-EGI 100 (131)
T ss_pred EEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC-CCC
Confidence 4558899999999877776532 123344433333322211 2356667786 579
Q ss_pred cEEEE---CCEEE
Q 033109 91 PVVFI---GGKLV 100 (127)
Q Consensus 91 P~ifv---~g~~i 100 (127)
|++++ +|+.+
T Consensus 101 P~~~lid~~G~i~ 113 (131)
T cd03009 101 PTLIILDADGEVV 113 (131)
T ss_pred CEEEEECCCCCEE
Confidence 99875 56544
No 163
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.29 E-value=0.0027 Score=38.24 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=48.5
Q ss_pred eCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 42 ISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 42 ~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
...||+|.+++-+|...|++|+.+.++..... ...++.+.... ..+|.+..+|..+.....+.++
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~--~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPD--TRARILEFSPT-GKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCcc--ccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHH
Confidence 35799999999999999999999988764321 11245555554 4799999999888777766654
No 164
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.25 E-value=0.0016 Score=48.63 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHH----hcCCCcEEEEecCCCChH----HHHHHHHHHhCCCCCccEEEE
Q 033109 24 PLEHIERLASENAVVIFSISSCCMCHAVKRLFC----GMGVNPTVYELDEDPKGK----DMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 24 ~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~----~~~i~~~~v~id~~~~~~----~~~~~l~~~~g~~~~vP~ifv 95 (127)
..+.++++.+...+++|+.+.||+|++.-.+|+ ++|+...-|.+|...... -.-.......|. ..+|.+|+
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v-~~~PAl~L 212 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV-KYFPALML 212 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC-cccceEEE
Confidence 334466777889999999999999998877775 468877778877522210 001123456676 57999985
No 165
>PLN02378 glutathione S-transferase DHAR1
Probab=97.17 E-value=0.0029 Score=45.70 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=48.4
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhH
Q 033109 43 SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHI 111 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~ 111 (127)
..||+|.++.-+|...|++|+.+.|+......+ +...+.. ..+|++..+|..+.-...|..+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~----~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQW----FLDISPQ-GKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCHH----HHHhCCC-CCCCEEEECCEEecCHHHHHHHHH
Confidence 459999999999999999999998887543332 4445554 479999999987776666666543
No 166
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.15 E-value=0.0034 Score=41.88 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=16.3
Q ss_pred EEEEEeCCChhHHHHHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCG 57 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~ 57 (127)
++.|+.+|||.|......|.+
T Consensus 21 ll~F~atwC~~C~~~~p~l~~ 41 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVE 41 (132)
T ss_pred EEEEECCCCchHHHHHHHHHH
Confidence 445889999999987766643
No 167
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.15 E-value=0.003 Score=47.50 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=48.7
Q ss_pred eCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 42 ISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 42 ~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
...||+|.++.-+|...|++|+.+.|+......+ +.+.+-. ..+|++..+|..+.....|.++.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~----fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL 133 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEW----FLKISPE-GKVPVVKLDEKWVADSDVITQAL 133 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHH----HHhhCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 3459999999999999999999988887544333 3344544 47999999998887777766654
No 168
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=97.14 E-value=0.0013 Score=46.93 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=52.3
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 39 IFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 39 if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+|+...||+|.+++-+|...|++|+.+.++...........+.+.+.. ..+|++..+|..+-....|..+.
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl 72 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYL 72 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHH
Confidence 677888999999999999999999998887421101111235555554 47999999998888777776654
No 169
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.14 E-value=0.00057 Score=43.12 Aligned_cols=62 Identities=15% Similarity=0.356 Sum_probs=36.4
Q ss_pred HHHHHhcC--Cc-EEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 27 HIERLASE--NA-VVIFSISSCCMCHAVKRLFCGMG------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 27 ~~~~~~~~--~~-v~if~~~~Cp~C~~~k~~L~~~~------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
.+++.+.. .. ++.|+.+||++|+.....|.+.. ..+....+|.+.. + +....+. .++|++++
T Consensus 9 ~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~----~~~~~~~-~~~Pt~~~ 79 (104)
T cd02995 9 NFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--D----VPSEFVV-DGFPTILF 79 (104)
T ss_pred hhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--h----hhhhccC-CCCCEEEE
Confidence 34554432 23 56699999999999888886542 1234444443332 1 3334454 47998854
No 170
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.13 E-value=0.0025 Score=51.64 Aligned_cols=66 Identities=21% Similarity=0.360 Sum_probs=41.2
Q ss_pred HHHHHHhc---CC-c-EEEEEeCCChhHHHHHHHHHhcC-------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE
Q 033109 26 EHIERLAS---EN-A-VVIFSISSCCMCHAVKRLFCGMG-------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV 93 (127)
Q Consensus 26 ~~~~~~~~---~~-~-v~if~~~~Cp~C~~~k~~L~~~~-------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i 93 (127)
+.+++++. .. . ++.|+.+||++|+.+...|.++. +.+..+|+|.++. . .....++. .++|++
T Consensus 359 ~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~---~~~~~~~I-~~~PTi 432 (463)
T TIGR00424 359 PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E---FAKQELQL-GSFPTI 432 (463)
T ss_pred HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H---HHHHHcCC-CccceE
Confidence 34555553 33 3 45599999999999998886542 3445566665432 1 12345677 489998
Q ss_pred E--ECC
Q 033109 94 F--IGG 97 (127)
Q Consensus 94 f--v~g 97 (127)
. .+|
T Consensus 433 i~Fk~g 438 (463)
T TIGR00424 433 LFFPKH 438 (463)
T ss_pred EEEECC
Confidence 4 455
No 171
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.13 E-value=0.005 Score=43.64 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=18.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~ 58 (127)
|+.|+.+|||+|++....|.++
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l 93 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQL 93 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHH
Confidence 4559999999999988887665
No 172
>PLN02473 glutathione S-transferase
Probab=97.09 E-value=0.006 Score=43.66 Aligned_cols=72 Identities=14% Similarity=0.045 Sum_probs=53.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+.+|+.+.+|+|.+++-+|..+|++|+.+.++..... ....+....+.. ..+|++..+|..|.....|..+.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~-~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLE-QKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccc-cCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHH
Confidence 5689999999999999999999999999888754210 011123334443 37999999998888887777764
No 173
>PTZ00102 disulphide isomerase; Provisional
Probab=97.06 E-value=0.0023 Score=51.19 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCc--EEEEEeCCChhHHHHHHHHHh-------cCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 25 LEHIERLASENA--VVIFSISSCCMCHAVKRLFCG-------MGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 25 ~~~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~-------~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
.+.+++.+..++ ++.|+.+||++|++....+.+ .+.++....||-..+. .+.+..+. .++|++++
T Consensus 39 ~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-----~l~~~~~i-~~~Pt~~~ 112 (477)
T PTZ00102 39 DSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-----ELAQEFGV-RGYPTIKF 112 (477)
T ss_pred hhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-----HHHHhcCC-CcccEEEE
Confidence 445666666554 566999999999988765543 2223444444433322 36667787 58999843
Q ss_pred --CCE
Q 033109 96 --GGK 98 (127)
Q Consensus 96 --~g~ 98 (127)
+|.
T Consensus 113 ~~~g~ 117 (477)
T PTZ00102 113 FNKGN 117 (477)
T ss_pred EECCc
Confidence 554
No 174
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.02 E-value=0.0025 Score=50.39 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=43.2
Q ss_pred HHHHHHhcCCc--EEEEEeCCChhHHHHHHHHHh-------cCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE--
Q 033109 26 EHIERLASENA--VVIFSISSCCMCHAVKRLFCG-------MGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF-- 94 (127)
Q Consensus 26 ~~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~-------~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if-- 94 (127)
+.++++++.++ ++.|+.+||++|++....+.+ .+-++....||-+... .+.+..|. .++|+++
T Consensus 9 ~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i-~~~Pt~~~~ 82 (462)
T TIGR01130 9 DNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-----DLAQKYGV-SGYPTLKIF 82 (462)
T ss_pred HHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH-----HHHHhCCC-ccccEEEEE
Confidence 45667777666 456999999999988776643 2322344444433331 36667787 4799984
Q ss_pred ECCEE
Q 033109 95 IGGKL 99 (127)
Q Consensus 95 v~g~~ 99 (127)
-+|+.
T Consensus 83 ~~g~~ 87 (462)
T TIGR01130 83 RNGED 87 (462)
T ss_pred eCCcc
Confidence 45654
No 175
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=97.02 E-value=0.0064 Score=38.43 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=37.9
Q ss_pred EEEEeC-CChhHH------HHHHHHH----h-c---CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEe-
Q 033109 38 VIFSIS-SCCMCH------AVKRLFC----G-M---GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVG- 101 (127)
Q Consensus 38 ~if~~~-~Cp~C~------~~k~~L~----~-~---~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ig- 101 (127)
++|+.. -|+.|. .+..+|+ + + ...++++||...++...-++...++.....-.|.|.|+|+.+|
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 467765 488884 4445553 2 2 2346788887766654333344455554345799999999998
Q ss_pred ecHHHHHh
Q 033109 102 SMDRVMAS 109 (127)
Q Consensus 102 G~~~~~~~ 109 (127)
|.-.++..
T Consensus 81 Gnp~LK~I 88 (93)
T PF07315_consen 81 GNPQLKDI 88 (93)
T ss_dssp SS--HHHH
T ss_pred CCccHHHH
Confidence 55555443
No 176
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.97 E-value=0.0076 Score=40.36 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=19.3
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCG 57 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~ 57 (127)
...|++|+.+.||+|.+....+.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 345788999999999988777665
No 177
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.96 E-value=0.0042 Score=38.04 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=38.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc------CCCcEEEEecCCCC--------------------hHHHHH-----HHHHHhC
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM------GVNPTVYELDEDPK--------------------GKDMEK-----ALMRLLG 85 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~------~i~~~~v~id~~~~--------------------~~~~~~-----~l~~~~g 85 (127)
|.+|+.+.||+|..+...+.+. ++.+..+.+..... ...+.+ .+....|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 5689999999999998888764 34455555444332 111111 2233456
Q ss_pred CCCCccEEEECC
Q 033109 86 TSPAVPVVFIGG 97 (127)
Q Consensus 86 ~~~~vP~ifv~g 97 (127)
. ..+|+++++|
T Consensus 81 ~-~g~Pt~v~~~ 91 (98)
T cd02972 81 V-TGTPTFVVNG 91 (98)
T ss_pred C-CCCCEEEECC
Confidence 5 5899999999
No 178
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.96 E-value=0.0038 Score=51.75 Aligned_cols=61 Identities=13% Similarity=0.319 Sum_probs=36.4
Q ss_pred CcEE-EEEeCCChhHHHHHHH-H------Hhc-CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE---CCEE
Q 033109 35 NAVV-IFSISSCCMCHAVKRL-F------CGM-GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI---GGKL 99 (127)
Q Consensus 35 ~~v~-if~~~~Cp~C~~~k~~-L------~~~-~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv---~g~~ 99 (127)
.+|+ .|+.+||++|+..++. + +++ ++.+-.+|++.+++. .+++.+..+. ..+|++++ +|+.
T Consensus 475 K~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~---~~~l~~~~~v-~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 475 KPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAE---DVALLKHYNV-LGLPTILFFDAQGQE 547 (571)
T ss_pred CcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChh---hHHHHHHcCC-CCCCEEEEECCCCCC
Confidence 3444 4999999999987654 2 122 233344555544322 1256667786 58999854 4554
No 179
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.94 E-value=0.004 Score=38.07 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=48.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHH--HhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMR--LLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~--~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
.++|+.+..+.|.+++-+|...|++|+.+.++..++ +. .+.. .... ..+|++.+||..+.....+..+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~---~~-~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAED---LE-KLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHH---HH-hhccccCCCC-CCCCEEEECCEEEeeHHHHHHH
Confidence 468888999999999999999999999998875321 11 1111 1112 3699999999888776666655
No 180
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.90 E-value=0.0056 Score=45.72 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=22.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc---C-CCcEEEE
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGM---G-VNPTVYE 66 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~---~-i~~~~v~ 66 (127)
.|++|+.+.||||+++..-+..+ | +.++.+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 47889999999999997776532 2 5554443
No 181
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.83 E-value=0.01 Score=38.96 Aligned_cols=22 Identities=14% Similarity=0.325 Sum_probs=18.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~ 58 (127)
|+.|+.+|||.|......|.++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 5669999999999888877654
No 182
>PLN02309 5'-adenylylsulfate reductase
Probab=96.83 E-value=0.008 Score=48.65 Aligned_cols=65 Identities=20% Similarity=0.382 Sum_probs=38.5
Q ss_pred HHHHHHHh---cCCc--EEEEEeCCChhHHHHHHHHHhcC-------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccE
Q 033109 25 LEHIERLA---SENA--VVIFSISSCCMCHAVKRLFCGMG-------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPV 92 (127)
Q Consensus 25 ~~~~~~~~---~~~~--v~if~~~~Cp~C~~~k~~L~~~~-------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ 92 (127)
.+.+++++ ...+ ++.|+.+||++|+.+...|.++. +.+..+|++... .. ...+..+. .++|+
T Consensus 352 ~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~--~~---la~~~~~I-~~~PT 425 (457)
T PLN02309 352 RAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ--KE---FAKQELQL-GSFPT 425 (457)
T ss_pred HHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc--hH---HHHhhCCC-ceeeE
Confidence 34555554 2333 56699999999999988886542 333444444211 12 12234687 48999
Q ss_pred EEE
Q 033109 93 VFI 95 (127)
Q Consensus 93 ifv 95 (127)
+++
T Consensus 426 il~ 428 (457)
T PLN02309 426 ILL 428 (457)
T ss_pred EEE
Confidence 843
No 183
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.82 E-value=0.015 Score=38.69 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=47.3
Q ss_pred HHHHHhcCCcE--EEEEe--CCCh---hHHHHHHHHHhc--CCCcEEEEecCCCChHHHHHHHHHHhCCCC--CccEE--
Q 033109 27 HIERLASENAV--VIFSI--SSCC---MCHAVKRLFCGM--GVNPTVYELDEDPKGKDMEKALMRLLGTSP--AVPVV-- 93 (127)
Q Consensus 27 ~~~~~~~~~~v--~if~~--~~Cp---~C~~~k~~L~~~--~i~~~~v~id~~~~~~~~~~~l~~~~g~~~--~vP~i-- 93 (127)
.+.+.++.++. |.|.. |||. +|+++-.-+... .+.+-.||++...+..+ +.|.+.+|. . .+|+|
T Consensus 10 nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~--~~L~~~y~I-~~~gyPTl~l 86 (116)
T cd03007 10 TFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN--MELGERYKL-DKESYPVIYL 86 (116)
T ss_pred hHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh--HHHHHHhCC-CcCCCCEEEE
Confidence 46777777764 45999 9999 998887666543 36677777765443222 368888897 4 79987
Q ss_pred EECCE
Q 033109 94 FIGGK 98 (127)
Q Consensus 94 fv~g~ 98 (127)
|.+|.
T Consensus 87 F~~g~ 91 (116)
T cd03007 87 FHGGD 91 (116)
T ss_pred EeCCC
Confidence 56663
No 184
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.80 E-value=0.0023 Score=40.42 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=35.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCChHHHHHHHHHHhCCC-CCccEEEE
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMG------VNPTVYELDEDPKGKDMEKALMRLLGTS-PAVPVVFI 95 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~------i~~~~v~id~~~~~~~~~~~l~~~~g~~-~~vP~ifv 95 (127)
-+++|+.+||+.|...+..|++.. +.+..+|++..+ .+.+..|.. ..+|++.+
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~-------~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG-------RHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH-------HHHHHcCCChhhCCEEEE
Confidence 456688999999999999987642 334444444422 255566752 27999864
No 185
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.72 E-value=0.0048 Score=38.46 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=30.0
Q ss_pred EEEEEeCCChhHHHHHHHHHh----cC--CCcEEEEecCCCChHHHHHHHHH
Q 033109 37 VVIFSISSCCMCHAVKRLFCG----MG--VNPTVYELDEDPKGKDMEKALMR 82 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~----~~--i~~~~v~id~~~~~~~~~~~l~~ 82 (127)
++.|+.+||+.|.+....|++ ++ -.+..+-|..+++..+..+.+++
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~ 56 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKK 56 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHh
Confidence 566999999999988777754 34 55667766666665555555543
No 186
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.72 E-value=0.0028 Score=44.14 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHhcCCcEEE-EEeCCChhHHHHHHHH----H---hcCCCcEEEEecCCCChHHHHHHHHH
Q 033109 27 HIERLASENAVVI-FSISSCCMCHAVKRLF----C---GMGVNPTVYELDEDPKGKDMEKALMR 82 (127)
Q Consensus 27 ~~~~~~~~~~v~i-f~~~~Cp~C~~~k~~L----~---~~~i~~~~v~id~~~~~~~~~~~l~~ 82 (127)
.+.+.+...-|.+ |+..|||.|+..-..| . +.+.+++++=|+++.+..++...+..
T Consensus 26 ~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~ 89 (157)
T KOG2501|consen 26 LASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLE 89 (157)
T ss_pred hHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHh
Confidence 3455555544444 6678999999544433 3 33556899999988877766555554
No 187
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.019 Score=36.67 Aligned_cols=77 Identities=12% Similarity=0.197 Sum_probs=46.0
Q ss_pred cCCcEEEEEeC-CChhHH------HHHHHHH----hc--CCC--cEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECC
Q 033109 33 SENAVVIFSIS-SCCMCH------AVKRLFC----GM--GVN--PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGG 97 (127)
Q Consensus 33 ~~~~v~if~~~-~Cp~C~------~~k~~L~----~~--~i~--~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g 97 (127)
+..++++|+.. -|..|. ....+|+ +. +.+ |+++||...+......+...++.....-.|.|.|+|
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivved 82 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVED 82 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcc
Confidence 45578889875 488884 4444553 32 333 577777654544433333333434334679999999
Q ss_pred EEEe-ecHHHHHh
Q 033109 98 KLVG-SMDRVMAS 109 (127)
Q Consensus 98 ~~ig-G~~~~~~~ 109 (127)
+.|+ |.-.+++.
T Consensus 83 eiVaeGnprlKdi 95 (106)
T COG4837 83 EIVAEGNPRLKDI 95 (106)
T ss_pred eEeecCCchHHHH
Confidence 9997 55455443
No 188
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.65 E-value=0.0098 Score=43.19 Aligned_cols=68 Identities=24% Similarity=0.443 Sum_probs=38.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC----cEEEEecC-----------CCChHHHHHHHHHHhCC-CCCccEEEECC-EE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVN----PTVYELDE-----------DPKGKDMEKALMRLLGT-SPAVPVVFIGG-KL 99 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~----~~~v~id~-----------~~~~~~~~~~l~~~~g~-~~~vP~ifv~g-~~ 99 (127)
|.+|++.+|+.|-.|-++|.++.-. .--..||- .++..+.++...+..|. ....|+++||| ++
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 5789999999999999999776322 11223322 23333455566666553 23579999999 56
Q ss_pred EeecH
Q 033109 100 VGSMD 104 (127)
Q Consensus 100 igG~~ 104 (127)
.+|++
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 66766
No 189
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.014 Score=42.51 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 44 SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 44 ~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
.||+|.++...|-..+++|....||....... ++.+++. ..+|.+-.||+.+-..+.|.+.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~----f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~ 80 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEW----FLDISPG-GKPPVLKFDEKWVTDSDKIEEF 80 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHH----HHhhCCC-CCCCeEEeCCceeccHHHHHHH
Confidence 59999999999999999998888887766655 6677775 5799999999999888877665
No 190
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=96.59 E-value=0.012 Score=35.74 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhH
Q 033109 43 SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHI 111 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~ 111 (127)
+.+|+|-++..+|+-.+++|+.+... ++.. +.. ..+|.|..+|+.|+|++.++++.+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~~----------sp~-gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPWR----------SPT-GKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCCC----------CCC-CccCEEEECCEEecChHHHHHHHH
Confidence 45899999999999999999766333 2221 111 259999999999999999988743
No 191
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0073 Score=49.15 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCcEE--EEEeCCChhHHH-------HHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE-
Q 033109 24 PLEHIERLASENAVV--IFSISSCCMCHA-------VKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV- 93 (127)
Q Consensus 24 ~~~~~~~~~~~~~v~--if~~~~Cp~C~~-------~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i- 93 (127)
..+.+.+.+..+.++ -|+.|||.+|.+ +-..|.+.+-+.....||-..+. .+...++. ..+|++
T Consensus 31 t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~-----~~~~~y~v-~gyPTlk 104 (493)
T KOG0190|consen 31 TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES-----DLASKYEV-RGYPTLK 104 (493)
T ss_pred ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh-----hhHhhhcC-CCCCeEE
Confidence 345688899988865 499999999984 44556666555556666654431 46777887 489997
Q ss_pred -EECCEE
Q 033109 94 -FIGGKL 99 (127)
Q Consensus 94 -fv~g~~ 99 (127)
|.+|+.
T Consensus 105 iFrnG~~ 111 (493)
T KOG0190|consen 105 IFRNGRS 111 (493)
T ss_pred EEecCCc
Confidence 678874
No 192
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.54 E-value=0.0088 Score=37.45 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=18.5
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~ 58 (127)
+.-+++|+.+|||+|.+....|.++
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred CEEEEEeecccChhHHHHhHHHHHH
Confidence 3446678899999999776666543
No 193
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.013 Score=41.01 Aligned_cols=75 Identities=12% Similarity=0.300 Sum_probs=42.1
Q ss_pred HHHHHHhcCCc--EEEEEeCCChhHHHHHHHHHhc---------CCCcEEEEecCC---------CChHHHHHHHHHHhC
Q 033109 26 EHIERLASENA--VVIFSISSCCMCHAVKRLFCGM---------GVNPTVYELDED---------PKGKDMEKALMRLLG 85 (127)
Q Consensus 26 ~~~~~~~~~~~--v~if~~~~Cp~C~~~k~~L~~~---------~i~~~~v~id~~---------~~~~~~~~~l~~~~g 85 (127)
+..+.+....+ ++||..++|+||.+.++-+..- +..+-++++... .+...-.++|++..+
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA 112 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc
Confidence 44444444444 7789999999999887766321 111222233221 111112347888888
Q ss_pred CCCCccEEE-EC--CEEEe
Q 033109 86 TSPAVPVVF-IG--GKLVG 101 (127)
Q Consensus 86 ~~~~vP~if-v~--g~~ig 101 (127)
. +++|+++ .+ |+.|+
T Consensus 113 v-rstPtfvFfdk~Gk~Il 130 (182)
T COG2143 113 V-RSTPTFVFFDKTGKTIL 130 (182)
T ss_pred c-ccCceEEEEcCCCCEEE
Confidence 7 4899875 44 45554
No 194
>PRK10357 putative glutathione S-transferase; Provisional
Probab=96.53 E-value=0.012 Score=41.68 Aligned_cols=68 Identities=7% Similarity=-0.012 Sum_probs=50.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-CCEEEeecHHHHHhh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-GGKLVGSMDRVMASH 110 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-~g~~igG~~~~~~~~ 110 (127)
.+|+.+.||++++++-+|...|++|+.++++....... +.+.+.. ..+|++.. +|..+-....|..+.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~----~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL 70 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNG----VAQYNPL-GKVPALVTEEGECWFDSPIIAEYI 70 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchh----hhhcCCc-cCCCeEEeCCCCeeecHHHHHHHH
Confidence 58899999999999999999999999988876433222 3344554 47999985 676666666666543
No 195
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.53 E-value=0.013 Score=38.16 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=44.9
Q ss_pred CCHHHHHHHHhcCCc-E-EEEEeCCChhHHHHHH-HHHhc------CCCcEEEEecCC-CChHHHHHHHHHHhCCCCCcc
Q 033109 22 GDPLEHIERLASENA-V-VIFSISSCCMCHAVKR-LFCGM------GVNPTVYELDED-PKGKDMEKALMRLLGTSPAVP 91 (127)
Q Consensus 22 ~~~~~~~~~~~~~~~-v-~if~~~~Cp~C~~~k~-~L~~~------~i~~~~v~id~~-~~~~~~~~~l~~~~g~~~~vP 91 (127)
++..+.++.+-+.++ + +.+..+||++|+...+ +|.+- +-.|..+.+|.. +++. .+...++. ..+|
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~----~~~~~~~~-~~~P 78 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQ----RFLQSYKV-DKYP 78 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHH----HHHHHhCc-cCCC
Confidence 455666777776665 3 3477899999998744 55432 223555555543 2333 46667776 5799
Q ss_pred EEE-E---CCEEE
Q 033109 92 VVF-I---GGKLV 100 (127)
Q Consensus 92 ~if-v---~g~~i 100 (127)
++. + +|+.+
T Consensus 79 ~~~~i~~~~g~~l 91 (114)
T cd02958 79 HIAIIDPRTGEVL 91 (114)
T ss_pred eEEEEeCccCcEe
Confidence 984 4 45544
No 196
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.49 E-value=0.018 Score=41.01 Aligned_cols=30 Identities=13% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEeCCChhHHHHHHHHH----hcCCCcEEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFC----GMGVNPTVYE 66 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~----~~~i~~~~v~ 66 (127)
|+.|+.+|||.|++....+. +.++.+..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 45599999999998766664 3344444443
No 197
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.45 E-value=0.016 Score=39.91 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=19.1
Q ss_pred cCCcEE-EEEeCCChhHHHHHHHHHh
Q 033109 33 SENAVV-IFSISSCCMCHAVKRLFCG 57 (127)
Q Consensus 33 ~~~~v~-if~~~~Cp~C~~~k~~L~~ 57 (127)
+...|+ -|+.+|||.|++....|.+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHH
Confidence 444444 4899999999999888865
No 198
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.012 Score=42.05 Aligned_cols=71 Identities=10% Similarity=0.122 Sum_probs=52.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCE-EEeecHHHHHhhH
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGK-LVGSMDRVMASHI 111 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~-~igG~~~~~~~~~ 111 (127)
++|+.+.+|+|.++.-.+.++|++|+.+.|+... ......+...+.. ..||++..+|- .+-....|.++..
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~ 73 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLA 73 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHH
Confidence 5788888899999999999999999999998874 1111235555554 47999998764 5666666666644
No 199
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.34 E-value=0.017 Score=43.47 Aligned_cols=84 Identities=7% Similarity=0.136 Sum_probs=57.3
Q ss_pred cCCCCCCCCCCCCHHHHHHHHhcCCcEEEEEeC-------CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHH
Q 033109 11 SYMPSSRGALGGDPLEHIERLASENAVVIFSIS-------SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRL 83 (127)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~if~~~-------~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~ 83 (127)
.+.+.|+....+. -.++-.+..-|.+|.-+ -.|+|-++..+|+-.+|+|+.++-.... +
T Consensus 23 ~f~t~ps~~~~p~---~hk~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~~-----------r 88 (281)
T KOG4244|consen 23 KFFTKPSINPKPK---IHKTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLKR-----------R 88 (281)
T ss_pred eeecCccCCCCcc---chhhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccccee-----------e
Confidence 3445544443333 23344555567777653 3689999999999999999998866421 1
Q ss_pred hCCCCCccEEEECCEEEeecHHHHHh
Q 033109 84 LGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 84 ~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
+.. .++|-|-+||++|.+.+-+..-
T Consensus 89 Sr~-G~lPFIELNGe~iaDS~~I~~~ 113 (281)
T KOG4244|consen 89 SRN-GTLPFIELNGEHIADSDLIEDR 113 (281)
T ss_pred ccC-CCcceEEeCCeeccccHHHHHH
Confidence 222 3799999999999998866543
No 200
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.34 E-value=0.029 Score=38.64 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=36.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc----C-CCcEEEEecCCCChHHH-----------------HHHHHHHhCCCCCccEE
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGM----G-VNPTVYELDEDPKGKDM-----------------EKALMRLLGTSPAVPVV 93 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~----~-i~~~~v~id~~~~~~~~-----------------~~~l~~~~g~~~~vP~i 93 (127)
-++.|+.+|||+|+.....|.+. + -.+..+-|+.+....++ ...+.+.+|. ..+|.+
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v-~~~P~~ 142 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV-GPLPTT 142 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC-CCcCeE
Confidence 35668899999999866665433 2 12344444433332221 1245556776 478976
Q ss_pred E-E--CCEEE
Q 033109 94 F-I--GGKLV 100 (127)
Q Consensus 94 f-v--~g~~i 100 (127)
| | +|+.+
T Consensus 143 ~lid~~g~i~ 152 (173)
T PRK03147 143 FLIDKDGKVV 152 (173)
T ss_pred EEECCCCcEE
Confidence 5 5 46654
No 201
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0096 Score=44.60 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=41.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCC-----cEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EECCEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVN-----PTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FIGGKLV 100 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~-----~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv~g~~i 100 (127)
+|=|+.+||..|+++-.+|..+.-+ |-.||||+-.. .+.-.|. ...|+. |.+|..|
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~-------taa~~gV-~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG-------TAATNGV-NAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc-------hhhhcCc-ccCceEEEEecCeEe
Confidence 3449999999999999999877443 56677776544 3345676 478886 6799766
No 202
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0093 Score=42.58 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=51.2
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-CCEEEeecHHHHHhhH
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-GGKLVGSMDRVMASHI 111 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-~g~~igG~~~~~~~~~ 111 (127)
.+|...-||||.+++-++-=+||+++..-++-+++..- -+..|. ..||.+.- +|++.+-.=|++.+..
