Query 033113
Match_columns 127
No_of_seqs 120 out of 571
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tjz_C Coatomer subunit zeta-1 100.0 1.7E-44 5.9E-49 266.5 15.7 122 1-125 12-139 (153)
2 1w63_Q Adapter-related protein 100.0 3.5E-43 1.2E-47 259.8 15.7 125 1-125 1-128 (158)
3 2vgl_S AP-2 complex subunit si 100.0 1E-42 3.4E-47 252.6 16.3 124 1-124 1-127 (142)
4 2vgl_M AP-2 complex subunit MU 100.0 9E-33 3.1E-37 230.3 15.1 122 1-125 1-126 (435)
5 1w63_M Adaptor-related protein 100.0 1.6E-32 5.5E-37 228.1 9.7 122 1-125 2-128 (423)
6 2nut_C Vesicle-trafficking pro 95.9 0.21 7.1E-06 36.8 12.1 95 1-96 2-101 (196)
7 2j3t_C Trafficking protein par 92.7 1.8 6.2E-05 30.5 10.4 78 1-78 2-93 (145)
8 3cue_C Transport protein parti 92.0 2.1 7E-05 30.8 10.0 89 1-89 2-113 (159)
9 2vx8_A Nucleoporin-like protei 91.0 2.2 7.7E-05 30.9 9.4 83 11-97 53-135 (169)
10 4b93_A Vesicle-associated memb 90.9 2.1 7E-05 31.4 9.2 82 11-96 11-92 (189)
11 3cpt_A Mitogen-activated prote 90.3 3.8 0.00013 29.3 10.5 90 2-92 38-134 (143)
12 3bw6_A Synaptobrevin homolog Y 86.4 6.6 0.00022 27.4 10.3 94 2-96 7-110 (144)
13 4afi_A AP-3 complex subunit de 78.0 17 0.00058 26.3 9.8 80 11-97 63-145 (173)
14 2j3w_A Sedlin, trafficking pro 71.9 22 0.00074 24.6 11.8 93 2-95 6-112 (142)
15 1nrj_A Signal recognition part 64.2 37 0.0013 24.4 9.8 73 1-73 1-93 (158)
16 2fh5_A Signal recognition part 52.3 67 0.0023 23.6 7.6 86 1-95 10-99 (185)
17 3kyq_A YKT6, synaptobrevin hom 38.5 1.1E+02 0.0038 22.2 11.8 93 3-96 5-107 (199)
18 3hxi_C Eukaryotic translation 35.2 16 0.00056 17.8 1.1 9 53-61 2-10 (21)
19 3sbc_A Peroxiredoxin TSA1; alp 33.2 29 0.00099 25.9 2.8 34 2-35 143-179 (216)
20 3tue_A Tryparedoxin peroxidase 28.5 36 0.0012 25.4 2.7 33 3-35 148-183 (219)
21 3pes_A Uncharacterized protein 27.1 37 0.0013 21.7 2.1 30 7-38 51-81 (85)
22 3or5_A Thiol:disulfide interch 26.5 94 0.0032 20.0 4.3 33 4-37 119-151 (165)
23 2l5o_A Putative thioredoxin; s 24.3 1.2E+02 0.0041 19.3 4.5 33 4-37 109-141 (153)
24 1zye_A Thioredoxin-dependent p 22.7 83 0.0029 22.4 3.7 19 2-20 147-165 (220)
25 1xcc_A 1-Cys peroxiredoxin; un 22.3 59 0.002 23.5 2.8 34 2-35 128-164 (220)
26 1prx_A HORF6; peroxiredoxin, h 21.0 67 0.0023 23.2 2.9 20 2-21 131-150 (224)
27 3me7_A Putative uncharacterize 20.3 1.4E+02 0.0049 19.9 4.4 17 4-21 129-145 (170)
No 1
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=1.7e-44 Score=266.45 Aligned_cols=122 Identities=20% Similarity=0.302 Sum_probs=116.9
Q ss_pred CeEEEEeecCCCCceeeecCCC--CChHHHHHHHHHHhhhhcCCCCCccceEEeCCeEEEEEeeccEEEEEEecCCccHH
Q 033113 1 MIRFILLQNRQGKTRLAKYYVP--LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNEL 78 (127)
Q Consensus 1 MI~~vli~n~~Gk~rl~K~Y~~--~~~~~~~~~~~~v~~~v~~r~~~~~~~~~~~~~~ivYrrya~L~f~~~~d~~eNel 78 (127)
||+|++|+|++||+|++|||++ ++.++|+++++++|+++. |++ ||++++++++++|||||+|||++++|++||||
