BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033113
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O50016|AP2S1_MAIZE AP-2 complex subunit sigma OS=Zea mays GN=AP-17 PE=2 SV=1
Length = 132
Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/110 (99%), Positives = 110/110 (100%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
RYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV
Sbjct: 61 RYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
>sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2
SV=1
Length = 142
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 106/110 (96%), Positives = 108/110 (98%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYR
Sbjct: 1 MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
RYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKV
Sbjct: 61 RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKV 110
>sp|Q54H39|AP2S_DICDI AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1
PE=3 SV=2
Length = 142
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 102/123 (82%), Gaps = 3/123 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI FIL+QNRQGKTRL+K+Y P ED EK K+ +E+H++V +R+ KFTNFVEFRTH+++YR
Sbjct: 1 MIHFILIQNRQGKTRLSKWYTPYEDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV---CDRIFIS 117
RYAGLFFS+CVD TDNEL LE IHLFVE+LD +F NVCELDLVFNF+KV D +F++
Sbjct: 61 RYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLA 120
Query: 118 SSV 120
+
Sbjct: 121 GEL 123
>sp|Q7SAQ1|AP2S_NEUCR AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=aps-2 PE=3 SV=1
Length = 143
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/124 (66%), Positives = 98/124 (79%), Gaps = 4/124 (3%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 59
M+ FIL+QNRQGKTRLAK+YVP D EK K++ E+HRLV RD K+ +NFVEFR HKV+Y
Sbjct: 1 MLSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVY 60
Query: 60 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV---CDRIFI 116
RRYAGLFF CVD DNELAYLE IH FVE+LD FF NVCELDLVFNF+KV D +F+
Sbjct: 61 RRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFL 120
Query: 117 SSSV 120
+ +
Sbjct: 121 AGEI 124
>sp|Q4ICG5|AP2S_GIBZE AP-2 complex subunit sigma OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=APS2 PE=3 SV=1
Length = 143
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/124 (63%), Positives = 97/124 (78%), Gaps = 4/124 (3%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 59
M+ FIL+QNRQGKTRLAK+Y P D +K K++ EVHRLV RD K+ +NFVEFR +K++Y
Sbjct: 1 MLSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVY 60
Query: 60 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV---CDRIFI 116
RRYAGLFF CVD DNELA+LE IH FVE+LD FF NVCELDLVFNF+KV D +F+
Sbjct: 61 RRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFL 120
Query: 117 SSSV 120
+ +
Sbjct: 121 AGEI 124
>sp|Q4WS49|AP2S_ASPFU AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=aps2 PE=3
SV=1
Length = 145
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 99/125 (79%), Gaps = 5/125 (4%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVI 58
++ FIL+QNRQGKTRLAK+Y P D EK K++ EVHRLV RD K+ +NFVEF R+ K++
Sbjct: 2 VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIV 61
Query: 59 YRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV---CDRIF 115
YRRYAGLFF +CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KV D +F
Sbjct: 62 YRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVF 121
Query: 116 ISSSV 120
++ +
Sbjct: 122 LAGEI 126
>sp|Q5BFF8|AP2S_EMENI AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aps2 PE=3
SV=1
Length = 145
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 98/125 (78%), Gaps = 5/125 (4%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVI 58
++ FIL+QNRQGKTRLAK+Y P D EK K++ EVHRLV RD K+ +NFVEF R+ K++
Sbjct: 2 VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIV 61
Query: 59 YRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV---CDRIF 115
YRRYAGLFF CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KV D +F
Sbjct: 62 YRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVF 121
Query: 116 ISSSV 120
++ +
Sbjct: 122 LAGEI 126
>sp|P62744|AP2S1_RAT AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1
Length = 142
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFIS 117
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+K V D +F++
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 118 SSV 120
+
Sbjct: 121 GEI 123
>sp|Q5R940|AP2S1_PONAB AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1
Length = 142
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFIS 117
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+K V D +F++
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 118 SSV 120
+
Sbjct: 121 GEI 123
>sp|P62743|AP2S1_MOUSE AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1
Length = 142
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFIS 117
