Query 033110
Match_columns 127
No_of_seqs 120 out of 155
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 16:15:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033110.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033110hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zu1a1 g.37.1.4 (A:2-73) dsRN 11.2 68 0.0049 20.2 2.2 21 59-79 42-62 (72)
2 d1v54d_ f.23.1.1 (D:) Mitochon 8.3 2E+02 0.014 19.6 4.0 25 100-124 78-102 (144)
3 d1h41a2 d.92.2.2 (A:5-151) alp 7.9 99 0.0072 20.1 2.2 14 113-126 123-136 (147)
4 d1o5za1 c.59.1.2 (A:294-430) F 6.5 55 0.004 20.2 0.2 17 108-124 111-129 (137)
5 d2otaa1 a.284.1.1 (A:7-68) Hyp 6.3 2.4E+02 0.017 16.9 3.2 39 37-78 15-58 (62)
6 d1ylfa1 a.4.5.55 (A:5-142) Hyp 6.2 1.4E+02 0.01 18.6 2.2 49 11-59 60-115 (138)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 6.1 2.7E+02 0.02 16.7 3.6 23 100-122 33-55 (100)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 5.9 42 0.003 20.7 -0.7 23 100-122 22-44 (91)
9 d1miwa1 a.173.1.1 (A:140-404) 5.8 3.6E+02 0.026 17.2 4.8 41 27-69 19-59 (265)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.6 1.8E+02 0.013 18.0 2.4 16 100-115 39-54 (107)
No 1
>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=11.24 E-value=68 Score=20.18 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=18.0
Q ss_pred hCCHHHHHHhhhhHHHHHhhh
Q 033110 59 AQTTSKRLAVRKVDKFEKNIM 79 (127)
Q Consensus 59 aqTp~qR~AN~Ks~kFaKNi~ 79 (127)
-+..+||+|-=.++|+++|+.
T Consensus 42 L~seSQriaHYeskkHa~kvr 62 (72)
T d1zu1a1 42 LISESQKLAHYQSRKHANKVR 62 (72)
T ss_dssp CCSHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367899999988899999986
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.28 E-value=2e+02 Score=19.61 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhcC
Q 033110 100 VLLGFFVFVVIGSSLFQIIRTATSG 124 (127)
Q Consensus 100 ~wLgLfiFVVcGsaIFEIIr~i~~g 124 (127)
++-|.++|+.+|.++|-.++..-.+
T Consensus 78 v~g~~~~~i~~s~~i~~~~r~~v~p 102 (144)
T d1v54d_ 78 VVGAAMFFIGFTALLLIWEKHYVYG 102 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4456778999999999998886544
No 3
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=7.92 E-value=99 Score=20.11 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=11.5
Q ss_pred HHHHHHHHhhcCCC
Q 033110 113 SLFQIIRTATSGGM 126 (127)
Q Consensus 113 aIFEIIr~i~~g~~ 126 (127)
++|+++|.++.|.+
T Consensus 123 G~f~lLr~l~~~~~ 136 (147)
T d1h41a2 123 GSFHLLRLIQTQHA 136 (147)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 58999999988764
No 4
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.52 E-value=55 Score=20.19 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=11.5
Q ss_pred HHhhhHHH--HHHHHhhcC
Q 033110 108 VVIGSSLF--QIIRTATSG 124 (127)
Q Consensus 108 VVcGsaIF--EIIr~i~~g 124 (127)
+||||.-+ |+.+.+..|
T Consensus 111 lv~GSlylvgev~~~l~~~ 129 (137)
T d1o5za1 111 VVTGSLFLVGYVREFLTTG 129 (137)
T ss_dssp EEESCHHHHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHHHHHhc
Confidence 56777666 777776654
No 5
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=6.32 E-value=2.4e+02 Score=16.92 Aligned_cols=39 Identities=28% Similarity=0.258 Sum_probs=23.7
Q ss_pred Hhhccc-chhhHHHHHH----HHHHhhhCCHHHHHHhhhhHHHHHhh
Q 033110 37 SQLNLR-KSSLCLLMLS----LIMMLDAQTTSKRLAVRKVDKFEKNI 78 (127)
Q Consensus 37 ~ql~~r-~~~~~~~~~s----~~~~ldaqTp~qR~AN~Ks~kFaKNi 78 (127)
+-|..- -+-||-+||- -|.. ...+|+||.+=. ++|++.-
T Consensus 15 ~vLeKh~Ap~DLSLMvLGN~vTnii-~~V~~~qR~~iA--e~Fa~AL 58 (62)
T d2otaa1 15 DVLVKEEVTPDLALMCLGNAVTNII-AQVPESKRVAVV--DNFTKAL 58 (62)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHH-TTSCGGGHHHHH--HHHHHHH
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHH-HhCCHHHHHHHH--HHHHHHH
Confidence 344333 3568888863 3433 568999996543 3688753
No 6
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=6.19 E-value=1.4e+02 Score=18.60 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=20.0
Q ss_pred cceeEehhhHHHHHHHHHHHHH---HHHHHhhcccchhhHHH----HHHHHHHhhh
Q 033110 11 GGFVLFIKISFLIMSNIARYCI---LVIVSQLNLRKSSLCLL----MLSLIMMLDA 59 (127)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~~~i~ql~~r~~~~~~~----~~s~~~~lda 59 (127)
|||.|--...=.-+..||+..- .......+....++|.+ .|.+|..++.
