Query 033112
Match_columns 127
No_of_seqs 125 out of 620
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 8.6E-39 3E-43 218.1 5.4 73 11-83 3-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 2.5E-38 8.6E-43 216.7 6.3 74 10-83 5-78 (78)
3 2rpr_A Flywch-type zinc finger 77.8 1.5 5.3E-05 28.6 2.7 51 19-82 21-74 (87)
4 1cz6_A Protein (androctonin); 45.9 6.1 0.00021 21.0 0.6 8 44-51 16-23 (26)
5 1igq_A Transcriptional repress 39.9 6.5 0.00022 25.3 0.1 24 5-32 18-41 (62)
6 1xiw_B T-cell surface glycopro 30.1 14 0.00047 23.9 0.5 27 23-49 17-53 (79)
7 1odh_A MGCM1; transcription fa 22.0 69 0.0024 24.2 3.1 16 69-84 144-159 (174)
8 1xiw_A T-cell surface glycopro 20.0 35 0.0012 23.7 1.0 28 23-50 33-79 (105)
9 2lv4_A Putative outer membrane 16.9 1.9E+02 0.0066 21.1 4.4 21 53-78 101-123 (146)
10 1ter_A Tertiapin; toxin; NMR { 15.2 25 0.00084 18.6 -0.5 11 26-36 13-23 (26)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=8.6e-39 Score=218.08 Aligned_cols=73 Identities=32% Similarity=0.585 Sum_probs=69.0
Q ss_pred hhhhhccccCCCCCCccccccccccccCCCcccccceeccCCcccccceeeecCCCCeEEEEEecCCCCCCCC
Q 033112 11 EMDRRVHRLVLPEDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDGVHSHTHHG 83 (127)
Q Consensus 11 ~~~~~~~~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~~p~ 83 (127)
+++++.+.+++++|||.|||||||.|||++|||+||||++.+|+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus 3 ~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 3 IVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred EEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 4566678889999999999999999999999999999999999999999999999999999999999999986
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=2.5e-38 Score=216.71 Aligned_cols=74 Identities=35% Similarity=0.672 Sum_probs=68.0
Q ss_pred hhhhhhccccCCCCCCccccccccccccCCCcccccceeccCCcccccceeeecCCCCeEEEEEecCCCCCCCC
Q 033112 10 QEMDRRVHRLVLPEDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDGVHSHTHHG 83 (127)
Q Consensus 10 ~~~~~~~~~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~~p~ 83 (127)
..++.+.+.+++++|||.|||||||.|||++|||+|||||+++|+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus 5 ~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 5 SSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ---CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred eEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999884
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=77.82 E-value=1.5 Score=28.62 Aligned_cols=51 Identities=16% Similarity=0.357 Sum_probs=32.0
Q ss_pred cCCCCCCccccccccccccCCCcccccceeccC---CcccccceeeecCCCCeEEEEEecCCCCCCC
Q 033112 19 LVLPEDGYEWKKYGQKFIKNIRKFRSYFKCQES---SCMAKKRAEWCTSDPTNVRIVYDGVHSHTHH 82 (127)
Q Consensus 19 ~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~---~C~akK~Vqr~~~d~~~~~vtY~G~H~h~~p 82 (127)
..+.-|||.-.+--+ ...+.|.+|+.. +|.|+=.... + . +.-.+.|||++.
T Consensus 21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~-~---~~~~~~HnH~p~ 74 (87)
T 2rpr_A 21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H-R---IMVMRSHCHQPD 74 (87)
T ss_dssp EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T-E---EEECSCCSSCCC
T ss_pred cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C-C---EECCCCcCCCCc
Confidence 345678887775321 123689999973 5999754432 2 1 335789999754
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=45.92 E-value=6.1 Score=20.97 Aligned_cols=8 Identities=38% Similarity=1.182 Sum_probs=6.6
Q ss_pred ccceeccC
Q 033112 44 SYFKCQES 51 (127)
Q Consensus 44 sYyrCt~~ 51 (127)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999974
No 5
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=39.89 E-value=6.5 Score=25.26 Aligned_cols=24 Identities=38% Similarity=0.707 Sum_probs=17.4
Q ss_pred cccchhhhhhhccccCCCCCCccccccc
Q 033112 5 DGEDAQEMDRRVHRLVLPEDGYEWKKYG 32 (127)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~DGy~WRKYG 32 (127)
|+|.++.|.++ .++.+|+-|-||.