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp-----~rmiG~-KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP-----IRMIGQ-KQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccCh-----hhhhcc-cccceEEccccccchhhhHHHHHHH
Confidence 36888999999999999999999988777665544322 245686 48999874 6788877667777654
No 203
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.19 E-value=0.012 Score=37.81 Aligned_cols=22 Identities=14% Similarity=0.510 Sum_probs=17.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~ 58 (127)
|+.|+.+|||.|+.....|+++
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~ 46 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSI 46 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHH
Confidence 5568999999999887777654
No 204
>PTZ00102 disulphide isomerase; Provisional
Probab=96.19 E-value=0.0092 Score=47.71 Aligned_cols=62 Identities=10% Similarity=0.280 Sum_probs=36.9
Q ss_pred HHHHHHh-cCCc--EEEEEeCCChhHHHHHHHHHhcC--------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE
Q 033109 26 EHIERLA-SENA--VVIFSISSCCMCHAVKRLFCGMG--------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF 94 (127)
Q Consensus 26 ~~~~~~~-~~~~--v~if~~~~Cp~C~~~k~~L~~~~--------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if 94 (127)
+.+++.+ +..+ ++.|+.+||++|+.....|.+.. +.+..+|.+.++. .....+. ..+|+++
T Consensus 365 ~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-------~~~~~~v-~~~Pt~~ 436 (477)
T PTZ00102 365 NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-------PLEEFSW-SAFPTIL 436 (477)
T ss_pred cchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-------chhcCCC-cccCeEE
Confidence 3445543 3333 45599999999999998886642 2233344444332 2334565 4799985
Q ss_pred E
Q 033109 95 I 95 (127)
Q Consensus 95 v 95 (127)
+
T Consensus 437 ~ 437 (477)
T PTZ00102 437 F 437 (477)
T ss_pred E
Confidence 4
No 205
>smart00594 UAS UAS domain.
Probab=96.18 E-value=0.095 Score=34.60 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHhcCCc--EEEEEeCCChhHHHHHH-HHHhc------CCCcEEEEecCC-CChHHHHHHHHHHhCCC
Q 033109 18 GALGGDPLEHIERLASENA--VVIFSISSCCMCHAVKR-LFCGM------GVNPTVYELDED-PKGKDMEKALMRLLGTS 87 (127)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~--v~if~~~~Cp~C~~~k~-~L~~~------~i~~~~v~id~~-~~~~~~~~~l~~~~g~~ 87 (127)
........+.++++.+..+ ++.+..+||++|+...+ +|.+- +-.|...-+|.. +++. .+...++.
T Consensus 10 ~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~----~l~~~~~~- 84 (122)
T smart00594 10 LFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQ----RVSQFYKL- 84 (122)
T ss_pred ceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHH----HHHHhcCc-
Confidence 3455677788888877754 45577899999997543 44332 223444344433 2332 46677786
Q ss_pred CCccEEEE
Q 033109 88 PAVPVVFI 95 (127)
Q Consensus 88 ~~vP~ifv 95 (127)
.++|.+.+
T Consensus 85 ~~~P~~~~ 92 (122)
T smart00594 85 DSFPYVAI 92 (122)
T ss_pred CCCCEEEE
Confidence 58999854
No 206
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=96.16 E-value=0.028 Score=39.31 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=17.6
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~ 58 (127)
++.|+.+|||.|++....|+++
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHH
Confidence 4558899999999887777654
No 207
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.15 E-value=0.024 Score=36.86 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=21.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEE
Q 033109 35 NAVVIFSISSCCMCHAVKRLFCGMGVNPTVY 65 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v 65 (127)
.-++.|+.+|||+|+.....|.++.-.+..+
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i 52 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQLAADYPVV 52 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHHHHhhCCEE
Confidence 3456688999999998887776543333333
No 208
>PLN02395 glutathione S-transferase
Probab=96.12 E-value=0.041 Score=39.31 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=51.1
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhH
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHI 111 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~ 111 (127)
+++|+.+.| .+.+++-+|...|++|+.+.++.... .....++.+.+-. ..+|++..+|..+-....|.++..
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKG-EHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccC-CcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHH
Confidence 688887765 47999999999999999998876421 0011134455554 479999999988877777777644
No 209
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.05 E-value=0.0055 Score=40.90 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=24.8
Q ss_pred CCChhHHHHHHHHHh----c--CCCcEEEEecCCCChHHHHHHHHH--HhCCCCCccEEEE
Q 033109 43 SSCCMCHAVKRLFCG----M--GVNPTVYELDEDPKGKDMEKALMR--LLGTSPAVPVVFI 95 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~----~--~i~~~~v~id~~~~~~~~~~~l~~--~~g~~~~vP~ifv 95 (127)
+|||+|.++..++++ . +..+.++.|...+.-..-....+. .... ..+|+++-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEE
Confidence 599999999877754 2 223444555432110000012333 3455 47999974
No 210
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.02 E-value=0.013 Score=39.69 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=24.0
Q ss_pred CHHHHHHHHhcCCc-E-EEEEeCCChhHHHHHHHH
Q 033109 23 DPLEHIERLASENA-V-VIFSISSCCMCHAVKRLF 55 (127)
Q Consensus 23 ~~~~~~~~~~~~~~-v-~if~~~~Cp~C~~~k~~L 55 (127)
+..+.+..+-+.++ | ++|++.|||+|++.++.+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 55666777776665 4 448889999999887754
No 211
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.01 E-value=0.03 Score=49.63 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=19.1
Q ss_pred cCCcE-EEEEeCCChhHHHHHHHHHhc
Q 033109 33 SENAV-VIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 33 ~~~~v-~if~~~~Cp~C~~~k~~L~~~ 58 (127)
+...| +-|+.+|||.|+.....|+++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHH
Confidence 43334 449999999999888877654
No 212
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.007 Score=40.38 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=19.1
Q ss_pred CCChhHHHHHHHHHh-c---C--CCcEEEEecCCC
Q 033109 43 SSCCMCHAVKRLFCG-M---G--VNPTVYELDEDP 71 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~-~---~--i~~~~v~id~~~ 71 (127)
||||+|.+|..++.+ + . +.+..+++...+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRP 77 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCC
Confidence 699999999888754 2 2 334555555433
No 213
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.90 E-value=0.057 Score=37.00 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=52.1
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCC---CCCccEEEECCEEEeecHHH
Q 033109 33 SENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGT---SPAVPVVFIGGKLVGSMDRV 106 (127)
Q Consensus 33 ~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~---~~~vP~ifv~g~~igG~~~~ 106 (127)
....+++|..|.|.=|+.--+.|+..|++...++.+... .+++.+|. ..+.=+..|+|.+|-|.-.+
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~-------alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa 93 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFL-------ALKRRLGIPYEMQSCHTAVINGYYVEGHVPA 93 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHH-------HHHHhcCCChhhccccEEEEcCEEEeccCCH
Confidence 456789999999999999999999988877766665432 46666665 23677899999999987643
No 214
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=95.86 E-value=0.063 Score=32.78 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=43.0
Q ss_pred eCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 42 ISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 42 ~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
.+..+.|.++.-+|+..|++|+.+++...+. .... ..+|.+.+||+.|+....+..+.
T Consensus 14 ~~~~~~~~kv~~~L~elglpye~~~~~~~~~----------~~P~-GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 14 LPDNASCLAVQTFLKMCNLPFNVRCRANAEF----------MSPS-GKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred cCCCCCHHHHHHHHHHcCCCcEEEecCCccc----------cCCC-CcccEEEECCEEEeCHHHHHHHH
Confidence 3578889999999999999999885422110 1111 25999999999999888877764
No 215
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=95.83 E-value=0.07 Score=38.27 Aligned_cols=71 Identities=8% Similarity=0.165 Sum_probs=47.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-----CCE--EEeecHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-----GGK--LVGSMDRVMAS 109 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-----~g~--~igG~~~~~~~ 109 (127)
+++|+.+ +|+|.+++-+|..+|++|+.++|+.... .....++.+.+.. ..+|++.. ||. .+--...|..+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKG-GQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCccc-ccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 4678776 6999999999999999999998876432 1111234555554 47999987 442 35555555554
Q ss_pred h
Q 033109 110 H 110 (127)
Q Consensus 110 ~ 110 (127)
.
T Consensus 79 L 79 (215)
T PRK13972 79 L 79 (215)
T ss_pred H
Confidence 3
No 216
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.047 Score=40.02 Aligned_cols=59 Identities=29% Similarity=0.403 Sum_probs=42.6
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCc--EEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEE
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGMGVNP--TVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLV 100 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~~i~~--~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~i 100 (127)
.-.|.||+..+|..|-...+.|++.|.-- ..++-...+.. ++ ..+.+ ++|.||+||+.+
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~-----~~--~~~V~-SvP~Vf~DGel~ 70 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFL-----AF--EKGVI-SVPSVFIDGELV 70 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHH-----Hh--hccee-ecceEEEcCeEE
Confidence 34688999999999999999999988753 33333322221 22 23655 899999999976
No 217
>PRK11752 putative S-transferase; Provisional
Probab=95.62 E-value=0.12 Score=38.60 Aligned_cols=77 Identities=6% Similarity=0.115 Sum_probs=52.8
Q ss_pred HhcCCcEEEEEeCCChhHHHHHHHHHhc------CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECC----EEE
Q 033109 31 LASENAVVIFSISSCCMCHAVKRLFCGM------GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGG----KLV 100 (127)
Q Consensus 31 ~~~~~~v~if~~~~Cp~C~~~k~~L~~~------~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g----~~i 100 (127)
....+++++|+.+ +|+|.+++-+|.++ |++|+.+.|+..... ....++.+..-. ..+|++..++ ..+
T Consensus 39 ~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~-~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L 115 (264)
T PRK11752 39 PVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGD-QFSSGFVEINPN-SKIPALLDRSGNPPIRV 115 (264)
T ss_pred CCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCcccc-ccCHHHHhhCCC-CCCCEEEeCCCCCCeEE
Confidence 5567789999864 99999999999986 888998888753211 111235555554 4799998752 456
Q ss_pred eecHHHHHhh
Q 033109 101 GSMDRVMASH 110 (127)
Q Consensus 101 gG~~~~~~~~ 110 (127)
-....|..+.
T Consensus 116 ~ES~AIl~YL 125 (264)
T PRK11752 116 FESGAILLYL 125 (264)
T ss_pred EcHHHHHHHH
Confidence 6666666654
No 218
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=95.54 E-value=0.24 Score=30.34 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=45.1
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCC----hHHHHHHHHH-HhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 39 IFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPK----GKDMEKALMR-LLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 39 if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~----~~~~~~~l~~-~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+|+-.--+.|.+++-+|...|++|+.+.++.... ..+......+ ..-. ..+|++..||..+.-...|..+.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHH
Confidence 4444445788899999999999999988875431 1121111100 0122 37999999998877666665553
No 219
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.045 Score=39.18 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=46.3
Q ss_pred EEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHc
Q 033109 40 FSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHIN 112 (127)
Q Consensus 40 f~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~ 112 (127)
|+.+.|.+ +++-.|.=.|++|+++.|+--.+..+.-.++++.... ..||++.|||..+-..-.++++.++
T Consensus 11 YWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 11 YWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEE 80 (217)
T ss_pred hhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHh
Confidence 66788876 4555555566777776665544333344457776665 4799999999888766666666443
No 220
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=95.49 E-value=0.17 Score=30.47 Aligned_cols=70 Identities=11% Similarity=0.185 Sum_probs=45.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC-CEEEeecHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG-GKLVGSMDRVMAS 109 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~-g~~igG~~~~~~~ 109 (127)
+.+|..++ .|..++-+|...|++|+.+.++....... .+++.+.......+|.+..+ |..+-....|..+
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~-~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~Y 73 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHK-SPEFLAINPMFGKVPALEDGDGFVLTESNAILRY 73 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGG-SHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEeccccccc-chhhhhcccccceeeEEEECCCCEEEcHHHHHHH
Confidence 45566666 88999999999999999998885332110 02344444320369999999 9888776666554
No 221
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.34 E-value=0.043 Score=41.43 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=49.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE--CCEEEeecHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM-----GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI--GGKLVGSMDRVMAS 109 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~-----~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv--~g~~igG~~~~~~~ 109 (127)
|+-|+.+.+|.|..+-..|..+ .++|..+.....+.. ..+.. ..+|+|+| +|..++.+-.+.+.
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~--------~~f~~-~~LPtllvYk~G~l~~~~V~l~~~ 220 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPAS--------ENFPD-KNLPTLLVYKNGDLIGNFVGLTDL 220 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTT--------TTS-T-TC-SEEEEEETTEEEEEECTGGGC
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcc--------cCCcc-cCCCEEEEEECCEEEEeEEehHHh
Confidence 3348899999999998888765 344444444433211 22344 47999865 89888766555443
Q ss_pred h----HcCCcHHHHHhcCcc
Q 033109 110 H----INGTLVPLLKEAGAL 125 (127)
Q Consensus 110 ~----~~g~L~~~l~~~g~~ 125 (127)
. ....|+.+|...|++
T Consensus 221 ~g~df~~~dlE~~L~~~G~l 240 (265)
T PF02114_consen 221 LGDDFFTEDLEAFLIEYGVL 240 (265)
T ss_dssp T-TT--HHHHHHHHHTTTSS
T ss_pred cCCCCCHHHHHHHHHHcCCC
Confidence 2 233799999999987
No 222
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.13 E-value=0.18 Score=33.12 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=16.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~ 58 (127)
|+.|+.+|||.|.+....|+++
T Consensus 27 vl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 27 LLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 5558899999999876666543
No 223
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=95.05 E-value=0.052 Score=44.69 Aligned_cols=22 Identities=18% Similarity=0.174 Sum_probs=17.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhc
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~ 58 (127)
|+.|+.+|||.|.+....|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 3449999999999988887654
No 224
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.91 E-value=0.21 Score=33.38 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=18.5
Q ss_pred hcCCc-EEEEEeC-CChhHHHHHHHHHhc
Q 033109 32 ASENA-VVIFSIS-SCCMCHAVKRLFCGM 58 (127)
Q Consensus 32 ~~~~~-v~if~~~-~Cp~C~~~k~~L~~~ 58 (127)
.+..+ |+.|+.+ |||.|......|+++
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l 54 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNEL 54 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhh
Confidence 33444 5668888 999999777665443
No 225
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.85 E-value=0.0042 Score=45.90 Aligned_cols=85 Identities=16% Similarity=0.270 Sum_probs=57.1
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhc-------CCCcEEEEecCCCChHHHHHHH
Q 033109 8 WSCSYMPSSRGALGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGM-------GVNPTVYELDEDPKGKDMEKAL 80 (127)
Q Consensus 8 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~-------~i~~~~v~id~~~~~~~~~~~l 80 (127)
|+.+.-|+.++...-...+....+++..=.++|+.+|||.|......|..+ +|...++|+..++- |
T Consensus 14 ~~a~~~~~r~s~~~~~~eenw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-------L 86 (248)
T KOG0913|consen 14 VGADVTPRRSSKLTRIDEENWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-------L 86 (248)
T ss_pred hcCCcCccccceeEEecccchhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-------c
Confidence 344444554444444455566677777778889999999999999998764 56678899988874 3
Q ss_pred HHHhCCCCCccEEE--ECCEEE
Q 033109 81 MRLLGTSPAVPVVF--IGGKLV 100 (127)
Q Consensus 81 ~~~~g~~~~vP~if--v~g~~i 100 (127)
.-+.-. ...|+|+ .+|.|-
T Consensus 87 sGRF~v-taLptIYHvkDGeFr 107 (248)
T KOG0913|consen 87 SGRFLV-TALPTIYHVKDGEFR 107 (248)
T ss_pred ceeeEE-EecceEEEeeccccc
Confidence 222222 4689996 677543
No 226
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.80 E-value=0.017 Score=44.52 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=38.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEE----EecCCCChHHHHHHHHHHhCCCCCccEE-EECCEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVY----ELDEDPKGKDMEKALMRLLGTSPAVPVV-FIGGKL 99 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v----~id~~~~~~~~~~~l~~~~g~~~~vP~i-fv~g~~ 99 (127)
++=|+.|||.+|++...++++.|.....+ .|...+.. ...+++...|. ...|+| |..|.+
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT--~f~aiAnefgi-qGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT--RFPAIANEFGI-QGYPTIKFFKGDH 111 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc--cchhhHhhhcc-CCCceEEEecCCe
Confidence 55699999999999999998876543221 22221111 11246677787 479998 555543
No 227
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.64 E-value=0.058 Score=35.78 Aligned_cols=34 Identities=9% Similarity=0.433 Sum_probs=28.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEec
Q 033109 35 NAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELD 68 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id 68 (127)
..+++|++|.|+-|+.+..+|+++.-+|....|+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 3578899999999999999999988888765544
No 228
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.60 E-value=0.13 Score=36.18 Aligned_cols=74 Identities=24% Similarity=0.469 Sum_probs=34.5
Q ss_pred HHHHHHhcCC-cEEE-EEeCCChhHHHHHH-HHHh------cCCCcEEEEecCCC--ChHHH-HHHHHHHhCCCCCccEE
Q 033109 26 EHIERLASEN-AVVI-FSISSCCMCHAVKR-LFCG------MGVNPTVYELDEDP--KGKDM-EKALMRLLGTSPAVPVV 93 (127)
Q Consensus 26 ~~~~~~~~~~-~v~i-f~~~~Cp~C~~~k~-~L~~------~~i~~~~v~id~~~--~~~~~-~~~l~~~~g~~~~vP~i 93 (127)
+.++++-+.+ +|.| ++.++|.+|+.+.. .|.+ ++-.|.-|.||..+ +-..+ .......+|. .++|..
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~-gGwPl~ 106 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGS-GGWPLT 106 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS----SSEE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCC-CCCCce
Confidence 3445554444 4444 67899999996653 4433 23346666666543 32222 2233344565 478875
Q ss_pred -EE--CCEEE
Q 033109 94 -FI--GGKLV 100 (127)
Q Consensus 94 -fv--~g~~i 100 (127)
|+ +|+.+
T Consensus 107 vfltPdg~p~ 116 (163)
T PF03190_consen 107 VFLTPDGKPF 116 (163)
T ss_dssp EEE-TTS-EE
T ss_pred EEECCCCCee
Confidence 44 56655
No 229
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.54 E-value=0.22 Score=35.83 Aligned_cols=20 Identities=25% Similarity=0.344 Sum_probs=16.3
Q ss_pred CCcEEEEEeCCChhHHHHHH
Q 033109 34 ENAVVIFSISSCCMCHAVKR 53 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~ 53 (127)
...|+.|..-.||+|.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 34588899999999998654
No 230
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.49 E-value=0.072 Score=42.08 Aligned_cols=51 Identities=12% Similarity=0.307 Sum_probs=30.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----CC---CcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM----GV---NPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~----~i---~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
++.|+.+||++|+.....+.+. +- .+....+|..... +.. .+. ..+|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~------~~~-~~i-~~~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND------VPP-FEV-EGFPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc------cCC-CCc-cccCEEEE
Confidence 5559999999999888887653 21 2333444433221 222 455 47999865
No 231
>PRK10542 glutathionine S-transferase; Provisional
Probab=94.48 E-value=0.17 Score=35.62 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=45.3
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-CCEEEeecHHHHHhh
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-GGKLVGSMDRVMASH 110 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-~g~~igG~~~~~~~~ 110 (127)
.+|+.+. +.+.++.-+|...|++|+.+.|+.........+.+.+..-. ..+|++.+ ||..|-....|.++.
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHH
Confidence 4566543 34667788899999999998887542110001134455554 47999987 667777766666654
No 232
>PTZ00057 glutathione s-transferase; Provisional
Probab=94.40 E-value=0.35 Score=34.46 Aligned_cols=72 Identities=11% Similarity=0.195 Sum_probs=50.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHH-HHHHH--HHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDM-EKALM--RLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~-~~~l~--~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
++++|+.+..+.|..++-+|...|++|+.+.++...+ ..+ .+.+. ..+.. ..+|++.+||..+.....|..+
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~-~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGD-AFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccch-HHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHHH
Confidence 4788988889999999999999999999987754221 110 11111 12333 4799999999888777766665
No 233
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=94.34 E-value=0.16 Score=34.57 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=15.0
Q ss_pred EEEEEeCCChhHHHHHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCG 57 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~ 57 (127)
|+.|+.+||| |......|.+
T Consensus 26 vl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHH
Confidence 4459999999 9876666654
No 234
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.18 E-value=0.074 Score=41.09 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=43.2
Q ss_pred HHHHHhcCCcEEE--EEeCCChhHHHHHHHHHhcCC-----------CcEEEEecCCCChHHHHHHHHHHhCCCCCccEE
Q 033109 27 HIERLASENAVVI--FSISSCCMCHAVKRLFCGMGV-----------NPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV 93 (127)
Q Consensus 27 ~~~~~~~~~~v~i--f~~~~Cp~C~~~k~~L~~~~i-----------~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i 93 (127)
.+..++..+.+++ |+.+|||+.+..+.+|.+... -+..||.+... .++..+.. .-.|++
T Consensus 5 N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~-------~ia~ky~I-~KyPTl 76 (375)
T KOG0912|consen 5 NIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKED-------DIADKYHI-NKYPTL 76 (375)
T ss_pred cHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhh-------HHhhhhcc-ccCcee
Confidence 3456666676554 999999999999999975421 13445555433 35566665 357875
Q ss_pred --EECCEEE
Q 033109 94 --FIGGKLV 100 (127)
Q Consensus 94 --fv~g~~i 100 (127)
|.+|...
T Consensus 77 KvfrnG~~~ 85 (375)
T KOG0912|consen 77 KVFRNGEMM 85 (375)
T ss_pred eeeeccchh
Confidence 8888543
No 235
>PLN02412 probable glutathione peroxidase
Probab=94.08 E-value=0.43 Score=33.19 Aligned_cols=56 Identities=5% Similarity=0.163 Sum_probs=29.7
Q ss_pred EEEEEeCCChhHHHHHHHHHhc----C-CCcEEEEecCC-------CChHHHHHHHHHHhCCCCCccEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGM----G-VNPTVYELDED-------PKGKDMEKALMRLLGTSPAVPVVF 94 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~----~-i~~~~v~id~~-------~~~~~~~~~l~~~~g~~~~vP~if 94 (127)
|+.|+.+|||.|.+....|.++ + -.+..+=|..+ ....++.+.+.+..|. ++|.+.
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~--~fpvl~ 100 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKA--EFPIFD 100 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCC--CCceEe
Confidence 4458899999999644444332 2 22444444322 2233444444444453 577764
No 236
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.99 E-value=0.12 Score=42.83 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=51.4
Q ss_pred HHHHHhcCCc---EEE-EEeCCChhHHHHHHHHH-h-------cCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE
Q 033109 27 HIERLASENA---VVI-FSISSCCMCHAVKRLFC-G-------MGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF 94 (127)
Q Consensus 27 ~~~~~~~~~~---v~i-f~~~~Cp~C~~~k~~L~-~-------~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if 94 (127)
+++++..+++ |++ |+.+||-.|+..++..- + .++.+-..|+. .+..+..+.|++ .|. -.+|.++
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT--~~~p~~~~lLk~-~~~-~G~P~~~ 539 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT--ANDPAITALLKR-LGV-FGVPTYL 539 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec--CCCHHHHHHHHH-cCC-CCCCEEE
Confidence 6777665554 666 99999999998877652 1 13333444554 444455556654 564 5799985
Q ss_pred E-C--CEEEeecHHHHHhhHcCCcHHHHHhc
Q 033109 95 I-G--GKLVGSMDRVMASHINGTLVPLLKEA 122 (127)
Q Consensus 95 v-~--g~~igG~~~~~~~~~~g~L~~~l~~~ 122 (127)
+ + |+..-. +-...+.+.+.+.|+++
T Consensus 540 ff~~~g~e~~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 540 FFGPQGSEPEI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred EECCCCCcCcC---CcceecHHHHHHHHHHh
Confidence 4 3 332211 22333445566666544
No 237
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=93.84 E-value=0.31 Score=34.89 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=27.5
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhc---CCCc------EEEEecCC
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGM---GVNP------TVYELDED 70 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~---~i~~------~~v~id~~ 70 (127)
...++-|+.+||+.|+.-..+|.++ |++. ..+++|..
T Consensus 60 KV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 60 KVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 3356669999999999888887654 6776 66776654
No 238
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.81 E-value=0.41 Score=31.22 Aligned_cols=72 Identities=25% Similarity=0.396 Sum_probs=44.9
Q ss_pred HHHHHHhc---CCcEEEEEeCC-ChhHHHHHHHHHhc------CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 26 EHIERLAS---ENAVVIFSISS-CCMCHAVKRLFCGM------GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 26 ~~~~~~~~---~~~v~if~~~~-Cp~C~~~k~~L~~~------~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
+.++++++ ..+++||=-++ ||=...+.+-|.+. .+++-+++|-.+.+ +-+++++.+|..-.-|++++
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~---vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRP---VSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHH---HHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCch---hHHHHHHHhCCCcCCCcEEE
Confidence 34555554 56788887665 99999998887653 27777778765543 55589999997667899865
Q ss_pred --CCEEE
Q 033109 96 --GGKLV 100 (127)
Q Consensus 96 --~g~~i 100 (127)
||+.+
T Consensus 85 i~~g~~v 91 (105)
T PF11009_consen 85 IKNGKVV 91 (105)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 88766
No 239
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.083 Score=43.18 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=26.7
Q ss_pred HHHHHHHhcCC--c-EEEEEeCCChhHHHHHHHHHhcCCCc
Q 033109 25 LEHIERLASEN--A-VVIFSISSCCMCHAVKRLFCGMGVNP 62 (127)
Q Consensus 25 ~~~~~~~~~~~--~-v~if~~~~Cp~C~~~k~~L~~~~i~~ 62 (127)
...+..++... . ++-|+.|||+||++...++++++-.|
T Consensus 373 gknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 373 GKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred ecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 34455555322 2 45599999999999999998875443
No 240
>PTZ00256 glutathione peroxidase; Provisional
Probab=93.56 E-value=0.28 Score=34.62 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=14.1
Q ss_pred EEEEeCCChhHHHHHHHHH
Q 033109 38 VIFSISSCCMCHAVKRLFC 56 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~ 56 (127)
++++.+|||.|.+-...|.
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 3568999999997555444
No 241
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=93.22 E-value=0.52 Score=31.14 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=15.8
Q ss_pred cEEEEEeCCChh-HHHHHHHHHh
Q 033109 36 AVVIFSISSCCM-CHAVKRLFCG 57 (127)
Q Consensus 36 ~v~if~~~~Cp~-C~~~k~~L~~ 57 (127)
-|++|+.+|||+ |.+....|++
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHHH
Confidence 456688999998 9866555543
No 242
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=93.15 E-value=0.49 Score=35.14 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=15.4
Q ss_pred cEEEEEeCCChhHHHHHHHHH
Q 033109 36 AVVIFSISSCCMCHAVKRLFC 56 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~ 56 (127)
-|+.|+.+|||.|......|.