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r~~--~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel 88 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-RTD--SEIALLEGLTVVYKSSIDLYFYVIGSSYENEL 88 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-SCC--CCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--CCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence 8999999999999999999997 688999999999999984 543 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-hhhchhHHHHhHHHHH---HHHHhCCEeeeccc
Q 033113 79 AYLECIHLFVEILDHFF-SNVCELDLVFNFHKVC---DRIFISSSVTVSFC 125 (127)
Q Consensus 79 ~~le~I~~~ve~Ld~~f-~nVcEldii~nf~k~~---DE~i~~G~v~e~~~ 125 (127)
+++|+||.|||+||+|| |+|||+||++||+++| |||+++|+|+||.+
T Consensus 89 ~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~ 139 (153)
T 3tjz_C 89 MLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDP 139 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCH
Confidence 99999999999999999 9999999999999999 99999999999974
No 2
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=3.5e-43 Score=259.80 Aligned_cols=125 Identities=45% Similarity=0.824 Sum_probs=122.3
Q ss_pred CeEEEEeecCCCCceeeecCCCCChHHHHHHHHHHhhhhcCCCCCccceEEeCCeEEEEEeeccEEEEEEecCCccHHHH
Q 033113 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAY 80 (127)
Q Consensus 1 MI~~vli~n~~Gk~rl~K~Y~~~~~~~~~~~~~~v~~~v~~r~~~~~~~~~~~~~~ivYrrya~L~f~~~~d~~eNel~~ 80 (127)
||+|++|+|++||+|++|||.+.+.++|+++++++++++.+|++++|||+++++++++|||||+|||+++++.++|||++
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~ 80 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT 80 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 99999999999999999999999999999999999999998988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhchhHHHHhHHHHH---HHHHhCCEeeeccc
Q 033113 81 LECIHLFVEILDHFFSNVCELDLVFNFHKVC---DRIFISSSVTVSFC 125 (127)
Q Consensus 81 le~I~~~ve~Ld~~f~nVcEldii~nf~k~~---DE~i~~G~v~e~~~ 125 (127)
+|+||.|+|+|+.|||+|||+||++||+++| |||+++|+|+||.+
T Consensus 81 le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~ 128 (158)
T 1w63_Q 81 LELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSK 128 (158)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCH
Confidence 9999999999999999999999999999999 99999999999864
No 3
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=1e-42 Score=252.64 Aligned_cols=124 Identities=62% Similarity=1.073 Sum_probs=121.1
Q ss_pred CeEEEEeecCCCCceeeecCCCCChHHHHHHHHHHhhhhcCCCCCccceEEeCCeEEEEEeeccEEEEEEecCCccHHHH
Q 033113 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAY 80 (127)
Q Consensus 1 MI~~vli~n~~Gk~rl~K~Y~~~~~~~~~~~~~~v~~~v~~r~~~~~~~~~~~~~~ivYrrya~L~f~~~~d~~eNel~~ 80 (127)
||+|++|+|++||+|++|||.+++.++++++++++++++.+|++++|||+++++++++|||||+|||+++++.++|||++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~ 80 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999888887889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhchhHHHHhHHHHH---HHHHhCCEeeecc
Q 033113 81 LECIHLFVEILDHFFSNVCELDLVFNFHKVC---DRIFISSSVTVSF 124 (127)
Q Consensus 81 le~I~~~ve~Ld~~f~nVcEldii~nf~k~~---DE~i~~G~v~e~~ 124 (127)
+|+||.|+|+|+.|||+|||+||++||+++| |||+++|+|+||.
