Query 033111
Match_columns 127
No_of_seqs 196 out of 1200
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00470 ParB ParB-like nucl 99.9 7E-22 1.5E-26 132.7 8.1 80 44-124 2-82 (89)
2 PF02195 ParBc: ParB-like nucl 99.8 2.4E-21 5.3E-26 129.5 6.6 81 43-124 1-83 (90)
3 TIGR00180 parB_part ParB-like 99.8 2.4E-20 5.1E-25 141.2 9.3 84 40-123 3-90 (187)
4 TIGR03454 partition_RepB plasm 99.8 2.1E-19 4.6E-24 147.0 9.0 86 38-124 60-149 (325)
5 PRK13866 plasmid partitioning 99.7 4.2E-18 9.2E-23 139.7 8.7 87 38-125 61-152 (336)
6 PRK13832 plasmid partitioning 99.7 6.5E-18 1.4E-22 144.3 9.2 81 41-121 2-87 (520)
7 COG1475 Spo0J Stage 0 sporulat 99.7 6.1E-18 1.3E-22 129.8 8.0 81 40-123 2-83 (240)
8 TIGR03764 ICE_PFGI_1_parB inte 99.7 3E-17 6.4E-22 130.5 8.2 81 40-121 6-97 (258)
9 TIGR03734 PRTRC_parB PRTRC sys 99.7 1.1E-16 2.4E-21 138.3 9.5 75 50-124 2-80 (554)
10 PRK13698 plasmid-partitioning 99.6 1.6E-15 3.4E-20 123.9 9.2 80 44-124 61-147 (323)
11 KOG3388 Predicted transcriptio 99.4 9.9E-13 2.1E-17 94.1 8.4 121 1-126 1-127 (136)
12 COG5119 Uncharacterized protei 99.1 4E-11 8.8E-16 83.4 4.1 86 39-126 7-112 (119)
13 PF08857 ParBc_2: Putative Par 97.0 0.0026 5.6E-08 47.9 6.5 76 42-118 2-86 (163)
14 PF03235 DUF262: Protein of un 96.0 0.016 3.6E-07 43.0 5.4 53 53-105 16-74 (221)
15 PF14072 DndB: DNA-sulfur modi 95.4 0.12 2.5E-06 42.1 8.5 65 58-122 43-144 (346)
16 PF06245 DUF1015: Protein of u 94.2 0.082 1.8E-06 44.8 4.9 52 61-124 187-253 (416)
17 TIGR03187 DGQHR DGQHR domain. 89.2 0.71 1.5E-05 37.0 4.6 59 58-116 40-127 (271)
18 TIGR03233 DNA_S_dndB DNA sulfu 85.2 1.6 3.4E-05 36.7 4.6 58 58-115 47-138 (355)
19 COG4318 Uncharacterized protei 74.4 4.7 0.0001 31.4 3.7 79 39-118 21-107 (221)
20 COG4198 Uncharacterized conser 71.1 2.2 4.8E-05 36.0 1.3 19 89-107 204-222 (405)
21 COG4837 Uncharacterized protei 61.7 17 0.00038 25.3 4.0 39 61-102 57-95 (106)
22 PF11760 CbiG_N: Cobalamin syn 47.8 21 0.00047 23.9 2.7 36 63-98 23-60 (84)
23 COG1479 Uncharacterized conser 47.3 58 0.0013 26.2 5.7 48 59-106 30-87 (409)
24 PRK14835 undecaprenyl pyrophos 41.0 41 0.00089 27.3 3.8 27 90-116 46-95 (275)
25 PF04015 DUF362: Domain of unk 40.8 1.3E+02 0.0029 22.3 6.4 47 59-110 19-65 (206)
26 PF07315 DUF1462: Protein of u 37.1 64 0.0014 22.2 3.7 37 63-102 52-88 (93)
27 PF12647 RNHCP: RNHCP domain; 29.8 57 0.0012 22.4 2.5 19 75-93 48-67 (92)
28 TIGR03757 conj_TIGR03757 integ 28.4 39 0.00084 24.0 1.6 25 92-116 67-91 (113)
29 PF08952 DUF1866: Domain of un 26.7 2.1E+02 0.0046 21.2 5.3 47 59-107 44-92 (146)
30 PF07511 DUF1525: Protein of u 25.8 35 0.00075 24.2 0.9 25 92-116 66-90 (114)
31 PRK14833 undecaprenyl pyrophos 24.0 39 0.00084 26.7 1.0 12 90-101 9-20 (233)
32 PF02391 MoaE: MoaE protein; 23.1 1.8E+02 0.0039 20.2 4.2 45 60-105 53-106 (117)
33 PRK14831 undecaprenyl pyrophos 22.0 44 0.00096 26.6 1.0 11 90-100 25-35 (249)
34 PRK14838 undecaprenyl pyrophos 21.5 45 0.00098 26.5 0.9 12 90-101 15-26 (242)
35 PRK14841 undecaprenyl pyrophos 21.2 48 0.001 26.2 1.0 12 90-101 8-19 (233)
36 PRK14842 undecaprenyl pyrophos 21.0 47 0.001 26.5 0.9 13 90-102 13-25 (241)
37 PRK14829 undecaprenyl pyrophos 20.8 47 0.001 26.4 0.9 12 90-101 19-30 (243)
38 PRK14834 undecaprenyl pyrophos 20.6 54 0.0012 26.2 1.2 14 90-103 19-32 (249)
39 PF12646 DUF3783: Domain of un 20.2 1.5E+02 0.0032 18.0 2.9 24 59-82 8-31 (58)
40 PF09601 DUF2459: Protein of u 20.2 3.8E+02 0.0082 20.0 7.4 51 59-109 97-163 (173)
No 1
>smart00470 ParB ParB-like nuclease domain. Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.
Probab=99.87 E-value=7e-22 Score=132.74 Aligned_cols=80 Identities=33% Similarity=0.439 Sum_probs=73.5
Q ss_pred EeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcCCCeeeEEEEeCCHHHH
Q 033111 44 ELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETL 122 (127)
Q Consensus 44 ~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~d~e~ 122 (127)
+||+++|.+ +.|+|.. +++++++|++||++.|+++||+|.+.+|.|+|++||||++|++.+|+++|||.+.+.+++++
T Consensus 2 ~i~i~~i~~~~~n~r~~-~~~~~~~l~~si~~~G~~~Pi~v~~~~g~~~vidG~~R~~A~~~lg~~~ip~~v~~~~~~~a 80 (89)
T smart00470 2 EVPIEKLRPNPDQPRLT-SEESLEELAESIKENGLLQPIIVRPNDGRYEIIDGERRLRAAKLLGLKEVPVIVRDLDDEEA 80 (89)
T ss_pred cccHHHeecCCCCCCcC-CHHHHHHHHHHHHHhCCccCeEEEecCCcEEEEeCHHHHHHHHHcCCCceeEEEEcCCHHHH
Confidence 689999997 7777665 89999999999999999999999998888999999999999999999999999999998776
Q ss_pred hc
Q 033111 123 RH 124 (127)
Q Consensus 123 r~ 124 (127)
..