T Consensus 60 GG~~L~~~p~~ItL~dI~~aie~~~~~~~~~~~~~~~~~c~~~~~~~c~l~~~~~~ 115 (138)
T d1ylfa1 60 GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQ 115 (138)
T ss_dssp CCEEESSCGGGCBHHHHHHHHCC------------------CHHHHHHHHHHHHHH
T ss_pred CCceecCCHhhcCHHHHHHHHhcccccceeeeccCCCCcccccccchHHHHHHHHH
Confidence 8888764444444556766542 22233345566677754 4777776654
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.10 E-value=2.7e+02 Score=16.66 Aligned_cols=23 Identities=0% Similarity=0.005 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhh
Q 033110 100 VLLGFFVFVVIGSSLFQIIRTAT 122 (127)
Q Consensus 100 ~wLgLfiFVVcGsaIFEIIr~i~ 122 (127)
+|+..++|+++.+.++=.+-..+
T Consensus 33 ~~i~~~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 33 LVIIAAITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 45667777777777766554433
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.90 E-value=42 Score=20.70 Aligned_cols=23 Identities=9% Similarity=-0.151 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhh
Q 033110 100 VLLGFFVFVVIGSSLFQIIRTAT 122 (127)
Q Consensus 100 ~wLgLfiFVVcGsaIFEIIr~i~ 122 (127)
+|+.+++||++.++++-.+-..+
T Consensus 22 ~~i~~iv~v~V~~~~~~~~~ryR 44 (91)
T d1fftb2 22 FGLMLIVVIPAILMAVGFAWKYR 44 (91)
T ss_dssp HHHTTTTTTHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhhheeee
Confidence 45566666777777666554443
No 9
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.80 E-value=3.6e+02 Score=17.20 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHHHHhhhCCHHHHHHhh
Q 033110 27 IARYCILVIVSQLNLRKSSLCLLMLSLIMMLDAQTTSKRLAVR 69 (127)
Q Consensus 27 ~~~~~~~~~i~ql~~r~~~~~~~~~s~~~~ldaqTp~qR~AN~ 69 (127)
|.|.+-.+ |++|-.=.++..-||.=|+.+-..-+..|+.+|
T Consensus 19 iLRa~RFa--~rl~f~i~~~t~~ai~~~~~~l~~vS~ERI~~E 59 (265)
T d1miwa1 19 MMRAVRFV--SELGFALAPDTEQAIVQNAPLLAHISVERMTME 59 (265)
T ss_dssp HHHHHHHH--HHHCCEECHHHHHHHHHHGGGGGGSCHHHHHHH
T ss_pred HHHHHHHH--HHhCCCccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44544443 589998888888899888887777778888776
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.62 E-value=1.8e+02 Score=17.99 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHH
Q 033110 100 VLLGFFVFVVIGSSLF 115 (127)
Q Consensus 100 ~wLgLfiFVVcGsaIF 115 (127)
.|+..++|++++++++
T Consensus 39 ~~i~~~I~~~V~~~~~ 54 (107)
T d3ehbb2 39 LYIITAVTIFVCLLLL 54 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Done!