T Consensus 81 le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~ 127 (142)
T 2vgl_S 81 LEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETS 127 (142)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCC
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcC
Confidence 9999999999999999999999999999999 9999999999983
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=9e-33 Score=230.29 Aligned_cols=122 Identities=13% Similarity=0.180 Sum_probs=107.8
Q ss_pred CeEEEEeecCCCCceeeecCCCCChHHHHHHHHHHhhhhcC-CCCCccceEEeCCeEEEEEeeccEEEEEEecCCccHHH
Q 033113 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVN-RDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELA 79 (127)
Q Consensus 1 MI~~vli~n~~Gk~rl~K~Y~~~~~~~~~~~~~~v~~~v~~-r~~~~~~~~~~~~~~ivYrrya~L~f~~~~d~~eNel~ 79 (127)
||+|++|+|++||+|++|||.+...+.. ....++.+.+ |+.+++|++++++++++|+||++|||+++++.++|||+
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~---~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 77 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNA---VDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM 77 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHH---HHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhH---HHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 9999999999999999999997433221 2233344554 44467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhchhHHHHhHHHHH---HHHHhCCEeeeccc
Q 033113 80 YLECIHLFVEILDHFFSNVCELDLVFNFHKVC---DRIFISSSVTVSFC 125 (127)
Q Consensus 80 ~le~I~~~ve~Ld~~f~nVcEldii~nf~k~~---DE~i~~G~v~e~~~ 125 (127)
++|+||.|+|+|+.|||+|||+||++||+++| |||+++|++++|..
T Consensus 78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~ 126 (435)
T 2vgl_M 78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSET 126 (435)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCH
Confidence 99999999999999999999999999999999 99999999999864
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.97 E-value=1.6e-32 Score=228.12 Aligned_cols=122 Identities=9% Similarity=0.135 Sum_probs=107.8
Q ss_pred CeEEEEeecCCCCceeeecCCCCChHHHHHHHHHHhhhhcCC-C-CCccceEEeCCeEEEEEeeccEEEEEEecCCccHH
Q 033113 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNR-D-PKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNEL 78 (127)
Q Consensus 1 MI~~vli~n~~Gk~rl~K~Y~~~~~~~~~~~~~~v~~~v~~r-~-~~~~~~~~~~~~~ivYrrya~L~f~~~~d~~eNel 78 (127)
||+|++|+|++||+|++|||.+...+. .....++.+.+| + .++||++++++++++|++|++|||+++++.++|||
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~---~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l 78 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVDMS---EVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVS 78 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCTTT---THHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTH
T ss_pred ceEEEEEECCCCCEEEEEecCCCCChH---HHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHH
Confidence 899999999999999999998643332 233344445544 2 46799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhHHHHhHHHHH---HHHHhCCEeeeccc
Q 033113 79 AYLECIHLFVEILDHFFSNVCELDLVFNFHKVC---DRIFISSSVTVSFC 125 (127)
Q Consensus 79 ~~le~I~~~ve~Ld~~f~nVcEldii~nf~k~~---DE~i~~G~v~e~~~ 125 (127)
+++|+||.|+++|+.|||+|||+||++||+++| |||+++|++++|..
T Consensus 79 ~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~ 128 (423)
T 1w63_M 79 LVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDS 128 (423)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCH
Confidence 999999999999999999999999999999999 99999999999864
No 6