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+K V D +F++
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 118 SSV 120
+
Sbjct: 121 GEI 123
>sp|P53680|AP2S1_HUMAN AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2
Length = 142
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFIS 117
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+K V D +F++
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 118 SSV 120
+
Sbjct: 121 GEI 123
>sp|Q17QC5|AP2S1_BOVIN AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 PE=2 SV=1
Length = 142
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MIRFIL+QNR GKTRLAK+Y+ +D EK K+ EVH +V RD K TNFVEFR K+IYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFIS 117
RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+K V D +F++
Sbjct: 61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 118 SSV 120
+
Sbjct: 121 GEI 123
>sp|Q9Y7L6|AP2S_SCHPO AP-2 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps2 PE=3 SV=1
Length = 143
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 93/127 (73%), Gaps = 4/127 (3%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 59
MI+FIL+QNR GK RL+KYYVP +D EK +++ +H+L+ R+ KF NF+E+ K++Y
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 60 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVC---DRIFI 116
RRYAGL+F CVD TDN+LA LE IH FVEILD FF NVCELDL+FNF+KV D I +
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIIL 120
Query: 117 SSSVTVS 123
+ S
Sbjct: 121 GGEIGES 127
>sp|O23685|AP1S2_ARATH AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2
PE=2 SV=1
Length = 162
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 88/126 (69%), Gaps = 3/126 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI F+LL +RQGK RL K+Y P E+ KV E+ +++NR PK NFVE+R +KV+Y+
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFIS 117
RYA L+F +C+D DNEL LE IH +VEILD +F +VCELDL+FNFHK + D + I+
Sbjct: 61 RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 118 SSVTVS 123
+ S
Sbjct: 121 GELQES 126
>sp|Q8LEZ8|AP1S1_ARATH AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1
PE=2 SV=1
Length = 161
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 88/126 (69%), Gaps = 3/126 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI F+LL +RQGK RL K+Y P E+ KV E+ +++NR PK NF+E+R +KV+Y+
Sbjct: 1 MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFIS 117
RYA L+F +C+D DNEL LE IH +VEILD +F +VCELDL+FNFHK + D + I+
Sbjct: 61 RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 118 SSVTVS 123
+ S
Sbjct: 121 GELQES 126
>sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2
PE=3 SV=1
Length = 154
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 85/120 (70%), Gaps = 3/120 (2%)
Query: 4 FILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYA 63
F+LL +RQGKTRL K+Y P + EK + E+ +V+NR PK NF+E++ +K+I++RYA
Sbjct: 5 FLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRYA 64
Query: 64 GLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFISSSV 120
L+F +C D DNEL LE IH FVEILD +F NVCELDL+FNFHK + D + ++ +
Sbjct: 65 SLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGEL 124
>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vas2 PE=1 SV=1
Length = 162
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 75/109 (68%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
I+F LL +RQGK RLAK++ L E+ K+ +V LV+ R PK NFVE++ K++YRR
Sbjct: 3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRR 62
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
YA LFF ++ DNEL LE IH FVE LD +F NVCELDL+FNF K
Sbjct: 63 YASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKA 111
>sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1
Length = 157
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 83/122 (68%), Gaps = 3/122 (2%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
++F+LL +RQGK RL K+YVPL D EK K+ E+ + V+ R PK +F+E+R K++Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFISS 118
YA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K + D +
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 119 SV 120
V
Sbjct: 121 EV 122
>sp|Q9DB50|AP1S2_MOUSE AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1
Length = 160
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 83/122 (68%), Gaps = 3/122 (2%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
++F+LL +RQGK RL K+YVPL D EK K+ E+ + V+ R PK +F+E+R K++Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFISS 118
YA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K + D +
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 119 SV 120
V
Sbjct: 121 EV 122
>sp|Q3ZBS3|AP1S2_BOVIN AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1
Length = 160
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 83/122 (68%), Gaps = 3/122 (2%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