T Consensus 81 ~~ 82 (89)
T smart00470 81 IA 82 (89)
T ss_pred HH
Confidence 54
No 2
>PF02195 ParBc: ParB-like nuclease domain; InterPro: IPR003115 Proteins containing this domain, appear to be related to the Escherichia coli plasmid protein ParB, which preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.; GO: 0003677 DNA binding; PDB: 1VK1_A 3CYI_A 1YZS_A 2RII_X 2B6F_A 3HY2_Y 1XW4_X 1XW3_A 1VZ0_G 1R71_C ....
Probab=99.85 E-value=2.4e-21 Score=129.52 Aligned_cols=81 Identities=33% Similarity=0.468 Sum_probs=68.5
Q ss_pred EEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeC-CeEEEEechHHHHHHHHcCCCeeeEEEEeCCHH
Q 033111 43 LELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVD-GNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKE 120 (127)
Q Consensus 43 ~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~-g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~d~ 120 (127)
++||+++|.+ +.++|.. +++++++|++||+++|+++||+|.+.+ |.|.|++||||++|++.+|+++|||.+.+.+++
T Consensus 1 ~~v~~~~l~~~~~~~r~~-~~~~~~~l~~si~~~G~~~Pi~v~~~~~~~~~IidG~~R~~A~~~lg~~~i~v~v~~~~~~ 79 (90)
T PF02195_consen 1 VEVPISKLKPSPDNPRKD-DPEKIEELAESIKENGQLQPIIVRRRNDGKYEIIDGHHRLRAARELGLETIPVIVVDVDDE 79 (90)
T ss_dssp EEEEGGGEE-SBS-HHHH-HHHHHHHHHHHHHHHGCSS-EEEEEECTCEEEEEE-HHHHHHHHHHT-SEEEEEEEECTHH
T ss_pred CeEeHHHCCCCCCCCCCC-CHHHHHHHHHHHHhcCCCCCcEEEeecccCCcCCCCHHHHHHHHHcCCCeEeEEEEECCHH
Confidence 5799999997 6666544 789999999999999999999999994 899999999999999999999999999999977
Q ss_pred HHhc
Q 033111 121 TLRH 124 (127)
Q Consensus 121 e~r~ 124 (127)
++..
T Consensus 80 ~~~~ 83 (90)
T PF02195_consen 80 EAIA 83 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 3
>TIGR00180 parB_part ParB-like partition proteins. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.
Probab=99.83 E-value=2.4e-20 Score=141.18 Aligned_cols=84 Identities=27% Similarity=0.400 Sum_probs=77.5
Q ss_pred CcEEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeC---CeEEEEechHHHHHHHHcCCCeeeEEEE
Q 033111 40 PVILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVD---GNYYGFSGCHRYEAHQRLGLPTIRCKVR 115 (127)
Q Consensus 40 ~~i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~---g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~ 115 (127)
..+.+||+++|.+ +.|+|+.++++.+++|++||++.|+++||+|++.+ |+|+|++||||++|++.+|+++|||+|.
T Consensus 3 ~~~~~ip~~~l~~~~~n~R~~~~~~~i~~L~~SI~~~G~~~Pi~V~~~~~~~g~y~ii~G~rR~~A~~~lg~~~ip~~v~ 82 (187)
T TIGR00180 3 EGLIEIDIDLLQPNPYQPRKDFSEESLAELIESIKEQGQLQPILVRKHPDQPGRYEIIAGERRWRAAKLAGLKTIPAIVR 82 (187)
T ss_pred CeeEEeeHHHccCCCCCCCCCCCHHHHHHHHHHHHHhCCccCeEEEECCCCCCCEEEEcCHHHHHHHHHcCCCceeEEEe
Confidence 4578999999998 88888888999999999999999999999999875 7999999999999999999999999999
Q ss_pred eCCHHHHh
Q 033111 116 RGTKETLR 123 (127)
Q Consensus 116 d~~d~e~r 123 (127)
+.++++..
T Consensus 83 ~~~~~~~~ 90 (187)
T TIGR00180 83 ELDDEQML 90 (187)
T ss_pred cCCHHHHH
Confidence 98887653
No 4
>TIGR03454 partition_RepB plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently.
Probab=99.80 E-value=2.1e-19 Score=146.98 Aligned_cols=86 Identities=29% Similarity=0.370 Sum_probs=78.8
Q ss_pred CCCcEEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEe---CCeEEEEechHHHHHHHHcCCCeeeEE
Q 033111 38 SGPVILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEV---DGNYYGFSGCHRYEAHQRLGLPTIRCK 113 (127)
Q Consensus 38 ~~~~i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~---~g~y~Ii~G~rRl~Aak~LG~~~Ip~i 113 (127)
++..+++||++.|.+ +.++|..++++.+++|++||+++||++||+|+++ +|+|+|++|||||+||+.||+ +|+|+
T Consensus 60 ~g~~v~eldp~~I~~s~~~dR~~~d~~~~~eL~~SIr~~Gq~~PIlVR~~p~~~grY~ii~G~RRlrA~r~lG~-~V~Ai 138 (325)
T TIGR03454 60 EGETVVELDPALIDPSFVRDRLDSDDEAFADLVESIRENGQQVPILVRPHPEAEGRYQIAYGHRRLRAARELGR-PVKAV 138 (325)
T ss_pred CCCceEEeCHHHcCCCCCCCCCCCCHHHHHHHHHHHHHhCCcCCeEEEECCCCCCCEEEEeCHHHHHHHHHcCC-CCcEE
Confidence 477899999999998 7777777899999999999999999999999987 378999999999999999999 69999
Q ss_pred EEeCCHHHHhc
Q 033111 114 VRRGTKETLRH 124 (127)
Q Consensus 114 V~d~~d~e~r~ 124 (127)
|.+++|+++.+
T Consensus 139 Vr~lsD~e~~~ 149 (325)
T TIGR03454 139 VRELSDEELVI 149 (325)
T ss_pred EeCCCHHHHHH
Confidence 99999988654
No 5
>PRK13866 plasmid partitioning protein RepB; Provisional
Probab=99.75 E-value=4.2e-18 Score=139.69 Aligned_cols=87 Identities=30% Similarity=0.321 Sum_probs=76.5
Q ss_pred CCCcEEEeeCCCccC-CCCCCCCCC-HHHHHHHHHHHHhcCcccceEEEEe---CCeEEEEechHHHHHHHHcCCCeeeE
Q 033111 38 SGPVILELPLDKIRR-PLMRTRAND-QNKVKELMDSIQQIGLQVPIDVIEV---DGNYYGFSGCHRYEAHQRLGLPTIRC 112 (127)
Q Consensus 38 ~~~~i~~Ipi~~I~~-~~~~rr~~~-~~~i~~La~SI~~~G~l~PIvV~~~---~g~y~Ii~G~rRl~Aak~LG~~~Ip~ 112 (127)
.|..|++|+++.|.+ +.+.|...+ ++++++|++||+++||++||+|+++ +|+|+|++|||||+||+.||.+ |||
T Consensus 61 ~g~~v~eid~~~I~~s~~~dRl~~d~d~~~~eL~~SI~~~Gq~~PIlVRp~p~~~grY~li~G~RR~rA~~~lg~~-v~A 139 (336)
T PRK13866 61 AGEAVVSLDPSMIDGSPIADRLPADVDPKFEQLEASISQEGQQVPILVRPHPEAAGRYQIVYGRRRLRAAVNLRRE-VSA 139 (336)
T ss_pred CCCeEEEeCHHHccCCcCCCCcCCCccHHHHHHHHHHHHhCCcCCeEEEECCCCCCCEEEEecHHHHHHHHHcCCC-CCE
Confidence 677899999999999 566665554 4789999999999999999999997 3799999999999999999965 999
Q ss_pred EEEeCCHHHHhcc
Q 033111 113 KVRRGTKETLRHH 125 (127)
Q Consensus 113 iV~d~~d~e~r~y 125 (127)
+|.+++|+++.++
T Consensus 140 iVr~l~D~~~~~~ 152 (336)
T PRK13866 140 IVRNLTDRELVVA 152 (336)
T ss_pred EEecCCHHHHHHH
Confidence 9999999987653
No 6
>PRK13832 plasmid partitioning protein; Provisional
Probab=99.74 E-value=6.5e-18 Score=144.33 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=73.0
Q ss_pred cEEEeeCCCccC-CCCCCCCC-CHHHHHHHHHHHHhcCcccceEEEEe-CC--eEEEEechHHHHHHHHcCCCeeeEEEE
Q 033111 41 VILELPLDKIRR-PLMRTRAN-DQNKVKELMDSIQQIGLQVPIDVIEV-DG--NYYGFSGCHRYEAHQRLGLPTIRCKVR 115 (127)
Q Consensus 41 ~i~~Ipi~~I~~-~~~~rr~~-~~~~i~~La~SI~~~G~l~PIvV~~~-~g--~y~Ii~G~rRl~Aak~LG~~~Ip~iV~ 115 (127)
++.+||+++|.+ +.|+|+.+ +++.+++|++||+++|++|||+|++. +| .|+|++|||||+|++.+|+++|||+|.