T Consensus 102 vvl~FwAswCp~c~~e~p~L~ 122 (236)
T PLN02399 102 LLIVNVASKCGLTSSNYSELS 122 (236)
T ss_pred EEEEEEcCCCcchHHHHHHHH
Confidence 355699999999986554443
No 243
>PTZ00056 glutathione peroxidase; Provisional
Probab=93.08 E-value=0.65 Score=33.36 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=15.2
Q ss_pred EEEEEeCCChhHHHHHHHHHh
Q 033109 37 VVIFSISSCCMCHAVKRLFCG 57 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~ 57 (127)
++.|+.+|||.|.+-...|.+
T Consensus 43 lv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 445999999999865555543
No 244
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=93.07 E-value=0.47 Score=28.67 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=41.5
Q ss_pred CChhHHHHHHHHHhcCCC---cEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-CCEEEeecHHHHHhh
Q 033109 44 SCCMCHAVKRLFCGMGVN---PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-GGKLVGSMDRVMASH 110 (127)
Q Consensus 44 ~Cp~C~~~k~~L~~~~i~---~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-~g~~igG~~~~~~~~ 110 (127)
--|.|-++..+|+-.+.+ ++.+.... +. .+.. ..+|.+.. +|+.+.|+.+|+++.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~----------~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PW----------LSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CC----------cCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 478999999999999998 55554432 22 1121 25999999 999999999998863
No 245
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=92.91 E-value=0.43 Score=31.99 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCcEEEEecCCCChH----HHHHHHHHHhCCCCCccEEEECCEEE--eecHHHHH
Q 033109 50 AVKRLFCGMGVNPTVYELDEDPKGK----DMEKALMRLLGTSPAVPVVFIGGKLV--GSMDRVMA 108 (127)
Q Consensus 50 ~~k~~L~~~~i~~~~v~id~~~~~~----~~~~~l~~~~g~~~~vP~ifv~g~~i--gG~~~~~~ 108 (127)
....+|++.|+....+++..+|..- .+.+.|+ ..|. ..+|.++|||+.+ |.+-+..+
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~-~~G~-e~LPitlVdGeiv~~G~YPt~eE 93 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQ-TEGA-EALPITLVDGEIVKTGRYPTNEE 93 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHH-HH-G-GG-SEEEETTEEEEESS---HHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHH-HcCc-ccCCEEEECCEEEEecCCCCHHH
Confidence 5567788899999999999988743 3344443 3464 5799999999866 44444333
No 246
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=92.89 E-value=0.23 Score=36.98 Aligned_cols=62 Identities=19% Similarity=0.465 Sum_probs=40.9
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEE----Eec-----------CCCChHHHHHHHHHHhCC-CCCccEEEECCE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVY----ELD-----------EDPKGKDMEKALMRLLGT-SPAVPVVFIGGK 98 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v----~id-----------~~~~~~~~~~~l~~~~g~-~~~vP~ifv~g~ 98 (127)
|.+|++.+|..|-.+-+.|.++.-+-..+ .|| ...+..+.+....+.+|. ....|++||+|+
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 56799999999999999998875443221 222 233444555566665653 234699999995
No 247
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=92.84 E-value=0.66 Score=31.52 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=14.7
Q ss_pred EEEEEeCCChhHHHHHHHH
Q 033109 37 VVIFSISSCCMCHAVKRLF 55 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L 55 (127)
|++|+.+|||+|.....-|
T Consensus 26 vv~~~as~C~~c~~~~~~l 44 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRAL 44 (153)
T ss_pred EEEEeCCCCCchhhhHHHH
Confidence 5679999999998655544
No 248
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.81 Score=33.36 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=55.8
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 35 NAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
....+++-+....|+.++-+|.-.+++|+++.+...+. +. .++..+.. ..+|++-|||..|...-.|..+.
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~---~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WE---ELKDKMPF-GQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hh---hhcccCCC-CCCCEEeECCEeeccHHHHHHHH
Confidence 34567777888999999999999999999999987664 22 34444554 47999999999998887776663
No 249
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=0.67 Score=33.90 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=54.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
++++|+.+.-|.|+++.-.++..|++|+.+.|+... +.+...++...... .++|++.-+|-.+-....|..+.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~-ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl 74 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVK-GEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYL 74 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccc-cccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHH
Confidence 567999999999999999999999999998766532 12222345555565 47999999988777666666553
No 250
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=92.40 E-value=0.34 Score=32.16 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=18.5
Q ss_pred HHHhcCCc-EEEEE-eCCChhHHHHHHHHHhc
Q 033109 29 ERLASENA-VVIFS-ISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 29 ~~~~~~~~-v~if~-~~~Cp~C~~~k~~L~~~ 58 (127)
.+.....+ |++|. .+|||.|......|.++
T Consensus 18 ~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~ 49 (149)
T cd02970 18 SALLGEGPVVVVFYRGFGCPFCREYLRALSKL 49 (149)
T ss_pred HHHhcCCCEEEEEECCCCChhHHHHHHHHHHH
Confidence 34444344 44554 78999999766666543
No 251
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.17 Score=39.78 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=36.6
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcC----CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGMG----VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~~----i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
..-++.|..+||.+|.+....+.+.. -......||.... +.+.+.++. ..+|++.+
T Consensus 48 ~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~-----~~~~~~y~i-~gfPtl~~ 107 (383)
T KOG0191|consen 48 SPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH-----KDLCEKYGI-QGFPTLKV 107 (383)
T ss_pred CceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh-----HHHHHhcCC-ccCcEEEE
Confidence 44578899999999998877776542 2223334443222 246777887 48999854
No 252
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.77 E-value=0.16 Score=34.91 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=19.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCG 57 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~ 57 (127)
...|+.|+...||+|......+.+
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 456888999999999988777643
No 253
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=91.75 E-value=0.37 Score=34.62 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=23.7
Q ss_pred HHHHhcCCcEEE--EEeCCChhHHHHHHHH-------HhcCCCcEEEEecC
Q 033109 28 IERLASENAVVI--FSISSCCMCHAVKRLF-------CGMGVNPTVYELDE 69 (127)
Q Consensus 28 ~~~~~~~~~v~i--f~~~~Cp~C~~~k~~L-------~~~~i~~~~v~id~ 69 (127)
+.+......+++ |..++||.|.....-| ++.|+.+--+.+|.
T Consensus 19 l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 19 FHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred HHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 444433244544 6678999998654444 34455555555554
No 254
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=91.66 E-value=0.14 Score=31.28 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=18.5
Q ss_pred CCcEEE-EEeCCChhHHHHHHHHHhc
Q 033109 34 ENAVVI-FSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 34 ~~~v~i-f~~~~Cp~C~~~k~~L~~~ 58 (127)
...+++ |+.+|||+|......|.+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHH
Confidence 334444 4699999999998888654
No 255
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=0.89 Score=36.25 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHH---HhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC
Q 033109 20 LGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLF---CGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG 96 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L---~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~ 96 (127)
...+..+.++.+-....+.-|.+-.|..|..+.+.| .-++-+.+-+-||-. -++++... -+. ..||+||+|
T Consensus 103 ~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa----~Fq~Evea-r~I-MaVPtvfln 176 (520)
T COG3634 103 EDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGA----LFQDEVEA-RNI-MAVPTVFLN 176 (520)
T ss_pred hhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecch----hhHhHHHh-ccc-eecceEEEc
Confidence 455566666666566677777776666666555555 445555555555532 23334432 354 579999999
Q ss_pred CEEEeec
Q 033109 97 GKLVGSM 103 (127)
Q Consensus 97 g~~igG~ 103 (127)
|+.+|..
T Consensus 177 Ge~fg~G 183 (520)
T COG3634 177 GEEFGQG 183 (520)
T ss_pred chhhccc
Confidence 9988743
No 256
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=91.21 E-value=0.63 Score=32.95 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=14.2
Q ss_pred CCcEEE-EE-eCCChhHHHHHHHH
Q 033109 34 ENAVVI-FS-ISSCCMCHAVKRLF 55 (127)
Q Consensus 34 ~~~v~i-f~-~~~Cp~C~~~k~~L 55 (127)
...++| |+ ..|||.|..-...|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l 54 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDL 54 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHH
Confidence 334544 55 78999998754444
No 257
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=91.15 E-value=0.58 Score=30.13 Aligned_cols=69 Identities=14% Similarity=0.261 Sum_probs=43.5
Q ss_pred EEEeCCChhHHHHHHHHHhcCC--CcEEEEecCCCChHHHHHHHHHHhCC----CCCccEEEECCE-EEeecHHHHHhhH
Q 033109 39 IFSISSCCMCHAVKRLFCGMGV--NPTVYELDEDPKGKDMEKALMRLLGT----SPAVPVVFIGGK-LVGSMDRVMASHI 111 (127)
Q Consensus 39 if~~~~Cp~C~~~k~~L~~~~i--~~~~v~id~~~~~~~~~~~l~~~~g~----~~~vP~ifv~g~-~igG~~~~~~~~~ 111 (127)
||+...||.|.....++.+... .++.+++...++.. +.+..|. -.+.-.+.-+|+ ...|.+-+..+..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQA-----LLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhh-----HHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHH
Confidence 4678899999999999998864 47777874433221 1111121 012333433776 8899998877755
Q ss_pred c
Q 033109 112 N 112 (127)
Q Consensus 112 ~ 112 (127)
.
T Consensus 76 ~ 76 (114)
T PF04134_consen 76 R 76 (114)
T ss_pred H
Confidence 4
No 258
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=90.99 E-value=2 Score=29.60 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=18.5
Q ss_pred HHHHhcCC-cEEEEEeCCChhHHHHHHHHHh
Q 033109 28 IERLASEN-AVVIFSISSCCMCHAVKRLFCG 57 (127)
Q Consensus 28 ~~~~~~~~-~v~if~~~~Cp~C~~~k~~L~~ 57 (127)
+....... -|+.|+.++||.|.....-|.+
T Consensus 19 l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~ 49 (171)
T cd02969 19 LADFADGKALVVMFICNHCPYVKAIEDRLNR 49 (171)
T ss_pred HHHHhCCCEEEEEEECCCCccHHHHHHHHHH
Confidence 34442333 3556889999999865555543
No 259
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=90.71 E-value=0.22 Score=32.04 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=31.2
Q ss_pred HHHhcCCcEEEEEeC-CChhHHHHHHHHHhc----CC-CcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 29 ERLASENAVVIFSIS-SCCMCHAVKRLFCGM----GV-NPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 29 ~~~~~~~~v~if~~~-~Cp~C~~~k~~L~~~----~i-~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
.++....-|+.|+.. |||.|.....-|.++ .. .+..+-|..++.. +. +.+.+..+ ..+|.+.-
T Consensus 21 ~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~-~~-~~~~~~~~--~~~~~~~D 89 (124)
T PF00578_consen 21 SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE-EI-KQFLEEYG--LPFPVLSD 89 (124)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH-HH-HHHHHHHT--CSSEEEEE
T ss_pred HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc-ch-hhhhhhhc--cccccccC
Confidence 444222334556776 999998665555432 22 2455555543322 22 23434444 24666543
No 260
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.65 E-value=0.26 Score=33.29 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=21.7
Q ss_pred cEEEEEeCCChhHHHHHHHH----Hhc----CCCcEEEEe
Q 033109 36 AVVIFSISSCCMCHAVKRLF----CGM----GVNPTVYEL 67 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L----~~~----~i~~~~v~i 67 (127)
.|++|....||+|.+....+ +++ .+.+..+.+
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred EEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 47889999999999775554 444 345666655
No 261
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.33 E-value=0.44 Score=32.11 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=19.4
Q ss_pred HHhCCCCCccEEEECCEEEeecHHHHH
Q 033109 82 RLLGTSPAVPVVFIGGKLVGSMDRVMA 108 (127)
Q Consensus 82 ~~~g~~~~vP~ifv~g~~igG~~~~~~ 108 (127)
...|. .++|++||||+.+.|..++.+
T Consensus 130 ~~~~i-~~tPt~~inG~~~~~~~~~~~ 155 (162)
T PF13462_consen 130 RQLGI-TGTPTFFINGKYVVGPYTIEE 155 (162)
T ss_dssp HHHT--SSSSEEEETTCEEETTTSHHH
T ss_pred HHcCC-ccccEEEECCEEeCCCCCHHH
Confidence 45676 589999999999987665544
No 262
>PRK13599 putative peroxiredoxin; Provisional
Probab=90.29 E-value=0.61 Score=34.01 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=18.1
Q ss_pred EEEeCCChhHHHHHHHHH-------hcCCCcEEEEecC
Q 033109 39 IFSISSCCMCHAVKRLFC-------GMGVNPTVYELDE 69 (127)
Q Consensus 39 if~~~~Cp~C~~~k~~L~-------~~~i~~~~v~id~ 69 (127)
.|...+||.|..-...|. +.|+..--+.+|.
T Consensus 35 ~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 35 SHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 356789999986444443 3455444444444
No 263
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=90.29 E-value=0.87 Score=33.67 Aligned_cols=95 Identities=19% Similarity=0.359 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCcEEE-EEeCCChhHHHHHHHHHhcCCCcEE---EEecCCCChHHHHHHHHHHhCCCCCccEEE--ECC
Q 033109 24 PLEHIERLASENAVVI-FSISSCCMCHAVKRLFCGMGVNPTV---YELDEDPKGKDMEKALMRLLGTSPAVPVVF--IGG 97 (127)
Q Consensus 24 ~~~~~~~~~~~~~v~i-f~~~~Cp~C~~~k~~L~~~~i~~~~---v~id~~~~~~~~~~~l~~~~g~~~~vP~if--v~g 97 (127)
..+.+.+-++..-|+| .+-++-+-|..+-..+.=+...|-. +.|...--+ ....... ..+|++. -||
T Consensus 149 fld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~g------as~~F~~-n~lP~LliYkgG 221 (273)
T KOG3171|consen 149 FLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTG------ASDRFSL-NVLPTLLIYKGG 221 (273)
T ss_pred HHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecccc------chhhhcc-cCCceEEEeeCC
Confidence 3344444444444433 5678888898888888776665533 334433221 1122232 3688875 599
Q ss_pred EEEeecHHHHHh----hHcCCcHHHHHhcCcc
Q 033109 98 KLVGSMDRVMAS----HINGTLVPLLKEAGAL 125 (127)
Q Consensus 98 ~~igG~~~~~~~----~~~g~L~~~l~~~g~~ 125 (127)
+.||.|-.+-+. +-.|+|.+.|++.|++
T Consensus 222 eLIgNFv~va~qlgedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 222 ELIGNFVSVAEQLGEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred chhHHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence 999998766544 4578999999998876
No 264
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.19 E-value=1 Score=37.24 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=40.9
Q ss_pred CCHHHHHHHHhc--CCc--EEEEEeCCChhHHHHHHHHHhcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCCCccE
Q 033109 22 GDPLEHIERLAS--ENA--VVIFSISSCCMCHAVKRLFCGMG-----VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPV 92 (127)
Q Consensus 22 ~~~~~~~~~~~~--~~~--v~if~~~~Cp~C~~~k~~L~~~~-----i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ 92 (127)
++..+.+++.+. .++ +.+|+.+.|++|..++.+|++.. +.++++|...+. .+.+.+|. .-+|.
T Consensus 351 ~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~-------~~~~~~~v-~~~P~ 422 (555)
T TIGR03143 351 DSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEP-------ESETLPKI-TKLPT 422 (555)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccch-------hhHhhcCC-CcCCE
Confidence 334444555443 224 56688889999999999998752 344444544332 24455676 35898
Q ss_pred EEE
Q 033109 93 VFI 95 (127)
Q Consensus 93 ifv 95 (127)
+-+
T Consensus 423 ~~i 425 (555)
T TIGR03143 423 VAL 425 (555)
T ss_pred EEE
Confidence 866
No 265
>PRK13190 putative peroxiredoxin; Provisional
Probab=89.18 E-value=0.89 Score=32.68 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=14.5
Q ss_pred CcEEE--EEeCCChhHHHHHHHHH
Q 033109 35 NAVVI--FSISSCCMCHAVKRLFC 56 (127)
Q Consensus 35 ~~v~i--f~~~~Cp~C~~~k~~L~ 56 (127)
..+++ |..++||.|..-...|.
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~ 51 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFS 51 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHH
Confidence 34544 67889999986554443
No 266
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=89.10 E-value=5.3 Score=27.30 Aligned_cols=72 Identities=21% Similarity=0.403 Sum_probs=44.4
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcC--CCcEEEEecCCCChHHHHHHHHHHhCCCCCc--cEEEE-CCEEEeecHHHH
Q 033109 33 SENAVVIFSISSCCMCHAVKRLFCGMG--VNPTVYELDEDPKGKDMEKALMRLLGTSPAV--PVVFI-GGKLVGSMDRVM 107 (127)
Q Consensus 33 ~~~~v~if~~~~Cp~C~~~k~~L~~~~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~v--P~ifv-~g~~igG~~~~~ 107 (127)
+....+|++.-.||.|....++|.+.. -.+...++...+ +. ++...+|....- -.+|+ +|+..-|.+.+.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~-g~----~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~ 80 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEP-GQ----ALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAI 80 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCch-hh----hHHhhcCCChhhhheeeEecCCceEeccHHHH
Confidence 445577888999999999999997764 345555554332 22 344555642222 23444 567777777665
Q ss_pred Hh
Q 033109 108 AS 109 (127)
Q Consensus 108 ~~ 109 (127)
+.
T Consensus 81 ~i 82 (137)
T COG3011 81 RI 82 (137)
T ss_pred HH
Confidence 54
No 267
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=88.76 E-value=3 Score=29.16 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=51.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhC--C-------------------CCCccEE--
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLG--T-------------------SPAVPVV-- 93 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g--~-------------------~~~vP~i-- 93 (127)
|+|=+++.-+.-+.+-.+|+++|++|+..-+.-+.....+.+..++.-. . .+++|+|
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGV 86 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGV 86 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEec
Confidence 3344456778889999999999999999999887766655544433221 1 2567777
Q ss_pred EECCEEEeecHHHHHh
Q 033109 94 FIGGKLVGSMDRVMAS 109 (127)
Q Consensus 94 fv~g~~igG~~~~~~~ 109 (127)
-|..+.++|.|.+...
T Consensus 87 Pv~s~~L~GlDSL~Si 102 (162)
T COG0041 87 PVQSKALSGLDSLLSI 102 (162)
T ss_pred cCccccccchHHHHHH
Confidence 3567788888876554
No 268
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=88.64 E-value=1.7 Score=28.49 Aligned_cols=19 Identities=21% Similarity=0.189 Sum_probs=12.3
Q ss_pred EEEEE-eCCChhHHHHHHHH
Q 033109 37 VVIFS-ISSCCMCHAVKRLF 55 (127)
Q Consensus 37 v~if~-~~~Cp~C~~~k~~L 55 (127)
++.|+ ..|||.|.....-|
T Consensus 27 ll~f~~~~~cp~C~~~~~~l 46 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDF 46 (140)
T ss_pred EEEEeCCCCCCchHHHHHHH
Confidence 44455 57899998654444
No 269
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=88.57 E-value=1.1 Score=32.48 Aligned_cols=60 Identities=8% Similarity=0.192 Sum_probs=41.2
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECC
Q 033109 33 SENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGG 97 (127)
Q Consensus 33 ~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g 97 (127)
....+.+|.+..||.|......+..-+-++.++-|++..+... +..+... ..+|.--|..
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~----Ir~WA~~-~~Idp~~V~~ 167 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDER----IRQWANR-HQIDPAKVRS 167 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHH----HHHHHHH-cCCCHHHeec
Confidence 4567999999999999988888877778888888885544443 4444443 2455444443
No 270
>PRK13189 peroxiredoxin; Provisional
Probab=88.21 E-value=1.2 Score=32.65 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=20.7
Q ss_pred cCCcEEE--EEeCCChhHHHHHHHH-------HhcCCCcEEEEecC
Q 033109 33 SENAVVI--FSISSCCMCHAVKRLF-------CGMGVNPTVYELDE 69 (127)
Q Consensus 33 ~~~~v~i--f~~~~Cp~C~~~k~~L-------~~~~i~~~~v~id~ 69 (127)
....+++ |..++||.|..-...| ++.|+...-+.+|.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3444544 5678999998644333 33455544444443
No 271
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=1.5 Score=34.55 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=35.6
Q ss_pred hcCCcEEEEEeCCChhHHHHHHHHHhcC------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 32 ASENAVVIFSISSCCMCHAVKRLFCGMG------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 32 ~~~~~v~if~~~~Cp~C~~~k~~L~~~~------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
.+...++.|..|||++|+.....+.+.. ....+..+|-. ....+....+. ..+|++.+
T Consensus 161 ~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~-----~~~~~~~~~~v-~~~Pt~~~ 224 (383)
T KOG0191|consen 161 SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT-----VHKSLASRLEV-RGYPTLKL 224 (383)
T ss_pred cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc-----hHHHHhhhhcc-cCCceEEE
Confidence 3445688899999999998866665442 33444444433 11235555665 36888744
No 272
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.57 E-value=1.8 Score=35.23 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=50.2
Q ss_pred eCCChhHHHHHHHHHhc--CCC-cEEEEecCCCChHH-HHHHHHHHhC-CCCCccEEE---E----CCEEEeecHHHHHh
Q 033109 42 ISSCCMCHAVKRLFCGM--GVN-PTVYELDEDPKGKD-MEKALMRLLG-TSPAVPVVF---I----GGKLVGSMDRVMAS 109 (127)
Q Consensus 42 ~~~Cp~C~~~k~~L~~~--~i~-~~~v~id~~~~~~~-~~~~l~~~~g-~~~~vP~if---v----~g~~igG~~~~~~~ 109 (127)
+..|||=.++.-+-+.+ +.+ |++..|-.+|+.++ +.+.+.+..| ....-|.|. + .|..+||+.|+.++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 36899999998887765 444 88889998887543 4445555455 124569985 4 56899999999987
Q ss_pred hH
Q 033109 110 HI 111 (127)
Q Consensus 110 ~~ 111 (127)
..
T Consensus 81 ~~ 82 (452)
T cd05295 81 AE 82 (452)
T ss_pred HH
Confidence 43
No 273
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=87.02 E-value=1.9 Score=29.90 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=15.6
Q ss_pred CCcEEE-EE-eCCChhHHHHHHHHHh
Q 033109 34 ENAVVI-FS-ISSCCMCHAVKRLFCG 57 (127)
Q Consensus 34 ~~~v~i-f~-~~~Cp~C~~~k~~L~~ 57 (127)
...++| |+ .+|||.|......|.+
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHH
Confidence 334444 55 6899999976665543
No 274
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=86.79 E-value=1.5 Score=29.22 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=17.2
Q ss_pred HHHhcCCc-EEEEE-eCCChhHHHHHHHHHh
Q 033109 29 ERLASENA-VVIFS-ISSCCMCHAVKRLFCG 57 (127)
Q Consensus 29 ~~~~~~~~-v~if~-~~~Cp~C~~~k~~L~~ 57 (127)
.+.-.... |++|+ .+|||.|.+....|.+
T Consensus 23 ~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 23 SEFRGRKPVVLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred HHHcCCCeEEEEEeCCCCCccHHHHHHHHHH
Confidence 44433244 44455 7899999866555543
No 275
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=86.77 E-value=0.27 Score=40.87 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=44.0
Q ss_pred HHHHHHHhcC---CcEEEEEeCCChhHHHHHHHHHhcCCC----cEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 25 LEHIERLASE---NAVVIFSISSCCMCHAVKRLFCGMGVN----PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 25 ~~~~~~~~~~---~~v~if~~~~Cp~C~~~k~~L~~~~i~----~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
.+.++..+-. ..++=|..+||++|++....++++... ...+-|.....+.+.-..+.+..+. +.+|+++-
T Consensus 46 ~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V-~~~Ptlry 122 (606)
T KOG1731|consen 46 VDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV-SGYPTLRY 122 (606)
T ss_pred hhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC-CCCceeee
Confidence 3445665543 346668899999999998888876432 2333333322222333367888887 58999953
No 276
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=86.65 E-value=3.6 Score=28.73 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=50.1
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhC---------------------CCCCccEEE--
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLG---------------------TSPAVPVVF-- 94 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g---------------------~~~~vP~if-- 94 (127)
++=+++.=|+++++...|+++|++|+..-+.-+.....+.+.+++... ..+++|+|=
T Consensus 4 imGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP 83 (156)
T TIGR01162 4 IMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVP 83 (156)
T ss_pred EECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEec
Confidence 334457789999999999999999988888877776666555543221 025677763
Q ss_pred ECCEEEeecHHHHHhhH
Q 033109 95 IGGKLVGSMDRVMASHI 111 (127)
Q Consensus 95 v~g~~igG~~~~~~~~~ 111 (127)
+.....+|.|.+.....
T Consensus 84 ~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 84 VPSKALSGLDSLLSIVQ 100 (156)
T ss_pred CCccCCCCHHHHHHHhc
Confidence 34445677776665544
No 277
>PRK13191 putative peroxiredoxin; Provisional
Probab=86.59 E-value=1.6 Score=31.80 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=22.2
Q ss_pred cCCcEEE--EEeCCChhHHHHHHHHH-------hcCCCcEEEEecCC
Q 033109 33 SENAVVI--FSISSCCMCHAVKRLFC-------GMGVNPTVYELDED 70 (127)
Q Consensus 33 ~~~~v~i--f~~~~Cp~C~~~k~~L~-------~~~i~~~~v~id~~ 70 (127)
....+++ |..++||.|..-...|. +.|+..--+.+|..
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 3334444 56789999987555553 34555444555543
No 278
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=86.56 E-value=2.2 Score=30.98 Aligned_cols=94 Identities=20% Similarity=0.281 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCcEEE-EEeCCChhHH---HHHHHHHhcCCC--cEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EE
Q 033109 24 PLEHIERLASENAVVI-FSISSCCMCH---AVKRLFCGMGVN--PTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FI 95 (127)
Q Consensus 24 ~~~~~~~~~~~~~v~i-f~~~~Cp~C~---~~k~~L~~~~i~--~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv 95 (127)
-.+.+...-++.+|++ |+.+.---|+ +-..+|.+..+. |..++....| -|....+++ .+|.| |.
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~P-------Flv~kL~Ik-VLP~v~l~k 145 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAP-------FLVTKLNIK-VLPTVALFK 145 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCc-------eeeeeeeee-EeeeEEEEE
Confidence 3455666666777766 9998856665 445555555444 5555555555 255667874 79997 67
Q ss_pred CCE---EEeecHHHHHh--hHcCCcHHHHHhcCcc
Q 033109 96 GGK---LVGSMDRVMAS--HINGTLVPLLKEAGAL 125 (127)
Q Consensus 96 ~g~---~igG~~~~~~~--~~~g~L~~~l~~~g~~ 125 (127)
+|. +|-||+++=.- +.-..|+..|..+|++
T Consensus 146 ~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 146 NGKTVDYVVGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred cCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 885 66787765221 1222467777777654
No 279
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=86.15 E-value=2.4 Score=28.80 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=39.1
Q ss_pred HHHHhcCCc-EEEEEeC---CChhHHHHHHHH----HhcC---CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE--E
Q 033109 28 IERLASENA-VVIFSIS---SCCMCHAVKRLF----CGMG---VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--F 94 (127)
Q Consensus 28 ~~~~~~~~~-v~if~~~---~Cp~C~~~k~~L----~~~~---i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--f 94 (127)
+...+...+ .++|... .+|-+..+--+| ++++ +.+-.+|+|.++ ++...+|. .++|++ |
T Consensus 27 ~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~-------~LA~~fgV-~siPTLl~F 98 (132)
T PRK11509 27 LDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-------AIGDRFGV-FRFPATLVF 98 (132)
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH-------HHHHHcCC-ccCCEEEEE
Confidence 344444443 3444432 366665544444 3443 345556666554 47888998 589998 4
Q ss_pred ECCEEEeec
Q 033109 95 IGGKLVGSM 103 (127)
Q Consensus 95 v~g~~igG~ 103 (127)
-||+.+|-.
