Query 033110
Match_columns 127
No_of_seqs 120 out of 155
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 16:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mk7_C Cytochrome C oxidase, C 43.8 18 0.00063 28.3 3.3 24 92-115 49-72 (311)
2 1iij_A ERBB-2 receptor protein 43.5 13 0.00043 22.1 1.8 25 96-120 9-33 (35)
3 2jwa_A Receptor tyrosine-prote 35.0 39 0.0013 20.8 3.1 24 97-120 14-37 (44)
4 3ukm_A Potassium channel subfa 28.3 41 0.0014 27.0 3.1 22 99-120 15-36 (280)
5 3j1z_P YIIP, cation efflux fam 25.7 67 0.0023 25.1 3.8 31 96-126 82-112 (306)
6 3o39_A Periplasmic protein rel 25.4 45 0.0015 23.3 2.5 14 53-66 84-97 (108)
7 1skh_A Major prion protein 2; 21.0 46 0.0016 19.3 1.5 17 94-112 3-19 (30)
8 3h90_A Ferrous-iron efflux pum 19.9 1.2E+02 0.004 23.1 4.1 30 96-125 73-102 (283)
9 3um7_A Potassium channel subfa 17.9 87 0.003 25.4 3.1 19 101-119 36-54 (309)
10 3vmt_A Monofunctional glycosyl 17.5 87 0.003 25.3 3.0 19 97-115 37-55 (263)
No 1
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=43.83 E-value=18 Score=28.28 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=19.8
Q ss_pred CCCCCccHHHHHHHHHHHhhhHHH
Q 033110 92 GKDYPVGPVLLGFFVFVVIGSSLF 115 (127)
Q Consensus 92 ~~K~PVgP~wLgLfiFVVcGsaIF 115 (127)
|-+-|+.+||+.+|++.++-+.+.
T Consensus 49 e~~nplp~ww~~~f~~~iv~~~~y 72 (311)
T 3mk7_C 49 EYDNPLPRWWFLLFIGTLVFGILY 72 (311)
T ss_dssp BCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hccCCCChHHHHHHHHHHHHHHHH
Confidence 346799999999999988877655
No 2
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=43.52 E-value=13 Score=22.14 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=19.8
Q ss_pred CccHHHHHHHHHHHhhhHHHHHHHH
Q 033110 96 PVGPVLLGFFVFVVIGSSLFQIIRT 120 (127)
Q Consensus 96 PVgP~wLgLfiFVVcGsaIFEIIr~ 120 (127)
.|.....|+|+||++|.+++=.+|.
T Consensus 9 sIaagVvglll~vii~l~~~~~iRR 33 (35)
T 1iij_A 9 FIIATVVGVLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred EeHHHHHHHHHHHHHHHHhheEEee
Confidence 3556778899999999988777664
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.97 E-value=39 Score=20.81 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHH
Q 033110 97 VGPVLLGFFVFVVIGSSLFQIIRT 120 (127)
Q Consensus 97 VgP~wLgLfiFVVcGsaIFEIIr~ 120 (127)
|.-..+|+++||+.|.+++=.+|.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheeh
Confidence 445678899999999999888775
No 4
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=28.25 E-value=41 Score=27.02 Aligned_cols=22 Identities=23% Similarity=0.708 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 033110 99 PVLLGFFVFVVIGSSLFQIIRT 120 (127)
Q Consensus 99 P~wLgLfiFVVcGsaIFEIIr~ 120 (127)
..+++.++++++|+++|+.|..
T Consensus 15 lLil~~~~Yl~~GA~vF~~LE~ 36 (280)
T 3ukm_A 15 FLVLGYLLYLVFGAVVFSSVEL 36 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4678889999999999998864
No 5
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=25.73 E-value=67 Score=25.05 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=25.0
Q ss_pred CccHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Q 033110 96 PVGPVLLGFFVFVVIGSSLFQIIRTATSGGM 126 (127)
Q Consensus 96 PVgP~wLgLfiFVVcGsaIFEIIr~i~~g~~ 126 (127)
+++-...++++|++++..++|-++.+.++.+
T Consensus 82 ~l~al~~~~~l~~~~~~i~~eai~~l~~p~~ 112 (306)
T 3j1z_P 82 PLAALAQSAFIMGSAFLLLFYGGERLLNPSP 112 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheecCCC
Confidence 4567788999999999999998888776543
No 6
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=25.42 E-value=45 Score=23.34 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=12.4
Q ss_pred HHHHhhhCCHHHHH
Q 033110 53 LIMMLDAQTTSKRL 66 (127)
Q Consensus 53 ~~~~ldaqTp~qR~ 66 (127)
=|-|++-+||+||-
T Consensus 84 ~~qmy~lLTPEQk~ 97 (108)
T 3o39_A 84 QNKIYNILTPEQKK 97 (108)
T ss_dssp HHHHHTTSCHHHHH
T ss_pred HHHHHHhCCHHHHH
Confidence 48899999999994
No 7
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=21.03 E-value=46 Score=19.29 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=11.3
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 033110 94 DYPVGPVLLGFFVFVVIGS 112 (127)
Q Consensus 94 K~PVgP~wLgLfiFVVcGs 112 (127)
|+++|=|+|.+| |+-.|
T Consensus 3 k~~~~cwilvLf--va~ws 19 (30)
T 1skh_A 3 KSKIGSWILVLF--VAMWS 19 (30)
T ss_dssp TTTTTTHHHHHH--HHHHH
T ss_pred cccccHHHHHHH--HHHHh
Confidence 578898887765 44443
No 8
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=19.89 E-value=1.2e+02 Score=23.07 Aligned_cols=30 Identities=10% Similarity=-0.005 Sum_probs=24.1
Q ss_pred CccHHHHHHHHHHHhhhHHHHHHHHhhcCC
Q 033110 96 PVGPVLLGFFVFVVIGSSLFQIIRTATSGG 125 (127)
Q Consensus 96 PVgP~wLgLfiFVVcGsaIFEIIr~i~~g~ 125 (127)
|++-...++++|++++..+.|-++.+.++.
T Consensus 73 ~l~~l~~~~~l~~~~~~i~~eai~~l~~~~ 102 (283)
T 3h90_A 73 SLAALAQSMFISGSALFLFLTGIQHLISPT 102 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456778899999999999999888776654
No 9
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=17.92 E-value=87 Score=25.43 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 033110 101 LLGFFVFVVIGSSLFQIIR 119 (127)
Q Consensus 101 wLgLfiFVVcGsaIFEIIr 119 (127)
.+..+.++++|+++|+.|.
T Consensus 36 l~~~~~YL~~GA~vF~~LE 54 (309)
T 3um7_A 36 LALVLLYLVSGALVFRALE 54 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566778899999999874
No 10
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=17.50 E-value=87 Score=25.33 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=7.9
Q ss_pred ccHHHHHHHHHHHhhhHHH
Q 033110 97 VGPVLLGFFVFVVIGSSLF 115 (127)
Q Consensus 97 VgP~wLgLfiFVVcGsaIF 115 (127)
+-.+.+++++++++++.++
T Consensus 37 ~~~~~~~~l~~~~~~~~~~ 55 (263)
T 3vmt_A 37 LLKILLTILIIIALFIGIM 55 (263)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
Done!