T Consensus 2 ~L~~Id~~~L~~nP~NpRr~~~~~e~I~ELAaSIr~~GLLQPIiVRp~~dg~g~YeIIAGeRRlrAa~~aGl~~IPviV~ 81 (520)
T PRK13832 2 ELRKVDPRALKDNPDNTRRSKSSPQSDALLLATIKAVGIVQPPVVSPEEDGGNGYIIQAGHRRVKQAIAAGLEEIEVLVT 81 (520)
T ss_pred eeEEecHHHCCcCCCCCCCCCCCHHHHHHHHHHHHHhCCccCcEEEecCCCCccEEEccCHHHHHHHHHCCCCeeeEEEE
Confidence 588999999998 78888865 56899999999999999999999986 34 799999999999999999999999999
Q ss_pred eCCHHH
Q 033111 116 RGTKET 121 (127)
Q Consensus 116 d~~d~e 121 (127)
+.++++
T Consensus 82 d~dDd~ 87 (520)
T PRK13832 82 EAANDN 87 (520)
T ss_pred eCCcHH
Confidence 887654
No 7
>COG1475 Spo0J Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]
Probab=99.74 E-value=6.1e-18 Score=129.76 Aligned_cols=81 Identities=31% Similarity=0.399 Sum_probs=73.0
Q ss_pred CcEEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcCCCeeeEEEEeCC
Q 033111 40 PVILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGT 118 (127)
Q Consensus 40 ~~i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~ 118 (127)
..+..+++..|.. +.++|..++++.+++|+.||+++|+++||+|++ +|+|++|||||+|++.+|+++|||+|.+.+
T Consensus 2 ~~~~~~~~~~i~~~~~~~r~~~~~~~~~~l~~SI~~~G~~~Pi~v~~---~yeiv~G~rR~~Aa~~~g~~~vp~iv~~~~ 78 (240)
T COG1475 2 GRVVEIDIVLIAPNPLQPRKKFDEESLEELAASIKEFGLIQPIVVRP---RYEIVDGHRRLRAAKLLGLEEVPVIVRDLE 78 (240)
T ss_pred CcceecCHHHcCCCCCCCCccCCHHHHHHHHHHHHHhCCcCCeeEee---ceEeeechHHHHHHHHhCCCcCCeEEEECC
Confidence 3467788899998 777777789999999999999999999999998 899999999999999999999999999988
Q ss_pred HHHHh
Q 033111 119 KETLR 123 (127)
Q Consensus 119 d~e~r 123 (127)
+.++.
T Consensus 79 d~~~~ 83 (240)
T COG1475 79 DEKLL 83 (240)
T ss_pred HHHHH
Confidence 66554
No 8
>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.
Probab=99.71 E-value=3e-17 Score=130.49 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=70.5
Q ss_pred CcEEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeC--CeEEEEe-chHHHHHHHHcCCC-------
Q 033111 40 PVILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVD--GNYYGFS-GCHRYEAHQRLGLP------- 108 (127)
Q Consensus 40 ~~i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~--g~y~Ii~-G~rRl~Aak~LG~~------- 108 (127)
...+.||+++|.| +.|||+.++++ +++|++||+++|+++||+|++.+ .+|+|++ ||+||+|++.||.+
T Consensus 6 ~~~~~l~Id~I~Pn~~qPR~~fd~~-l~eLa~SIre~Gl~qPI~Vr~~p~~~~Yii~~GG~rRl~AlkeL~~et~~~r~~ 84 (258)
T TIGR03764 6 DTPMVLTLDQLRPYEDNPRTTRNPK-YDEIKASIRERGLDQPPKVTRRPGESDYIIRNGGNTRLQILKELWQETGDERFF 84 (258)
T ss_pred CceEEEEHHHcccCCCCCCCCCCHH-HHHHHHHHHHhCCcCCeEEEecCCCCcEEEeeCccHHHHHHHHHHHHHhhccCc
Confidence 4578899999999 88888777766 99999999999999999999863 2588887 79999999888865
Q ss_pred eeeEEEEeCCHHH
Q 033111 109 TIRCKVRRGTKET 121 (127)
Q Consensus 109 ~Ip~iV~d~~d~e 121 (127)
+|||+|.+.++++
T Consensus 85 ~Ipaivr~~~~~~ 97 (258)
T TIGR03764 85 RIHCLFKPWPGEL 97 (258)
T ss_pred eeeEEEEeCCcHH
Confidence 8999999998655
No 9
>TIGR03734 PRTRC_parB PRTRC system ParB family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family the member related to ParB, and is designated PRTRC system ParB family protein.
Probab=99.68 E-value=1.1e-16 Score=138.29 Aligned_cols=75 Identities=27% Similarity=0.238 Sum_probs=68.5
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeC-Ce-EEEEechHHHHHHHHcCCCe--eeEEEEeCCHHHHhc
Q 033111 50 IRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVD-GN-YYGFSGCHRYEAHQRLGLPT--IRCKVRRGTKETLRH 124 (127)
Q Consensus 50 I~~~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~-g~-y~Ii~G~rRl~Aak~LG~~~--Ip~iV~d~~d~e~r~ 124 (127)
|.+..|||+.++++.+++|++||+++|++|||+|++.+ |. |+|++|+|||+|++.||.++ |||+|.+.+|+++..