T Consensus 99 kdGk~v~~i 107 (132)
T PRK11509 99 TGGNYRGVL 107 (132)
T ss_pred ECCEEEEEE
Confidence 599887644
No 280
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=85.44 E-value=1.6 Score=28.95 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=17.7
Q ss_pred HHHHhcCCcEEEEEeCC-ChhHHHHHHHHHh
Q 033109 28 IERLASENAVVIFSISS-CCMCHAVKRLFCG 57 (127)
Q Consensus 28 ~~~~~~~~~v~if~~~~-Cp~C~~~k~~L~~ 57 (127)
+.+.....-|+.|+.+| ||.|.+....|.+
T Consensus 21 l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~ 51 (143)
T cd03014 21 LADFAGKVKVISVFPSIDTPVCATQTKRFNK 51 (143)
T ss_pred HHHhCCCeEEEEEEcCCCCCcCHHHHHHHHH
Confidence 33433333344466666 7999977666643
No 281
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=84.00 E-value=6.8 Score=27.86 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=34.9
Q ss_pred HHHHhcCCcEEEEEeCCChhHHHHH---HHHHhcCC-CcEEEEecCC-------CChHHHHHHHHHHhCCCCCccEE---
Q 033109 28 IERLASENAVVIFSISSCCMCHAVK---RLFCGMGV-NPTVYELDED-------PKGKDMEKALMRLLGTSPAVPVV--- 93 (127)
Q Consensus 28 ~~~~~~~~~v~if~~~~Cp~C~~~k---~~L~~~~i-~~~~v~id~~-------~~~~~~~~~l~~~~g~~~~vP~i--- 93 (127)
+.+.-...-+++|+.+||++|.... .+.++++- .+.++-+..+ ....++.+.++...|. ++|.+
T Consensus 20 Ls~~~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~--~Fpv~~k~ 97 (183)
T PRK10606 20 LEKYAGNVLLIVNVASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV--TFPMFSKI 97 (183)
T ss_pred HHHhCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC--CceeEEEE
Confidence 3444333345669999999997432 22233332 2444444321 2233444333334563 68866
Q ss_pred EECCE
Q 033109 94 FIGGK 98 (127)
Q Consensus 94 fv~g~ 98 (127)
-|+|.
T Consensus 98 dvnG~ 102 (183)
T PRK10606 98 EVNGE 102 (183)
T ss_pred ccCCC
Confidence 26665
No 282
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=83.61 E-value=2.5 Score=30.12 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=13.6
Q ss_pred CcEEE-EE-eCCChhHHHHHHHH
Q 033109 35 NAVVI-FS-ISSCCMCHAVKRLF 55 (127)
Q Consensus 35 ~~v~i-f~-~~~Cp~C~~~k~~L 55 (127)
..+++ |+ ..+||.|..-...|
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l 54 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDV 54 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHH
Confidence 34544 45 68999998744444
No 283
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=82.78 E-value=1.5 Score=28.79 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=13.9
Q ss_pred EEEEE-eCCChhHHHHHHHHHh
Q 033109 37 VVIFS-ISSCCMCHAVKRLFCG 57 (127)
Q Consensus 37 v~if~-~~~Cp~C~~~k~~L~~ 57 (127)
+++|+ ..|||.|.....-|.+
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHHH
Confidence 44455 5799999876555543
No 284
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=81.58 E-value=4.7 Score=27.08 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=12.1
Q ss_pred cCCcEEE-EEe-CCChhHHHHHH
Q 033109 33 SENAVVI-FSI-SSCCMCHAVKR 53 (127)
Q Consensus 33 ~~~~v~i-f~~-~~Cp~C~~~k~ 53 (127)
+...++| |+. .+||.|.....
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~ 51 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQAC 51 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHH
Confidence 3444444 553 47999975433
No 285
>PRK15000 peroxidase; Provisional
Probab=81.55 E-value=6.4 Score=28.23 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=16.8
Q ss_pred HHHhcCCcEEEEEeC--CChhHHHHHHHHH
Q 033109 29 ERLASENAVVIFSIS--SCCMCHAVKRLFC 56 (127)
Q Consensus 29 ~~~~~~~~v~if~~~--~Cp~C~~~k~~L~ 56 (127)
.+..+...+++|.-+ +||.|..-..-|.
T Consensus 29 ~~~~~gk~vvL~F~p~~~t~vC~~El~~l~ 58 (200)
T PRK15000 29 KQHTNGKTTVLFFWPMDFTFVCPSELIAFD 58 (200)
T ss_pred HHHhCCCEEEEEEECCCCCCCCHHHHHHHH
Confidence 333345556665544 7999987555554
No 286
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=80.30 E-value=1.9 Score=29.94 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=23.6
Q ss_pred cEEEEEeCCChhHHHHHHHH----Hhc-CCCcEEEEec
Q 033109 36 AVVIFSISSCCMCHAVKRLF----CGM-GVNPTVYELD 68 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L----~~~-~i~~~~v~id 68 (127)
+|++|+...||+|-.+...| +++ +++++.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 47899999999998666555 445 6666665554
No 287
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=78.86 E-value=24 Score=26.12 Aligned_cols=98 Identities=13% Similarity=0.266 Sum_probs=59.7
Q ss_pred CCCCCCHHHHHHHHhcCC--cEEEEE-----eCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCc
Q 033109 18 GALGGDPLEHIERLASEN--AVVIFS-----ISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAV 90 (127)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~--~v~if~-----~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~v 90 (127)
..........+...++.. +|.+.= ..+-+|-.++++.|.++|.....+++...+. +. +.+.... .
T Consensus 14 ~~~~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~-~~----Ie~~l~~---~ 85 (224)
T COG3340 14 EDVLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPL-AA----IENKLMK---A 85 (224)
T ss_pred chhhhhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCH-HH----HHHhhhh---c
Confidence 334455556666666553 444321 2468899999999999999999888887653 23 3333331 3
Q ss_pred cEEEECCEEEeecHHHHHhhHcCCcHHHHHhc---Cccc
Q 033109 91 PVVFIGGKLVGSMDRVMASHINGTLVPLLKEA---GALW 126 (127)
Q Consensus 91 P~ifv~g~~igG~~~~~~~~~~g~L~~~l~~~---g~~~ 126 (127)
=.|+|+| |-.-.+...-++-.|.++|++. |.+|
T Consensus 86 d~IyVgG---GNTF~LL~~lke~gld~iIr~~vk~G~~Y 121 (224)
T COG3340 86 DIIYVGG---GNTFNLLQELKETGLDDIIRERVKAGTPY 121 (224)
T ss_pred cEEEECC---chHHHHHHHHHHhCcHHHHHHHHHcCCce
Confidence 3565554 2222455555666677777654 6655
No 288
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.24 E-value=8.9 Score=27.87 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=18.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHh
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCG 57 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~ 57 (127)
...+++|....||||++...-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 456788999999999766666654
No 289
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=77.93 E-value=4.5 Score=27.46 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=42.7
Q ss_pred HHHHHHHHhcC--CcEE-E-EEeCCChhHHHHHHHHHhcC--C-Cc---EEEEecCCCChHHHHHHHHHHhCCCCCccEE
Q 033109 24 PLEHIERLASE--NAVV-I-FSISSCCMCHAVKRLFCGMG--V-NP---TVYELDEDPKGKDMEKALMRLLGTSPAVPVV 93 (127)
Q Consensus 24 ~~~~~~~~~~~--~~v~-i-f~~~~Cp~C~~~k~~L~~~~--i-~~---~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i 93 (127)
...++.+++.. .+++ + |+..|-|-|-+.-.+|.+.. + +| -.+|||+.++ +-+.++. ...|++
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~-------~~~~~~l-~~p~tv 81 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD-------FVKMYEL-YDPPTV 81 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh-------hhhhhcc-cCCceE
Confidence 34556666643 2433 3 99999999999999997642 2 23 3456664443 3345565 356655
Q ss_pred --EECCEEE
Q 033109 94 --FIGGKLV 100 (127)
Q Consensus 94 --fv~g~~i 100 (127)
|.+++++
T Consensus 82 mfFfn~kHm 90 (142)
T KOG3414|consen 82 MFFFNNKHM 90 (142)
T ss_pred EEEEcCceE
Confidence 6777765
No 290
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=77.42 E-value=15 Score=25.38 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=36.9
Q ss_pred HHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccE-EEEC--CEEE
Q 033109 28 IERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPV-VFIG--GKLV 100 (127)
Q Consensus 28 ~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~-ifv~--g~~i 100 (127)
++++.+. .+.+++-+....=...++++++++++|..+..|.... +.+.++. ..+|+ ++|+ |+.+
T Consensus 85 l~~l~~~-~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~-------~~~~~~v-~~~P~~~~id~~G~i~ 151 (173)
T TIGR00385 85 LNELAKD-GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGK-------LGLDLGV-YGAPETFLVDGNGVIL 151 (173)
T ss_pred HHHHHHc-CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCc-------hHHhcCC-eeCCeEEEEcCCceEE
Confidence 4444443 3444443333333556788999999887666665432 4445675 47994 5664 6533
No 291
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=75.80 E-value=1.5 Score=33.43 Aligned_cols=74 Identities=18% Similarity=0.334 Sum_probs=54.0
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHc
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHIN 112 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~ 112 (127)
.++|--+..-+..+++-.+.+.|+.|+.++|+--. ++....-+.+... ..-||++.-+...|-....|+++.+.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~-geh~epwFmrlNp-~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQ-GEHKEPWFMRLNP-GGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCcc-ccccCchheecCC-CCCCceEecCCeecccHHHHHHHHHH
Confidence 77898999999999999999999999999998521 1111111223322 24699887777888899999998664
No 292
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=74.90 E-value=5.7 Score=27.48 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.4
Q ss_pred HhCCCCCccEEEECCEEEeecHHHHH
Q 033109 83 LLGTSPAVPVVFIGGKLVGSMDRVMA 108 (127)
Q Consensus 83 ~~g~~~~vP~ifv~g~~igG~~~~~~ 108 (127)
..|. .++|+++|||+.+-|.+.+..
T Consensus 162 ~~gi-~gvPtfvv~g~~~~G~~~l~~ 186 (192)
T cd03022 162 ARGV-FGVPTFVVDGEMFWGQDRLDM 186 (192)
T ss_pred HcCC-CcCCeEEECCeeecccccHHH
Confidence 4576 589999999999988887654
No 293
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=74.83 E-value=10 Score=25.33 Aligned_cols=48 Identities=19% Similarity=0.450 Sum_probs=29.8
Q ss_pred CChhHH-----------HHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEE
Q 033109 44 SCCMCH-----------AVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLV 100 (127)
Q Consensus 44 ~Cp~C~-----------~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~i 100 (127)
+|+.|. .++..|+.+|+......+...++ ++...+ -..|.|.|||+.|
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~------~~~~~~---~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE------EFARQP---LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH------HHhhcc---cCCCeeeECCEeh
Confidence 799996 44555677788754444433332 122222 3689999999877
No 294
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=73.69 E-value=8.3 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=14.9
Q ss_pred EEEEEeCC-ChhHHHHHHHHHh
Q 033109 37 VVIFSISS-CCMCHAVKRLFCG 57 (127)
Q Consensus 37 v~if~~~~-Cp~C~~~k~~L~~ 57 (127)
|+.|+.+| ||.|.+-..-|.+
T Consensus 48 vl~f~~s~~cp~C~~e~~~l~~ 69 (167)
T PRK00522 48 VLNIFPSIDTGVCATSVRKFNQ 69 (167)
T ss_pred EEEEEcCCCCCccHHHHHHHHH
Confidence 45577777 9999976655544
No 295
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=73.67 E-value=4.5 Score=26.69 Aligned_cols=50 Identities=24% Similarity=0.468 Sum_probs=29.5
Q ss_pred CChhHHHHHHHHHhcCC---CcEEEEecCCCChHHHHHHHHHHhCC-CCCccEEEECC
Q 033109 44 SCCMCHAVKRLFCGMGV---NPTVYELDEDPKGKDMEKALMRLLGT-SPAVPVVFIGG 97 (127)
Q Consensus 44 ~Cp~C~~~k~~L~~~~i---~~~~v~id~~~~~~~~~~~l~~~~g~-~~~vP~ifv~g 97 (127)
.||+|..+.-+|..+-. ...+..|+--.- +. .+-...|. .-+.|++..++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP-R~---~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP-RQ---AVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc-hH---HHHHHhChhccCCCEEEeCC
Confidence 39999999999987632 233333333221 22 34444553 34799998754
No 296
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=72.56 E-value=10 Score=28.57 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=17.1
Q ss_pred HHHHhcCCcEEEEE--eCCChhHHHHHHHH
Q 033109 28 IERLASENAVVIFS--ISSCCMCHAVKRLF 55 (127)
Q Consensus 28 ~~~~~~~~~v~if~--~~~Cp~C~~~k~~L 55 (127)
+.+......+++|. ..|||.|..-...|
T Consensus 92 Lsd~~kgk~vVL~FyPa~ftpvCt~El~~l 121 (261)
T PTZ00137 92 SSDYFKDSYGLLVFYPLDFTFVCPSELLGF 121 (261)
T ss_pred HHHHcCCCeEEEEEECCCCCCCCHHHHHHH
Confidence 44544555566543 58999998744433
No 297
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=72.33 E-value=15 Score=24.92 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=39.8
Q ss_pred HHHHHHhc--CCcEEE--EEeCCChhHHHHHHHHHhcC--C-C---cEEEEecCCCChHHHHHHHHHHhCCCCCccEEE-
Q 033109 26 EHIERLAS--ENAVVI--FSISSCCMCHAVKRLFCGMG--V-N---PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF- 94 (127)
Q Consensus 26 ~~~~~~~~--~~~v~i--f~~~~Cp~C~~~k~~L~~~~--i-~---~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if- 94 (127)
-.+.+++. ..+|++ |+.++-|.|-+.-.+|.+.. + + .-.+|+++.++-. +.+......-..|
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn-------~~yel~dP~tvmFF 81 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFN-------QMYELYDPCTVMFF 81 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCH-------HHTTS-SSEEEEEE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhh-------cccccCCCeEEEEE
Confidence 34556552 445543 99999999999999986642 1 1 3456777766632 2333211233444
Q ss_pred ECCEEE
Q 033109 95 IGGKLV 100 (127)
Q Consensus 95 v~g~~i 100 (127)
.+++++
T Consensus 82 ~rnkhm 87 (133)
T PF02966_consen 82 FRNKHM 87 (133)
T ss_dssp ETTEEE
T ss_pred ecCeEE
Confidence 488877
No 298
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=72.28 E-value=6.2 Score=26.87 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=17.0
Q ss_pred HHhCCCCCccEEEECCEEEeecHH
Q 033109 82 RLLGTSPAVPVVFIGGKLVGSMDR 105 (127)
Q Consensus 82 ~~~g~~~~vP~ifv~g~~igG~~~ 105 (127)
...|. .++|+++|||+.+-+..+
T Consensus 137 ~~~gi-~gTPt~iInG~~~~~~~~ 159 (178)
T cd03019 137 KKYKI-TGVPAFVVNGKYVVNPSA 159 (178)
T ss_pred HHcCC-CCCCeEEECCEEEEChhh
Confidence 34576 589999999997755443
No 299
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=70.81 E-value=31 Score=23.61 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=37.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE---CCEEE
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI---GGKLV 100 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv---~g~~i 100 (127)
.+.+++-+.-..=..++.+++++++.+..+.+.... . ..+...+|. .++|+.|+ +|+.+
T Consensus 65 ~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~--~---~~l~~~y~v-~~iPt~vlId~~G~Vv 126 (146)
T cd03008 65 QLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEF--R---RELEAQFSV-EELPTVVVLKPDGDVL 126 (146)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCceeecccchH--H---HHHHHHcCC-CCCCEEEEECCCCcEE
Confidence 455544443334456889999999887555444321 1 146677787 58999875 56666
No 300
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=70.52 E-value=14 Score=24.73 Aligned_cols=49 Identities=10% Similarity=-0.036 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHhc-CCcEEEEEeCCChhHH------------HHHHHHHhcCCCcEEEEecC
Q 033109 21 GGDPLEHIERLAS-ENAVVIFSISSCCMCH------------AVKRLFCGMGVNPTVYELDE 69 (127)
Q Consensus 21 ~~~~~~~~~~~~~-~~~v~if~~~~Cp~C~------------~~k~~L~~~~i~~~~v~id~ 69 (127)
..++.+.++++-+ ...|++.|......+. .+..+|++++++|..+.+..
T Consensus 26 ~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 26 ILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 3455555655533 4456666666666655 88999999999998877765
No 301
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=70.43 E-value=6.7 Score=27.06 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=20.6
Q ss_pred HHhCCCCCccEEEECCE-EEeecHHHHHh
Q 033109 82 RLLGTSPAVPVVFIGGK-LVGSMDRVMAS 109 (127)
Q Consensus 82 ~~~g~~~~vP~ifv~g~-~igG~~~~~~~ 109 (127)
...|. .++|+++|||+ .+-|.+.+-.+
T Consensus 161 ~~~gv-~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 161 RQLGV-FGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHTTC-SSSSEEEETTTEEEESCSSHHHH
T ss_pred HHcCC-cccCEEEECCEEEEECCCCHHHH
Confidence 45677 58999999999 78787766443
No 302
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=70.10 E-value=10 Score=28.14 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHhcCCcEEEEEeC-----CChhHHHHHHHHHhc------CCCcEEEEecCCCChHHHHHHHHHHhCC
Q 033109 20 LGGDPLEHIERLASENAVVIFSIS-----SCCMCHAVKRLFCGM------GVNPTVYELDEDPKGKDMEKALMRLLGT 86 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~if~~~-----~Cp~C~~~k~~L~~~------~i~~~~v~id~~~~~~~~~~~l~~~~g~ 86 (127)
.++...+-++++-++-.|++|..+ .-++=..++.+|+++ ++.++.+|.+..++.. +......|.
T Consensus 12 LS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~---~~~~~~~Gi 86 (271)
T PF09822_consen 12 LSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEA---EEKAKEYGI 86 (271)
T ss_pred CCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHH---HHHHHhcCC
Confidence 355566667776666678888877 567778889999877 4667777765555422 244455664
No 303
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=69.55 E-value=3.2 Score=28.84 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=16.8
Q ss_pred cEEEEEeCCChhHHHHHHHHH
Q 033109 36 AVVIFSISSCCMCHAVKRLFC 56 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~ 56 (127)
.|.+|+.+.||+|-.+.+.|+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 478999999999986665554
No 304
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.94 E-value=2.7 Score=31.10 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=17.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHhc
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~ 58 (127)
.|.+|+..-||+|--.++-|++.
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHH
Confidence 57789999999997666666543
No 305
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=68.77 E-value=9.9 Score=27.15 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=19.8
Q ss_pred cEEEEEeCCChhHHHHHHHH----HhcCCCcE
Q 033109 36 AVVIFSISSCCMCHAVKRLF----CGMGVNPT 63 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L----~~~~i~~~ 63 (127)
+|-+|+...||+|--+++-| ++.+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~ 33 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDIT 33 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEE
Confidence 57799999999997665555 34555533
No 306
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.69 E-value=7.6 Score=28.24 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=20.9
Q ss_pred HHHHhCCCCCccEEEECCEEEeecHHHHH
Q 033109 80 LMRLLGTSPAVPVVFIGGKLVGSMDRVMA 108 (127)
Q Consensus 80 l~~~~g~~~~vP~ifv~g~~igG~~~~~~ 108 (127)
+...+|. ..+|++||+|..++|..++.+
T Consensus 207 ~a~~~gv-~gTPt~~v~~~~~~g~~~~~~ 234 (244)
T COG1651 207 LAQQLGV-NGTPTFIVNGKLVPGLPDLDE 234 (244)
T ss_pred HHHhcCC-CcCCeEEECCeeecCCCCHHH
Confidence 3345676 589999999998888776433
No 307
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=68.66 E-value=5.3 Score=25.79 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=14.1
Q ss_pred cEEEEEeCCChhHHHH
Q 033109 36 AVVIFSISSCCMCHAV 51 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~ 51 (127)
+|.+|+.+-||+|++.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5889999999999863
No 308
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=68.12 E-value=4.9 Score=23.63 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.3
Q ss_pred EEECCEEEeecHHHHHh
Q 033109 93 VFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 93 ifv~g~~igG~~~~~~~ 109 (127)
||+||.++|=.++-.++
T Consensus 1 VFlNG~~iG~~~~p~~l 17 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEEL 17 (63)
T ss_dssp EEETTEEEEEESSHHHH
T ss_pred CEECCEEEEEEcCHHHH
Confidence 79999999987765443
No 309
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=65.57 E-value=11 Score=26.13 Aligned_cols=29 Identities=14% Similarity=0.416 Sum_probs=25.7
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCC
Q 033109 33 SENAVVIFSISSCCMCHAVKRLFCGMGVN 61 (127)
Q Consensus 33 ~~~~v~if~~~~Cp~C~~~k~~L~~~~i~ 61 (127)
.+.+|++|+.++|..+..+-..|+.+|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 45689999999999999999999999965
No 310
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=65.51 E-value=45 Score=23.47 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=40.6
Q ss_pred CCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCCC------------cEEEEecCCCChHHHHHHHHHHhCCCCC
Q 033109 22 GDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVN------------PTVYELDEDPKGKDMEKALMRLLGTSPA 89 (127)
Q Consensus 22 ~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~------------~~~v~id~~~~~~~~~~~l~~~~g~~~~ 89 (127)
+++.+-++.+-. ..+.+-..|.+..=..|+.+|+.+++. |...+|........+ +.+++.+|.. .
T Consensus 48 pdv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf-~~i~~~tgI~-y 124 (169)
T PF12689_consen 48 PDVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHF-RRIHRKTGIP-Y 124 (169)
T ss_dssp TTHHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHH-HHHHHHH----G
T ss_pred cCHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHH-HHHHHhcCCC-h
Confidence 344444554443 556565555555559999999998877 455677766544443 4566678863 4
Q ss_pred ccEEEECCE
Q 033109 90 VPVVFIGGK 98 (127)
Q Consensus 90 vP~ifv~g~ 98 (127)
-=.+|+|++
T Consensus 125 ~eMlFFDDe 133 (169)
T PF12689_consen 125 EEMLFFDDE 133 (169)
T ss_dssp GGEEEEES-
T ss_pred hHEEEecCc
Confidence 558888876
No 311
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=64.51 E-value=15 Score=29.80 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=32.7
Q ss_pred HHHHHhcCCcEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEe
Q 033109 27 HIERLASENAVVIFSI-----SSCCMCHAVKRLFCGMGVNPTVYEL 67 (127)
Q Consensus 27 ~~~~~~~~~~v~if~~-----~~Cp~C~~~k~~L~~~~i~~~~v~i 67 (127)
-+..+...+.|++=.+ ++|-||+-++..|...|.+...|++
T Consensus 209 iiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~ 254 (583)
T KOG2454|consen 209 IIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQV 254 (583)
T ss_pred HHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhhe
Confidence 3556677888887554 6799999999999999988777764
No 312
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=63.14 E-value=24 Score=25.04 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=20.4
Q ss_pred HHHHhcCCcEEEEE-eCCChhHHHHHHHH-------HhcCCCcEEEEecC
Q 033109 28 IERLASENAVVIFS-ISSCCMCHAVKRLF-------CGMGVNPTVYELDE 69 (127)
Q Consensus 28 ~~~~~~~~~v~if~-~~~Cp~C~~~k~~L-------~~~~i~~~~v~id~ 69 (127)
+.+.....-+++|+ ..+||.|.....-| ++.|+..--+.+|.
T Consensus 31 l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 31 LSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred HHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 34443332333444 35688887544333 33455555555554
No 313
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=63.11 E-value=23 Score=24.62 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=17.4
Q ss_pred HhCCCCCccEEEECCE-EEeecHHHH
Q 033109 83 LLGTSPAVPVVFIGGK-LVGSMDRVM 107 (127)
Q Consensus 83 ~~g~~~~vP~ifv~g~-~igG~~~~~ 107 (127)
..|. .++|+++|||+ .+.|..+..
T Consensus 170 ~~gv-~G~Pt~vv~g~~~~~G~~~~~ 194 (201)
T cd03024 170 QLGI-SGVPFFVFNGKYAVSGAQPPE 194 (201)
T ss_pred HCCC-CcCCEEEECCeEeecCCCCHH
Confidence 4576 58999999987 456766543
No 314
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=61.98 E-value=20 Score=24.47 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=15.2
Q ss_pred HHHHhcCCcEEEEEe--CCChhHHHH
Q 033109 28 IERLASENAVVIFSI--SSCCMCHAV 51 (127)
Q Consensus 28 ~~~~~~~~~v~if~~--~~Cp~C~~~ 51 (127)
+.++....++++|.. .+||.|..-
T Consensus 23 L~~~~~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 23 LSELFKGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred HHHHhCCCcEEEEEeCCCCCCCCchh
Confidence 444444556666554 579999865
No 315
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=61.68 E-value=7.9 Score=26.74 Aligned_cols=28 Identities=7% Similarity=-0.090 Sum_probs=19.7
Q ss_pred EEEEEeCCChhHHHHHHHHH----hcCCCcEE
Q 033109 37 VVIFSISSCCMCHAVKRLFC----GMGVNPTV 64 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~----~~~i~~~~ 64 (127)
|.+|+...||+|--+...|+ ++++.++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~ 32 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRY 32 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEE
Confidence 45899999999987766665 44555443
No 316
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=60.75 E-value=44 Score=21.78 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=34.9
Q ss_pred CHHHHHHHHhcCCcE-EEEE-eC----CChhHHH------HHHHHHhcCCCcEEE--EecCCCChHHHHHHHHHHhCCCC
Q 033109 23 DPLEHIERLASENAV-VIFS-IS----SCCMCHA------VKRLFCGMGVNPTVY--ELDEDPKGKDMEKALMRLLGTSP 88 (127)
Q Consensus 23 ~~~~~~~~~~~~~~v-~if~-~~----~Cp~C~~------~k~~L~~~~i~~~~v--~id~~~~~~~~~~~l~~~~g~~~ 88 (127)
...+.++.+-++.|. .||- .+ ||-+|+. +.++|++ .|-.. |+.. +++. .+....+. .
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~-~eg~----~la~~l~~-~ 75 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAK-PEGY----RVSQALRE-R 75 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCC-hHHH----HHHHHhCC-C
Confidence 455666777666664 3443 44 5888853 3444443 34333 4443 2332 36666776 5
Q ss_pred CccEEE
Q 033109 89 AVPVVF 94 (127)
Q Consensus 89 ~vP~if 94 (127)
++|.+.
T Consensus 76 ~~P~~~ 81 (116)
T cd02991 76 TYPFLA 81 (116)
T ss_pred CCCEEE
Confidence 899984
No 317
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=60.67 E-value=14 Score=23.35 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=22.7
Q ss_pred CHHHHHHHHhc--CCc--EEEEEeCCChhHHHHHHHHHhc
Q 033109 23 DPLEHIERLAS--ENA--VVIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 23 ~~~~~~~~~~~--~~~--v~if~~~~Cp~C~~~k~~L~~~ 58 (127)
+..+.++.... .++ +.+|+.+. ++|..++.+|++.
T Consensus 5 ~~~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~ 43 (94)
T cd02974 5 NLKQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEI 43 (94)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHH
Confidence 33444444443 334 45577766 9999999999875
No 318
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=58.95 E-value=13 Score=25.74 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=33.3
Q ss_pred cEEEEEe--CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHH
Q 033109 36 AVVIFSI--SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRL 83 (127)
Q Consensus 36 ~v~if~~--~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~ 83 (127)
+|.|.+. +.=++++++...|+++|++|+..-+.-+.....+.+.+++.
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 3444443 46899999999999999999887777777766666566543
No 319
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.91 E-value=89 Score=26.98 Aligned_cols=74 Identities=22% Similarity=0.449 Sum_probs=41.1
Q ss_pred HHHHHHhc-CCcEEE-EEeCCChhHHHH-HHHHHh------cCCCcEEEEecC--CCChHHH-HHHHHHHhCCCCCccE-
Q 033109 26 EHIERLAS-ENAVVI-FSISSCCMCHAV-KRLFCG------MGVNPTVYELDE--DPKGKDM-EKALMRLLGTSPAVPV- 92 (127)
Q Consensus 26 ~~~~~~~~-~~~v~i-f~~~~Cp~C~~~-k~~L~~------~~i~~~~v~id~--~~~~~~~-~~~l~~~~g~~~~vP~- 92 (127)
+.+.++-. +.||.+ .+.++|..|+-+ +.-+.+ +|-.|.-|.||+ .|+-..+ .+..+..+|+ .++|.
