BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033113
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core
pdb|2JKR|I Chain I, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|S Chain S, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|I Chain I, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|S Chain S, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2XA7|S Chain S, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 142
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFIS 117
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+K V D +F++
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 118 SSV 120
+
Sbjct: 121 GEI 123
>pdb|1W63|Q Chain Q, Ap1 Clathrin Adaptor Core
pdb|1W63|S Chain S, Ap1 Clathrin Adaptor Core
pdb|1W63|T Chain T, Ap1 Clathrin Adaptor Core
pdb|1W63|U Chain U, Ap1 Clathrin Adaptor Core
pdb|1W63|W Chain W, Ap1 Clathrin Adaptor Core
pdb|1W63|X Chain X, Ap1 Clathrin Adaptor Core
Length = 158
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 79/110 (71%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
M+RF+LL +RQGK RL K+Y+ D E+ K+ E+ ++V+ R PK +F+E+R KV+Y+
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
RYA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKA 110
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 6 LLQNRQ--GKTRLAKYYVPLEDSEK-HKVEYEVHRLVVN--RDPKFTNFVEFRTHKVI 58
++QN+ RLA +Y+ L+D EK H + YE H +V+ R + +TH+++
Sbjct: 24 IVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEIL 81
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 6 LLQNRQ--GKTRLAKYYVPLEDSEK-HKVEYEVHRLVVN--RDPKFTNFVEFRTHKVI 58
++QN+ RLA +Y+ L+D EK H + YE H +V+ R + +TH+++
Sbjct: 19 IVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKIFVVAIINSQTHEIL 76
>pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
pdb|2H5G|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
Length = 463
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 35 VHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLF 87
V ++ ++ PKF +++ F +V R LC+++ DN ++ IH +
Sbjct: 307 VEQVKIHAGPKFASYLTFSPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKY 359
>pdb|2Y35|A Chain A, Crystal Structure Of Xrn1-Substrate Complex
Length = 1140
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 56 KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEI-----LDHFFSNVCELDLVFNFHKV 110
++YR Y G++ +L +I +N L + +F+ LDHF + +L + N +
Sbjct: 304 PLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDHFKEHADDLKYMNNKSEA 363
Query: 111 CD 112
D
Sbjct: 364 FD 365
>pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate
pdb|1AY4|B Chain B, Aromatic Amino Acid Aminotransferase Without Substrate
pdb|1AY5|A Chain A, Aromatic Amino Acid Aminotransferase Complex With Maleate
pdb|1AY5|B Chain B, Aromatic Amino Acid Aminotransferase Complex With Maleate
pdb|1AY8|A Chain A, Aromatic Amino Acid Aminotransferase Complex With
3-Phenylpropionate
pdb|1AY8|B Chain B, Aromatic Amino Acid Aminotransferase Complex With
3-Phenylpropionate
pdb|2AY1|A Chain A, Aromatic Amino Acid Aminotransferase With
4-aminohydrocinnamic Acid
pdb|2AY1|B Chain B, Aromatic Amino Acid Aminotransferase With
4-aminohydrocinnamic Acid
pdb|2AY2|A Chain A, Aromatic Amino Acid Aminotransferase With Cyclohexane
Propionic Acid
pdb|2AY2|B Chain B, Aromatic Amino Acid Aminotransferase With Cyclohexane
Propionic Acid
pdb|2AY3|A Chain A, Aromatic Amino Acid Aminotransferase With
3-(3,4-Dimethoxyphenyl) Propionic Acid
pdb|2AY3|B Chain B, Aromatic Amino Acid Aminotransferase With
3-(3,4-Dimethoxyphenyl) Propionic Acid
pdb|2AY4|A Chain A, Aromatic Amino Acid Aminotransferase With
3-(P-Tolyl)propionic Acid
pdb|2AY4|B Chain B, Aromatic Amino Acid Aminotransferase With
3-(P-Tolyl)propionic Acid
pdb|2AY5|A Chain A, Aromatic Amino Acid Aminotransferase With
3-indolepropionic Acid
pdb|2AY5|B Chain B, Aromatic Amino Acid Aminotransferase With
3-indolepropionic Acid
pdb|2AY6|A Chain A, Aromatic Amino Acid Aminotransferase With 3-Indolebutyric
Acid
pdb|2AY6|B Chain B, Aromatic Amino Acid Aminotransferase With 3-Indolebutyric
Acid
pdb|2AY7|A Chain A, Aromatic Amino Acid Aminotransferase With 4-Phenylbutyric
Acid
pdb|2AY7|B Chain B, Aromatic Amino Acid Aminotransferase With 4-Phenylbutyric
Acid
pdb|2AY8|A Chain A, Aromatic Amino Acid Aminotransferase With
4-(2-Thienyl)butyric Acid
pdb|2AY8|B Chain B, Aromatic Amino Acid Aminotransferase With
4-(2-Thienyl)butyric Acid
pdb|2AY9|A Chain A, Aromatic Amino Acid Aminotransferase With 5-Phenylvaleric
Acid
pdb|2AY9|B Chain B, Aromatic Amino Acid Aminotransferase With 5-Phenylvaleric
Acid
Length = 394
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 37 RLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELA 79
RL+ +R P+ + IYR G +LC D ELA
Sbjct: 226 RLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELA 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.333 0.146 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,589,587
Number of Sequences: 62578
Number of extensions: 137926
Number of successful extensions: 507
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 9
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 45 (21.9 bits)