Query 033111
Match_columns 127
No_of_seqs 196 out of 1200
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:16:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xw3_A Sulfiredoxin; retroredu 99.9 6.4E-24 2.2E-28 148.9 8.8 86 39-126 11-102 (110)
2 1yzs_A Sulfiredoxin; PARB doma 99.9 1.3E-21 4.3E-26 139.2 11.3 88 37-126 20-113 (121)
3 1vz0_A PARB, chromosome partit 99.9 1.2E-22 4.3E-27 157.3 6.4 85 40-124 21-106 (230)
4 1vk1_A Conserved hypothetical 99.7 5.6E-18 1.9E-22 132.2 6.1 83 39-125 15-100 (242)
5 2hwj_A AGR_C_2837P, hypothetic 98.4 1.3E-06 4.4E-11 66.7 8.3 79 39-120 6-94 (205)
6 3sgv_B Undecaprenyl pyrophosph 38.3 30 0.001 26.6 3.7 12 90-101 22-33 (253)
7 3zqp_A Terminase small subunit 32.1 1.4E+02 0.0048 21.4 6.5 51 57-107 84-138 (164)
8 3mn5_S Protein spire, actin, a 28.9 28 0.00096 19.0 1.5 19 64-82 16-34 (38)
9 3qas_B Undecaprenyl pyrophosph 26.4 53 0.0018 25.2 3.3 10 90-99 22-31 (253)
10 1f75_A Undecaprenyl pyrophosph 25.1 63 0.0022 24.6 3.5 11 90-100 25-35 (249)
11 2vg3_A Undecaprenyl pyrophosph 25.0 75 0.0026 24.8 4.0 26 90-115 60-108 (284)
12 2lnd_A De novo designed protei 21.0 64 0.0022 21.1 2.4 26 59-86 34-59 (112)
No 1
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=99.90 E-value=6.4e-24 Score=148.94 Aligned_cols=86 Identities=38% Similarity=0.586 Sum_probs=78.0
Q ss_pred CCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhcCcc-cceEEEEeC----C-eEEEEechHHHHHHHHcCCCeeeE
Q 033111 39 GPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPIDVIEVD----G-NYYGFSGCHRYEAHQRLGLPTIRC 112 (127)
Q Consensus 39 ~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~G~l-~PIvV~~~~----g-~y~Ii~G~rRl~Aak~LG~~~Ip~ 112 (127)
-.++.+||+++|..+.++ .+|++++++|++||+++|+. +||.|++.+ | .|++++|+|||+|++.||+++|||
T Consensus 11 ~~~v~~IPi~~I~~p~~~--~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~li~G~hRl~A~k~Lg~~tIpA 88 (110)
T 1xw3_A 11 IAAVHNVPLSVLIRPLPS--VLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPA 88 (110)
T ss_dssp CEEEEEEEGGGEECCSCC--CCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEEEE
T ss_pred CceEEEeCHHHccCCCCC--ccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEEEEcchHHHHHHHHcCCCcCCE
Confidence 456889999999975543 89999999999999999997 999999852 2 499999999999999999999999
Q ss_pred EEEeCCHHHHhccc
Q 033111 113 KVRRGTKETLRHHL 126 (127)
Q Consensus 113 iV~d~~d~e~r~y~ 126 (127)
+|++.+++++++||
T Consensus 89 ~V~~~~~~~l~~yl 102 (110)
T 1xw3_A 89 KLVQSTLSDLRVYL 102 (110)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEcCCHHHHHHHh
Confidence 99999999999998
No 2
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=99.87 E-value=1.3e-21 Score=139.23 Aligned_cols=88 Identities=39% Similarity=0.602 Sum_probs=79.2
Q ss_pred CCCCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhcCcc-cceEEEEeC----C-eEEEEechHHHHHHHHcCCCee
Q 033111 37 GSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPIDVIEVD----G-NYYGFSGCHRYEAHQRLGLPTI 110 (127)
Q Consensus 37 ~~~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~G~l-~PIvV~~~~----g-~y~Ii~G~rRl~Aak~LG~~~I 110 (127)
..-..+.+||+++|+.+. + +.+|++++++|++||++.|+. +||.|.+.+ | .|.+++|+|||+|++.||+++|
T Consensus 20 ~~~~~i~~IPl~~I~~p~-~-r~~d~~kv~eL~eSI~~~Gl~~~PI~V~~~~g~~gg~~Y~l~~G~hRleA~k~LG~~tI 97 (121)
T 1yzs_A 20 GRIAAVHNVPLSVLIRPL-P-SVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETI 97 (121)
T ss_dssp SCCCCEEEEEGGGEECCC-C-CCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEE
T ss_pred CCcceEEEeeHHHeeCCC-C-CcCCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCceEEEEecchHHHHHHHcCcCcc
Confidence 455678999999999854 4 379999999999999999997 999998752 2 3999999999999999999999
Q ss_pred eEEEEeCCHHHHhccc
Q 033111 111 RCKVRRGTKETLRHHL 126 (127)
Q Consensus 111 p~iV~d~~d~e~r~y~ 126 (127)
||+|++.+++++++||
T Consensus 98 ~A~vv~~t~~~l~~yl 113 (121)
T 1yzs_A 98 PAKLVQSTLSDLRVYL 113 (121)