T Consensus 34 eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~-GGWPLt 112 (667)
T COG1331 34 EAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQ-GGWPLT 112 (667)
T ss_pred HHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccC-CCCcee
Confidence 33444443 456655 667899999844 333322 344566666665 4554444 3344556776 47776
Q ss_pred EEE--CCEEE
Q 033109 93 VFI--GGKLV 100 (127)
Q Consensus 93 ifv--~g~~i 100 (127)
||+ +|+++
T Consensus 113 VfLTPd~kPF 122 (667)
T COG1331 113 VFLTPDGKPF 122 (667)
T ss_pred EEECCCCcee
Confidence 444 55533
No 320
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=57.02 E-value=36 Score=21.96 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=33.3
Q ss_pred CChhHHHH-HHHHHhcCCCcEEEEecCC--CChHHHHHHHHHHhCCCCCccEEEECCEEEe
Q 033109 44 SCCMCHAV-KRLFCGMGVNPTVYELDED--PKGKDMEKALMRLLGTSPAVPVVFIGGKLVG 101 (127)
Q Consensus 44 ~Cp~C~~~-k~~L~~~~i~~~~v~id~~--~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ig 101 (127)
.|-.|..+ +++|.+.+|+...+.+... .+..- ....++. --.|-.||.+.|
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~I----~sd~~~~---~~sIt~NG~H~g 73 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPFI----YSDRLGP---QESITTNGRHYG 73 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCcee----hhhhhcC---CcceeeCCEEEE
Confidence 69999755 8999999999999998873 33221 2223331 145666776654
No 321
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=56.23 E-value=25 Score=25.90 Aligned_cols=70 Identities=10% Similarity=0.173 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHhcCCcEEE-EEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC
Q 033109 21 GGDPLEHIERLASENAVVI-FSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG 96 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~i-f~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~ 96 (127)
.+++..++.++-..-=|++ .++.+-|-|.-+...|++++..|..+..-..+.... + ..+.. ...|++||-
T Consensus 98 g~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c----I-pNYPe-~nlPTl~VY 168 (240)
T KOG3170|consen 98 GPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC----I-PNYPE-SNLPTLLVY 168 (240)
T ss_pred chHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc----c-CCCcc-cCCCeEEEe
Confidence 4566666666655554555 678999999999999999988775444333222211 1 22343 479999984
No 322
>PRK04195 replication factor C large subunit; Provisional
Probab=56.07 E-value=84 Score=25.57 Aligned_cols=63 Identities=11% Similarity=0.233 Sum_probs=44.0
Q ss_pred cccccCCCCCCCCC--CCCHHHHHHHHhc-------CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033109 7 SWSCSYMPSSRGAL--GGDPLEHIERLAS-------ENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDE 69 (127)
Q Consensus 7 ~~~~~~~p~~~~~~--~~~~~~~~~~~~~-------~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~ 69 (127)
.|.-.|.|..-... .....+.++..+. ...+.+|+-++|.--..++.+.++++.++.+++...
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 58778888854222 2334445555443 345888999999999999999999987766665543
No 323
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.35 E-value=49 Score=20.59 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCcEEEEEeCCChh--HHHHHHHHHhcCCCcEEE
Q 033109 24 PLEHIERLASENAVVIFSISSCCM--CHAVKRLFCGMGVNPTVY 65 (127)
Q Consensus 24 ~~~~~~~~~~~~~v~if~~~~Cp~--C~~~k~~L~~~~i~~~~v 65 (127)
....+...+....++|+.+..+.+ +..+++.-++.++++...
T Consensus 38 ~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 38 KASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred chhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 334577777777777776766655 456677777777776555
No 324
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=55.08 E-value=44 Score=20.04 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI 95 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv 95 (127)
..+|.+.+-+....=...++.+++.+.++..+.++... ...+.+.++. ..+|++++
T Consensus 33 ~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~i-~~iP~~~l 88 (95)
T PF13905_consen 33 KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-----NSELLKKYGI-NGIPTLVL 88 (95)
T ss_dssp TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-----HHHHHHHTT--TSSSEEEE
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-----HHHHHHHCCC-CcCCEEEE
Confidence 45676655555577788899999998877766655432 2257778887 58999976
No 325
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.00 E-value=7.9 Score=27.04 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=15.1
Q ss_pred EEEEEeCCChhHHHHHHHHH
Q 033109 37 VVIFSISSCCMCHAVKRLFC 56 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~ 56 (127)
|.+|+..-||+|--+..-|.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 45899999999986555543
No 326
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=54.20 E-value=53 Score=20.64 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=40.4
Q ss_pred CcEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEEecC---------------CCChHHHHHHHHHHhCCCCCccEEEEC
Q 033109 35 NAVVIFSISS---CCMCHAVKRLFCGMGVNPTVYELDE---------------DPKGKDMEKALMRLLGTSPAVPVVFIG 96 (127)
Q Consensus 35 ~~v~if~~~~---Cp~C~~~k~~L~~~~i~~~~v~id~---------------~~~~~~~~~~l~~~~g~~~~vP~ifv~ 96 (127)
.+|++.+..+ --...++++++++.|++++..-... .|.-....+.+++.... ..+|...|+
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~-~~ipv~~I~ 82 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDK-KGIPVEVIN 82 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhh-cCCCEEEeC
Confidence 3455554433 2344677777777777754432221 23334456667776664 468999998
Q ss_pred CEEEeecH
Q 033109 97 GKLVGSMD 104 (127)
Q Consensus 97 g~~igG~~ 104 (127)
....|-.+
T Consensus 83 ~~~Y~~md 90 (95)
T TIGR00853 83 GAQYGKLT 90 (95)
T ss_pred hhhcccCC
Confidence 87666443
No 327
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.90 E-value=13 Score=27.73 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=40.5
Q ss_pred EEEEEeCCChhHHHHHHHHHhcC-------CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EECCEEE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMG-------VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FIGGKLV 100 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~-------i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv~g~~i 100 (127)
++-|...|.|.|.+.-..+.++. .+|-.+||..-++..+-. .+ ..++....+|++ |-+|+-+
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kf-ri-s~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKF-RI-SLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhe-ee-ccCcccccCCeEEEEccchhh
Confidence 45588999999999888887663 456789999988754310 11 112223478886 4466544
No 328
>PLN02590 probable tyrosine decarboxylase
Probab=53.30 E-value=1.3e+02 Score=25.28 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=51.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCC---cEEEEecCC----CChHHHHHHHHHHhCCCCCccEEEE---CCEEEeecH
Q 033109 35 NAVVIFSISSCCMCHAVKRLFCGMGVN---PTVYELDED----PKGKDMEKALMRLLGTSPAVPVVFI---GGKLVGSMD 104 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L~~~~i~---~~~v~id~~----~~~~~~~~~l~~~~g~~~~vP~ifv---~g~~igG~~ 104 (127)
.++++|++....+|. .+.+.=+|+. .+.+.+|.. -+...+++.+.+-... ...|.+.| +-...|.+|
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~-g~~P~~VvaTaGTT~tGaiD 304 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAK-GFIPFFICATVGTTSSAAVD 304 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhc-CCCcEEEEEEeCCCCCcccC
Confidence 468999999999984 4555555653 566777642 3566677777654432 24777654 445678889
Q ss_pred HHHHhhHcCCcHHHHHhcC
Q 033109 105 RVMASHINGTLVPLLKEAG 123 (127)
Q Consensus 105 ~~~~~~~~g~L~~~l~~~g 123 (127)
++.++ .++.++.|
T Consensus 305 pl~~I------a~i~~~~g 317 (539)
T PLN02590 305 PLVPL------GNIAKKYG 317 (539)
T ss_pred CHHHH------HHHHHHhC
Confidence 88664 45555555
No 329
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=51.11 E-value=70 Score=25.23 Aligned_cols=12 Identities=17% Similarity=0.559 Sum_probs=7.1
Q ss_pred CccEEEECCEEE
Q 033109 89 AVPVVFIGGKLV 100 (127)
Q Consensus 89 ~vP~ifv~g~~i 100 (127)
.+|.+.|++.+-
T Consensus 343 GIP~L~iE~D~~ 354 (377)
T TIGR03190 343 GIPTLFLEFDIT 354 (377)
T ss_pred CCCEEEEecCCC
Confidence 466666666544
No 330
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=49.33 E-value=37 Score=22.98 Aligned_cols=63 Identities=19% Similarity=0.386 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcCCcHHHHHh
Q 033109 48 CHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKE 121 (127)
Q Consensus 48 C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g~L~~~l~~ 121 (127)
-.+.++.|.++|+....+++.... ...+.+.+.. .-.||+.| |.-..+....++-.|.+.|++
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~-~~~~~~~i~~-------ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRN-DADILEAIRE-------ADAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCG-HHHHHHHHHH-------SSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCC-hHHHHHHHHh-------CCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 467889999999876666665542 2243334432 33565544 122244455556667777765
No 331
>PTZ00494 tuzin-like protein; Provisional
Probab=47.76 E-value=47 Score=27.88 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=42.1
Q ss_pred CcEEEEEe-CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEE
Q 033109 35 NAVVIFSI-SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKL 99 (127)
Q Consensus 35 ~~v~if~~-~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ 99 (127)
.+|++|+. .+|.-|.-.+..+.+.+.+.-.+||.-.+|.- ...... -.||.|-+.|.+
T Consensus 395 PRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtL------rsVVKA-LgV~nve~CGDl 453 (664)
T PTZ00494 395 PRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTL------RSVVRA-LGVSNVEVCGDL 453 (664)
T ss_pred CcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchH------HHHHHH-hCCCChhhhccH
Confidence 35878776 68999999999999999999999998877742 222221 246777666643
No 332
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=47.20 E-value=54 Score=25.81 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=45.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCCCccEEEE--CC-EEEeecHHHHH
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDP--KGKDMEKALMRLLGTSPAVPVVFI--GG-KLVGSMDRVMA 108 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~--~~~~~~~~l~~~~g~~~~vP~ifv--~g-~~igG~~~~~~ 108 (127)
..+.++|....+.+|. .+...-+|+....+.+|.+- +...+++.+.+.... ..+|.+.| -| ...|.+|++.+
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~-g~~p~~vvat~Gtt~~Ga~D~l~~ 215 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIAN-GKTPFAVVATAGTTNTGAIDPLEE 215 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHT-TEEEEEEEEEBS-TTTSBB-SHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccc-cccceeeeccCCCcccccccCHHH
Confidence 3578999999999987 66667778887777777632 445666666654442 24784433 34 45678887765
Q ss_pred h
Q 033109 109 S 109 (127)
Q Consensus 109 ~ 109 (127)
+
T Consensus 216 i 216 (373)
T PF00282_consen 216 I 216 (373)
T ss_dssp H
T ss_pred H
Confidence 3
No 333
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=46.84 E-value=1e+02 Score=21.84 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCcEEEEEeC-----CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEE
Q 033109 25 LEHIERLASENAVVIFSIS-----SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKL 99 (127)
Q Consensus 25 ~~~~~~~~~~~~v~if~~~-----~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ 99 (127)
.+.++..-.++.+.+|+.+ .-+.-.+++.+=++.||+.-...+..-....++.+.+-...-...+--.+|||++.
T Consensus 70 ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRl 149 (190)
T KOG2961|consen 70 IERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRL 149 (190)
T ss_pred HHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhCCcccCChhHeEEEccch
Confidence 4455556678889999864 46777788888888999876666665555555433332211112233467899886
Q ss_pred EeecHHHHHhhHcCCcHHHHH
Q 033109 100 VGSMDRVMASHINGTLVPLLK 120 (127)
Q Consensus 100 igG~~~~~~~~~~g~L~~~l~ 120 (127)
+ .|+.-+..+|.+.-+++
T Consensus 150 f---TDI~~aN~mGs~gVw~~ 167 (190)
T KOG2961|consen 150 F---TDIVYANRMGSLGVWTE 167 (190)
T ss_pred h---hhHhhhhhccceeEEec
Confidence 5 78888888888765553
No 334
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=46.15 E-value=73 Score=19.92 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhcCCCcEEEEecC---------------CCChHHHHHHHHHHhCCCCCccEEEECCEEEeecH
Q 033109 46 CMCHAVKRLFCGMGVNPTVYELDE---------------DPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMD 104 (127)
Q Consensus 46 p~C~~~k~~L~~~~i~~~~v~id~---------------~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~ 104 (127)
-...++++++++.|++++..-.+. .|.-....+.+++.... ..+|...|+.+..|-.+
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~-~~~pv~~I~~~~Y~~~d 86 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAE-YGIPVAVIDMMDYGMMN 86 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhcc-CCCcEEEcChHhcccCC
Confidence 345566666666666643332221 23334455667665554 47999999988776443
No 335
>PRK00766 hypothetical protein; Provisional
Probab=44.88 E-value=46 Score=24.07 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=30.0
Q ss_pred CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecH--HHHHhh
Q 033109 59 GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMD--RVMASH 110 (127)
Q Consensus 59 ~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~--~~~~~~ 110 (127)
|+-+..+.+|-.+....+.+.+.. ...+..+=.|+++|--+|||+ |+..++
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~-~~~r~~i~~V~L~Git~agFNvvD~~~l~ 94 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNS-SRHKGQLRVIMLDGITYGGFNVVDIEELY 94 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHh-cccccceEEEEECCEeeeeeEEecHHHHH
Confidence 344667777776655554433332 121235667788888888887 444443
No 336
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=44.64 E-value=1e+02 Score=24.27 Aligned_cols=45 Identities=7% Similarity=-0.055 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCCCcEE
Q 033109 20 LGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTV 64 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~ 64 (127)
.+=...+.+.++++..-+.||+-+.|..-..+..+.+.+.|+|..
T Consensus 48 dsf~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~ 92 (372)
T cd06387 48 NSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFIT 92 (372)
T ss_pred ChHHHHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeee
Confidence 344556667777888888899999998888889998999998754
No 337
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=44.61 E-value=1.4e+02 Score=23.12 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=37.2
Q ss_pred EEeCCChhHHHHHHHHHhc---CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHh
Q 033109 40 FSISSCCMCHAVKRLFCGM---GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 40 f~~~~Cp~C~~~k~~L~~~---~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~ 109 (127)
...-+|..|.+++.+|+.+ +...+++-||.+.+. ++..+.+... ..+|.|-|.| ..|.+++...+
T Consensus 80 lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~--L~~a~~~L~~--~~~p~l~v~~-l~gdy~~~l~~ 147 (319)
T TIGR03439 80 LVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSE--LQRTLAELPL--GNFSHVRCAG-LLGTYDDGLAW 147 (319)
T ss_pred EEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHH--HHHHHHhhhh--ccCCCeEEEE-EEecHHHHHhh
Confidence 3366899999999998765 234555555554432 3333333331 2467666655 45556555443
No 338
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=44.08 E-value=1.3e+02 Score=23.53 Aligned_cols=87 Identities=8% Similarity=0.052 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEe----------cCCCCh-HHHHHHHHHHhCCCCC
Q 033109 21 GGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYEL----------DEDPKG-KDMEKALMRLLGTSPA 89 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~i----------d~~~~~-~~~~~~l~~~~g~~~~ 89 (127)
+=...+.+.++++..-+.||+-..+..+..+..+.++++||+..... ...|.- ..+.. +.+..| |..
T Consensus 49 sf~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~-~i~~~~-wk~ 126 (371)
T cd06388 49 SFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLS-LLDHYE-WNR 126 (371)
T ss_pred hhHHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHH-HHHhcC-ceE
Confidence 44556667777788888899999999999999999999998754221 112221 11222 334456 556
Q ss_pred ccEEEECCEEEeecHHHHHh
Q 033109 90 VPVVFIGGKLVGSMDRVMAS 109 (127)
Q Consensus 90 vP~ifv~g~~igG~~~~~~~ 109 (127)
+=.++..+.-++..+.+.+.
T Consensus 127 vaiiYd~~~~~~~lq~l~~~ 146 (371)
T cd06388 127 FVFLYDTDRGYSILQAIMEK 146 (371)
T ss_pred EEEEecCCccHHHHHHHHHh
Confidence 76777545545555555444
No 339
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.52 E-value=21 Score=23.20 Aligned_cols=17 Identities=53% Similarity=0.780 Sum_probs=13.9
Q ss_pred CCccEEEECCEEEeecH
Q 033109 88 PAVPVVFIGGKLVGSMD 104 (127)
Q Consensus 88 ~~vP~ifv~g~~igG~~ 104 (127)
.-.|.||.||+.||=.+
T Consensus 80 ECTplvF~n~~LvgWG~ 96 (102)
T PF11399_consen 80 ECTPLVFKNGKLVGWGD 96 (102)
T ss_pred ceEEEEEECCEEEEEcH
Confidence 35899999999998444
No 340
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=43.48 E-value=25 Score=20.17 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=27.8
Q ss_pred EEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCE
Q 033109 37 VVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGK 98 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~ 98 (127)
+.+|+...=.-+..++.+|++.||++...+-....- ....|. .+.+.|+|..+
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~--------~g~~g~-~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY--------AGEPGT-GGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----------S---SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh--------hcccCc-cCceEEEECHH
Confidence 356777777778899999999999988876554332 111343 24588888653
No 341
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=42.84 E-value=88 Score=19.94 Aligned_cols=53 Identities=15% Similarity=0.015 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCcEEEEec---------------CCCChHHHHHHHHHHhCCCCCccEEEECCEEEe
Q 033109 48 CHAVKRLFCGMGVNPTVYELD---------------EDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVG 101 (127)
Q Consensus 48 C~~~k~~L~~~~i~~~~v~id---------------~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ig 101 (127)
..++++++++.|++++..-.. ..|.-+...+.+++..+. ..+|+..|+.+..|
T Consensus 17 a~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~-~~ipv~~I~~~~Yg 84 (99)
T cd05565 17 ANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDR-LGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhh-cCCCEEEeCHHHHh
Confidence 345566666666654332111 124445566777777775 47999999976655
No 342
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=42.08 E-value=25 Score=24.55 Aligned_cols=20 Identities=15% Similarity=0.405 Sum_probs=14.7
Q ss_pred EEEeCCChhHHHHHHHHHhc
Q 033109 39 IFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 39 if~~~~Cp~C~~~k~~L~~~ 58 (127)
+|+.|-|++|-...+.+.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl 21 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKL 21 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHH
Confidence 68999999999887777654
No 343
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.92 E-value=42 Score=26.24 Aligned_cols=52 Identities=25% Similarity=0.463 Sum_probs=32.0
Q ss_pred EEEEEe----CCChhHHHHHHHHHhc------------C--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC
Q 033109 37 VVIFSI----SSCCMCHAVKRLFCGM------------G--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG 96 (127)
Q Consensus 37 v~if~~----~~Cp~C~~~k~~L~~~------------~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~ 96 (127)
|++|+. ..|+-|+.+.+-++-. + +=|..||.++.++. . +..+. .++|++++=
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~------F-q~l~l-n~~P~l~~f 133 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV------F-QQLNL-NNVPHLVLF 133 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH------H-HHhcc-cCCCeEEEe
Confidence 566775 4699999887655321 1 12566777765542 2 23454 479999863
No 344
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=41.89 E-value=31 Score=28.20 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=23.6
Q ss_pred CCHHHHHHHHhc--CCc--EEEEEeCCChhHHHHHHHHHhc
Q 033109 22 GDPLEHIERLAS--ENA--VVIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 22 ~~~~~~~~~~~~--~~~--v~if~~~~Cp~C~~~k~~L~~~ 58 (127)
++..+.+++++. .++ +.+|.. .|++|..++.+|++.
T Consensus 4 ~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 4 ANLKTQLKQYLELLERPIELVASLD-DSEKSAELKELLEEI 43 (517)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHH
Confidence 334444555443 233 445655 799999999999876
No 345
>KOG2433 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.68 E-value=1.8e+02 Score=23.83 Aligned_cols=94 Identities=12% Similarity=0.238 Sum_probs=61.5
Q ss_pred cccccccccCCCCC----------CCCCCCCHHHHHHHHh---cCCcEEEEEeCCChhHHHHHHHHHh-cCCCcEEEEec
Q 033109 3 YQTESWSCSYMPSS----------RGALGGDPLEHIERLA---SENAVVIFSISSCCMCHAVKRLFCG-MGVNPTVYELD 68 (127)
Q Consensus 3 ~~~~~~~~~~~p~~----------~~~~~~~~~~~~~~~~---~~~~v~if~~~~Cp~C~~~k~~L~~-~~i~~~~v~id 68 (127)
.|.+-|||.+.+-- =+...-+.-.++++++ ...+..+.++..=--..++.-.|++ ++++-...-+.
T Consensus 403 idD~GWGCAYRSlQTIcSWFilqGYT~~pIPtHrEiQqaLvdi~DKpA~FVGSrQWIGStEis~vLn~ll~~~skil~v~ 482 (577)
T KOG2433|consen 403 IDDSGWGCAYRSLQTICSWFILQGYTDKPIPTHREIQQALVDIQDKPAKFVGSRQWIGSTEISFVLNELLKLESKILAVN 482 (577)
T ss_pred cccCCcchhhHhHHHHHHHHHHcCccCCCCCcHHHHHHHHHhccCcccceecccceecchhHHHHHHHHhccceEEEEec
Confidence 46788999887741 1222222333445443 4556666666655556677777777 58988999999
Q ss_pred CCCChHHHHHHHHHHhCCCCCccEEEECC
Q 033109 69 EDPKGKDMEKALMRLLGTSPAVPVVFIGG 97 (127)
Q Consensus 69 ~~~~~~~~~~~l~~~~g~~~~vP~ifv~g 97 (127)
...+-.+...+|+..... ...|+..=+|
T Consensus 483 sGaEva~~~rELA~HFqt-~GTPVMIGGg 510 (577)
T KOG2433|consen 483 SGAEVAERVRELARHFQT-SGTPVMIGGG 510 (577)
T ss_pred cccHHHHHHHHHHHHhhc-cCCcEEEccc
Confidence 888877777788887775 4678765444
No 346
>PRK04016 DNA-directed RNA polymerase subunit N; Provisional
Probab=40.13 E-value=26 Score=20.60 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=25.7
Q ss_pred ccEE-EECCEEEee-cHHHHHhhHc-CCcHHHHHhcCccc
Q 033109 90 VPVV-FIGGKLVGS-MDRVMASHIN-GTLVPLLKEAGALW 126 (127)
Q Consensus 90 vP~i-fv~g~~igG-~~~~~~~~~~-g~L~~~l~~~g~~~ 126 (127)
+|+- |-.|+.||. +++.....++ .+..+.|.+.|+.|
T Consensus 3 iPvRCFTCGkvi~~~we~y~~~~~~g~~~~~vLd~Lg~~R 42 (62)
T PRK04016 3 IPVRCFTCGKVIAEKWEEFKERVEAGEDPGKVLDDLGVKR 42 (62)
T ss_pred CCeEecCCCCChHHHHHHHHHHHHcCCCHHHHHHHcCCcc
Confidence 4554 667888876 3455555555 47788899999876
No 347
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=40.08 E-value=1.6e+02 Score=22.28 Aligned_cols=93 Identities=14% Similarity=0.280 Sum_probs=56.6
Q ss_pred HHHHHhc--CCcEEEEEeCC--ChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECC-EEEe
Q 033109 27 HIERLAS--ENAVVIFSISS--CCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGG-KLVG 101 (127)
Q Consensus 27 ~~~~~~~--~~~v~if~~~~--Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g-~~ig 101 (127)
-....++ ...++||.+|+ -|-=..++.+|++.|++...+ ...+-.. ..++|.+ . .+=+|.+.. -.||
T Consensus 51 ~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI--~D~p~~K-~~d~l~~-~----g~GYIivk~DpMIG 122 (277)
T PRK00994 51 VVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVI--GDAPGKK-VKDAMEE-Q----GLGYIIVKADPMIG 122 (277)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEE--cCCCccc-hHHHHHh-c----CCcEEEEecCcccc
Confidence 3444433 55688888875 888899999999999976544 3223221 1234543 2 344666654 3455
Q ss_pred ecHHHHHh----hHcCCcHHHHHhcCcccC
Q 033109 102 SMDRVMAS----HINGTLVPLLKEAGALWL 127 (127)
Q Consensus 102 G~~~~~~~----~~~g~L~~~l~~~g~~~~ 127 (127)
.-.++.+- .=|+.+-+.|...|+.|+
T Consensus 123 ArREFLDP~EMa~fNaD~~kVLa~tG~~Rl 152 (277)
T PRK00994 123 ARREFLDPVEMALFNADVLKVLAGTGAVRL 152 (277)
T ss_pred chhhccCHHHHHHhhhhHHHHHHhhhHHHH
Confidence 43333322 237788888888888764
No 348
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=39.16 E-value=40 Score=17.95 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=17.6
Q ss_pred EECCEEEeec--HHHHHhhHcCCcHH
Q 033109 94 FIGGKLVGSM--DRVMASHINGTLVP 117 (127)
Q Consensus 94 fv~g~~igG~--~~~~~~~~~g~L~~ 117 (127)
..||+..|=+ ++++++..+|.|..
T Consensus 5 ~~~g~~~GP~s~~el~~l~~~g~i~~ 30 (45)
T PF14237_consen 5 ARNGQQQGPFSLEELRQLISSGEIDP 30 (45)
T ss_pred eCCCeEECCcCHHHHHHHHHcCCCCC
Confidence 3578888844 58888888887753
No 349
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=39.12 E-value=75 Score=18.97 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=23.8
Q ss_pred HHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCCC
Q 033109 26 EHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVN 61 (127)
Q Consensus 26 ~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~ 61 (127)
+.+..+-...+|++|+. .+..+..+...|++.|..
T Consensus 48 ~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 48 DWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 33344335667888877 667777788888888864
No 350
>PLN02263 serine decarboxylase
Probab=38.78 E-value=2e+02 Score=23.79 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=47.6
Q ss_pred EEEEeCCChhHHHHHHHHHhcCCCcEEEEecCC--CChHHHHHHHHHHhCCCCCccEEEE---CCEEEeecHHHHHhhHc
Q 033109 38 VIFSISSCCMCHAVKRLFCGMGVNPTVYELDED--PKGKDMEKALMRLLGTSPAVPVVFI---GGKLVGSMDRVMASHIN 112 (127)
Q Consensus 38 ~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~--~~~~~~~~~l~~~~g~~~~vP~ifv---~g~~igG~~~~~~~~~~ 112 (127)
++|....-.+|.. +..+=+|++...+.++.+ -+...+++.+.+ . ...|.+.+ +-...|.+|++.+
T Consensus 180 vvy~S~~aH~Sv~--KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~--d--~~~P~iVvataGTT~~GAiDpi~e---- 249 (470)
T PLN02263 180 ILYASRESHYSVF--KAARMYRMECVKVDTLVSGEIDCADFKAKLLA--N--KDKPAIINVNIGTTVKGAVDDLDL---- 249 (470)
T ss_pred EEEEcCCccHHHH--HHHHhcCCcceEeccCCCCcCcHHHHHHHHHh--C--CCCcEEEEEEecCCCCcCCCCHHH----
Confidence 5677777777754 445557787777777653 344455555533 1 23577764 6678899998866
Q ss_pred CCcHHHHHhcCc
Q 033109 113 GTLVPLLKEAGA 124 (127)
Q Consensus 113 g~L~~~l~~~g~ 124 (127)
+.+++++.|+
T Consensus 250 --Ia~i~~~~g~ 259 (470)
T PLN02263 250 --VIKTLEECGF 259 (470)
T ss_pred --HHHHHHHcCC
Confidence 5666666665
No 351
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=38.51 E-value=1.9e+02 Score=22.60 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=36.9
Q ss_pred HHHHHHhc--CCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHH
Q 033109 26 EHIERLAS--ENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALM 81 (127)
Q Consensus 26 ~~~~~~~~--~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~ 81 (127)
+.+-+.++ ..++.|.+.+....-.++...|++.++.+..+++..++....+.+.+.
T Consensus 12 ~~l~~~l~~~~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~ 69 (374)
T cd08183 12 KELPALAAELGRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVA 69 (374)
T ss_pred HHHHHHHHHcCCcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHH
Confidence 34444333 357777776655566778888999999988888766666555555543
No 352
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=38.34 E-value=54 Score=24.15 Aligned_cols=20 Identities=15% Similarity=0.105 Sum_probs=17.0
Q ss_pred CCChhHHHHHHHHHhcCCCc
Q 033109 43 SSCCMCHAVKRLFCGMGVNP 62 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~~~i~~ 62 (127)
..||.++.+++.|++.++..