T Consensus 2 i~~~~NPRk~~d~~~IeELA~SIr~~GlLQPIlVRp~~~g~~YeVIAGeRRlrAak~Lg~~~~~IPviV~~~~D~eA~~ 80 (554)
T TIGR03734 2 IVPGNNPRRYFDPAEMAELVESIRAKGVLQPILVRPVPGSDLYEVVAGERRYRAALEVFGEDYDIPALIKVLTDEEAEA 80 (554)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCccCeEEEEcCCCCcEEEeeCHHHHHHHHHcCCccCCceEEEecCCHHHHHH
Confidence 56688999999999999999999999999999999874 45 99999999999999999988 999999999887754
No 10
>PRK13698 plasmid-partitioning protein; Provisional
Probab=99.62 E-value=1.6e-15 Score=123.94 Aligned_cols=80 Identities=18% Similarity=0.093 Sum_probs=70.0
Q ss_pred EeeCCCcc----C-CCCCCC--CCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcCCCeeeEEEEe
Q 033111 44 ELPLDKIR----R-PLMRTR--ANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRR 116 (127)
Q Consensus 44 ~Ipi~~I~----~-~~~~rr--~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d 116 (127)
.||-++|. . ..|+|. .++++.+.+|++||+++|+++||+|++.+|.|+||+|.|||+||+.+| .+|||+|.+
T Consensus 61 ~i~~~~ve~~T~V~~~N~R~Q~~f~e~sL~dL~~SIk~~G~~qPiivR~~~g~yEIIaGeRR~rAa~lag-~~i~alV~d 139 (323)
T PRK13698 61 VIRGDSVEKTSRVWSGNERDQELLTEDSLDDLIPSFLLTGQQTPAFGRRVSGVIEIADGSRRRKAAILTE-SDYRVLVGE 139 (323)
T ss_pred EcCHHHhhhheeecccCCcchhhCCHHHHHHHHHHHHHhCCCcCeEEEEeCCeEEEEechHHHHHHHHhC-CCceEEEEe
Confidence 46666664 3 556654 689999999999999999999999999888999999999999999999 889999999
Q ss_pred CCHHHHhc
Q 033111 117 GTKETLRH 124 (127)
Q Consensus 117 ~~d~e~r~ 124 (127)
++|+++..
T Consensus 140 l~de~a~~ 147 (323)
T PRK13698 140 LDDEQMAA 147 (323)
T ss_pred CCHHHHHH
Confidence 99998753
No 11
>KOG3388 consensus Predicted transcription regulator/nuclease, contains ParB domain [Replication, recombination and repair]
Probab=99.42 E-value=9.9e-13 Score=94.07 Aligned_cols=121 Identities=54% Similarity=0.794 Sum_probs=84.4
Q ss_pred CcceeeeecCCCcccchhhhhhccC-CCCCCCC-CCCCCCCCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhcCcc
Q 033111 1 MANFVVQLPKTNSFNLKRFCVSASS-NGNPPGS-SESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ 78 (127)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~G~l 78 (127)
|||...|||- .++-|+.|+.| .|.++.. +..+....-...+++.+|++--..+ .-++....+.+++|++-|.+
T Consensus 1 ~~~~~~r~~~----s~~s~~~S~~S~s~~~pv~~~mSei~rPi~pvLd~qKi~slm~Tm-kn~~~c~les~d~~~~aGel 75 (136)
T KOG3388|consen 1 MANLMMRLPI----SLRSFSTSAHSSSGSPPVEGPMSEIVRPIPPVLDLQKIRSLMETM-KNDQNCVLESEDSIRQAGEL 75 (136)
T ss_pred Cchhhhhcch----hhhhheeehhccCCCCceecchhhcccCCCcccCHHHHHHHHHHh-cCCCccchhhHHHHHhcCCC
Confidence 6777777774 47888888664 4455542 2233334444445555554200000 11222455667788889999
Q ss_pred cceEEEEeC--C--eEEEEechHHHHHHHHcCCCeeeEEEEeCCHHHHhccc
Q 033111 79 VPIDVIEVD--G--NYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHL 126 (127)
Q Consensus 79 ~PIvV~~~~--g--~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~d~e~r~y~ 126 (127)
.||-|-..+ | -|+-..|+||++|.+++|.++|.|.++..+.+++|.||
T Consensus 76 pPiDvl~v~~~G~~~YyaFgGCHRleAhdrlgrptiRcKlvk~T~~tLr~yl 127 (136)
T KOG3388|consen 76 PPIDVLEVDSEGGDYYYAFGGCHRLEAHDRLGRPTIRCKLVKGTPETLRYYL 127 (136)
T ss_pred CCceEEEEecCCceEEEeeCcchhhHHHHhhCCCceeEEEecCCHHHHHHHh
Confidence 999887763 4 68899999999999999999999999999999999997
No 12
>COG5119 Uncharacterized protein, contains ParB-like nuclease domain [General function prediction only]
Probab=99.15 E-value=4e-11 Score=83.45 Aligned_cols=86 Identities=48% Similarity=0.731 Sum_probs=72.4
Q ss_pred CCcEEEeeCCCccCCCCCCCCCCHHHHHHHHH---------------HHHhcCcccceEEE--EeCCe--EEEEechHHH
Q 033111 39 GPVILELPLDKIRRPLMRTRANDQNKVKELMD---------------SIQQIGLQVPIDVI--EVDGN--YYGFSGCHRY 99 (127)
Q Consensus 39 ~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~---------------SI~~~G~l~PIvV~--~~~g~--y~Ii~G~rRl 99 (127)
...+++||+++|+.|..+ .+|+.+++.+++ ++.+-|.+.||-|- +.+|. |+-..|+||+
T Consensus 7 sv~~~EiplseirRPlpp--vlDp~Kv~am~~tM~g~t~~~sc~l~e~~a~aGelpPvDVL~~~v~Gq~~YyaFgGCHRl 84 (119)
T COG5119 7 SVNIQEIPLSEIRRPLPP--VLDPNKVNAMMETMTGKTPPASCGLTEEDAAAGELPPVDVLTFEVDGQPYYYAFGGCHRL 84 (119)
T ss_pred CccceeccHHHhhcCCCC--CCCHHHHHHHHHHhcCCCCCccccchHhHHhcCCCCCceeEEEEecCcEEEEeeCccHHh
Confidence 367899999999986655 689999999955 45778999999887 55776 9999999999
Q ss_pred HHHHHcCCCeeeEE-EEeCCHHHHhccc
Q 033111 100 EAHQRLGLPTIRCK-VRRGTKETLRHHL 126 (127)
Q Consensus 100 ~Aak~LG~~~Ip~i-V~d~~d~e~r~y~ 126 (127)
+|+.++|.++|.|. +.......+|+||
T Consensus 85 ~A~dr~gret~~a~rvr~~P~t~lrmyL 112 (119)
T COG5119 85 EACDRAGRETILAKRVRCAPNTVLRMYL 112 (119)
T ss_pred HHHHHHhHHHHHHHHHccChHHHHHHHH
Confidence 99999999999995 5566666799998
No 13
>PF08857 ParBc_2: Putative ParB-like nuclease; InterPro: IPR014956 These proteins are probably distantly related to IPR003115 from INTERPRO. Suggesting these, uncharacterised proteins have a nuclease function. ; PDB: 2HWJ_E.
