BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033112
         (127 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
          Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
          W-Box Dna
          Length = 78

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query: 21 LPEDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDG 75
          L +DGY W+KYGQK +K     RSY+KC    C  +K  E   +DP  V   Y+G
Sbjct: 16 LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 70


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof
          Atwrky1, An Sa-Induced And Partially Npr1-Dependent
          Transcription Factor
          Length = 76

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 24 DGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDG 75
          DGY W+KYGQK +K     RSY++C    C  KK  E  + D   +   Y+G
Sbjct: 16 DGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEG 67


>pdb|1IGQ|A Chain A, C-Terminal Domain Of Transcriptional Repressor Protein
          Korb
 pdb|1IGQ|B Chain B, C-Terminal Domain Of Transcriptional Repressor Protein
          Korb
 pdb|1IGQ|C Chain C, C-Terminal Domain Of Transcriptional Repressor Protein
          Korb
 pdb|1IGQ|D Chain D, C-Terminal Domain Of Transcriptional Repressor Protein
          Korb
 pdb|1IGU|A Chain A, C-Terminal Domain Of The Transcriptional Repressor
          Protein Korb
 pdb|1IGU|B Chain B, C-Terminal Domain Of The Transcriptional Repressor
          Protein Korb
          Length = 62

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 7/36 (19%)

Query: 11 EMDRRVHRLVL----PEDGYEWKKY---GQKFIKNI 39
          E D R  RL+L    P +GY W KY   GQ+F  N+
Sbjct: 16 EHDERPARLILNRRPPAEGYAWLKYEDDGQEFEANL 51


>pdb|1OP4|A Chain A, Solution Structure Of Neural Cadherin Prodomain
          Length = 159

 Score = 25.4 bits (54), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/58 (18%), Positives = 29/58 (50%)

Query: 19 LVLPEDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDGV 76
          + L + G+    Y     K++ + +     + S+C  K++ ++ +S+P + ++  DG 
Sbjct: 29 IALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGT 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,086,672
Number of Sequences: 62578
Number of extensions: 89515
Number of successful extensions: 132
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 4
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)