T Consensus 154 ~~~pla~~~R~~Lrk~~~~~ 173 (231)
T cd00755 154 SGDPLARKVRKRLRKRGIFF 173 (231)
T ss_pred ccCcHHHHHHHHHHHcCCCC
Confidence 46999999999999988863
No 353
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=37.80 E-value=87 Score=22.54 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecH--HHHHhh
Q 033109 59 GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMD--RVMASH 110 (127)
Q Consensus 59 ~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~--~~~~~~ 110 (127)
++.++.+++|-.+-...+.+.+ ..++.. .+=.|+.+|--+|||. |+..++
T Consensus 41 gv~~~~i~vDG~D~T~~i~~~v-~~~~~~-~~rvVlLdGIt~aGFNivDi~~l~ 92 (185)
T COG1628 41 GVAFSLITVDGLDVTDAISDMV-NRSKRR-DLRVVLLDGITFAGFNIVDIEALY 92 (185)
T ss_pred eeEEEEEEecCchHHHHHHHHH-HHhhcc-cccEEEECCeeeccceEecHHHHH
Confidence 4557778888766655544433 344543 3788899999999988 666665
No 354
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=37.10 E-value=49 Score=19.66 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=15.7
Q ss_pred CCCCCccEEEECCEEEeecH
Q 033109 85 GTSPAVPVVFIGGKLVGSMD 104 (127)
Q Consensus 85 g~~~~vP~ifv~g~~igG~~ 104 (127)
|.-..-|.+.|+|++++..+
T Consensus 42 G~C~~gP~v~V~~~~~~~~t 61 (72)
T cd03082 42 GRCERAPAALVGQRPVDGAT 61 (72)
T ss_pred CccCCCCeEEECCEEeCCcC
Confidence 44456899999999997665
No 355
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=36.88 E-value=42 Score=27.48 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=23.5
Q ss_pred CCHHHHHHHHhc--CCcE--EEEEeCCChhHHHHHHHHHhc
Q 033109 22 GDPLEHIERLAS--ENAV--VIFSISSCCMCHAVKRLFCGM 58 (127)
Q Consensus 22 ~~~~~~~~~~~~--~~~v--~if~~~~Cp~C~~~k~~L~~~ 58 (127)
.+..+.+++++. .++| ++|.. .|++|..++.+|++.
T Consensus 4 ~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 4 QSLLAQLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEI 43 (515)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHH
Confidence 344445555443 3344 44655 799999999999876
No 356
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=36.51 E-value=1.5e+02 Score=20.94 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=40.1
Q ss_pred CCcEEEEEeC---CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 34 ENAVVIFSIS---SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 34 ~~~v~if~~~---~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
..+|.+..+. .+.++....+.|+++|.....+.+....+..++.+.|. ..-.||+.| |....+.+..
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~-------~ad~I~~~G---G~~~~~~~~l 98 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLL-------EADGIFVGG---GNQLRLLSVL 98 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHh-------hCCEEEEcC---CcHHHHHHHH
Confidence 4455555443 36788999999999998877666543333334333332 245677766 3334444444
Q ss_pred HcC
Q 033109 111 ING 113 (127)
Q Consensus 111 ~~g 113 (127)
++-
T Consensus 99 ~~t 101 (210)
T cd03129 99 RET 101 (210)
T ss_pred HhC
Confidence 443
No 357
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=36.37 E-value=98 Score=20.00 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=33.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHH
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKD 75 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~ 75 (127)
+|++++.++|.-..-++.+.+.++.++..+.+..+.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccccc
Confidence 4789999999999999999999998888888887766554
No 358
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=36.37 E-value=1.5e+02 Score=23.42 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=35.3
Q ss_pred CChh---HHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC
Q 033109 44 SCCM---CHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG 96 (127)
Q Consensus 44 ~Cp~---C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~ 96 (127)
.||+ |+.++...+.++|+++.++....--..-+...|..+-..++..|-|.-|
T Consensus 49 ~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN 104 (377)
T KOG2805|consen 49 QCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFSPFLEEYENGRTPNPDILCN 104 (377)
T ss_pred CCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 3775 6789999999999999998875433333444454443334567777544
No 359
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=36.04 E-value=28 Score=28.15 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCCcEEEEecC--------CCChHHHHHHHHHHhCCCCCcc-------EEEECCEEEeecHHHHHhhHcCC
Q 033109 50 AVKRLFCGMGVNPTVYELDE--------DPKGKDMEKALMRLLGTSPAVP-------VVFIGGKLVGSMDRVMASHINGT 114 (127)
Q Consensus 50 ~~k~~L~~~~i~~~~v~id~--------~~~~~~~~~~l~~~~g~~~~vP-------~ifv~g~~igG~~~~~~~~~~g~ 114 (127)
.+..+-.+.|++|.++-+.. .|..+..+...+...|. ++ .+.||+..+.|. ..++
T Consensus 305 aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~---l~~~~~GKrvvlVDDSIVRGt-------Ts~~ 374 (474)
T KOG0572|consen 305 AALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGP---LRQNFEGKRVVLVDDSIVRGT-------TSSP 374 (474)
T ss_pred HHHHHHHHhCCchhhhhhhcccccceecCccHHHHHhhhhhhccc---chhhcCCceEEEEecceeccC-------chHH
Confidence 45566677889886654322 23333333344444441 33 345565555554 4567
Q ss_pred cHHHHHhcCcccC
Q 033109 115 LVPLLKEAGALWL 127 (127)
Q Consensus 115 L~~~l~~~g~~~~ 127 (127)
+-++|+++|++-|
T Consensus 375 IVkmlreaGAkeV 387 (474)
T KOG0572|consen 375 IVKMLREAGAKEV 387 (474)
T ss_pred HHHHHHHcCCcEE
Confidence 8899999998754
No 360
>PRK10670 hypothetical protein; Provisional
Probab=36.00 E-value=72 Score=21.94 Aligned_cols=46 Identities=15% Similarity=0.298 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCC--CCCccEEEE
Q 033109 50 AVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGT--SPAVPVVFI 95 (127)
Q Consensus 50 ~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~--~~~vP~ifv 95 (127)
.+.++|++.+++|+..+++..+......+++.+..|. ...+-++++
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~ 50 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLV 50 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEE
Confidence 4678999999999997776544321111244555554 123455554
No 361
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=35.42 E-value=28 Score=25.70 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=14.7
Q ss_pred CCcEEEEEeCCChhHHHH
Q 033109 34 ENAVVIFSISSCCMCHAV 51 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~ 51 (127)
.-.|++|+-+-||+|.+.
T Consensus 40 ~v~ItlyyEaLCPdc~~F 57 (220)
T KOG3160|consen 40 KVNITLYYEALCPDCSKF 57 (220)
T ss_pred eeEEEEEEEecCccHHHH
Confidence 346889999999999743
No 362
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=35.25 E-value=1.3e+02 Score=19.71 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=33.9
Q ss_pred CcEEEEEeCCChhHHHHHHHH---HhcCCCcEEEEecCCCChHHHHHHHHHHhC
Q 033109 35 NAVVIFSISSCCMCHAVKRLF---CGMGVNPTVYELDEDPKGKDMEKALMRLLG 85 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L---~~~~i~~~~v~id~~~~~~~~~~~l~~~~g 85 (127)
..|.+|....|..-..++.++ .+-|++|+.+.+....+...+-..-...++
T Consensus 3 Pai~i~~~~~~~~~~~lrev~aGIEEEGip~~~~~~~~~~d~~~lA~~AA~~S~ 56 (112)
T PF02288_consen 3 PAIGIYVSKTIEGSDVLREVLAGIEEEGIPYRVVRVSDTSDVAFLAYQAARLSR 56 (112)
T ss_dssp TTECCCEECTTTCHHHHHHHHHHHHCTT-EEEEEEECSSSSHHHHHHHHHHHST
T ss_pred CEEEEEecCCCcchhHHHHHHhHhcccCCCeEEEeecCcccHHHHHHHHhhccC
Confidence 457788888888866667776 577999999877777776554333334443
No 363
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.23 E-value=51 Score=26.26 Aligned_cols=48 Identities=4% Similarity=0.014 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEE
Q 033109 18 GALGGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTVY 65 (127)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v 65 (127)
-...+.+...+.+.++..-.+==..+.|+.|++..++|++.||..+..
T Consensus 154 ~id~~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~ 201 (431)
T COG4408 154 YIDAEQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPC 201 (431)
T ss_pred eecccCcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceEEc
Confidence 334445555555555443222223467999999999999999976543
No 364
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.93 E-value=18 Score=27.72 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=7.8
Q ss_pred eCCChhHHHH
Q 033109 42 ISSCCMCHAV 51 (127)
Q Consensus 42 ~~~Cp~C~~~ 51 (127)
++.||||++-
T Consensus 270 kqtCPYCKek 279 (328)
T KOG1734|consen 270 KQTCPYCKEK 279 (328)
T ss_pred CCCCchHHHH
Confidence 3689999864
No 365
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=34.89 E-value=23 Score=20.52 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=18.1
Q ss_pred HHHHhcCCcEEEEEe------------CCChhHHHHHHHH
Q 033109 28 IERLASENAVVIFSI------------SSCCMCHAVKRLF 55 (127)
Q Consensus 28 ~~~~~~~~~v~if~~------------~~Cp~C~~~k~~L 55 (127)
.+.++...+|+-... |-||.|+++..-|
T Consensus 18 ~esav~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 18 AESAVMGTPVVALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred HHHHhcCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 344556667665443 5699999886654
No 366
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=34.45 E-value=89 Score=19.63 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=39.4
Q ss_pred EEEEEeCCChhHHHHHHHH----Hhc-C--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-----CCEEEeecH
Q 033109 37 VVIFSISSCCMCHAVKRLF----CGM-G--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-----GGKLVGSMD 104 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L----~~~-~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-----~g~~igG~~ 104 (127)
..+|....-|.+.++.+-+ ++. + +..+++||..+|+ +++.... -..|++.- --+.||.++
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~-------lAE~~~I-vATPtLIK~~P~P~rriiGdls 77 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ-------LAEEDKI-LATPTLSKILPPPVRKIIGDLS 77 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-------HHhHCCE-EEecHHhhcCCCCcceeecccc
Confidence 4578888888887654444 432 2 3346777777775 4444454 35677542 236788888
Q ss_pred HHHHh
Q 033109 105 RVMAS 109 (127)
Q Consensus 105 ~~~~~ 109 (127)
+....
T Consensus 78 ~~~~v 82 (87)
T TIGR02654 78 DRERV 82 (87)
T ss_pred chHHH
Confidence 76543
No 367
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=33.87 E-value=26 Score=26.36 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=18.7
Q ss_pred HhcCCcEEE--EEeCCChhHHHHH----HHHHhcCC
Q 033109 31 LASENAVVI--FSISSCCMCHAVK----RLFCGMGV 60 (127)
Q Consensus 31 ~~~~~~v~i--f~~~~Cp~C~~~k----~~L~~~~i 60 (127)
+..++++.| .+..+||+|...+ -.|.++|-
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 445555443 4457899998543 45677764
No 368
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=32.91 E-value=2e+02 Score=22.73 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=16.2
Q ss_pred EEEEEeCCChhHH----HHHHHHHhcCCCcEEEEecC
Q 033109 37 VVIFSISSCCMCH----AVKRLFCGMGVNPTVYELDE 69 (127)
Q Consensus 37 v~if~~~~Cp~C~----~~k~~L~~~~i~~~~v~id~ 69 (127)
|+.+....|..-. .+++.|++.||++-.+|++.
T Consensus 325 VI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 325 VIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred EEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecC
Confidence 4444444444332 34455555566655555554
No 369
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=32.82 E-value=42 Score=21.64 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=12.8
Q ss_pred CccEEEECCEEEeecH
Q 033109 89 AVPVVFIGGKLVGSMD 104 (127)
Q Consensus 89 ~vP~ifv~g~~igG~~ 104 (127)
..=++||||.++|..-
T Consensus 63 ~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 63 FRASVWVNGWFLGSYW 78 (111)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred eEEEEEECCEEeeeec
Confidence 3458999999999754
No 370
>PRK09301 circadian clock protein KaiB; Provisional
Probab=32.66 E-value=94 Score=20.18 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=40.4
Q ss_pred EEEEEeCCChhHHHHHHHH----Hhc-C--CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEE-----CCEEEeecH
Q 033109 37 VVIFSISSCCMCHAVKRLF----CGM-G--VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFI-----GGKLVGSMD 104 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L----~~~-~--i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv-----~g~~igG~~ 104 (127)
+.+|....-|...++.+-+ ++. + +..+++||..+|+ +++.... -..|++.- --+.||.++
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe-------lAE~~~I-vATPTLIK~~P~P~rriiGDls 80 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ-------LAEEDKI-LATPTLAKILPPPVRKIIGDLS 80 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-------HHhHCCe-EEecHHhhcCCCCcceeecccc
Confidence 5678888888887665444 332 2 3346777777775 4444554 35677542 236889988
Q ss_pred HHHHh
Q 033109 105 RVMAS 109 (127)
Q Consensus 105 ~~~~~ 109 (127)
+..+.
T Consensus 81 d~~kV 85 (103)
T PRK09301 81 DREKV 85 (103)
T ss_pred cHHHH
Confidence 76554
No 371
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=32.51 E-value=1.4e+02 Score=19.17 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhcCCCcEEEEecC-----------------CCChHHHHHHHHHHhCCCCCccEEEECCEEEe
Q 033109 46 CMCHAVKRLFCGMGVNPTVYELDE-----------------DPKGKDMEKALMRLLGTSPAVPVVFIGGKLVG 101 (127)
Q Consensus 46 p~C~~~k~~L~~~~i~~~~v~id~-----------------~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ig 101 (127)
-...+.++++++.|++++..-... .|.-+...+.+++.+.. ..+|...|+....|
T Consensus 16 lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~-~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAK-VGKPVVQIPPQAYI 87 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhh-cCCCEEEeCHHHcC
Confidence 445677778888888764422211 12233445667777764 47999999987766
No 372
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=32.19 E-value=27 Score=25.35 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=41.5
Q ss_pred cEEEEEe-----CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEE--EeecHHHHH
Q 033109 36 AVVIFSI-----SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKL--VGSMDRVMA 108 (127)
Q Consensus 36 ~v~if~~-----~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~--igG~~~~~~ 108 (127)
.-.||.+ =.|++|.....+=.+.+..+....++ ++.+.++.. +.. ..=+++-||+. ..+..++.+
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~------~I~~~i~~~-~~~-~~~V~lTGGEP~~~~~l~~Ll~ 93 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSAD------EILADIKSL-GYK-ARGVSLTGGEPLLQPNLLELLE 93 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHH------HHHHHHHhc-CCC-cceEEEeCCcCCCcccHHHHHH
Confidence 3456666 25999987666433333333333332 344445432 211 12245668887 235666666
Q ss_pred hhHcCCcHHHHHhcCccc
Q 033109 109 SHINGTLVPLLKEAGALW 126 (127)
Q Consensus 109 ~~~~g~L~~~l~~~g~~~ 126 (127)
+.+...++-.|+..|-++
T Consensus 94 ~l~~~g~~~~lETngti~ 111 (212)
T COG0602 94 LLKRLGFRIALETNGTIP 111 (212)
T ss_pred HHHhCCceEEecCCCCcc
Confidence 655444444454445443
No 373
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.87 E-value=1e+02 Score=22.91 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=47.6
Q ss_pred eCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcC--CcHHHH
Q 033109 42 ISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHING--TLVPLL 119 (127)
Q Consensus 42 ~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g--~L~~~l 119 (127)
.+....|-.++.+|+=.+.+|.++--+-.+ ..+- | ..+|.+-+|...+.+|..|++..+.. .|...+
T Consensus 31 l~d~ascLAVqtfLrMcnLPf~v~~~~Nae--------fmSP-~--G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l 99 (257)
T KOG3027|consen 31 LPDNASCLAVQTFLRMCNLPFNVRQRANAE--------FMSP-G--GKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL 99 (257)
T ss_pred cccchhHHHHHHHHHHcCCCceeeecCCcc--------ccCC-C--CCCceeeecchhhhhhhHHHHHHHHhccchhhhh
Confidence 356788999999999999998776543221 1111 2 25999999999999999998875533 444443
No 374
>KOG4749 consensus Inositol polyphosphate kinase [Signal transduction mechanisms]
Probab=31.79 E-value=1.3e+02 Score=23.83 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHHhcCCC----cEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEE-eec
Q 033109 44 SCCMCHAVKRLFCGMGVN----PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLV-GSM 103 (127)
Q Consensus 44 ~Cp~C~~~k~~L~~~~i~----~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~i-gG~ 103 (127)
-|-+|..-..-+.+..+. |--.|+-.... ..++++++.++.....==.||+||..| ||+
T Consensus 156 ~cr~cm~QvlK~~~~~~sqisey~PLDLfSG~k-~rm~~AikaL~~~pqnnlrvF~nG~lv~gg~ 219 (375)
T KOG4749|consen 156 ICRFCMHQVLKLRENHISQISEYDPLDLFSGSK-ERMHKAIKALYSTPQNNLRVFLNGSLVFGGL 219 (375)
T ss_pred hhHHHHHHHHHHhhcchhhhhccCchhhccccH-HHHHHHHHHHhhccccceeEEeccceeeccc
Confidence 466776444444444332 33344444332 346777877654322234689999877 444
No 375
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=31.74 E-value=93 Score=20.33 Aligned_cols=61 Identities=10% Similarity=0.257 Sum_probs=33.8
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCCc-EEEEecCCCChHHHHHHHHH-HhCCCCCccEEEECC
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGMGVNP-TVYELDEDPKGKDMEKALMR-LLGTSPAVPVVFIGG 97 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~~i~~-~~v~id~~~~~~~~~~~l~~-~~g~~~~vP~ifv~g 97 (127)
..+|++.-+-.|++-.+++. ..+.|... ..++.+..+....+ .+.. .+....++|.+||..
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII~n~~~~~~~~~~--~m~~~~~~~~i~IP~v~Is~ 96 (118)
T cd02127 34 NGNIALIERGGCSFLTKAIN-AQKAGALAVIITDVNNDSDEYYV--EMIQDDSSRRADIPAAFLLG 96 (118)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCccccce--EecCCCCCCCceEEEEEecH
Confidence 46788888889999998877 45556553 44444332211110 0000 011123689999865
No 376
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=30.73 E-value=48 Score=18.13 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=11.5
Q ss_pred CCccEEEECCEEEe
Q 033109 88 PAVPVVFIGGKLVG 101 (127)
Q Consensus 88 ~~vP~ifv~g~~ig 101 (127)
..+..|||||+.+-
T Consensus 18 ~GI~~V~VNG~~vv 31 (48)
T PF07908_consen 18 EGIDYVFVNGQIVV 31 (48)
T ss_dssp BSEEEEEETTEEEE
T ss_pred CCEEEEEECCEEEE
Confidence 46889999998774
No 377
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=30.68 E-value=84 Score=20.45 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=38.9
Q ss_pred CCcEEEEEeCC---ChhHHHHHHHHH----hcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE--EECCEEEeecH
Q 033109 34 ENAVVIFSISS---CCMCHAVKRLFC----GMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV--FIGGKLVGSMD 104 (127)
Q Consensus 34 ~~~v~if~~~~---Cp~C~~~k~~L~----~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i--fv~g~~igG~~ 104 (127)
....++|.... +|-+..+--+|= ..+-.+.---+. + +...+|+..+|. ..+|.+ |-+|+++|...
T Consensus 26 ~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~---~~e~~L~~r~gv-~~~PaLvf~R~g~~lG~i~ 99 (107)
T PF07449_consen 26 PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--R---AAERALAARFGV-RRWPALVFFRDGRYLGAIE 99 (107)
T ss_dssp CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--H---HHHHHHHHHHT--TSSSEEEEEETTEEEEEEE
T ss_pred CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--c---hhHHHHHHHhCC-ccCCeEEEEECCEEEEEec
Confidence 34456666654 444444444443 344444433344 2 234478999997 479987 45899998766
Q ss_pred HHHH
Q 033109 105 RVMA 108 (127)
Q Consensus 105 ~~~~ 108 (127)
.+++
T Consensus 100 gi~d 103 (107)
T PF07449_consen 100 GIRD 103 (107)
T ss_dssp SSST
T ss_pred Ceec
Confidence 5543
No 378
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=30.52 E-value=2.2e+02 Score=22.06 Aligned_cols=44 Identities=9% Similarity=-0.027 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCCCcEE
Q 033109 21 GGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTV 64 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~ 64 (127)
+=.....+.++++..-+.||+-..+..+..+..+.++++||+-.
T Consensus 43 sf~~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~ 86 (370)
T cd06389 43 SFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFIT 86 (370)
T ss_pred hHHHHHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeee
Confidence 34455666777778778889888888889999999999988754
No 379
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=30.40 E-value=51 Score=26.52 Aligned_cols=11 Identities=45% Similarity=0.902 Sum_probs=7.7
Q ss_pred CCccEEEECCE
Q 033109 88 PAVPVVFIGGK 98 (127)
Q Consensus 88 ~~vP~ifv~g~ 98 (127)
..+|+|||||.
T Consensus 74 APVlTIFIGGN 84 (456)
T KOG2863|consen 74 APVLTIFIGGN 84 (456)
T ss_pred CceeEEEecCc
Confidence 45777777775
No 380
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=30.24 E-value=1.3e+02 Score=19.98 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCCcEEEEecCC
Q 033109 49 HAVKRLFCGMGVNPTVYELDED 70 (127)
Q Consensus 49 ~~~k~~L~~~~i~~~~v~id~~ 70 (127)
.++..+|++.+++|+.++....
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~ 23 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPES 23 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCC
Confidence 4678899999999998888853
No 381
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=29.69 E-value=1.2e+02 Score=19.60 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=25.8
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033109 33 SENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDE 69 (127)
Q Consensus 33 ~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~ 69 (127)
...+|++|+......+..+-.+|+.+|.+ .+.++-
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~G 119 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLEG 119 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeCC
Confidence 45679999976667777777889989984 455553
No 382
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.25 E-value=54 Score=19.98 Aligned_cols=22 Identities=5% Similarity=0.039 Sum_probs=18.3
Q ss_pred CCChhHHHHHHHHHhcCCCcEE
Q 033109 43 SSCCMCHAVKRLFCGMGVNPTV 64 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~~~i~~~~ 64 (127)
..=.||+++..+|.++++.|+-
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh 34 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEH 34 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEee
Confidence 3457899999999999998754
No 383
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=29.24 E-value=1.3e+02 Score=17.88 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=17.2
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCC
Q 033109 33 SENAVVIFSISSCCMCHAVKRLFCGMGV 60 (127)
Q Consensus 33 ~~~~v~if~~~~Cp~C~~~k~~L~~~~i 60 (127)
...+|++|+.. ...+..+-..|++.|.
T Consensus 50 ~~~~vvl~c~~-g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 50 KDKEIIVYCAV-GLRGYIAARILTQNGF 76 (90)
T ss_pred CCCcEEEEcCC-ChhHHHHHHHHHHCCC
Confidence 34567777654 3445566667788877
No 384
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=29.15 E-value=1.5e+02 Score=22.45 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=32.7
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEE
Q 033109 39 IFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVV 93 (127)
Q Consensus 39 if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~i 93 (127)
-|-.+|-..|+.+..+++.-|.....++.... ...+..+++.. +++|++
T Consensus 110 tyeS~~sda~knAv~vmk~~g~~~vK~EgGs~----~~~~~~~~l~e--rgipV~ 158 (306)
T KOG2949|consen 110 TYESSWSDAVKNAVRVMKEGGMDAVKLEGGSN----SRITAAKRLVE--RGIPVM 158 (306)
T ss_pred cccccHHHHHHHHHHHHHhcCCceEEEccCcH----HHHHHHHHHHH--cCCcee
Confidence 35567899999999999998887777776652 23333444443 246654
No 385
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=29.07 E-value=2.8e+02 Score=21.59 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHhcCCcEEEEEeCCChhHHHHHHHHHhcCCCcEE
Q 033109 21 GGDPLEHIERLASENAVVIFSISSCCMCHAVKRLFCGMGVNPTV 64 (127)
Q Consensus 21 ~~~~~~~~~~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~ 64 (127)
+..+...+.++++..-+.||+..+++.+..+..++.+.++++..
T Consensus 48 ~~~a~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is 91 (363)
T cd06381 48 HFDAVQEACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLF 91 (363)
T ss_pred hHHHHHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEE
Confidence 34556667778888555788889999999999999999988643
No 386
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=28.94 E-value=15 Score=24.68 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=45.2
Q ss_pred HHHHhcCCcEEE-EEeCCChhHHHH---HHHHHh-c-CCC---cEEEEecCCCChHHHHHHHHHHhCC-CCCccEEEECC
Q 033109 28 IERLASENAVVI-FSISSCCMCHAV---KRLFCG-M-GVN---PTVYELDEDPKGKDMEKALMRLLGT-SPAVPVVFIGG 97 (127)
Q Consensus 28 ~~~~~~~~~v~i-f~~~~Cp~C~~~---k~~L~~-~-~i~---~~~v~id~~~~~~~~~~~l~~~~g~-~~~vP~ifv~g 97 (127)
+.+.+...+.++ =....-||-.+- +++-++ . ..+ ..+|-|...-+..+ .+|.+.++. ...+|.+++
T Consensus 14 FdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N--~~Laery~i~ke~fPv~~L-- 89 (126)
T PF07912_consen 14 FDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKEN--MELAERYKIDKEDFPVIYL-- 89 (126)
T ss_dssp HHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CC--HHHHHHTT-SCCC-SEEEE--
T ss_pred hhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhH--HHHHHHhCCCcccCCEEEE--
Confidence 677787777554 234455665432 222212 1 121 45555544322222 368888885 346899853
Q ss_pred EEEeecHHHHHh-----hHcCCcHHHHHhcCcccC
Q 033109 98 KLVGSMDRVMAS-----HINGTLVPLLKEAGALWL 127 (127)
Q Consensus 98 ~~igG~~~~~~~-----~~~g~L~~~l~~~g~~~~ 127 (127)
+.||.++-+.+ .+-+.|+.+++..+.+|+
T Consensus 90 -F~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~yi 123 (126)
T PF07912_consen 90 -FVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLYI 123 (126)
T ss_dssp -EESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--T
T ss_pred -ecCCCCCCccCCccCCccHHHHHHHHHhCCCeee
Confidence 22333332222 334578899998877764
No 387
>PLN02790 transketolase
Probab=28.84 E-value=1.8e+02 Score=24.89 Aligned_cols=89 Identities=10% Similarity=-0.016 Sum_probs=52.1
Q ss_pred CcEEEE-EeCCChhHHHHHHHHHhcCCCcEEEEecCCCC-hHHHHHHHHHHhCCCCCccEEEECCEEEeecHHH------
Q 033109 35 NAVVIF-SISSCCMCHAVKRLFCGMGVNPTVYELDEDPK-GKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRV------ 106 (127)
Q Consensus 35 ~~v~if-~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~-~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~------ 106 (127)
.+|++. +.+-...|.++...|++.|+..+++++..-.- ..+...+..+..+. ..-+.|.|..-..+|+...