Probab=97.01 E-value=0.0026 Score=47.89 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=38.6
Q ss_pred EEEeeCCCccCCCCCCCCCCH--HHHHHHHHHHHh--cCcc--cceEEEEe-CCeEEEEechHHHHHHHHcCCCe-eeEE
Q 033111 42 ILELPLDKIRRPLMRTRANDQ--NKVKELMDSIQQ--IGLQ--VPIDVIEV-DGNYYGFSGCHRYEAHQRLGLPT-IRCK 113 (127)
Q Consensus 42 i~~Ipi~~I~~~~~~rr~~~~--~~i~~La~SI~~--~G~l--~PIvV~~~-~g~y~Ii~G~rRl~Aak~LG~~~-Ip~i 113 (127)
+.+|+|++|+|. |.--.+++ .+...++...++ .-++ +||.|.-- +|.++++||||+.+|+..+|... |++.
T Consensus 2 l~~v~i~~LrPT-Q~~vG~~eV~~K~~~~~~~~~~~~~~~l~~~~vpvViGP~g~lyl~D~HH~~~Al~e~~~~~~v~v~ 80 (163)
T PF08857_consen 2 LIEVPIADLRPT-QMTVGMDEVYYKLGRYRRDSKKKFDDYLEKHPVPVVIGPGGQLYLTDHHHLLRALWEMGVGGTVPVR 80 (163)
T ss_dssp -EEEEGGGCB-S-BSEE-HHHHHHHHHHHHT---------TT-BEEEEEE-STT-EEE-S-HHHHHHHHHTT--E-EEEE
T ss_pred ceEeEHHHcCCc-hHhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCEEECCCCCeEEECCcHHHHHHHHcCCCceeEEE
Confidence 678999999983 22111111 222222222221 1123 45544433 56899999999999999999998 9998
Q ss_pred EE-eCC
Q 033111 114 VR-RGT 118 (127)
Q Consensus 114 V~-d~~ 118 (127)
|+ +++
T Consensus 81 V~~dls 86 (163)
T PF08857_consen 81 VVADLS 86 (163)
T ss_dssp EEEE-T
T ss_pred Eehhcc
Confidence 77 555
No 14
>PF03235 DUF262: Protein of unknown function DUF262; InterPro: IPR004919 This entry is found in prokaryotic proteins of unknown function.
Probab=96.03 E-value=0.016 Score=42.98 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=40.8
Q ss_pred CCCCCCCCCHHHHHHHHHHH--HhcCcccceEEEEe----CCeEEEEechHHHHHHHHc
Q 033111 53 PLMRTRANDQNKVKELMDSI--QQIGLQVPIDVIEV----DGNYYGFSGCHRYEAHQRL 105 (127)
Q Consensus 53 ~~~~rr~~~~~~i~~La~SI--~~~G~l~PIvV~~~----~g~y~Ii~G~rRl~Aak~L 105 (127)
.+|..-..+++++.+|.+|| ...=.+-+|++... .+.|.|+||..|+.++..+
T Consensus 16 ~yQR~yvW~~~~~~~Li~si~~~~~~~iG~i~~~~~~~~~~~~~~iiDGQQRLTTl~l~ 74 (221)
T PF03235_consen 16 DYQRDYVWDEEQIEELIDSILELRGYPIGSILLWSKNEDSNNTYEIIDGQQRLTTLYLF 74 (221)
T ss_pred CCCCCCccCHHHHHHHHHHHHhccCCccceEEEEeccccccceeeecCccHHHHHHHHH
Confidence 34433367999999999999 76667788888321 3679999999999998654
No 15
>PF14072 DndB: DNA-sulfur modification-associated
Probab=95.42 E-value=0.12 Score=42.13 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHhc--CcccceEEEEeC---------------------------CeEEEEechHHHHHHHHc---
Q 033111 58 RANDQNKVKELMDSIQQI--GLQVPIDVIEVD---------------------------GNYYGFSGCHRYEAHQRL--- 105 (127)
Q Consensus 58 r~~~~~~i~~La~SI~~~--G~l~PIvV~~~~---------------------------g~y~Ii~G~rRl~Aak~L--- 105 (127)
|.++...++++++-|.++ ..+.|+++.-.+ ....|+||.||+.|.+.+
T Consensus 43 R~l~~~rv~~I~~Yl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~L~i~~~~~~~iiDGQHRl~ai~~a~~~ 122 (346)
T PF14072_consen 43 RPLNKSRVKEIAEYLLENEDNFFFPIIVASIDGPVEFEPEFPEEEEGDGDVGVLEIPMDASLWIIDGQHRLAAIKEALEE 122 (346)
T ss_pred CCCCHHHHHHHHHHHHcCCCCeeccceeEeecCcccccccccccccCCCceEEEEECCCCeEEeeccHHHHHHHHHHHHh
Confidence 467888999999999653 445444432111 147899999999999877
Q ss_pred ----CCCeeeEEEE-eCCHHHH
Q 033111 106 ----GLPTIRCKVR-RGTKETL 122 (127)
Q Consensus 106 ----G~~~Ip~iV~-d~~d~e~ 122 (127)
+-.+|||.+. +.+.++.
T Consensus 123 ~~~l~~~~i~V~~~~~~~~~~~ 144 (346)
T PF14072_consen 123 DPELGDEEIPVVIFIDLDLEEQ 144 (346)
T ss_pred CccccCceeEEEEEcCCCHHHH
Confidence 2357999988 5555543
No 16
>PF06245 DUF1015: Protein of unknown function (DUF1015); InterPro: IPR008323 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.23 E-value=0.082 Score=44.75 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcC---------------CCeeeEEEEeCCHHHHhc
Q 033111 61 DQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLG---------------LPTIRCKVRRGTKETLRH 124 (127)
Q Consensus 61 ~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG---------------~~~Ip~iV~d~~d~e~r~ 124 (127)
+++.++++.+.+.+.+ ..+|.|||||++++..+. +..+-+.+.+.+|..+.+
T Consensus 187 d~~~i~~i~~~~~~~~------------~lyIADGHHR~atA~~~~~~~~~~~~~~~~~~p~~y~l~~l~~~~d~gL~I 253 (416)
T PF06245_consen 187 DPAVIAKIQEAFEADK------------PLYIADGHHRYATALAYREERKEQNPEHTGDEPYNYFLMYLVNFPDPGLRI 253 (416)
T ss_pred CHHHHHHHHHHHhhcC------------ceEEecCcHHHHHHHHHHHHHHhhCCCCCCCcCccEEEEEEeccCCCCCEE
Confidence 4455566665553322 356889999999998873 345777787777766654
No 17
>TIGR03187 DGQHR DGQHR domain. This highly divergent, uncharacterized domain has several absolutely conserved residues, including a QR pair and FxxxN motif. Its most striking feature, however, is a near invariant pentapeptide motif DGQHR. While the function is unknown, members occur in contexts that suggest extensive lateral gene transfer (LGT), and several have been annotated as putative bacteriophage proteins. The region described by this model is about 280 amino acids in length; additional sequences show local sequence similarity.