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.89 E-value=0.21 Score=36.81 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=67.3
Q ss_pred CeEEEEeecCCCCceeeecCCCCC-----hHHHHHHHHHHhhhhcCCCCCccceEEeCCeEEEEEeeccEEEEEEecCCc
Q 033113 1 MIRFILLQNRQGKTRLAKYYVPLE-----DSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITD 75 (127)
Q Consensus 1 MI~~vli~n~~Gk~rl~K~Y~~~~-----~~~~~~~~~~v~~~v~~r~~~~~~~~~~~~~~ivYrrya~L~f~~~~d~~e 75 (127)
||.+.+|.-....+.|+.+++..+ ..+-+...+.+.+++.+.++..+. ++.+++.+.|.+-.++.+++++|.+-
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s-~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCT-LEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEE-EEETTEEEEEEEETTEEEEEEEETTS
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEE-EEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 788888866555677888776432 233455566666665432333343 46799999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhh
Q 033113 76 NELAYLECIHLFVEILDHFFS 96 (127)
Q Consensus 76 Nel~~le~I~~~ve~Ld~~f~ 96 (127)
..-....+|..+.+-+..-|+
T Consensus 81 p~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhcc
Confidence 988888888777666655554
No 7
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=92.74 E-value=1.8 Score=30.49 Aligned_cols=78 Identities=13% Similarity=0.042 Sum_probs=48.1
Q ss_pred CeEEEEeecCCCCceeeecCCCC-----C-hHHHHHHHHHHhh------hhcCCCCCc-cceEEeCCeEEE-EEeeccEE
Q 033113 1 MIRFILLQNRQGKTRLAKYYVPL-----E-DSEKHKVEYEVHR------LVVNRDPKF-TNFVEFRTHKVI-YRRYAGLF 66 (127)
Q Consensus 1 MI~~vli~n~~Gk~rl~K~Y~~~-----~-~~~~~~~~~~v~~------~v~~r~~~~-~~~~~~~~~~iv-Yrrya~L~ 66 (127)
||..+.|+|++|.+...+=+.+. + .++.+.+-.-+|. ++...+.+. -.-++.+++++- |.--.++-
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiK 81 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIK 81 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCE
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCE
Confidence 58899999999999999844432 2 3334333322232 222222211 122345778885 66677999
Q ss_pred EEEEecCCccHH
Q 033113 67 FSLCVDITDNEL 78 (127)
Q Consensus 67 f~~~~d~~eNel 78 (127)
|++++|++++++
T Consensus 82 Fvl~td~~~~~i 93 (145)
T 2j3t_C 82 VVMNTDLGVGPI 93 (145)
T ss_dssp EEEEECTTCCCC
T ss_pred EEEEecCCcchH
Confidence 999999987764
No 8
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=92.02 E-value=2.1 Score=30.78 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=51.5
Q ss_pred CeEEEEeecCCCCceeeecCCCC------------ChHHHHHHHHHHhhh---hcCCC--CCccceEEe--CCeEEE-EE
Q 033113 1 MIRFILLQNRQGKTRLAKYYVPL------------EDSEKHKVEYEVHRL---VVNRD--PKFTNFVEF--RTHKVI-YR 60 (127)
Q Consensus 1 MI~~vli~n~~Gk~rl~K~Y~~~------------~~~~~~~~~~~v~~~---v~~r~--~~~~~~~~~--~~~~iv-Yr 60 (127)
+|..+.|+|+.|.+...+=|.+. +..+.+.+-.-+|.+ +.+-+ ...+.|..+ +.+++- |.
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~e 81 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYC 81 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEEC
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEE
Confidence 47889999999999988744321 122333333333332 11111 122345433 568885 55
Q ss_pred eeccEEEEEEecCCccHH-HHHHHHH--HHHH
Q 033113 61 RYAGLFFSLCVDITDNEL-AYLECIH--LFVE 89 (127)
Q Consensus 61 rya~L~f~~~~d~~eNel-~~le~I~--~~ve 89 (127)
--.++-|++++|..++++ .+|.-|| .+|+
T Consensus 82 T~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 82 TASGLWFVLLSDFKQQSYTQVLQYIYSHIYVK 113 (159)
T ss_dssp CSSCCEEEEECCSSSSCTHHHHHHHHHHHHHH
T ss_pred eCCCCEEEEEeCCCcchHHHHHHHHHHHHHHH
Confidence 566899999999988766 4444444 4444
No 9
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=91.03 E-value=2.2 Score=30.92 Aligned_cols=83 Identities=11% Similarity=0.032 Sum_probs=61.5