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~-~~~~vvtiE~~~~~G~~~~~~~~~~ 619 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPS-SVTARVSVEAGSTFGWEKYVGSKGK 619 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhcc-ccceEEEecCccchhHHHhcCCCce
Confidence 456554 34668889999999999999999999765321 12211122233432 2234555544334444332
Q ss_pred ----HHhhHcCCcHHHHHhcCc
Q 033109 107 ----MASHINGTLVPLLKEAGA 124 (127)
Q Consensus 107 ----~~~~~~g~L~~~l~~~g~ 124 (127)
...-..|..+++++..|+
T Consensus 620 ~igvd~Fg~sg~~~~l~~~~Gl 641 (654)
T PLN02790 620 VIGVDRFGASAPAGILYKEFGF 641 (654)
T ss_pred EEEeCCCcCcCCHHHHHHHhCC
Confidence 123446777777777775
No 388
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=28.82 E-value=2.4e+02 Score=20.82 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCcEEEEE-eC-----CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCE
Q 033109 25 LEHIERLASENAVVIFS-IS-----SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGK 98 (127)
Q Consensus 25 ~~~~~~~~~~~~v~if~-~~-----~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~ 98 (127)
...+.+.+...+-++|. +. .=.|..+.++.|+++|+....+++. ++ ..+.| .. .=.|||.|
T Consensus 21 ~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~--~d---~~~~l---~~----ad~I~v~G- 87 (233)
T PRK05282 21 LPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV--AD---PVAAI---EN----AEAIFVGG- 87 (233)
T ss_pred HHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc--hh---hHHHH---hc----CCEEEECC-
Confidence 34445554444444443 32 2347889999999999875555443 22 11123 22 22666655
Q ss_pred EEeecHHHHHhhHcCCcHHHHHh
Q 033109 99 LVGSMDRVMASHINGTLVPLLKE 121 (127)
Q Consensus 99 ~igG~~~~~~~~~~g~L~~~l~~ 121 (127)
|..-.+.+..+.-.|.+.|++
T Consensus 88 --Gnt~~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 88 --GNTFQLLKQLYERGLLAPIRE 108 (233)
T ss_pred --ccHHHHHHHHHHCCcHHHHHH
Confidence 222345555555567776664
No 389
>PF15616 TerY-C: TerY-C metal binding domain
Probab=28.63 E-value=16 Score=24.78 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=11.4
Q ss_pred EEEeCCChhHHHHHHH
Q 033109 39 IFSISSCCMCHAVKRL 54 (127)
Q Consensus 39 if~~~~Cp~C~~~k~~ 54 (127)
+...|+||+|-....+
T Consensus 74 L~g~PgCP~CGn~~~f 89 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAF 89 (131)
T ss_pred hcCCCCCCCCcChhcE
Confidence 4566999999765443
No 390
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=28.53 E-value=56 Score=19.59 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=13.6
Q ss_pred CChhHH-HHHHHHHhcCC
Q 033109 44 SCCMCH-AVKRLFCGMGV 60 (127)
Q Consensus 44 ~Cp~C~-~~k~~L~~~~i 60 (127)
=||.|+ .|++.+++.+|
T Consensus 17 PC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 17 PCPECRIHAKEAIQKNNI 34 (70)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 499997 67888888776
No 391
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=28.43 E-value=1.5e+02 Score=25.08 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=38.8
Q ss_pred HHHHHHhcCCcEEEEEe-CCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecH
Q 033109 26 EHIERLASENAVVIFSI-SSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMD 104 (127)
Q Consensus 26 ~~~~~~~~~~~v~if~~-~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~ 104 (127)
+++-++++..||.+.+. ..+..|+++...+.+..- ..+....+.+-|-...+. +++||..
T Consensus 250 aKlCQLLNT~PvKvlvg~r~e~~~k~ive~~e~~~~--------~~dakk~LvklLinl~~~-----------K~v~gIt 310 (557)
T PF01763_consen 250 AKLCQLLNTAPVKVLVGSRSEDNYKKIVEHMEKEDK--------ASDAKKRLVKLLINLSEM-----------KHVGGIT 310 (557)
T ss_pred HHHHHHhcCCCeEEEEecCCcccHHHHHHHHHhhcc--------CCCHHHHHHHHHHhcccC-----------cccCCch
Confidence 46778889999977555 456666666666632211 112233444444444443 4677777
Q ss_pred HHHHhhHc
Q 033109 105 RVMASHIN 112 (127)
Q Consensus 105 ~~~~~~~~ 112 (127)
|.++.+-+
T Consensus 311 D~Ve~fl~ 318 (557)
T PF01763_consen 311 DVVESFLQ 318 (557)
T ss_pred hhHHHHHH
Confidence 77666543
No 392
>PRK01415 hypothetical protein; Validated
Probab=28.22 E-value=98 Score=23.18 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=25.3
Q ss_pred HHhcCCcEEEEEeCCChhHHHHHHHHHhcCCC
Q 033109 30 RLASENAVVIFSISSCCMCHAVKRLFCGMGVN 61 (127)
Q Consensus 30 ~~~~~~~v~if~~~~Cp~C~~~k~~L~~~~i~ 61 (127)
+..+..+|++|++.+ .-|.++-.+|.+.|.+
T Consensus 167 ~~~k~k~Iv~yCtgG-iRs~kAa~~L~~~Gf~ 197 (247)
T PRK01415 167 ELLKGKKIAMVCTGG-IRCEKSTSLLKSIGYD 197 (247)
T ss_pred hhcCCCeEEEECCCC-hHHHHHHHHHHHcCCC
Confidence 344667899999766 7899999999999975
No 393
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=27.98 E-value=35 Score=27.10 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=27.7
Q ss_pred CChhHH-----HHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECC
Q 033109 44 SCCMCH-----AVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGG 97 (127)
Q Consensus 44 ~Cp~C~-----~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g 97 (127)
|||.-. .-+++|...+++|....+..........-... .....-.|.|+|.|
T Consensus 42 w~~~~~~~l~~~e~ril~~~~v~~~~~~v~i~~~~~iw~~~~~--~~~~~~~plVliHG 98 (365)
T KOG4409|consen 42 WCSTSRDQLKEAEKRILSSVPVPYSKKYVRIPNGIEIWTITVS--NESANKTPLVLIHG 98 (365)
T ss_pred cccchHHHHHHHHHhhhhhcCCCcceeeeecCCCceeEEEeec--ccccCCCcEEEEec
Confidence 787776 33566677788886655544322111000000 11123589999988
No 394
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=27.83 E-value=51 Score=19.01 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=9.6
Q ss_pred EEEECCEEEee
Q 033109 92 VVFIGGKLVGS 102 (127)
Q Consensus 92 ~ifv~g~~igG 102 (127)
.|||||+++|-
T Consensus 14 ~V~vdg~~~G~ 24 (71)
T PF08308_consen 14 EVYVDGKYIGT 24 (71)
T ss_pred EEEECCEEecc
Confidence 68999999983
No 395
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=27.60 E-value=44 Score=21.01 Aligned_cols=27 Identities=7% Similarity=-0.114 Sum_probs=20.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHhcCCCc
Q 033109 36 AVVIFSISSCCMCHAVKRLFCGMGVNP 62 (127)
Q Consensus 36 ~v~if~~~~Cp~C~~~k~~L~~~~i~~ 62 (127)
++..|..|...+-..+.+++++.|++|
T Consensus 96 ~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 96 PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 677788888888888889998888765
No 396
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=27.48 E-value=54 Score=21.17 Aligned_cols=16 Identities=31% Similarity=0.825 Sum_probs=13.0
Q ss_pred CCccEEEECCEEEeec
Q 033109 88 PAVPVVFIGGKLVGSM 103 (127)
Q Consensus 88 ~~vP~ifv~g~~igG~ 103 (127)
..-|.|+|||+.+|..
T Consensus 40 ~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 40 AVKPDVYVDGELIGEL 55 (117)
T ss_pred cccceEEECCEEEEEe
Confidence 3578999999999764
No 397
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=27.40 E-value=1.4e+02 Score=19.90 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCcEEEEecCCCCh
Q 033109 49 HAVKRLFCGMGVNPTVYELDEDPKG 73 (127)
Q Consensus 49 ~~~k~~L~~~~i~~~~v~id~~~~~ 73 (127)
.++..+|++.+++|+.++.......
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~ 26 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTS 26 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCH
Confidence 4678899999999999987654433
No 398
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=27.21 E-value=18 Score=19.69 Aligned_cols=6 Identities=33% Similarity=1.159 Sum_probs=3.9
Q ss_pred ChhHHH
Q 033109 45 CCMCHA 50 (127)
Q Consensus 45 Cp~C~~ 50 (127)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 777753
No 399
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=26.63 E-value=2.5e+02 Score=20.83 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=42.8
Q ss_pred CCHHHHHHHHhcCC--cEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCE
Q 033109 22 GDPLEHIERLASEN--AVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGK 98 (127)
Q Consensus 22 ~~~~~~~~~~~~~~--~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~ 98 (127)
.+....+++.+..+ .++++.+...+.+.+..+.|.+.++.=-.+- ....+... +..... . .+|.|+++..
T Consensus 17 ~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~-s~~~~~~~----l~~~~~-~-~iPvV~~~~~ 88 (279)
T PF00532_consen 17 AEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILA-SSENDDEE----LRRLIK-S-GIPVVLIDRY 88 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEE-SSSCTCHH----HHHHHH-T-TSEEEEESS-
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEe-cccCChHH----HHHHHH-c-CCCEEEEEec
Confidence 34455566666555 4667778888999888888888888744433 33333233 333333 2 5888888764
No 400
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=26.60 E-value=2.2e+02 Score=24.35 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=44.1
Q ss_pred cEEEEEeCCC---hhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhh
Q 033109 36 AVVIFSISSC---CMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASH 110 (127)
Q Consensus 36 ~v~if~~~~C---p~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~ 110 (127)
+|.|++...| -.|+-...+|+.-.|+|..+.|....+-... ..+.... .-=.|+|| .||.-++.++.
T Consensus 1 ~Vli~v~~dvDalcA~kiL~~Llk~d~I~~~l~PV~gy~el~~~---~~~~~~~--~~~vilIn---cGa~~dl~~~l 70 (622)
T PF02724_consen 1 SVLILVALDVDALCACKILTSLLKSDNIQYSLVPVSGYSELERA---YEELDED--IKSVILIN---CGATVDLEEFL 70 (622)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHHhcCCCeeEEEeCCHHHHHHH---HHHHhhh--hceEEEEe---cCchhhHHHHh
Confidence 3566666543 2467778889999999999999987664443 3333222 11267777 57877777654
No 401
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=26.42 E-value=1.9e+02 Score=18.76 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=36.3
Q ss_pred CcEEEEEeCCCh----hHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE
Q 033109 35 NAVVIFSISSCC----MCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF 94 (127)
Q Consensus 35 ~~v~if~~~~Cp----~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if 94 (127)
.++.++.-..-| |=+..++..++.|+.++.+.+..+....++.+.+.++... ..+==|+
T Consensus 30 P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D-~~V~GIl 92 (117)
T PF00763_consen 30 PKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED-PSVHGIL 92 (117)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH--TT-SEEE
T ss_pred cEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC-CCCCEEE
Confidence 345544444444 4455667778899999999998888888888888887664 3443333
No 402
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=26.20 E-value=96 Score=20.47 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=18.5
Q ss_pred hCCCCCccEEEECCEEE-eecHHHHHh
Q 033109 84 LGTSPAVPVVFIGGKLV-GSMDRVMAS 109 (127)
Q Consensus 84 ~g~~~~vP~ifv~g~~i-gG~~~~~~~ 109 (127)
+|. +.+|-|.+|++++ =|..|+..+
T Consensus 79 lgi-~k~PAVVfD~~~VVYG~tDV~~A 104 (114)
T PF07511_consen 79 LGI-TKYPAVVFDDRYVVYGETDVARA 104 (114)
T ss_pred hCc-cccCEEEEcCCeEEecccHHHHH
Confidence 466 5799999999866 477776554
No 403
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=26.02 E-value=2.5e+02 Score=20.05 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=51.1
Q ss_pred CHHHHHHHHhcCCc-EEEEEeC---CChhHHHHHHHHHhc-CCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECC
Q 033109 23 DPLEHIERLASENA-VVIFSIS---SCCMCHAVKRLFCGM-GVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGG 97 (127)
Q Consensus 23 ~~~~~~~~~~~~~~-v~if~~~---~Cp~C~~~k~~L~~~-~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g 97 (127)
...+.+.+..+..+ |.+..+. .=.+...+.+.|+++ |.....+++...++ ..+.|. ..=.||+.|
T Consensus 19 ~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~---~~~~l~-------~ad~I~l~G 88 (212)
T cd03146 19 AIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTED---PLDALL-------EADVIYVGG 88 (212)
T ss_pred HHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCccc---HHHHHh-------cCCEEEECC
Confidence 34444555543333 4443332 235677889999999 88777666544222 111232 234788877
Q ss_pred EEEeecHHHHHhhHcCCcHHHHHhc
Q 033109 98 KLVGSMDRVMASHINGTLVPLLKEA 122 (127)
Q Consensus 98 ~~igG~~~~~~~~~~g~L~~~l~~~ 122 (127)
|....+.+..++-.|.++|++.
T Consensus 89 ---G~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 89 ---GNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred ---chHHHHHHHHHHcCHHHHHHHH
Confidence 6666666666666788888764
No 404
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=25.86 E-value=1.1e+02 Score=19.56 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=28.5
Q ss_pred CCcEEEEE-eCCChhHHHHHHHHHhcCCCcEEEEecC
Q 033109 34 ENAVVIFS-ISSCCMCHAVKRLFCGMGVNPTVYELDE 69 (127)
Q Consensus 34 ~~~v~if~-~~~Cp~C~~~k~~L~~~~i~~~~v~id~ 69 (127)
...+++++ .+....|.++.+.|++.|++...+++..
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~ 45 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRT 45 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEE
Confidence 44666655 4678999999999999999998888754
No 405
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=25.82 E-value=62 Score=19.12 Aligned_cols=28 Identities=29% Similarity=0.555 Sum_probs=17.4
Q ss_pred CCccEEEECCEEEeecHHHHHhh--HcCCcHHHHHhc
Q 033109 88 PAVPVVFIGGKLVGSMDRVMASH--INGTLVPLLKEA 122 (127)
Q Consensus 88 ~~vP~ifv~g~~igG~~~~~~~~--~~g~L~~~l~~~ 122 (127)
..+|.| |||.| ++..+ ++-+|+++|+.+
T Consensus 16 ~~lP~I------IGGSD-Li~h~~~knseleeWl~~e 45 (65)
T PF08599_consen 16 GGLPHI------IGGSD-LIAHHAGKNSELEEWLRQE 45 (65)
T ss_pred CCCCee------ecchh-hhhccccccccHHHHHHHH
Confidence 367876 66654 44443 355888888754
No 406
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=25.29 E-value=1.5e+02 Score=18.63 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=17.2
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHhcCCC
Q 033109 34 ENAVVIFSISSCCMCHAVKRLFCGMGVN 61 (127)
Q Consensus 34 ~~~v~if~~~~Cp~C~~~k~~L~~~~i~ 61 (127)
..+|++|+..++.....+-..|+..|.+
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTLRYFGHE 106 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHcCCC
Confidence 4457777666555555556667777754
No 407
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=25.16 E-value=3.3e+02 Score=21.23 Aligned_cols=63 Identities=17% Similarity=0.330 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHhcC---CcEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCChHHHHHHHHHH
Q 033109 21 GGDPLEHIERLASE---NAVVIFSISS---CCMCHAVKRLFCGMGVNPTVYE-LDEDPKGKDMEKALMRL 83 (127)
Q Consensus 21 ~~~~~~~~~~~~~~---~~v~if~~~~---Cp~C~~~k~~L~~~~i~~~~v~-id~~~~~~~~~~~l~~~ 83 (127)
.....+++.+.+.. .++.|.+.+. -+...+++..|++.++.+..++ +..++....+.+.+...
T Consensus 10 G~g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~ 79 (376)
T cd08193 10 GAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAA 79 (376)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHH
Confidence 33445555554442 4666666553 4567889999999999877654 66677666666555443
No 408
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=24.95 E-value=1.8e+02 Score=18.10 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=20.2
Q ss_pred cCCcEEEEEeC-CChhHHHHHHHHHhcCCC
Q 033109 33 SENAVVIFSIS-SCCMCHAVKRLFCGMGVN 61 (127)
Q Consensus 33 ~~~~v~if~~~-~Cp~C~~~k~~L~~~~i~ 61 (127)
...+|++|+.. .|..-..+-..|.+.|.+
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 45678888765 365666666777888875
No 409
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=24.91 E-value=61 Score=23.08 Aligned_cols=91 Identities=10% Similarity=0.028 Sum_probs=48.4
Q ss_pred HHhcCCcEEEEEeC---------CChhHHHHHHHHHhcCCCcE-EEEecCCCChHHHHHHHHHHhCCCCCc--cEEEE-C
Q 033109 30 RLASENAVVIFSIS---------SCCMCHAVKRLFCGMGVNPT-VYELDEDPKGKDMEKALMRLLGTSPAV--PVVFI-G 96 (127)
Q Consensus 30 ~~~~~~~v~if~~~---------~Cp~C~~~k~~L~~~~i~~~-~v~id~~~~~~~~~~~l~~~~g~~~~v--P~ifv-~ 96 (127)
.-.....-.+|+.+ -||.|..--+.-+++...|. ..++.......+..++|..+|....++ +.... .
T Consensus 28 ~cCgk~~~~~Y~~~~Y~~~dv~~lCPwCIAdG~AA~kfdg~F~d~~~~~~~~~~~~~~~El~~RTPGy~sWQqe~Wl~hC 107 (176)
T PF03691_consen 28 DCCGKARGYYYTGPFYSEEDVEYLCPWCIADGSAAKKFDGEFQDDADLEGVGIDPEKLEELFHRTPGYSSWQQEYWLAHC 107 (176)
T ss_pred CCCCCCceeEecCCceecCCccccCHhHhcCcHhHHhcCeEeecchhcccccCCHHHHHHHHhcCCCCcccccchhhhhc
Confidence 33445555556553 49999977777777665542 233443323445556676665422233 22222 1
Q ss_pred C---EEEe--ecHHHHHhhHcCCcHHHHHhc
Q 033109 97 G---KLVG--SMDRVMASHINGTLVPLLKEA 122 (127)
Q Consensus 97 g---~~ig--G~~~~~~~~~~g~L~~~l~~~ 122 (127)
| .|+| |..||.++ .+.+++++++.
T Consensus 108 ~D~CaFlG~vg~~El~~~--~~~~~~~~~~~ 136 (176)
T PF03691_consen 108 DDYCAFLGYVGWEELKAM--PEELEEVLEDY 136 (176)
T ss_pred CCHHHhcCCCCHHHHHHH--HHHHHHHHHHH
Confidence 1 3444 66677666 35566666554
No 410
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=24.91 E-value=61 Score=21.06 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=13.9
Q ss_pred EEEEEeCCChhHHHHHHHHH
Q 033109 37 VVIFSISSCCMCHAVKRLFC 56 (127)
Q Consensus 37 v~if~~~~Cp~C~~~k~~L~ 56 (127)
..+--.+.||.|.+-+.-|.
T Consensus 26 ~k~H~~s~Cp~C~kkraeLa 45 (104)
T PF15379_consen 26 AKQHNSSQCPSCNKKRAELA 45 (104)
T ss_pred ccccCcccChHHHHHHHHHH
Confidence 34455688999998766554
No 411
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=24.74 E-value=2.9e+02 Score=23.04 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHhcCCcEEEEEeCCCh-----hHHHHHHHHHhc-----CCCcEEEEecCCCC
Q 033109 20 LGGDPLEHIERLASENAVVIFSISSCC-----MCHAVKRLFCGM-----GVNPTVYELDEDPK 72 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~if~~~~Cp-----~C~~~k~~L~~~-----~i~~~~v~id~~~~ 72 (127)
.++..++-++.+-++-.|.+|....-| +=.+++.+|+++ ++.++++|-..+++
T Consensus 35 LS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~ 97 (552)
T TIGR03521 35 LSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEED 97 (552)
T ss_pred cCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcch
Confidence 456666667777666677788776654 446788888876 45666666555544
No 412
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=24.72 E-value=1.9e+02 Score=19.46 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCcEEEEecCCCChHH
Q 033109 50 AVKRLFCGMGVNPTVYELDEDPKGKD 75 (127)
Q Consensus 50 ~~k~~L~~~~i~~~~v~id~~~~~~~ 75 (127)
++..+|++++++|+.++........+
T Consensus 3 ~~~~~L~~~~i~~~~~~~~~~~t~e~ 28 (156)
T cd04335 3 ELLALLDELGIAYETVEHPPVFTVEE 28 (156)
T ss_pred HHHHHHHHCCCceEEEecCCcCCHHH
Confidence 57889999999999988765444333
No 413
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=24.70 E-value=1.6e+02 Score=19.65 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCcEEEEecCCCC
Q 033109 50 AVKRLFCGMGVNPTVYELDEDPK 72 (127)
Q Consensus 50 ~~k~~L~~~~i~~~~v~id~~~~ 72 (127)
.+.++|++++++|+.++-...++
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~~ 24 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDPD 24 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCCC
Confidence 47889999999999999886543
No 414
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=24.13 E-value=4.2e+02 Score=22.02 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=45.2
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCC-cEEEEecCCC--ChHHHHHHHHHHhCCCCCccEEE---ECCEEEeecHHH
Q 033109 33 SENAVVIFSISSCCMCHAVKRLFCGMGVN-PTVYELDEDP--KGKDMEKALMRLLGTSPAVPVVF---IGGKLVGSMDRV 106 (127)
Q Consensus 33 ~~~~v~if~~~~Cp~C~~~k~~L~~~~i~-~~~v~id~~~--~~~~~~~~l~~~~g~~~~vP~if---v~g~~igG~~~~ 106 (127)
.-.++++|++..|.|...--..+-.+|.. ...|+.+++- ....+++.+.+.-. +..+|.+. .|-...|.||+|
T Consensus 194 ~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~-kg~~Pf~vnaTaGTTV~GAFDdL 272 (510)
T KOG0629|consen 194 ALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKA-KGGVPFFVNATAGTTVLGAFDDL 272 (510)
T ss_pred cCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHh-cCCCCeEEEecCCceeeeccCcH
Confidence 44579999999999997666666666653 3444444432 12344444443333 22467654 244678999987
Q ss_pred HHh
Q 033109 107 MAS 109 (127)
Q Consensus 107 ~~~ 109 (127)
...
T Consensus 273 ~~i 275 (510)
T KOG0629|consen 273 NGI 275 (510)
T ss_pred HHH
Confidence 654
No 415
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=24.02 E-value=1.6e+02 Score=21.37 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=31.5
Q ss_pred HHHHHhcCCCcEEEEecCCC-------------ChHH-----------HHHHHHHHhCCCCCccE-EEECCEEEeecHHH
Q 033109 52 KRLFCGMGVNPTVYELDEDP-------------KGKD-----------MEKALMRLLGTSPAVPV-VFIGGKLVGSMDRV 106 (127)
Q Consensus 52 k~~L~~~~i~~~~v~id~~~-------------~~~~-----------~~~~l~~~~g~~~~vP~-ifv~g~~igG~~~~ 106 (127)
-..|-.+++....|.|+.+. +..+ ++-.|.+.-+.. ++|- .||+++-.-+..++
T Consensus 53 a~~l~~l~vqiS~V~vt~dFS~~~vYWm~~~~geN~e~e~~L~rs~~~~rh~l~~~~~~g-~vP~IkFV~DK~~~~l~e~ 131 (207)
T KOG4700|consen 53 AEMLGRLQVQISRVRVTRDFSQVSVYWMCRGDGENSEIEDFLERSKHQIRHRLEESIGIG-TVPEIKFVGDKALLMLQEM 131 (207)
T ss_pred HHHHhhcceeEEEEEeccchhhheeEEEecCCccHHHHHHHHHHHHHHHHHHHHHHhccc-cCCceEEecchHHHHHHHH
Confidence 35566778887777776521 2222 333444444554 5655 58888755555544
Q ss_pred HHh
Q 033109 107 MAS 109 (127)
Q Consensus 107 ~~~ 109 (127)
.++
T Consensus 132 d~l 134 (207)
T KOG4700|consen 132 DKL 134 (207)
T ss_pred HHH
Confidence 443
No 416
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=23.96 E-value=3.6e+02 Score=21.12 Aligned_cols=62 Identities=13% Similarity=0.291 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHhcC---CcEEEEEeCCC---hhHHHHHHHHHhcCCCcEEEE-ecCCCChHHHHHHHHH
Q 033109 21 GGDPLEHIERLASE---NAVVIFSISSC---CMCHAVKRLFCGMGVNPTVYE-LDEDPKGKDMEKALMR 82 (127)
Q Consensus 21 ~~~~~~~~~~~~~~---~~v~if~~~~C---p~C~~~k~~L~~~~i~~~~v~-id~~~~~~~~~~~l~~ 82 (127)
.....+.+.+.+.. .++.|.+.+.. +.-.+++..|++.++.+..++ +..++....+.+....
T Consensus 12 G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~ 80 (377)
T cd08176 12 GAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAV 80 (377)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHH
Confidence 33445555555432 45666655543 567789999999999877664 6667776665555543
No 417
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.73 E-value=3.6e+02 Score=21.10 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=41.1
Q ss_pred EEEEEeC-----CChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEEC-CEEEeecHHHHHhh
Q 033109 37 VVIFSIS-----SCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIG-GKLVGSMDRVMASH 110 (127)
Q Consensus 37 v~if~~~-----~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~-g~~igG~~~~~~~~ 110 (127)
+.+|..+ -|+.|..+.-+++=.+ ....+++..++.. ++. ..+|.+..+ |..|+|..+++...
T Consensus 4 L~~~~~~~glptid~~sL~~l~y~kl~~-~~l~v~~ssN~~~----------s~s-g~LP~l~~~ng~~va~~~~iv~~L 71 (313)
T KOG3028|consen 4 LHIWSGGYGLPTIDPDSLAALIYLKLAG-APLKVVVSSNPWR----------SPS-GKLPYLITDNGTKVAGPVKIVQFL 71 (313)
T ss_pred EEEecCCCCCCCcChhHHHHHHHHHHhC-CCceeEeecCCCC----------CCC-CCCCeEEecCCceeccHHHHHHHH
Confidence 4455554 3999999988877655 2333444444431 232 249999765 59999999887764
Q ss_pred Hc
Q 033109 111 IN 112 (127)
Q Consensus 111 ~~ 112 (127)
+.
T Consensus 72 ~k 73 (313)
T KOG3028|consen 72 KK 73 (313)
T ss_pred HH
Confidence 43
No 418
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=23.61 E-value=1e+02 Score=20.35 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=18.2
Q ss_pred hCCCCCccEEEECCEEE-eecHHHHHh
Q 033109 84 LGTSPAVPVVFIGGKLV-GSMDRVMAS 109 (127)
Q Consensus 84 ~g~~~~vP~ifv~g~~i-gG~~~~~~~ 109 (127)
+|. +.+|-|.+|++++ =|..|+-.+
T Consensus 80 lGi-~k~PAVV~D~~~VVYG~~DV~~A 105 (113)
T TIGR03757 80 LGV-TKIPAVVVDRRYVVYGETDVARA 105 (113)
T ss_pred cCC-ccCCEEEEcCCeEEecCccHHHH
Confidence 476 5899999999876 366665544
No 419
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=23.49 E-value=2.6e+02 Score=20.96 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHhcCCcEEEEEeCCChhH-HHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCE
Q 033109 20 LGGDPLEHIERLASENAVVIFSISSCCMC-HAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGK 98 (127)
Q Consensus 20 ~~~~~~~~~~~~~~~~~v~if~~~~Cp~C-~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~ 98 (127)
+.+-+.+.++++-..+-.+=|.+..-... ..+..-|.++|++..+-+|...-. ...+.+.+ + .--|.++|++.
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~--aa~~~~~~--~--~lrP~l~v~d~ 97 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLP--AARQYLEE--N--QLRPYLIVDDD 97 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccH--HHHHHHHh--c--CCCceEEEccc
Confidence 45566777777775554444544444444 456777888999887777765432 12223432 2 24688888775
Q ss_pred EE
Q 033109 99 LV 100 (127)
Q Consensus 99 ~i 100 (127)
..
T Consensus 98 a~ 99 (262)
T KOG3040|consen 98 AL 99 (262)
T ss_pred ch
Confidence 44
No 420
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=23.09 E-value=1.7e+02 Score=16.97 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=18.6
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCC
Q 033109 33 SENAVVIFSISSCCMCHAVKRLFCGMGVN 61 (127)
Q Consensus 33 ~~~~v~if~~~~Cp~C~~~k~~L~~~~i~ 61 (127)
...+|++|. ..+..+..+-..|.+.|.+
T Consensus 55 ~~~~iv~~c-~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 55 KDKPVVVYC-RSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCCeEEEEe-CCCcHHHHHHHHHHHcCCC
Confidence 344577776 5566667777777777765
No 421
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=23.07 E-value=1.5e+02 Score=17.91 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=23.4
Q ss_pred EEEEEeCCChhHHHH----HHHHHhc-C--CCcEEEEecCCCCh
Q 033109 37 VVIFSISSCCMCHAV----KRLFCGM-G--VNPTVYELDEDPKG 73 (127)
Q Consensus 37 v~if~~~~Cp~C~~~----k~~L~~~-~--i~~~~v~id~~~~~ 73 (127)
..+|....-|...++ ++++++. + +..+++||..+|+.