Probab=89.23 E-value=0.71 Score=36.97 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHh-cCcc-cceEEEEe---------------------CCeEEEEechHHHHHHHHcCC------C
Q 033111 58 RANDQNKVKELMDSIQQ-IGLQ-VPIDVIEV---------------------DGNYYGFSGCHRYEAHQRLGL------P 108 (127)
Q Consensus 58 r~~~~~~i~~La~SI~~-~G~l-~PIvV~~~---------------------~g~y~Ii~G~rRl~Aak~LG~------~ 108 (127)
|.++...++++++=|.. .+.+ .+|++.-. +....|+||.||+.|.+.+-. .
T Consensus 40 R~l~~~Rv~~I~~Yi~~~~~~~~~sIi~~i~~~~~f~~~~~~~~~g~L~Ip~~~~~~iiDGQHRl~gi~~a~~~~~~l~~ 119 (271)
T TIGR03187 40 RPLNKSRIKEIARYIDNPDAYIPPAITLSIDGSVEFEPLEGKNVVGTLEIPMDASAWIVDGQHRLAAIEDALKESPELAE 119 (271)
T ss_pred cchhHHHHHHHHHHHcCCCCEecccEEEEecCCceEEecCCCCcceEEEECCCCcEEEeccHHHHHHHHHHHhcCcccCc
Confidence 35677888888888853 3444 44555322 125778999999999876554 4
Q ss_pred eeeEEEEe
Q 033111 109 TIRCKVRR 116 (127)
Q Consensus 109 ~Ip~iV~d 116 (127)
+|||.+..
T Consensus 120 ~i~V~~~~ 127 (271)
T TIGR03187 120 TIPVVFFI 127 (271)
T ss_pred eEEEEEEe
Confidence 59999773
No 18
>TIGR03233 DNA_S_dndB DNA sulfur modification protein DndB. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=85.23 E-value=1.6 Score=36.72 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHh--cCccc-ceEE------------------------EEeCCeEEEEechHHHHHHHH------
Q 033111 58 RANDQNKVKELMDSIQQ--IGLQV-PIDV------------------------IEVDGNYYGFSGCHRYEAHQR------ 104 (127)
Q Consensus 58 r~~~~~~i~~La~SI~~--~G~l~-PIvV------------------------~~~~g~y~Ii~G~rRl~Aak~------ 104 (127)
|.+++..+.++++=|.+ ..++. +|++ .+.+....|+||.||..|...
T Consensus 47 R~ln~~Ri~eI~~Yil~n~~~~~fsaItasid~~v~f~~~~~~~~~~~~G~L~Ip~d~~~~I~DGQHR~~aI~~al~~~p 126 (355)
T TIGR03233 47 RILNEERIPEIANYILENRDSYVFSALTASIDGDIEFEPVGEDGSAQRLGTLRIDMDAKFLINDGQHRRAAIEEALKEDP 126 (355)
T ss_pred ccCCHhhHHHHHHHHHcCCcccccceEEEEEcCCcceeecccccccccccEEEeCCCceEEEeccHHHHHHHHHHHhhCc
Confidence 35677888888888843 33332 2222 111235789999999999964
Q ss_pred -cCCCeeeEEEE
Q 033111 105 -LGLPTIRCKVR 115 (127)
Q Consensus 105 -LG~~~Ip~iV~ 115 (127)
+|-.+|||.+.
T Consensus 127 el~~~~I~Vv~f 138 (355)
T TIGR03233 127 ELGDETIAVVFF 138 (355)
T ss_pred ccCCCceeEEEE
Confidence 44578999976
No 19
>COG4318 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.38 E-value=4.7 Score=31.40 Aligned_cols=79 Identities=22% Similarity=0.209 Sum_probs=51.0
Q ss_pred CCcEEEeeCCCccCCCCCCCCC--CHHHHHHHHHHHHhcCc--c--cceEEEEe-CCeEEEEechHHHHHHHHcCCC-ee
Q 033111 39 GPVILELPLDKIRRPLMRTRAN--DQNKVKELMDSIQQIGL--Q--VPIDVIEV-DGNYYGFSGCHRYEAHQRLGLP-TI 110 (127)
Q Consensus 39 ~~~i~~Ipi~~I~~~~~~rr~~--~~~~i~~La~SI~~~G~--l--~PIvV~~~-~g~y~Ii~G~rRl~Aak~LG~~-~I 110 (127)
...+.++||++|+|...+ ..+ -+.+-..|++.=.+.|. + .+|-|.-- +|+++|.|-||=.+|+..+|.+ .+
T Consensus 21 ~p~l~e~~i~~LrPTQit-VGm~eVe~kr~~la~~kpk~~~~fl~kh~iPvVlGPggr~YltDhHHL~~Al~~~gvk~g~ 99 (221)
T COG4318 21 VPSLCELPIAALRPTQIT-VGMREVELKRAKLAEKKPKDGEAFLGKHEIPVVLGPGGRFYLTDHHHLSRALLREGVKQGL 99 (221)
T ss_pred CCccccccHhhcCcccee-hhhhHHHHHHHHHHhhCcchHHHHhhcCCCCeEeCCCCceeeechHHHHHHHHHhCcccce
Confidence 467889999999984332 111 12333445554444552 2 45544433 4689999999999999999975 46
Q ss_pred eEEEEeCC
Q 033111 111 RCKVRRGT 118 (127)
Q Consensus 111 p~iV~d~~ 118 (127)
+.+|.+.+
T Consensus 100 ~~~va~~s 107 (221)
T COG4318 100 PVVVADLS 107 (221)
T ss_pred eEEEeccc
Confidence 66676654
No 20
>COG4198 Uncharacterized conserved protein [Function unknown]
Probab=71.08 E-value=2.2 Score=36.02 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.3
Q ss_pred eEEEEechHHHHHHHHcCC
Q 033111 89 NYYGFSGCHRYEAHQRLGL 107 (127)
Q Consensus 89 ~y~Ii~G~rRl~Aak~LG~ 107 (127)
.-+|.|||||.+|++..|+
T Consensus 204 ~lyIADGHHR~~aa~~V~~ 222 (405)
T COG4198 204 ALYIADGHHRAAAAKNVAL 222 (405)
T ss_pred ceEEccchHHHHHHHhhhh
Confidence 4678999999999988774
No 21
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.71 E-value=17 Score=25.30 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHH
Q 033111 61 DQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAH 102 (127)
Q Consensus 61 ~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aa 102 (127)
.+++..++++.|...-.+-|++|... =+|-.|+-|+.-.