++F+LL +RQGK RL K+YVPL D EK K+ E+ + V+ R PK +F+E+R K++Y+R
Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFISS 118
YA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K + D +
Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120
Query: 119 SV 120
V
Sbjct: 121 EV 122
>sp|P61967|AP1S1_MOUSE AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1
Length = 158
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 79/110 (71%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
M+RF+LL +RQGK RL K+Y+ D E+ K+ E+ ++V+ R PK +F+E+R KV+Y+
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
RYA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKA 110
>sp|P61966|AP1S1_HUMAN AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1
Length = 158
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 79/110 (71%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
M+RF+LL +RQGK RL K+Y+ D E+ K+ E+ ++V+ R PK +F+E+R KV+Y+
Sbjct: 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
RYA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K
Sbjct: 61 RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKA 110
>sp|Q1JQ98|AP1S1_BOVIN AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1
Length = 157
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 78/109 (71%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
+RF+LL +RQGK RL K+Y+ D E+ K+ E+ ++V+ R PK +F+E+R KV+Y+R
Sbjct: 1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 60
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
YA L+F ++ DNEL LE IH +VE+LD +F +VCELD++FNF K
Sbjct: 61 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKA 109
>sp|Q96PC3|AP1S3_HUMAN AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1
Length = 154
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 84/123 (68%), Gaps = 3/123 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI FILL +RQGK RL K+Y+ L D E+ K+ E+ +++++R + ++FV+++ K++Y+
Sbjct: 1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFIS 117
RYA L+F ++ DNEL LE +H +VE+LD +F NVCELD++FNF K + D I
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 118 SSV 120
+
Sbjct: 121 GEI 123
>sp|P35181|AP1S1_YEAST AP-1 complex subunit sigma-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APS1 PE=1 SV=1
Length = 156
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 76/113 (67%), Gaps = 3/113 (2%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
++++LL +RQGK RL K+Y + EK K+ ++ ++ R PK N +E+ HKV+Y+R
Sbjct: 4 LKYLLLVSRQGKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYNDHKVVYKR 63
Query: 62 YAGLFF--SLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVCD 112
YA L+F + D+ DNEL LE IH FVE +D +F NVCELD++FNF KV D
Sbjct: 64 YASLYFIVGMTPDV-DNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYD 115
>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790
PE=2 SV=1
Length = 143
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 83/125 (66%), Gaps = 3/125 (2%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
IRFIL+ N+QG+TRLA+YY L E+ +E E+ R + R+ + +FVE R +K++YRR
Sbjct: 3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVCDRIFISSSVT 121
YA LFF + VD +NELA LE IHL VE +D F NVCELD++F+ K F+ +
Sbjct: 63 YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAH---FMLEEMV 119
Query: 122 VSFCI 126
++ CI
Sbjct: 120 MNGCI 124
>sp|Q7TN05|AP1S3_MOUSE AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1
Length = 154
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 82/123 (66%), Gaps = 3/123 (2%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI FILL +RQGK RL K+Y L D E+ K+ ++ + V++R + ++F++++ K++Y+
Sbjct: 1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYK 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHK---VCDRIFIS 117
RYA L+F ++ DNEL LE +H +VE+LD +F NVCELD++FNF K + D I
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIG 120
Query: 118 SSV 120
+
Sbjct: 121 GEI 123
>sp|Q54WW3|AP1S1_DICDI AP-1 complex subunit sigma-1 OS=Dictyostelium discoideum GN=ap1s1
PE=3 SV=1
Length = 156
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 72/110 (65%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI F+L NRQ K RL+K+Y +EK++ EV V++R PKF NFV++R ++Y+
Sbjct: 1 MIHFLLCFNRQSKVRLSKFYSTYTPTEKNRATREVMNQVLSRSPKFCNFVQWREFTIVYQ 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
R+A LFF + D TDNEL LE I FV +LD F N+CELDL++ F +
Sbjct: 61 RFASLFFVMVTDSTDNELVTLESIQRFVVVLDIVFGNICELDLIYEFQRA 110
>sp|Q00381|AP2S_YEAST AP-2 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS2 PE=1 SV=1
Length = 147
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 87/127 (68%), Gaps = 7/127 (5%)
Query: 2 IRFILLQNRQGKTRLAKYY-VPLEDSEKHK-VEYEVHRLVVNRDPKF-TNFVEFR-THKV 57
++FIL N+QG RL +++ V D ++ + +++RL+ +RD K +NFVEF + K+
Sbjct: 3 VQFILCFNKQGVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVEFSDSTKL 62
Query: 58 IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV---CDRI 114
