BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033111
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XW3|A Chain A, Crystal Structure Of Human Sulfiredoxin (srx)
Length = 110
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
+PL + RPL D KV+ L+D+I++ VP IDV+ + G +Y F GCHR
Sbjct: 17 VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHR 74
Query: 99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
Y A+Q+L TI K+ + T LR +L
Sbjct: 75 YAAYQQLQRETIPAKLVQSTLSDLRVYL 102
>pdb|2RII|X Chain X, Crystal Structure Of Human Peroxiredoxin I In Complex With
Sulfiredoxin
pdb|2RII|Y Chain Y, Crystal Structure Of Human Peroxiredoxin I In Complex With
Sulfiredoxin
Length = 110
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
+PL + RPL D KV+ L+D+I++ VP IDV+ + G +Y F GCHR
Sbjct: 17 VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHR 74
Query: 99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
Y A+Q+L TI K+ + T LR +L
Sbjct: 75 YAAYQQLQRETIPAKLVQSTLSDLRVYL 102
>pdb|1YZS|A Chain A, Solution Structure Of Human Sulfiredoxin (Srx)
pdb|2B6F|A Chain A, Solution Structure Of Human Sulfiredoxin (Srx)
Length = 121
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
+PL + RPL D KV+ L+D+I++ VP IDV+ + G +Y F GCHR
Sbjct: 28 VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHR 85
Query: 99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
Y A+Q+L TI K+ + T LR +L
Sbjct: 86 YAAYQQLQRETIPAKLVQSTLSDLRVYL 113
>pdb|3HY2|X Chain X, Crystal Structure Of Sulfiredoxin In Complex With
Peroxiredoxin I And Atp:mg2+
pdb|3HY2|Y Chain Y, Crystal Structure Of Sulfiredoxin In Complex With
Peroxiredoxin I And Atp:mg2+
Length = 110
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
+PL + RPL D KV+ L+D+I++ VP IDV+ + G +Y F G HR
Sbjct: 17 VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGAHR 74
Query: 99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
Y A+Q+L TI K+ + T LR +L
Sbjct: 75 YAAYQQLQRETIPAKLVQSTLSDLRVYL 102
>pdb|3CYI|A Chain A, Crystal Structure Of Human Sulfiredoxin (Srx) In Complex
With Atp:mg2+
Length = 110
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
+PL + RPL D KV+ L+D+I++ VP IDV+ + G +Y F G HR
Sbjct: 17 VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGSHR 74
Query: 99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
Y A+Q+L TI K+ + T LR +L
Sbjct: 75 YAAYQQLQRETIPAKLVQSTLSDLRVYL 102
>pdb|1XW4|X Chain X, Crystal Structure Of Human Sulfiredoxin (Srx) In Complex
With Adp
Length = 110
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
+PL + RPL D KV+ L+D+I++ VP IDV+ + G +Y F G HR
Sbjct: 17 VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGXHR 74
Query: 99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
Y A+Q+L TI K+ + T LR +L
Sbjct: 75 YAAYQQLQRETIPAKLVQSTLSDLRVYL 102
>pdb|1VZ0|A Chain A, Chromosome Segregation Protein Spo0j From Thermus
Thermophilus
pdb|1VZ0|B Chain B, Chromosome Segregation Protein Spo0j From Thermus
Thermophilus
pdb|1VZ0|C Chain C, Chromosome Segregation Protein Spo0j From Thermus
Thermophilus
pdb|1VZ0|D Chain D, Chromosome Segregation Protein Spo0j From Thermus
Thermophilus
pdb|1VZ0|E Chain E, Chromosome Segregation Protein Spo0j From Thermus
Thermophilus
pdb|1VZ0|F Chain F, Chromosome Segregation Protein Spo0j From Thermus
Thermophilus
pdb|1VZ0|G Chain G, Chromosome Segregation Protein Spo0j From Thermus
Thermophilus
pdb|1VZ0|H Chain H, Chromosome Segregation Protein Spo0j From Thermus
Thermophilus
Length = 230
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 42 ILELPLDKIR-RPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYE 100
++ LPL IR P + + +KEL DSI++ GL P+ V Y +G RY
Sbjct: 23 VVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERRYR 82
Query: 101 AHQRLGLPTIRCKVR 115
A GL + V+
Sbjct: 83 AALMAGLQEVPAVVK 97
>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide
Length = 390
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEA 101
LPL +I R + N V+ L+D Q G +P+D ++ +YY F+G H++ A
Sbjct: 171 LPLAEIMAVCRRHQGN--YPVRVLVDGAQSAG-SLPLDFSRLEVDYYAFTG-HKWFA 223
>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N2T|B Chain B, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N31|A Chain A, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
pdb|1N31|B Chain B, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
Length = 386
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSG 95
LPL +I R + N V+ L+D Q G +P+D ++ +YY F+G
Sbjct: 167 LPLAEIMAVCRRHQGN--YPVRVLVDGAQSAG-SLPLDFSRLEVDYYAFTG 214
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 62 QNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRY 99
Q+ K L+D Q + + P+DV +D ++Y FSG Y
Sbjct: 192 QHGAKVLVDGAQAV-MHHPVDVQALDCDFYVFSGHKLY 228
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 62 QNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRY 99
Q+ K L+D Q + + P+DV +D ++Y FSG Y
Sbjct: 192 QHGAKVLVDGAQAV-MHHPVDVQALDCDFYVFSGHKLY 228
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 62 QNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRY 99
Q+ K L+D Q + + P+DV +D ++Y FSG Y
Sbjct: 194 QHGAKVLVDGAQAV-MHHPVDVQALDCDFYVFSGHKLY 230
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 62 QNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRY 99
Q+ K L+D Q + + P+DV +D ++Y FSG Y
Sbjct: 192 QHGAKVLVDGAQAV-MHHPVDVQALDCDFYVFSGHKLY 228
>pdb|3VP9|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Yeast
General Corepressor Tup1p Mutant
pdb|3VP9|B Chain B, Crystal Structure Of The N-Terminal Domain Of The Yeast
General Corepressor Tup1p Mutant
Length = 92
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 59 ANDQNKVKELMDSIQQIGLQVP 80
+N QNK+ EL+D+I+Q LQV
Sbjct: 6 SNTQNKLNELLDAIRQEFLQVS 27
>pdb|3VP8|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Yeast
General Corepressor Tup1p
pdb|3VP8|B Chain B, Crystal Structure Of The N-Terminal Domain Of The Yeast
General Corepressor Tup1p
pdb|3VP8|C Chain C, Crystal Structure Of The N-Terminal Domain Of The Yeast
General Corepressor Tup1p
pdb|3VP8|D Chain D, Crystal Structure Of The N-Terminal Domain Of The Yeast
General Corepressor Tup1p
Length = 92
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 59 ANDQNKVKELMDSIQQIGLQVP 80
+N QNK+ EL+D+I+Q LQV
Sbjct: 6 SNTQNKLNELLDAIRQEFLQVS 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,170,298
Number of Sequences: 62578
Number of extensions: 105578
Number of successful extensions: 300
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 18
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)