T ss_dssp EEEEEECCHHHHHHHH
T ss_pred cEEEEcCCHHHHHHHh
Confidence 9999999999999998
No 3
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=99.87 E-value=1.2e-22 Score=157.29 Aligned_cols=85 Identities=29% Similarity=0.380 Sum_probs=77.9
Q ss_pred CcEEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcCCCeeeEEEEeCC
Q 033111 40 PVILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGT 118 (127)
Q Consensus 40 ~~i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~ 118 (127)
..+..||+++|.+ +.|+|+.++++.+++|++||+++|+++||+|++.+|+|+|++|||||+|++.+|+++|||+|.+.+
T Consensus 21 ~~i~~i~i~~I~~~~~npR~~~~~~~~~eLa~SI~~~G~l~PI~V~~~~g~y~Ii~G~rR~~Aa~~lg~~~Ip~iv~~~~ 100 (230)
T 1vz0_A 21 AGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERRYRAALMAGLQEVPAVVKDLT 100 (230)
T ss_dssp --CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEETTEEEEEECHHHHHHHHHHTCSEEEEEECCCC
T ss_pred CceEEEEHHHcccCCCCCCccCCHHHHHHHHHHHHHcCceeCeEEEEeCCEEEEEeCHHHHHHHHHcCCceeeEEEEeCC
Confidence 3689999999999 788887789999999999999999999999999878899999999999999999999999999999
Q ss_pred HHHHhc
Q 033111 119 KETLRH 124 (127)
Q Consensus 119 d~e~r~ 124 (127)
++++..
T Consensus 101 d~ea~~ 106 (230)
T 1vz0_A 101 DREALE 106 (230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 4
>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2
Probab=99.71 E-value=5.6e-18 Score=132.20 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=72.5
Q ss_pred CCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhcCcc-cceEEEEe--CCeEEEEechHHHHHHHHcCCCeeeEEEE
Q 033111 39 GPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPIDVIEV--DGNYYGFSGCHRYEAHQRLGLPTIRCKVR 115 (127)
Q Consensus 39 ~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~G~l-~PIvV~~~--~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~ 115 (127)
...+..|+++.|++.. .++++++++|++||+++|++ +||+|++. .|.|+|+||||||+||+.+|+++|||+++
T Consensus 15 ~~~i~~i~~~~i~p~e----~~~~~~~~~l~~sI~~~G~~~~PIiV~~~~~~~~~~IidGhhR~~AA~~lGl~~iP~iv~ 90 (242)
T 1vk1_A 15 KVEYVFIELDKMXPHE----QLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVIL 90 (242)
T ss_dssp CCCCEEEEGGGEECSB----CCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEE
T ss_pred cceEEEEehhhcCCCc----CCCHHHHHHHHHHHHHhCCccCCEEEEecCCCCcEEEEeCHHHHHHHHHCCCCcceEEEE
Confidence 3457788888888753 36889999999999999998 99999986 35799999999999999999999999999
Q ss_pred eCCHHHHhcc
Q 033111 116 RGTKETLRHH 125 (127)
Q Consensus 116 d~~d~e~r~y 125 (127)
+.+++++.++
T Consensus 91 ~~~d~~~~i~ 100 (242)
T 1vk1_A 91 DYFDEGVKVY 100 (242)
T ss_dssp CTTSTTCEEE
T ss_pred ECCchhheee
Confidence 9998887653
No 5
>2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.61A {Agrobacterium tumefaciens str} SCOP: d.268.1.3
Probab=98.38 E-value=1.3e-06 Score=66.72 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=54.6
Q ss_pred CCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHh------cCcc--cceEEEE-eCCeEEEEechHHHHHHHHcCCCe
Q 033111 39 GPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQ------IGLQ--VPIDVIE-VDGNYYGFSGCHRYEAHQRLGLPT 109 (127)
Q Consensus 39 ~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~------~G~l--~PIvV~~-~~g~y~Ii~G~rRl~Aak~LG~~~ 109 (127)
...+.+++|++|+|... .+.-.+++.=...++. ..++ .||.|.. -+|.++|+|||||.+|+..+|.++
T Consensus 6 ~~~l~~v~I~~L~PTQ~---~VG~~ev~~K~~~~~~~~~~~~~~~l~~~pipVVigp~g~lyl~DgHH~~~Al~~~G~~~ 82 (205)
T 2hwj_A 6 EPRLSRIAIDKLRPTQI---AVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEH 82 (205)
T ss_dssp SCBEEEEEGGGCBCSBS---EECHHHHHHHHHHHHTCC-----CCTTCBEEEEEECSTTCEEECSCHHHHHHHHHTTCCE
T ss_pred CCceeEEEHHHccCcch---hhhHHHHHHHHHHHHhhhHHHHHHHhhcCCceEEECCCCCEEEECChHHHHHHHHcCCCe
Confidence 45688999999998432 2444444444444431 1122 4884444 468999999999999999999999
Q ss_pred eeEEEE-eCCHH
Q 033111 110 IRCKVR-RGTKE 120 (127)
Q Consensus 110 Ip~iV~-d~~d~ 120 (127)
|++.|+ ++++.