T Consensus 18 dgR~arlllnr----Rps~~G~~wiKyE 41 (62)
T 1igq_A 18 DERPARLILNR----RPPAEGYAWLKYE 41 (62)
T ss_dssp TTEEEEECTTB----CCSSTTEEEEEET
T ss_pred CChhhhhhhcc----CCCcCceEEEEEe
Confidence 56666666642 2668999999995
No 6
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=30.08 E-value=14 Score=23.94 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=19.2
Q ss_pred CCCcccccccccc--------cc--CCCcccccceec
Q 033112 23 EDGYEWKKYGQKF--------IK--NIRKFRSYFKCQ 49 (127)
Q Consensus 23 ~DGy~WRKYGQK~--------ik--g~~~pRsYyrCt 49 (127)
.+++.|.|-|... +. ...-||++|.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5679999988642 22 444589999993
No 7
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=22.03 E-value=69 Score=24.20 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=11.8
Q ss_pred EEEEEecCCCCCCCCC
Q 033112 69 VRIVYDGVHSHTHHGS 84 (127)
Q Consensus 69 ~~vtY~G~H~h~~p~~ 84 (127)
+...-+|.|+|+.|.+
T Consensus 144 ifFqaKG~HDHpRPe~ 159 (174)
T 1odh_A 144 IFFQSKGEHDHPRPET 159 (174)
T ss_dssp EEEEEECCCCSCCCCC
T ss_pred EEEecccccCCCCCCC
Confidence 3344469999999975
No 8
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=20.01 E-value=35 Score=23.74 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=19.9
Q ss_pred CCCcccccccccc----------------ccCCCc---ccccceecc
Q 033112 23 EDGYEWKKYGQKF----------------IKNIRK---FRSYFKCQE 50 (127)
Q Consensus 23 ~DGy~WRKYGQK~----------------ikg~~~---pRsYyrCt~ 50 (127)
.+...|.|-|+.. +.++.. ||.+|.|..
T Consensus 33 ~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~ 79 (105)
T 1xiw_A 33 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79 (105)
T ss_dssp TSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred CCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEcc
Confidence 3559999988653 445533 899999963
No 9
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=16.86 E-value=1.9e+02 Score=21.05 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=15.4
Q ss_pred cccccceeeecCCCC--eEEEEEecCCC
Q 033112 53 CMAKKRAEWCTSDPT--NVRIVYDGVHS 78 (127)
Q Consensus 53 C~akK~Vqr~~~d~~--~~~vtY~G~H~ 78 (127)
|++||-. .|. +-.|||.|-|+
T Consensus 101 g~~Kkg~-----~PGeY~q~iTY~G~s~ 123 (146)
T 2lv4_A 101 GPLKKEN-----VPGKYTQVITYRGHSN 123 (146)
T ss_dssp CCCEECS-----SSSEEEEEEEEETTCC
T ss_pred cceecCC-----CCcceEEEEEEcCCCC
Confidence 8888843 344 56799999886
No 10
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=15.24 E-value=25 Score=18.57 Aligned_cols=11 Identities=45% Similarity=0.827 Sum_probs=7.7
Q ss_pred ccccccccccc
Q 033112 26 YEWKKYGQKFI 36 (127)
Q Consensus 26 y~WRKYGQK~i 36 (127)
..|+|.|.|..
T Consensus 13 mcwkkcgkk~~ 23 (26)
T 1ter_A 13 MCWKKCGKKXX 23 (26)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHhCcccc
Confidence 57999998864
Done!