Q ss_pred CCCceeeecCCCCChHHHHHHHHHHhhhhcCCCCCccceEEeCCeEEEEEeeccEEEEEEecCCccHHHHHHHHHHHHHH
Q 033113 11 QGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEI 90 (127)
Q Consensus 11 ~Gk~rl~K~Y~~~~~~~~~~~~~~v~~~v~~r~~~~~~~~~~~~~~ivYrrya~L~f~~~~d~~eNel~~le~I~~~ve~ 90 (127)
+|.+.|+.+-.. ....+...+.+.+++..++++ +. ++.+++.+.|..-.+|.+++++|.+-.-.....+|..+.+-
T Consensus 53 RG~~VLae~t~~--~gnf~~iak~ll~kl~~~~~r-~s-~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~e 128 (169)
T 2vx8_A 53 RGTTILAKHAWC--GGNFLEVTEQILAKIPSENNK-LT-YSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 128 (169)
T ss_dssp ETTEEEEEEESS--CBSHHHHHHHHHTTSCSSCEE-EE-EEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeccC--CCCHHHHHHHHHhhCCCCCCc-eE-EEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHH
Confidence 377889986332 124555667777766543333 33 56799999999889999999999999988899988887777
Q ss_pred HHHHhhh
Q 033113 91 LDHFFSN 97 (127)
Q Consensus 91 Ld~~f~n 97 (127)
+.+-|++
T Consensus 129 F~~~y~~ 135 (169)
T 2vx8_A 129 FQTTYGS 135 (169)
T ss_dssp HHHHHTT
T ss_pred HHHHhhh
Confidence 7776664
No 10
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=90.87 E-value=2.1 Score=31.36 Aligned_cols=82 Identities=10% Similarity=-0.009 Sum_probs=56.1
Q ss_pred CCCceeeecCCCCChHHHHHHHHHHhhhhcCCCCCccceEEeCCeEEEEEeeccEEEEEEecCCccHHHHHHHHHHHHHH
Q 033113 11 QGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEI 90 (127)
Q Consensus 11 ~Gk~rl~K~Y~~~~~~~~~~~~~~v~~~v~~r~~~~~~~~~~~~~~ivYrrya~L~f~~~~d~~eNel~~le~I~~~ve~ 90 (127)
.|.+.|+.|=.. + ..-..+.+.+..++.+ ++..+ -++.+++.+.|.+-.++.+++++|.+-..-....+|..+-+-
T Consensus 11 rg~~iLae~t~~-~-gnf~~ia~~iL~kip~-~~~k~-s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~e 86 (189)
T 4b93_A 11 RGTTILAKHAWC-G-GNFLEVTEQILAKIPS-ENNKL-TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 86 (189)
T ss_dssp ETTEEEEEEESS-E-ECHHHHHHHHHTTCCS-SSEEE-EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred eCCEEEEeCCCC-C-CCHHHHHHHHHHhCCC-CCCeE-EEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHH
Confidence 489999997322 1 2233344444444322 22223 356899999999999999999999999988888888777666
Q ss_pred HHHHhh
Q 033113 91 LDHFFS 96 (127)
Q Consensus 91 Ld~~f~ 96 (127)
+.+-|+
T Consensus 87 F~~~~~ 92 (189)
T 4b93_A 87 FQTTYG 92 (189)
T ss_dssp HHHHHG
T ss_pred HHhhcc
Confidence 655554
No 11
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=90.25 E-value=3.8 Score=29.34 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=63.6
Q ss_pred eEEEEeecCCCCceeeecCCCC-ChHHHHHHHHHHhhhhcC------CCCCccceEEeCCeEEEEEeeccEEEEEEecCC
Q 033113 2 IRFILLQNRQGKTRLAKYYVPL-EDSEKHKVEYEVHRLVVN------RDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDIT 74 (127)
Q Consensus 2 I~~vli~n~~Gk~rl~K~Y~~~-~~~~~~~~~~~v~~~v~~------r~~~~~~~~~~~~~~ivYrrya~L~f~~~~d~~ 74 (127)
+++++|-|++|-+.+.--.+.. ..+-+..++.. |..... =+.+.+-+..+.++.+|.-....|++.+++.++
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsT-f~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~ 116 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLST-FALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSS 116 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHH-HHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhh-HHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCC
Confidence 5799999999999887665543 33344455554 444322 123335566689999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 033113 75 DNELAYLECIHLFVEILD 92 (127)
Q Consensus 75 eNel~~le~I~~~ve~Ld 92 (127)
.|--+++++=+.+...|.