T Consensus 57 ~e~~~~~~aekI~~dey~YPlivved---eiVaeGnprlKdi 95 (106)
T COG4837 57 LEDHDLQFAEKIEQDEYFYPLIVVED---EIVAEGNPRLKDI 95 (106)
T ss_pred cHHHHHHHHHHHhcccccceEEEEcc---eEeecCCchHHHH
Confidence 55778899999999999999999873 3688899987643
No 22
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=47.84 E-value=21 Score=23.95 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCcccceEEEEeCCeEE--EEechHH
Q 033111 63 NKVKELMDSIQQIGLQVPIDVIEVDGNYY--GFSGCHR 98 (127)
Q Consensus 63 ~~i~~La~SI~~~G~l~PIvV~~~~g~y~--Ii~G~rR 98 (127)
--++.++.-++....-.|++|...+|+|. +++||+=
T Consensus 23 ivvR~iap~l~dK~~DPaVvvvde~g~~vIplL~GH~G 60 (84)
T PF11760_consen 23 IVVRAIAPLLKDKDTDPAVVVVDEDGRFVIPLLGGHRG 60 (84)
T ss_dssp HHHHHHHHH---TTT--EEEEE-TT--EEEEEE-TTTT
T ss_pred HHHHHhChhhcccCCCCCEEEEeCCCCEEEEeccCCcc
Confidence 34667777777665556677766678887 6777753
No 23
>COG1479 Uncharacterized conserved protein [Function unknown]
Probab=47.31 E-value=58 Score=26.23 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhcCccc--------ceEEEEeC-Ce-EEEEechHHHHHHHHcC
Q 033111 59 ANDQNKVKELMDSIQQIGLQV--------PIDVIEVD-GN-YYGFSGCHRYEAHQRLG 106 (127)
Q Consensus 59 ~~~~~~i~~La~SI~~~G~l~--------PIvV~~~~-g~-y~Ii~G~rRl~Aak~LG 106 (127)
..+.+.++.|-++|....... .|+....+ +. |.|+||..|+...-.+-
T Consensus 30 ~W~~~~~~~L~~di~~~~~~~~~~~~f~g~i~~~~~~~~~~~~iiDGQQRlttl~~~~ 87 (409)
T COG1479 30 VWDEKNIEKLIDDLFESYPIGEEENHFLGSIVSIIEGIYSDLEIIDGQQRLTTLYLLL 87 (409)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCCCCeEEEEEEEecccCCcceeeecchHHHHHHHHHH
Confidence 568899999999998754443 45554442 33 48999999998876543
No 24
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.01 E-value=41 Score=27.29 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEEechHHH-----------------------HHHHHcCCCeeeEEEEe
Q 033111 90 YYGFSGCHRY-----------------------EAHQRLGLPTIRCKVRR 116 (127)
Q Consensus 90 y~Ii~G~rRl-----------------------~Aak~LG~~~Ip~iV~d 116 (127)
-+|.||++|| +.|..+|.+.|-+....
T Consensus 46 AiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS 95 (275)
T PRK14835 46 GLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFS 95 (275)
T ss_pred EEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 4799999998 45666777777776654
No 25
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=40.78 E-value=1.3e+02 Score=22.31 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcCCCee
Q 033111 59 ANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTI 110 (127)
Q Consensus 59 ~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG~~~I 110 (127)
..+++-++++.+.+++.|. .+|+|....+.. -..-.++++..|+..+
T Consensus 19 ~T~P~vv~avv~~l~~~g~-~~i~i~e~~~~~----~~~~~~~~~~~G~~~~ 65 (206)
T PF04015_consen 19 TTHPEVVRAVVEMLKEAGA-KEIIIAESPGSG----AADTREVFKRSGYEEI 65 (206)
T ss_pred cCCHHHHHHHHHHHHHcCC-CceEEEeCCCcc----hHhHHHHHHHcchhhH
Confidence 5688999999999999998 667776543211 2455666788887544
No 26
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=37.12 E-value=64 Score=22.20 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHH
Q 033111 63 NKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAH 102 (127)
Q Consensus 63 ~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aa 102 (127)
++-+++++.|.+.-++-|+++.. .=+|-.|+-|+...
T Consensus 52 ~~~~~~a~~I~ede~fYPlV~i~---~eiV~EGnp~LK~I 88 (93)
T PF07315_consen 52 DHDQQFAERILEDELFYPLVVIN---DEIVAEGNPQLKDI 88 (93)
T ss_dssp HHHHHHHHHHHTTSS-SSEEEET---TEEEEESS--HHHH
T ss_pred HHHHHHHHHHHhcccccceEEEC---CEEEecCCccHHHH
Confidence 56789999999999999999875 34688899988764
No 27
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=29.78 E-value=57 Score=22.41 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=16.0
Q ss_pred cCcccceEEEEe-CCeEEEE
Q 033111 75 IGLQVPIDVIEV-DGNYYGF 93 (127)
Q Consensus 75 ~G~l~PIvV~~~-~g~y~Ii 93 (127)
.|.++||-|... +|.|.|+
T Consensus 48 ~g~M~Pi~v~~~~~g~w~ii 67 (92)
T PF12647_consen 48 GGRMEPIAVWVRRDGEWMII 67 (92)
T ss_pred CCeeeEEEEEEEcCCCEEEE
Confidence 689999998876 5789887
No 28
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=28.35 E-value=39 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=18.1
Q ss_pred EEechHHHHHHHHcCCCeeeEEEEe
Q 033111 92 GFSGCHRYEAHQRLGLPTIRCKVRR 116 (127)
Q Consensus 92 Ii~G~rRl~Aak~LG~~~Ip~iV~d 116 (127)
|....+=+--+-.+|.+++|++|+|
T Consensus 67 l~~Ayqgv~~Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 67 LAQAYQGVADAWQLGVTKIPAVVVD 91 (113)
T ss_pred HHHHHHHHHHHHHcCCccCCEEEEc
Confidence 3334444555678999999999987
No 29
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=26.70 E-value=2.1e+02 Score=21.17 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhcCcccceEEEEeCCeEE--EEechHHHHHHHHcCC
Q 033111 59 ANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYY--GFSGCHRYEAHQRLGL 107 (127)
Q Consensus 59 ~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~--Ii~G~rRl~Aak~LG~ 107 (127)
.+++.-+.+|.+-+...| .+++|+..++..+ .-+|+.=+.|+..-|.
T Consensus 44 ~Fdd~l~~~ll~~~~~~G--evvLvRfv~~~mwVTF~dg~sALaals~dg~ 92 (146)
T PF08952_consen 44 SFDDNLMDELLQKFAQYG--EVVLVRFVGDTMWVTFRDGQSALAALSLDGI 92 (146)
T ss_dssp S--HHHHHHHHHHHHCCS---ECEEEEETTCEEEEESSCHHHHHHHHGCCS
T ss_pred cCCHHHHHHHHHHHHhCC--ceEEEEEeCCeEEEEECccHHHHHHHccCCc
Confidence 689999999999999999 6889988877655 4588888888888885
No 30
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.81 E-value=35 Score=24.23 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=20.8
Q ss_pred EEechHHHHHHHHcCCCeeeEEEEe
Q 033111 92 GFSGCHRYEAHQRLGLPTIRCKVRR 116 (127)
Q Consensus 92 Ii~G~rRl~Aak~LG~~~Ip~iV~d 116 (127)
|....+-+.-+-.+|.+++|++|.|
T Consensus 66 L~~Ayqgv~~Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 66 LAQAYQGVVDAWSLGITKYPAVVFD 90 (114)
T ss_pred HHHHHHHHHHHHHhCccccCEEEEc
Confidence 5566667777889999999999987
No 31
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.04 E-value=39 Score=26.74 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=9.6
Q ss_pred EEEEechHHHHH
Q 033111 90 YYGFSGCHRYEA 101 (127)
Q Consensus 90 y~Ii~G~rRl~A 101 (127)
-+|.||+|||..