IYRRYAGL+F + VD+ D+E YL IHLFVE+LD FF NVCELD+VFNF+KV D +
Sbjct: 63 IYRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIMDEM 122
Query: 115 FISSSVT 121
FI +
Sbjct: 123 FIGGEIQ 129
>sp|Q9WVL1|AP4S1_MOUSE AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1
Length = 144
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 79/110 (71%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI+F L+ N+QG+TRL+KYY ++ +++ +E EV + ++R + +F+E++ K+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+YA LF + V+ T+NE+A E IH FVE+LD +FS V ELD++FN KV
Sbjct: 61 QYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKV 110
>sp|Q3ZBB6|AP4S1_BOVIN AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1
Length = 144
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 79/110 (71%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI+F L+ N+QG+TRL+KYY +E +++ +E EV + ++R + +F+E++ K+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+YA LF + V+ T+NE+A E IH FVE+LD +FS V ELD++FN KV
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKV 110
>sp|Q9Y587|AP4S1_HUMAN AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1
Length = 144
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 79/110 (71%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
MI+F L+ N+QG+TRL+KYY ++ +++ +E EV + ++R + +F+E++ K+IYR
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYR 60
Query: 61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+YA LF + V+ T+NE+A E IH FVE+LD +FS V ELD++FN KV
Sbjct: 61 QYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKV 110
>sp|Q9DCR2|AP3S1_MOUSE AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap3s1 PE=1 SV=2
Length = 193
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF------RT 54
MI+ IL+ N GK RL+K+Y P + + ++ E LV RD NF+E
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKV 116
>sp|Q92572|AP3S1_HUMAN AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP3S1 PE=1 SV=1
Length = 193
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF------RT 54
MI+ IL+ N GK RL+K+Y P + + ++ E LV RD NF+E
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKV 116
>sp|Q2YDH6|AP3S1_BOVIN AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S1 PE=2 SV=1
Length = 193
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF------RT 54
MI+ IL+ N GK RL+K+Y P + + ++ E LV RD NF+E
Sbjct: 1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV
Sbjct: 61 NKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKV 116
>sp|Q09905|AP3S_SCHPO AP-3 complex subunit sigma OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=aps3 PE=3 SV=1
Length = 165
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFR----THK 56
MI + + N +GK RL K+Y P+++S + K+ +++ V R P NF+E ++
Sbjct: 1 MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNR 60
Query: 57 VIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+IYR+YA L+F VD ++EL L+ I +FVE LD F+NVCELDLVF F ++
Sbjct: 61 IIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEI 114
>sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860
PE=2 SV=1
Length = 166
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT-----H 55
MI+ +++ N QGK RLAK+Y L ++ ++ V ++ +R +NF+E +
Sbjct: 1 MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60
Query: 56 KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNF---HKVCD 112
+++Y+ YA L+F L D ++NELA L+ I + VE LD FSNVCELD+VFN+ H V D
Sbjct: 61 RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120
Query: 113 RIFISSSV 120
I V
Sbjct: 121 EIVFGGQV 128
>sp|Q54NZ4|AP4S_DICDI AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1
PE=3 SV=1
Length = 139
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 72/109 (66%), Gaps = 4/109 (3%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
I++ LL N +GKTRL++YY + E+ +E E+ R ++R +FVE++ +KVIYR+
Sbjct: 3 IKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIYRK 62
Query: 62 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
YA LFF + VD T+NELA LE IH +VEILD F NV ++FN K
Sbjct: 63 YATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKA 107
>sp|Q5RDP9|AP3S2_PONAB AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1
Length = 193
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 54
MI+ IL+ N GK RL ++Y + + ++ E LV+ RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKV 116
>sp|Q8BSZ2|AP3S2_MOUSE AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1
Length = 193
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 54
MI+ IL+ N GK RL ++Y + + ++ E LV+ RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKV 116
>sp|P59780|AP3S2_HUMAN AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1
Length = 193
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 54
MI+ IL+ N GK RL ++Y + + ++ E LV+ RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKV 116
>sp|Q1JQA3|AP3S2_BOVIN AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1