T Consensus 117 aNtG~Il~Le~~L~p~l~ 134 (143)
T 3cpt_A 117 ANTGLIVSLEKELAPLFE 134 (143)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCchhHhhhHHHHHHHHH
Confidence 999998887555444443
No 12
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=86.37 E-value=6.6 Score=27.38 Aligned_cols=94 Identities=13% Similarity=-0.037 Sum_probs=61.5
Q ss_pred eEEEEeecCCC--CceeeecCCC--CCh---HHHHHHHHHHhhhhcCCCC--CccceEEeCCeEEEEE-eeccEEEEEEe
Q 033113 2 IRFILLQNRQG--KTRLAKYYVP--LED---SEKHKVEYEVHRLVVNRDP--KFTNFVEFRTHKVIYR-RYAGLFFSLCV 71 (127)
Q Consensus 2 I~~vli~n~~G--k~rl~K~Y~~--~~~---~~~~~~~~~v~~~v~~r~~--~~~~~~~~~~~~ivYr-rya~L~f~~~~ 71 (127)
|-++.|+-..+ .+.|+..++- .+- ...+++...+.+.++.|.+ .++. ++.+++.+.|- +-.++.+++++
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~s-v~~~~y~fH~~~~~~gl~~l~i~ 85 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQS-IEEGNYIGHVYARSEGICGVLIT 85 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEE-EEETTEEEEEEECTTSEEEEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEE-EEeCCEEEEEEEecCCEEEEEEE
Confidence 34554543322 4567775542 222 2336666677777665542 2343 46799999888 88999999999
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHhh
Q 033113 72 DITDNELAYLECIHLFVEILDHFFS 96 (127)
Q Consensus 72 d~~eNel~~le~I~~~ve~Ld~~f~ 96 (127)
|.+=.......+|..+.+-..+-++
T Consensus 86 D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 86 DKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcc
Confidence 9999888888888766665555444
No 13
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=78.00 E-value=17 Score=26.26 Aligned_cols=80 Identities=13% Similarity=0.019 Sum_probs=55.9
Q ss_pred CCCceeeecCCCCChHHHHHHHHHHhhhhcCCCC---CccceEEeCCeEEEEEeeccEEEEEEecCCccHHHHHHHHHHH
Q 033113 11 QGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDP---KFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLF 87 (127)
Q Consensus 11 ~Gk~rl~K~Y~~~~~~~~~~~~~~v~~~v~~r~~---~~~~~~~~~~~~ivYrrya~L~f~~~~d~~eNel~~le~I~~~ 87 (127)
.|.+.|+.|=.... .-. .+.+.++.|-+ ..+ -++.+++.+.|-.-.++.+++++|.+-..-....++..+
T Consensus 63 rg~tiLAE~t~~~g--nf~----~va~~iL~kip~~~~r~-t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI 135 (173)
T 4afi_A 63 RGTTILAKHAWCGG--NFL----EVTEQILAKIPSENNKL-TYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 135 (173)
T ss_dssp ETTEEEEEEESSCC--CHH----HHHHHHHTTSCSSSEEE-EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCC--CHH----HHHHHHHHhCCCCCCeE-EEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHH
Confidence 48899998744321 112 34444444432 223 346799999999889999999999999988888888777
Q ss_pred HHHHHHHhhh
Q 033113 88 VEILDHFFSN 97 (127)
Q Consensus 88 ve~Ld~~f~n 97 (127)
-+-+.+-||+
T Consensus 136 ~~eF~~~yg~ 145 (173)
T 4afi_A 136 KKRFQTTYGS 145 (173)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHhch
Confidence 7776666664
No 14
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=71.92 E-value=22 Score=24.57 Aligned_cols=93 Identities=10% Similarity=0.135 Sum_probs=53.1
Q ss_pred eEEEEeecCCCCceeeecCCCCC---hHHHHHHHHH--Hhh------hhcCCCCCc--cceEEeCCeEEE-EEeeccEEE
Q 033113 2 IRFILLQNRQGKTRLAKYYVPLE---DSEKHKVEYE--VHR------LVVNRDPKF--TNFVEFRTHKVI-YRRYAGLFF 67 (127)
Q Consensus 2 I~~vli~n~~Gk~rl~K~Y~~~~---~~~~~~~~~~--v~~------~v~~r~~~~--~~~~~~~~~~iv-Yrrya~L~f 67 (127)
|.++.|+|++|.+...+=|.+.. ..+..++... +|. ..+..++.. ...-.++++++- |..-.++=|
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kf 85 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF 85 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEE
Confidence 68999999999999998554322 1223333321 222 222222111 111123566674 666678999
Q ss_pred EEEecCCccHHHHHHHHHHHHHHHHHHh
Q 033113 68 SLCVDITDNELAYLECIHLFVEILDHFF 95 (127)
Q Consensus 68 ~~~~d~~eNel~~le~I~~~ve~Ld~~f 95 (127)
++++|.. |+-.+-++++.+.++.-.+.