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~l 47 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQL 47 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhH
Confidence 456777777777655 4445443 3 34577888888753
No 422
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=23.04 E-value=36 Score=20.57 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=27.8
Q ss_pred CCccEEEECCEEEeecHHHHHhhHcCCcHHHHHhc
Q 033109 88 PAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEA 122 (127)
Q Consensus 88 ~~vP~ifv~g~~igG~~~~~~~~~~g~L~~~l~~~ 122 (127)
...|.||+=+..-||.--...+.+...+.++|+++
T Consensus 33 ~~~~~i~lyD~~~GG~G~~~~l~~~~~~~~ll~~A 67 (84)
T PF09369_consen 33 QGPPRIFLYDTVPGGAGYAERLFERERFEELLRRA 67 (84)
T ss_pred CCccEEEEEECCCCchhhHhhhcChhHHHHHHHHH
Confidence 36899999888888888777777777788888764
No 423
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.92 E-value=3.8e+02 Score=21.01 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHhcC---CcEEEEEeCC---ChhHHHHHHHHHhcCCCcEEEE-ecCCCChHHHHHHHHH
Q 033109 21 GGDPLEHIERLASE---NAVVIFSISS---CCMCHAVKRLFCGMGVNPTVYE-LDEDPKGKDMEKALMR 82 (127)
Q Consensus 21 ~~~~~~~~~~~~~~---~~v~if~~~~---Cp~C~~~k~~L~~~~i~~~~v~-id~~~~~~~~~~~l~~ 82 (127)
.....+.+.+.+.. .++.|.+.+. .++..++...|++.++.+..++ +..++....+.+.+..
T Consensus 12 G~g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~ 80 (377)
T cd08188 12 GRGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAEL 80 (377)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHH
Confidence 44555566555543 4666665543 3567889999999999887764 6666766666555543
No 424
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=22.92 E-value=3.7e+02 Score=20.99 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=40.8
Q ss_pred CCHHHHHHHHhcC--CcEEEEEeC----CChhHHHHHHHHHhcCCCcEEE-EecCCCChHHHHHHHHH
Q 033109 22 GDPLEHIERLASE--NAVVIFSIS----SCCMCHAVKRLFCGMGVNPTVY-ELDEDPKGKDMEKALMR 82 (127)
Q Consensus 22 ~~~~~~~~~~~~~--~~v~if~~~----~Cp~C~~~k~~L~~~~i~~~~v-~id~~~~~~~~~~~l~~ 82 (127)
....+.+.+.+.. .++.|.+.+ ..+...+++..|++.++.+..+ ++..++....+.+....
T Consensus 11 ~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~ 78 (380)
T cd08185 11 AGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAAL 78 (380)
T ss_pred cCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHH
Confidence 3444555554442 567776654 4678889999999999998766 47777776666555433
No 425
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=22.92 E-value=52 Score=27.20 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=25.5
Q ss_pred EEEeCCChhHHHHHHHHHhcCCCcEEEE
Q 033109 39 IFSISSCCMCHAVKRLFCGMGVNPTVYE 66 (127)
Q Consensus 39 if~~~~Cp~C~~~k~~L~~~~i~~~~v~ 66 (127)
=|+.|.|.|-.-+..+|++.|+.|..+|
T Consensus 180 GiWlPEcay~pgie~~l~~~Gi~yf~vd 207 (504)
T COG1543 180 GIWLPECAYAPGIERILKDAGIEYFFVD 207 (504)
T ss_pred ceechhhccccchHHHHHhcCceEEEec
Confidence 3668899999999999999999999998
No 426
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=22.80 E-value=1.8e+02 Score=20.12 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=22.7
Q ss_pred CcEEEEE-eCCChhHHHH-HHHHHhcCCC-cEEEEec
Q 033109 35 NAVVIFS-ISSCCMCHAV-KRLFCGMGVN-PTVYELD 68 (127)
Q Consensus 35 ~~v~if~-~~~Cp~C~~~-k~~L~~~~i~-~~~v~id 68 (127)
..++||. ++-|.+|... ..+.+++|++ .++++.+
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~~ 136 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEPD 136 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEecC
Confidence 3466766 5789999966 4455778997 4555443
No 427
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=22.59 E-value=3.4e+02 Score=20.39 Aligned_cols=87 Identities=15% Similarity=0.236 Sum_probs=50.5
Q ss_pred CCcEEEEEeCCCh-hHH----HHHHHHHhcCC-CcEEEEecCCCChHHHHHHHHHHhCCC--CCccEEEECCEEEeecHH
Q 033109 34 ENAVVIFSISSCC-MCH----AVKRLFCGMGV-NPTVYELDEDPKGKDMEKALMRLLGTS--PAVPVVFIGGKLVGSMDR 105 (127)
Q Consensus 34 ~~~v~if~~~~Cp-~C~----~~k~~L~~~~i-~~~~v~id~~~~~~~~~~~l~~~~g~~--~~vP~ifv~g~~igG~~~ 105 (127)
...+++|...+-. +.. -...+|+++|. +.....+...|....+.+.|+. .|.. .-.|..+|-|++.- .
T Consensus 136 k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~l~~-~~~~~v~L~PlMlvAG~Ha~---n 211 (265)
T COG4822 136 KDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYPLVDTVIEYLRK-NGIKEVHLIPLMLVAGDHAK---N 211 (265)
T ss_pred cCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCCcHHHHHHHHHH-cCCceEEEeeeEEeechhhh---h
Confidence 4456666654322 222 23456677787 5677788888888887777765 2321 24688899887651 0
Q ss_pred HHHhhHcCCcHHHHHhcCc
Q 033109 106 VMASHINGTLVPLLKEAGA 124 (127)
Q Consensus 106 ~~~~~~~g~L~~~l~~~g~ 124 (127)
-.+-..+.+...+|+++|.
T Consensus 212 DMasddedswk~il~~~G~ 230 (265)
T COG4822 212 DMASDDEDSWKNILEKNGF 230 (265)
T ss_pred hhcccchHHHHHHHHhCCc
Confidence 1111223455666666664
No 428
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=22.49 E-value=39 Score=24.24 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=26.8
Q ss_pred CCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEeecH--HHHHhh
Q 033109 60 VNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVGSMD--RVMASH 110 (127)
Q Consensus 60 i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~--~~~~~~ 110 (127)
+-+..+.+|-.+....+.+-+.. .. +..+=.|+++|--+|||. |+.+++
T Consensus 37 v~~~~itvdG~DaT~~i~~m~~~-~~-r~~i~~v~LdGit~agFNiiD~~~l~ 87 (187)
T PF01949_consen 37 VAFGRITVDGMDATEAIIEMVKR-LF-RPDIRVVMLDGITFAGFNIIDIERLY 87 (187)
T ss_dssp EEEEEE-TT-S-HHHHHHHHHCC-TT-TTTEEEEEESSSEETTTEE--HHHHH
T ss_pred EEEEEEEECCchHHHHHHHHHHh-cc-cCcceEEEECCEeEEeeEEecHHHHH
Confidence 44566667766555543333322 12 245667889999999988 555554
No 429
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=22.37 E-value=1.7e+02 Score=19.81 Aligned_cols=47 Identities=30% Similarity=0.304 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcCCcHHHHHhcCcccC
Q 033109 74 KDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGALWL 127 (127)
Q Consensus 74 ~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g~L~~~l~~~g~~~~ 127 (127)
.++...+....+. ..-|.|+|.+.-=..++++.+ +-..|+++|..+|
T Consensus 82 ~~l~~~l~~~~~~-~~~~~v~i~aD~~v~y~~vv~------vm~~l~~aG~~~v 128 (137)
T COG0848 82 EELEAALAALAKG-KKNPRVVIRADKNVKYGTVVK------VMDLLKEAGFKKV 128 (137)
T ss_pred HHHHHHHHHHhcC-CCCceEEEEeCCCCCHHHHHH------HHHHHHHcCCceE
Confidence 4456667777653 346788887765555666555 3456777777653
No 430
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=22.34 E-value=2.5e+02 Score=20.60 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHhcCCC-cEEEEecCCCC-hHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcC
Q 033109 52 KRLFCGMGVN-PTVYELDEDPK-GKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHING 113 (127)
Q Consensus 52 k~~L~~~~i~-~~~v~id~~~~-~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g 113 (127)
-+.+.+.|+. +..+|++.... ...-.+.+++.... ..+|.++-+| |...+++.++...|
T Consensus 36 a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~~GG--i~s~~d~~~~~~~G 96 (254)
T TIGR00735 36 AQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-VFIPLTVGGG--IKSIEDVDKLLRAG 96 (254)
T ss_pred HHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-cCCCEEEECC--CCCHHHHHHHHHcC
Confidence 3344557765 67778876532 11112233344342 3588888887 45556666655443
No 431
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=22.18 E-value=3.1e+02 Score=19.72 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=25.2
Q ss_pred CCcEEEEEeCC---ChhHHHHHHHHHhcCCC-cEEEEecC
Q 033109 34 ENAVVIFSISS---CCMCHAVKRLFCGMGVN-PTVYELDE 69 (127)
Q Consensus 34 ~~~v~if~~~~---Cp~C~~~k~~L~~~~i~-~~~v~id~ 69 (127)
..+|++.-... +.+|.+....|.++|.. .+.++++.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~ 68 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDS 68 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCC
Confidence 34565554443 88899999999999985 55566653
No 432
>PRK05313 hypothetical protein; Provisional
Probab=22.06 E-value=3.3e+02 Score=22.46 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCC
Q 033109 48 CHAVKRLFCGMGVNPTVYELDEDP 71 (127)
Q Consensus 48 C~~~k~~L~~~~i~~~~v~id~~~ 71 (127)
|+.+..+.+++|++..-+.|...|
T Consensus 57 v~~~~~i~~e~GipIvnkRIsvtP 80 (452)
T PRK05313 57 VEVAEEIEREYGIPIVNKRISVTP 80 (452)
T ss_pred HHHHHHHHHHhCCeEEEEEEeeCC
Confidence 344556677889997766666544
No 433
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=22.01 E-value=1.7e+02 Score=21.29 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCCCcEEEEecCCCC--hHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcC
Q 033109 47 MCHAVKRLFCGMGVNPTVYELDEDPK--GKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHING 113 (127)
Q Consensus 47 ~C~~~k~~L~~~~i~~~~v~id~~~~--~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g 113 (127)
....+...+.+++..+-..||+.+-. +.. .+.+++.... ..+|.+.-+| ++..+|+.++.+.|
T Consensus 142 ~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d-~eli~~i~~~-~~~pvia~GG--i~s~ed~~~l~~~G 206 (221)
T TIGR00734 142 SLEEVRDFLNSFDYGLIVLDIHSVGTMKGPN-LELLTKTLEL-SEHPVMLGGG--ISGVEDLELLKEMG 206 (221)
T ss_pred cHHHHHHHHHhcCCEEEEEECCccccCCCCC-HHHHHHHHhh-CCCCEEEeCC--CCCHHHHHHHHHCC
Confidence 44456666677776545556665311 111 1123444443 4689888887 77888887766544
No 434
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=21.94 E-value=3.4e+02 Score=22.86 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=49.6
Q ss_pred cEEEEE--eCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHh--C-------------------CCCCccE
Q 033109 36 AVVIFS--ISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLL--G-------------------TSPAVPV 92 (127)
Q Consensus 36 ~v~if~--~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~--g-------------------~~~~vP~ 92 (127)
+|.|.+ .+.=|.++++...|+++|++|+..-+.-+.....+.+.+++.- | ..++.|+
T Consensus 412 ~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pv 491 (577)
T PLN02948 412 LVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPV 491 (577)
T ss_pred eEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCE
Confidence 354444 4678999999999999999998777777766555544433321 1 0256777
Q ss_pred EEE--CCEEEeecHHHHHhhHc
Q 033109 93 VFI--GGKLVGSMDRVMASHIN 112 (127)
Q Consensus 93 ifv--~g~~igG~~~~~~~~~~ 112 (127)
|=| ++...+|.|.|......
T Consensus 492 i~vp~~~~~~~g~~~l~s~~~~ 513 (577)
T PLN02948 492 IGVPVKTSHLDGLDSLLSIVQM 513 (577)
T ss_pred EEcCCCCCCCCcHHHHHHHhcC
Confidence 743 33356777776665443
No 435
>PRK08118 topology modulation protein; Reviewed
Probab=21.75 E-value=1.4e+02 Score=20.42 Aligned_cols=32 Identities=3% Similarity=0.087 Sum_probs=27.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEE
Q 033109 35 NAVVIFSISSCCMCHAVKRLFCGMGVNPTVYE 66 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~ 66 (127)
.+|+|++.+++.-..-++.+-+.+++++...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 57899999999999999999999998866555
No 436
>cd08025 RNR_PFL_like_DUF711 Uncharacterized proteins with similarity to Ribonucleotide reductase and Pyruvate formate lyase. This subfamily contains Streptococcus pneumoniae Sp0239 and similar uncharacterized proteins. Sp0239 is structurally similar to ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL), which are believed to have diverged from a common ancestor. RNR and PFL possess a ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. PFL is an essential enzyme in anaerobic bacteria that catalyzes the conversion of pyruvate and CoA to acteylCoA and formate.
Probab=21.72 E-value=3.3e+02 Score=22.11 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCC
Q 033109 48 CHAVKRLFCGMGVNPTVYELDEDP 71 (127)
Q Consensus 48 C~~~k~~L~~~~i~~~~v~id~~~ 71 (127)
|+.+..+.+++|++..-+.|...|
T Consensus 53 v~~~~~i~~e~GipI~nkRIsvtP 76 (400)
T cd08025 53 VETVEEVSSELGVPIVNKRISVTP 76 (400)
T ss_pred HHHHHHHHHHhCCeEEEEEEeeCC
Confidence 345556677889997766665544
No 437
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=21.63 E-value=2.2e+02 Score=20.67 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCE
Q 033109 47 MCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGK 98 (127)
Q Consensus 47 ~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~ 98 (127)
....++.+|+++++.--.+.+..+.....+.+.+. |.+..+|.+.|..+
T Consensus 137 ~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~---~~~~y~p~iiV~NK 185 (233)
T cd01896 137 DEKTIKAILREYKIHNADVLIREDITVDDLIDVIE---GNRVYIPCLYVYNK 185 (233)
T ss_pred CHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHh---CCceEeeEEEEEEC
Confidence 45789999999999877777766655555555552 43345788877554
No 438
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=21.16 E-value=1e+02 Score=23.37 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=16.9
Q ss_pred CCChhHHHHHHHHHh-cCCC
Q 033109 43 SSCCMCHAVKRLFCG-MGVN 61 (127)
Q Consensus 43 ~~Cp~C~~~k~~L~~-~~i~ 61 (127)
..||..+.+++.|++ +|++
T Consensus 173 ~~~pla~~~R~~lr~~~~~~ 192 (268)
T PRK15116 173 IQDPLAAKLRERLKSDFGVV 192 (268)
T ss_pred cCChHHHHHHHHHHHhhCCC
Confidence 569999999999998 7886
No 439
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=21.06 E-value=64 Score=16.65 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=8.2
Q ss_pred HHHHHHHhcCCCc
Q 033109 50 AVKRLFCGMGVNP 62 (127)
Q Consensus 50 ~~k~~L~~~~i~~ 62 (127)
+.|.+|.++||.|
T Consensus 8 ~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 8 QLKRILDEHGIEF 20 (35)
T ss_dssp HHHHHHHHHT---
T ss_pred HHHHHHHHcCCCC
Confidence 5788888888854
No 440
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=20.97 E-value=1.9e+02 Score=20.45 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=4.2
Q ss_pred CEEEeecHH
Q 033109 97 GKLVGSMDR 105 (127)
Q Consensus 97 g~~igG~~~ 105 (127)
|...||+-.
T Consensus 65 GSSlGG~~A 73 (187)
T PF05728_consen 65 GSSLGGFYA 73 (187)
T ss_pred EEChHHHHH
Confidence 344555543
No 441
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=20.97 E-value=3.3e+02 Score=19.65 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=44.9
Q ss_pred cCCcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCCh----------------HHHHHHHHHHhCCCCCccEEE-E
Q 033109 33 SENAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKG----------------KDMEKALMRLLGTSPAVPVVF-I 95 (127)
Q Consensus 33 ~~~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~----------------~~~~~~l~~~~g~~~~vP~if-v 95 (127)
+..+|++|+..+---. +...+|+..+.-.-.+|+..+++. ..+.+..-+..+. ..+-.|| |
T Consensus 2 sagrVivYGGkGALGS-acv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~g-ekvDav~CV 79 (236)
T KOG4022|consen 2 SAGRVIVYGGKGALGS-ACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQG-EKVDAVFCV 79 (236)
T ss_pred CCceEEEEcCcchHhH-HHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcc-cccceEEEe
Confidence 3568999987663222 223456666655444555443321 1122222222332 3465554 7
Q ss_pred CCEEEeecHHHHHhhHcCCc
Q 033109 96 GGKLVGSMDRVMASHINGTL 115 (127)
Q Consensus 96 ~g~~igG~~~~~~~~~~g~L 115 (127)
-|-+-||.-.-+++.++-+|
T Consensus 80 AGGWAGGnAksKdl~KNaDL 99 (236)
T KOG4022|consen 80 AGGWAGGNAKSKDLVKNADL 99 (236)
T ss_pred eccccCCCcchhhhhhchhh
Confidence 78889998877777777665
No 442
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=20.86 E-value=2.1e+02 Score=20.65 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=31.6
Q ss_pred HHHHHHhcCCC-cEEEEecCCCC-hHHHHHHHHHHhCCCCCccEEEECCEEEeecHHHHHhhHcC
Q 033109 51 VKRLFCGMGVN-PTVYELDEDPK-GKDMEKALMRLLGTSPAVPVVFIGGKLVGSMDRVMASHING 113 (127)
Q Consensus 51 ~k~~L~~~~i~-~~~v~id~~~~-~~~~~~~l~~~~g~~~~vP~ifv~g~~igG~~~~~~~~~~g 113 (127)
.-+.|.+.|+. +...|++.... ...-.+.+++.... ..+|.+..+| |...+++..+...|
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~-~~~pv~~~GG--I~s~~d~~~~l~~G 93 (243)
T cd04731 32 LAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE-VFIPLTVGGG--IRSLEDARRLLRAG 93 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHh-CCCCEEEeCC--CCCHHHHHHHHHcC
Confidence 34446667776 56666664311 11111123333332 3589887777 55667776665544
No 443
>PF09248 DUF1965: Domain of unknown function (DUF1965); InterPro: IPR015328 Members of this family of fungal domains adopt a structure that consists of an alpha/beta motif. Their exact function has not, as yet, been determined []. ; PDB: 1N9E_A 1RKY_A 1W7C_A 3PGB_A.
Probab=20.75 E-value=1.3e+02 Score=18.33 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=22.8
Q ss_pred CccEEEECCEEEeecHHHHHhhHcCCcHHHHHhc
Q 033109 89 AVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEA 122 (127)
Q Consensus 89 ~vP~ifv~g~~igG~~~~~~~~~~g~L~~~l~~~ 122 (127)
.+=-++-||++.-..++++++..+|.+.++-...
T Consensus 26 kv~gw~Yn~~fy~tteeFr~A~~~~~f~k~~~n~ 59 (74)
T PF09248_consen 26 KVLGWVYNGQFYPTTEEFREAWWSGDFKKLGPNV 59 (74)
T ss_dssp EEEEEEETTEEESSHHHHHHHHCSTT--------
T ss_pred EEEEEEECCEEcccHHHHHHHHhCCCceecCCCC
Confidence 3556778999999999999999999998765444
No 444
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=20.62 E-value=1.4e+02 Score=23.57 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEE-ECCEEEee
Q 033109 47 MCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVF-IGGKLVGS 102 (127)
Q Consensus 47 ~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~if-v~g~~igG 102 (127)
..+.+..+|+.++|+|..++=+..+....+.++++.... ..-|..+ |....+..
T Consensus 103 ~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~--~~~p~a~l~~~~~~~~ 157 (361)
T TIGR03297 103 QGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALA--TSRPYALVVRKGTFAS 157 (361)
T ss_pred HhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHH--HCCCEEEEEccccccc
Confidence 467789999999999998853333333445555554444 2466654 45555543
No 445
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=20.50 E-value=1.7e+02 Score=19.67 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=16.9
Q ss_pred CcEEEEEe-CCChhHHHHHHHHHh
Q 033109 35 NAVVIFSI-SSCCMCHAVKRLFCG 57 (127)
Q Consensus 35 ~~v~if~~-~~Cp~C~~~k~~L~~ 57 (127)
..|.+|+. +-|+.|..+..-|.+
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~ 120 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKK 120 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHH
Confidence 56889985 789999987555543
No 446
>PHA02558 uvsW UvsW helicase; Provisional
Probab=20.44 E-value=4.1e+02 Score=21.75 Aligned_cols=65 Identities=2% Similarity=-0.041 Sum_probs=35.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHhcCCCcEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEe-ecH
Q 033109 35 NAVVIFSISSCCMCHAVKRLFCGMGVNPTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVG-SMD 104 (127)
Q Consensus 35 ~~v~if~~~~Cp~C~~~k~~L~~~~i~~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ig-G~~ 104 (127)
.++.||+.... +|..+...|++.+++...+.=+...+.+ +.+.+.... .....+...+..+| |+|
T Consensus 345 ~~~lV~~~~~~-h~~~L~~~L~~~g~~v~~i~G~~~~~eR---~~i~~~~~~-~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 345 ENTFVMFKYVE-HGKPLYEMLKKVYDKVYYVSGEVDTEDR---NEMKKIAEG-GKGIIIVASYGVFSTGIS 410 (501)
T ss_pred CCEEEEEEEHH-HHHHHHHHHHHcCCCEEEEeCCCCHHHH---HHHHHHHhC-CCCeEEEEEcceeccccc
Confidence 45555555444 8999999999988865555443332222 223333322 13445555656665 554
No 447
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=20.40 E-value=4.3e+02 Score=20.73 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=33.3
Q ss_pred CcEEEEEeCC----ChhHHHHHHHHHhcCCCcEEEE-ecCCCChHHHHHHHHH
Q 033109 35 NAVVIFSISS----CCMCHAVKRLFCGMGVNPTVYE-LDEDPKGKDMEKALMR 82 (127)
Q Consensus 35 ~~v~if~~~~----Cp~C~~~k~~L~~~~i~~~~v~-id~~~~~~~~~~~l~~ 82 (127)
.++.|.+.+. ++...++...|++.++++..++ +..++....+.+....
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~ 79 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKL 79 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHH
Confidence 4566666543 6778899999999999877664 6666666655555443
No 448
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.33 E-value=2.3e+02 Score=21.41 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=31.5
Q ss_pred CHHHHHHHHhcCCcEEEEEeCCC-hhHHHHHHHHHhcCCCcE
Q 033109 23 DPLEHIERLASENAVVIFSISSC-CMCHAVKRLFCGMGVNPT 63 (127)
Q Consensus 23 ~~~~~~~~~~~~~~v~if~~~~C-p~C~~~k~~L~~~~i~~~ 63 (127)
...+.+++++...+|.++..+.| +.|..+..++++.++++-
T Consensus 57 ~a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i 98 (347)
T cd06340 57 IGATEAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPFV 98 (347)
T ss_pred HHHHHHHHHhccCCceEEecccchHhHHHHHHHHHHhCCCEE
Confidence 45667788888878877777766 568888899999888853
No 449
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=20.29 E-value=1.8e+02 Score=16.26 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=15.4
Q ss_pred HHHHHHHHHH-hCCCCCccEEEECC
Q 033109 74 KDMEKALMRL-LGTSPAVPVVFIGG 97 (127)
Q Consensus 74 ~~~~~~l~~~-~g~~~~vP~ifv~g 97 (127)
-++.++|.+. .+.....|+||=..
T Consensus 7 v~vlRel~r~~~~~~~~~PVVFTS~ 31 (58)
T PF08415_consen 7 VEVLRELARRGGGRAAVMPVVFTSM 31 (58)
T ss_pred HHHHHHHHHhcCCCCCcCCEEEeCC
Confidence 3455567666 33346789999764
No 450
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=20.27 E-value=48 Score=17.78 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCCCccEEEECC
Q 033109 77 EKALMRLLGTSPAVPVVFIGG 97 (127)
Q Consensus 77 ~~~l~~~~g~~~~vP~ifv~g 97 (127)
+.-+....|. ...|+||+.|
T Consensus 5 EsviWHilGY-~AmPvIil~G 24 (42)
T TIGR02808 5 ESTIWHVLGY-GAMPFIILSG 24 (42)
T ss_pred HHHHHHHhcc-cccchHHhhh
Confidence 3456778896 5899998877
No 451
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=20.07 E-value=2e+02 Score=17.94 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=10.2
Q ss_pred CCccEEEECCEEE
Q 033109 88 PAVPVVFIGGKLV 100 (127)
Q Consensus 88 ~~vP~ifv~g~~i 100 (127)
..+|.+||.|.-|
T Consensus 69 r~~emlFvRGd~V 81 (91)
T KOG3460|consen 69 RTVEMLFVRGDGV 81 (91)
T ss_pred cceeEEEEeCCeE
Confidence 4799999988633
No 452
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=20.07 E-value=4.2e+02 Score=20.52 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=51.6
Q ss_pred CCHHHHHHHHhcC-CcEEEEEeCCChhHHHHHHHHHhcCCCc--EEEEecCCCChH--HHHHHHHHHhCCCCCccEEEEC
Q 033109 22 GDPLEHIERLASE-NAVVIFSISSCCMCHAVKRLFCGMGVNP--TVYELDEDPKGK--DMEKALMRLLGTSPAVPVVFIG 96 (127)
Q Consensus 22 ~~~~~~~~~~~~~-~~v~if~~~~Cp~C~~~k~~L~~~~i~~--~~v~id~~~~~~--~~~~~l~~~~g~~~~vP~ifv~ 96 (127)
.++...|+.+..- +.|.+|+ +.|.--..+.+.....+++. -+.-.|...+.. .+..+.....+ +..|-.|-||
T Consensus 63 ~~~~sDLe~l~~~t~~IR~Y~-sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~-~d~v~~v~VG 140 (305)
T COG5309 63 DQVASDLELLASYTHSIRTYG-SDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNG-WDDVTTVTVG 140 (305)
T ss_pred HHHHhHHHHhccCCceEEEee-ccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHHHHHHHhccCC-CCceEEEEec
Confidence 3455556555543 3678888 77777677777777777552 233334322221 22222222233 5677778888
Q ss_pred CEEEeecH----HHHHhhHcCCcHHHHHhcC
Q 033109 97 GKLVGSMD----RVMASHINGTLVPLLKEAG 123 (127)
Q Consensus 97 g~~igG~~----~~~~~~~~g~L~~~l~~~g 123 (127)
.+.+-+.+ .+.+.. ...+..|+++|
T Consensus 141 nEal~r~~~tasql~~~I--~~vrsav~~ag 169 (305)
T COG5309 141 NEALNRNDLTASQLIEYI--DDVRSAVKEAG 169 (305)
T ss_pred hhhhhcCCCCHHHHHHHH--HHHHHHHHhcC
Confidence 87664332 333332 23455555554
No 453
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=20.05 E-value=1.7e+02 Score=15.83 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=26.4
Q ss_pred cEEEEecCCCChHHHHHHHHHHhCCCCCccEEEECCEEEe
Q 033109 62 PTVYELDEDPKGKDMEKALMRLLGTSPAVPVVFIGGKLVG 101 (127)
Q Consensus 62 ~~~v~id~~~~~~~~~~~l~~~~g~~~~vP~ifv~g~~ig 101 (127)
...++++.+..-.++.+.+...+|....--.++.+|+.+.
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~ 50 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE 50 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC
Confidence 4456777776677788888887775322345677887654
Done!