T Consensus 9 aiImDGNrRwA~ 20 (233)
T PRK14833 9 AIIMDGNGRWAK 20 (233)
T ss_pred EEEccCCHHHHH
Confidence 379999999864
No 32
>PF02391 MoaE: MoaE protein; InterPro: IPR003448 This family contains the MoaE protein that is involved in biosynthesis of molybdopterin []. Molybdopterin, the universal component of the pterin molybdenum cofactors, contains a dithiolene group serving to bind Mo. Addition of the dithiolene sulphurs to a molybdopterin precursor requires the activity of the converting factor. Converting factor contains the MoaE and MoaD proteins.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2WP4_B 2OMD_B 1NVJ_E 1FM0_E 3BII_E 1NVI_E 1FMA_E 2QIE_K 2Q5W_E 3RPF_A ....
Probab=23.14 E-value=1.8e+02 Score=20.15 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHh-cCcccceEEEEe-C----C---eEEEEechHHHHHHHHc
Q 033111 60 NDQNKVKELMDSIQQ-IGLQVPIDVIEV-D----G---NYYGFSGCHRYEAHQRL 105 (127)
Q Consensus 60 ~~~~~i~~La~SI~~-~G~l~PIvV~~~-~----g---~y~Ii~G~rRl~Aak~L 105 (127)
+....++++++.+++ .|+.. +.|... + | -|+.++|-||-.|...+
T Consensus 53 ma~~~l~~I~~e~~~~~~~~~-v~i~HR~G~l~vGe~~v~V~vsa~hR~eaf~A~ 106 (117)
T PF02391_consen 53 MAEKELEEIAEEARERFGIVD-VAIVHRVGRLKVGEPIVLVAVSAPHRKEAFEAC 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHSTTCE-EEEEEEEEEEETTSEEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeE-EEEEEeeCCCCCCCeEEEEEEecCCHHHHHHHH
Confidence 345788888888885 56656 555543 2 3 48899999999988764
No 33
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.04 E-value=44 Score=26.64 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=9.5
Q ss_pred EEEEechHHHH
Q 033111 90 YYGFSGCHRYE 100 (127)
Q Consensus 90 y~Ii~G~rRl~ 100 (127)
-+|.||+|||.
T Consensus 25 aiImDGNrRwA 35 (249)
T PRK14831 25 AVIMDGNGRWA 35 (249)
T ss_pred EEecCCcHHHH
Confidence 47999999995
No 34
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.53 E-value=45 Score=26.51 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=9.9
Q ss_pred EEEEechHHHHH
Q 033111 90 YYGFSGCHRYEA 101 (127)
Q Consensus 90 y~Ii~G~rRl~A 101 (127)
-+|.||+|||.-
T Consensus 15 AiImDGNrRwA~ 26 (242)
T PRK14838 15 AIIMDGNGRWAK 26 (242)
T ss_pred EEeccCCHHHHH
Confidence 479999999953
No 35
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.25 E-value=48 Score=26.21 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=9.7
Q ss_pred EEEEechHHHHH
Q 033111 90 YYGFSGCHRYEA 101 (127)
Q Consensus 90 y~Ii~G~rRl~A 101 (127)
-+|.||++||.-
T Consensus 8 aiImDGNrRwAk 19 (233)
T PRK14841 8 AIIMDGNGRWAK 19 (233)
T ss_pred EEEccCCHHHHH
Confidence 379999999953
No 36
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.98 E-value=47 Score=26.46 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=10.1
Q ss_pred EEEEechHHHHHH
Q 033111 90 YYGFSGCHRYEAH 102 (127)
Q Consensus 90 y~Ii~G~rRl~Aa 102 (127)
-+|.||++||...
T Consensus 13 aiImDGNrRwAk~ 25 (241)
T PRK14842 13 AVIMDGNGRWAES 25 (241)
T ss_pred EEEcCCCHHHHHH
Confidence 4799999999643
No 37
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.79 E-value=47 Score=26.36 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=9.8
Q ss_pred EEEEechHHHHH
Q 033111 90 YYGFSGCHRYEA 101 (127)
Q Consensus 90 y~Ii~G~rRl~A 101 (127)
-+|.||+|||.-
T Consensus 19 aiImDGNrRwAk 30 (243)
T PRK14829 19 AVVMDGNGRWAT 30 (243)
T ss_pred EEecCCCHHHHH
Confidence 479999999953
No 38
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.58 E-value=54 Score=26.20 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=10.8
Q ss_pred EEEEechHHHHHHH
Q 033111 90 YYGFSGCHRYEAHQ 103 (127)
Q Consensus 90 y~Ii~G~rRl~Aak 103 (127)
-+|+||++||.-.+
T Consensus 19 AiImDGNrRwAk~~ 32 (249)
T PRK14834 19 AIIMDGNGRWAKAR 32 (249)
T ss_pred EEEecCchHHHHHC
Confidence 47999999995443
No 39
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.23 E-value=1.5e+02 Score=18.02 Aligned_cols=24 Identities=13% Similarity=0.574 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHhcCcccceE
Q 033111 59 ANDQNKVKELMDSIQQIGLQVPID 82 (127)
Q Consensus 59 ~~~~~~i~~La~SI~~~G~l~PIv 82 (127)
.++.+++..+...+++.|+-.|+-
T Consensus 8 g~~~~el~~~l~~~r~~~~~~~~k 31 (58)
T PF12646_consen 8 GFSGEELDKFLDALRKAGIPIPLK 31 (58)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceE
Confidence 467889999999999999955553
No 40
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=20.22 E-value=3.8e+02 Score=20.02 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhcC----cccceEEEE----------eCCeEEEEechHHHHH--HHHcCCCe
Q 033111 59 ANDQNKVKELMDSIQQIG----LQVPIDVIE----------VDGNYYGFSGCHRYEA--HQRLGLPT 109 (127)
Q Consensus 59 ~~~~~~i~~La~SI~~~G----~l~PIvV~~----------~~g~y~Ii~G~rRl~A--ak~LG~~~ 109 (127)
.++++++++|.+.|++.= .=+|+.+.+ ..|+|-+...+.-|.| ++.+|.+.
T Consensus 97 ~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~~TCNtWta~~L~aaG~~~ 163 (173)
T PF09601_consen 97 RLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLFNTCNTWTARALKAAGLPA 163 (173)
T ss_pred EcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEeecCcHHHHHHHHHHcCCCc
Confidence 579999999999988631 224555422 1378999999999975 46777653
Done!