T Consensus 83 v~v~Vi~dls~l 94 (205)
T 2hwj_A 83 VLTSEVAKFSHL 94 (205)
T ss_dssp EEEEEEEECTTS
T ss_pred EEEEEeeccCCC
Confidence 999987 55443
No 6
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=38.30 E-value=30 Score=26.64 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=10.4
Q ss_pred EEEEechHHHHH
Q 033111 90 YYGFSGCHRYEA 101 (127)
Q Consensus 90 y~Ii~G~rRl~A 101 (127)
-+|.||++||.-
T Consensus 22 AiIMDGNrRwAk 33 (253)
T 3sgv_B 22 AIIMDGNGRWAK 33 (253)
T ss_dssp EEEECCHHHHHH
T ss_pred EEEecCcHHHHH
Confidence 479999999976
No 7
>3zqp_A Terminase small subunit; DNA-binding protein, DNA packaging; 3.00A {Bacillus phage SF6} PDB: 3zqq_A
Probab=32.10 E-value=1.4e+02 Score=21.37 Aligned_cols=51 Identities=20% Similarity=0.061 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEE----EechHHHHHHHHcCC
Q 033111 57 TRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYG----FSGCHRYEAHQRLGL 107 (127)
Q Consensus 57 rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~I----i~G~rRl~Aak~LG~ 107 (127)
+...+.+++-+...+|...-...-+++...+|.+.+ .+=.-|+.|+.+||.
T Consensus 84 ~~~~t~deVL~~Lt~Iarg~~~e~v~~~~~~G~~~~~~~~~~~~driKAlelLgK 138 (164)
T 3zqp_A 84 KKILQANEVLEHLTRIALGQEKEQVLMGIGKGAETKTHVEVSAKDRIKALELLGK 138 (164)
T ss_dssp -CCCCHHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHcCCCceEEEeecCCCceeeeecCCCHHHHHHHHHHHHH
Confidence 446777777777777765444455555544565433 345779999999884
No 8
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=28.88 E-value=28 Score=19.02 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCcccceE
Q 033111 64 KVKELMDSIQQIGLQVPID 82 (127)
Q Consensus 64 ~i~~La~SI~~~G~l~PIv 82 (127)
--++|.+||+..-.+.+|.
T Consensus 16 preql~esir~g~elkqit 34 (38)
T 3mn5_S 16 PREQLMESIRKGKELKQIT 34 (38)
T ss_pred cHHHHHHHHHccccccccC
Confidence 3579999999877666653
No 9
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=26.39 E-value=53 Score=25.15 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=8.7
Q ss_pred EEEEechHHH
Q 033111 90 YYGFSGCHRY 99 (127)
Q Consensus 90 y~Ii~G~rRl 99 (127)
-+|+||++||
T Consensus 22 AiImDGN~Rw 31 (253)
T 3qas_B 22 AIIMDGNGRW 31 (253)
T ss_dssp EEECCCHHHH
T ss_pred EEEecCCHHH
Confidence 3799999998
No 10
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=25.06 E-value=63 Score=24.60 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=9.1
Q ss_pred EEEEechHHHH
Q 033111 90 YYGFSGCHRYE 100 (127)
Q Consensus 90 y~Ii~G~rRl~ 100 (127)
-+|+||++||.
T Consensus 25 AiImDGN~RwA 35 (249)
T 1f75_A 25 AIIMDGNGRWA 35 (249)
T ss_dssp EEEECCHHHHH
T ss_pred EEEecCCcHHH
Confidence 37999999983
No 11
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=25.02 E-value=75 Score=24.77 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=18.7
Q ss_pred EEEEechHHHH-----------------------HHHHcCCCeeeEEEE
Q 033111 90 YYGFSGCHRYE-----------------------AHQRLGLPTIRCKVR 115 (127)
Q Consensus 90 y~Ii~G~rRl~-----------------------Aak~LG~~~Ip~iV~ 115 (127)
-+|+||++||. .|..+|.+.+-....
T Consensus 60 AIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaF 108 (284)
T 2vg3_A 60 AIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAF 108 (284)
T ss_dssp EEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 37999999994 355677777766654
No 12
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.98 E-value=64 Score=21.09 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHhcCcccceEEEEe
Q 033111 59 ANDQNKVKELMDSIQQIGLQVPIDVIEV 86 (127)
Q Consensus 59 ~~~~~~i~~La~SI~~~G~l~PIvV~~~ 86 (127)
..+..++..+..||+.+| .|++|.-.
T Consensus 34 atssqdirdiiksmkdng--kplvvfvn 59 (112)
T 2lnd_A 34 ATSSQDIRDIIKSMKDNG--KPLVVFVN 59 (112)
T ss_dssp ECSHHHHHHHHHHHTTCC--SCEEEEEC
T ss_pred ccchhhHHHHHHHHHhcC--CeEEEEec
Confidence 467889999999999998 58887653
Done!