Length = 193
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT------ 54
MI+ IL+ N GK RL ++Y + + ++ E LV+ RD NF+E +
Sbjct: 1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSD 60
Query: 55 HKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
+K+IYR YA L+F CVD +++EL L+ I +FVE LD F NVCELDL+F+ KV
Sbjct: 61 YKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKV 116
>sp|Q553S2|AP3S_DICDI AP-3 complex subunit sigma OS=Dictyostelium discoideum GN=ap3s1
PE=3 SV=1
Length = 171
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTH----- 55
MI+ IL+ N GK RL K+Y + ++ ++ E+ LV R + NF+E +
Sbjct: 1 MIKSILIINNHGKPRLIKFYEHYSEEKQQQIIRELFLLVSKRTERSCNFLEIGNNSNIFD 60
Query: 56 ---KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
K+IYR YA LFF CVD +++EL+ ++ I FVE LD F NVCELDL+F+ KV
Sbjct: 61 KDTKIIYRHYATLFFIFCVDSSESELSIIDLIQTFVESLDKCFENVCELDLIFHIDKV 118
>sp|Q75F71|AP3S_ASHGO AP-3 complex subunit sigma OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APS3 PE=3 SV=1
Length = 185
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 14/124 (11%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRD-----------PKFTNF 49
MI +L+ N++ + RL KYY P++ ++ + +V+ L+ R+ P +
Sbjct: 1 MIHAVLIFNKKCQPRLVKYYTPVDLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSS 60
Query: 50 VEFRTH---KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFN 106
+ ++IY+ YA L+F+ VD ++ELA L+ I FVE LD F+ V ELDL+FN
Sbjct: 61 GSETINEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFN 120
Query: 107 FHKV 110
+ +
Sbjct: 121 WQTL 124
>sp|P47064|AP3S_YEAST AP-3 complex subunit sigma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APS3 PE=1 SV=1
Length = 194
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 18/128 (14%)
Query: 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTH---- 55
MI +L+ N++ + RL K+Y P++ ++ + +V+ L+ R+ F ++F+
Sbjct: 1 MIHAVLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLS 60
Query: 56 -------------KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELD 102
++IY+ YA L+F+ VD ++ELA L+ I FVE LD F+ V ELD
Sbjct: 61 NENNNDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELD 120
Query: 103 LVFNFHKV 110
L+FN+ +
Sbjct: 121 LIFNWQTL 128
>sp|Q54HD4|COPZA_DICDI Probable coatomer subunit zeta-A OS=Dictyostelium discoideum
GN=copZa PE=3 SV=1
Length = 175
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 4 FILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVE----FRTHKVIY 59
F +L + +G+ +AKYY D+ + + +E + V ++ K NF + V+Y
Sbjct: 11 FFILDSSKGERVIAKYYNNDFDTLQKQKAFE--KKVFDKTSK-VNFGGEITLLDNYLVVY 67
Query: 60 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSN 97
+ ++ + + D NE+A L ++ F++ L + F N
Sbjct: 68 KSFSNIIIYMVGDQNQNEIALLYVLNSFIDTLQNLFEN 105
>sp|Q1HDZ5|EIF3B_BOMMO Eukaryotic translation initiation factor 3 subunit B OS=Bombyx mori
GN=eIF3-S9 PE=2 SV=1
Length = 695
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 8 QNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKV 57
Q ++ K L KYY E ++ + LV R + F E+R K+
Sbjct: 600 QQKEIKKNLKKYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKI 649
>sp|P53600|COPZ_YEAST Coatomer subunit zeta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RET3 PE=1 SV=1
Length = 189
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 33/121 (27%)
Query: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVE---------- 51
++ +L+ ++QG+ AKYY P S+ E H+L+ N K F +
Sbjct: 9 VQAVLILDQQGERIYAKYYQPPHRSD------EGHQLLFNSVKKQKEFEKQLYRKTHKQD 62
Query: 52 -----FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNV-CELDLVF 105
F H V+Y+ Y + L + +NE+ +L FS + LDL+
Sbjct: 63 SEILIFEDHLVLYKEYIDITIYLVASLEENEI-----------VLQQGFSAIRGALDLIL 111
Query: 106 N 106
N
Sbjct: 112 N 112
>sp|Q7MK21|LIFO_VIBVY Lipase chaperone OS=Vibrio vulnificus (strain YJ016) GN=lifO PE=3
SV=1
Length = 280
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 57 VIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFN 106
+Y RY L ++IT +++ LE +H + L + + ++DL+F
Sbjct: 88 ALYLRYKQALADLDIEITGSDITSLETLHQAILDLQREYFSAQQIDLIFG 137
>sp|O26027|MURE_HELPY UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=murE PE=3 SV=1
Length = 447
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 16/84 (19%)
Query: 16 LAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCV--DI 73
L + Y LE++ + K EY + +E +H ++ +R AGL F+L + +I
Sbjct: 121 LLELYSDLEEAVRLKCEYFI--------------MEVSSHAIVQKRIAGLDFALKILTNI 166
Query: 74 TDNELAYLECIHLFVEILDHFFSN 97
T + L + + I + + + FF +
Sbjct: 167 TSDHLDFHQSIENYRDAKNSFFKD 190
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.146 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,568,713
Number of Sequences: 539616
Number of extensions: 1768713
Number of successful extensions: 6968
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6895
Number of HSP's gapped (non-prelim): 65
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)