T Consensus 86 vl~~d~~-~~~~i~~~~~~iy~~Y~~~v 112 (142)
T 2j3w_A 86 IMLHDVR-QEDGIKNFFTDVYDLYIKFA 112 (142)
T ss_dssp EEEESSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCC-CcHHHHHHHHHHHHHHHHHh
Confidence 9999984 34456666666666555553
No 15
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=64.25 E-value=37 Score=24.42 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=48.4
Q ss_pred CeEEEEeecCCCCceeee-cC-CCCChHHHHHHHHHHhhhhcCCCCCc---------cceEEe-------CCeEEEEEe-
Q 033113 1 MIRFILLQNRQGKTRLAK-YY-VPLEDSEKHKVEYEVHRLVVNRDPKF---------TNFVEF-------RTHKVIYRR- 61 (127)
Q Consensus 1 MI~~vli~n~~Gk~rl~K-~Y-~~~~~~~~~~~~~~v~~~v~~r~~~~---------~~~~~~-------~~~~ivYrr- 61 (127)
||.-+.||.++|+....- -+ +..+...-.++++++...-.+|.+.. -+.+.. +++++.|.-
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 889999999999998642 11 24577788889988877644344332 235555 778887763
Q ss_pred -eccEEEEEEecC
Q 033113 62 -YAGLFFSLCVDI 73 (127)
Q Consensus 62 -ya~L~f~~~~d~ 73 (127)
=-.|||++.--+
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 446888888744
No 16
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=52.33 E-value=67 Score=23.59 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=49.3
Q ss_pred CeEEEEeecCCCCceeeecCCCCChHHHHHHHHHHhhhhc--CCCCCccceEEeCCeEEEEEe--eccEEEEEEecCCcc
Q 033113 1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVV--NRDPKFTNFVEFRTHKVIYRR--YAGLFFSLCVDITDN 76 (127)
Q Consensus 1 MI~~vli~n~~Gk~rl~K~Y~~~~~~~~~~~~~~v~~~v~--~r~~~~~~~~~~~~~~ivYrr--ya~L~f~~~~d~~eN 76 (127)
|+..+-|+++-|=..-+ |.+.+. -....+..+.+.|+ -|... +-.+++++++-|+. =.+|.|+++--.
T Consensus 10 ~~D~~~IfTkGGvVLWs--~~~~~~-~~~~~IN~LIr~VlLEER~~~--~~y~~d~ytlkW~l~NEl~LVFVvVYQ~--- 81 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWC--FQGVSD-SCTGPVNALIRSVLLQERGGN--NSFTHEALTLKYKLDNQFELVFVVGFQK--- 81 (185)
T ss_dssp SCSEEEEEETTSBEEEE--EBTTTB-SCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESC---
T ss_pred ceeEEEEEeCCeEEEEe--ecCCcc-cccchHHHHHHHhhhccccCC--CceeEcCeEEEEEEeccCCEEEEEEEcc---
Confidence 67789999999988866 322211 11223444545433 24432 23567999998876 457888888765
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 033113 77 ELAYLECIHLFVEILDHFF 95 (127)
Q Consensus 77 el~~le~I~~~ve~Ld~~f 95 (127)
+.-|..|..|.+.+.+-|
T Consensus 82 -iL~L~YiD~LL~~v~~~F 99 (185)
T 2fh5_A 82 -ILTLTYVDKLIDDVHRLF 99 (185)
T ss_dssp -GGGHHHHHHHHHHHHHHH
T ss_pred -cccchHHHHHHHHHHHHH
Confidence 455555555555555555
No 17
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=38.50 E-value=1.1e+02 Score=22.21 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=58.4
Q ss_pred EEEEeecCCCC-c-eeeecCC-----CCChHHHHHHHHHHhhhhcCCCCC--ccceEEeCCeEEE-EEeeccEEEEEEec
Q 033113 3 RFILLQNRQGK-T-RLAKYYV-----PLEDSEKHKVEYEVHRLVVNRDPK--FTNFVEFRTHKVI-YRRYAGLFFSLCVD 72 (127)
Q Consensus 3 ~~vli~n~~Gk-~-rl~K~Y~-----~~~~~~~~~~~~~v~~~v~~r~~~--~~~~~~~~~~~iv-Yrrya~L~f~~~~d 72 (127)
-++.++.+.|+ + .|+.-|+ ...-+..+.+..=+-+.+++|.+. .+. ++.+++.+. |.+-.++.+++++|
T Consensus 5 ~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s-~~~~~y~fH~y~~~~gl~yl~itd 83 (199)
T 3kyq_A 5 YSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRAS-VKEQEYLCHVYVRSDSLAGVVIAD 83 (199)
T ss_dssp EEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEE-EECSSEEEEEEECTTSEEEEEEEE
T ss_pred EEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEE-EEeCCEEEEEEEecCCEEEEEEEC
Confidence 45666654433 3 3444333 222333444444334455555433 233 457899998 99999999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHHHhh
Q 033113 73 ITDNELAYLECIHLFVEILDHFFS 96 (127)
Q Consensus 73 ~~eNel~~le~I~~~ve~Ld~~f~ 96 (127)
.+-..-....+|..+-+-+.+-++
T Consensus 84 ~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 84 SEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999988888888776665555554
No 18
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=35.22 E-value=16 Score=17.78 Aligned_cols=9 Identities=33% Similarity=0.781 Sum_probs=7.5
Q ss_pred CCeEEEEEe
Q 033113 53 RTHKVIYRR 61 (127)
Q Consensus 53 ~~~~ivYrr 61 (127)
++++++|.|
T Consensus 2 GGTrIiYdR 10 (21)
T 3hxi_C 2 GSGRIIYDR 10 (26)
T ss_pred CceEEEEeH
Confidence 678999987
No 19
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=33.18 E-value=29 Score=25.86 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=24.7
Q ss_pred eEEEEeecCCCCceeeecCCCC---ChHHHHHHHHHH
Q 033113 2 IRFILLQNRQGKTRLAKYYVPL---EDSEKHKVEYEV 35 (127)
Q Consensus 2 I~~vli~n~~Gk~rl~K~Y~~~---~~~~~~~~~~~v 35 (127)
.++++|+|++|+.|..-+|... +.+|--|.++.+
T Consensus 143 ~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~Al 179 (216)
T 3sbc_A 143 LRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF 179 (216)
T ss_dssp CEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred eeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 3789999999999999887632 455555555554
No 20
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=28.53 E-value=36 Score=25.37 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=23.2
Q ss_pred EEEEeecCCCCceeeecCCCC---ChHHHHHHHHHH
Q 033113 3 RFILLQNRQGKTRLAKYYVPL---EDSEKHKVEYEV 35 (127)
Q Consensus 3 ~~vli~n~~Gk~rl~K~Y~~~---~~~~~~~~~~~v 35 (127)
++.+|+|++|+.|..-+|... ..+|--+.++.+
T Consensus 148 R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aL 183 (219)
T 3tue_A 148 RGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAF 183 (219)
T ss_dssp EEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred EEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence 789999999999999777532 444444444443
No 21
>3pes_A Uncharacterized protein GP49; PSI2, structural genomics, protein structure initiative, MID center for structural genomics, MCSG; 1.30A {Pseudomonas phage yua}
Probab=27.07 E-value=37 Score=21.73 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=23.7
Q ss_pred eecCCCCceeeecCC-CCChHHHHHHHHHHhhh
Q 033113 7 LQNRQGKTRLAKYYV-PLEDSEKHKVEYEVHRL 38 (127)
Q Consensus 7 i~n~~Gk~rl~K~Y~-~~~~~~~~~~~~~v~~~ 38 (127)
+.++.|+ .+.|.+ .++..+|.+++.+||..
T Consensus 51 i~DRRGR--~A~WLE~K~T~~~r~RI~~~i~~~ 81 (85)
T 3pes_A 51 VRDRRGR--PAPWLERKLTEAERERIDQAVFDR 81 (85)
T ss_dssp EECTTSC--BCHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eeeccCC--ccHHHHhHhhHHHHHHHHHHHHHH
Confidence 4566664 478875 68999999999999874
No 22
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=26.51 E-value=94 Score=20.05 Aligned_cols=33 Identities=6% Similarity=0.049 Sum_probs=22.2
Q ss_pred EEEeecCCCCceeeecCCCCChHHHHHHHHHHhh
Q 033113 4 FILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHR 37 (127)
Q Consensus 4 ~vli~n~~Gk~rl~K~Y~~~~~~~~~~~~~~v~~ 37 (127)
.++++|++|+.+ .++....+.++-.+.++++.+
T Consensus 119 ~~~lid~~G~i~-~~~~g~~~~~~l~~~l~~~l~ 151 (165)
T 3or5_A 119 TSFVIDASGNVS-GVIVGPRSKADFDRIVKMALG 151 (165)
T ss_dssp EEEEECTTSBEE-EEECSCCCHHHHHHHHHHHHC
T ss_pred eEEEECCCCcEE-EEEcCCCCHHHHHHHHHHHHh
Confidence 578999999986 455555666665555555544
No 23
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=24.28 E-value=1.2e+02 Score=19.29 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=20.3
Q ss_pred EEEeecCCCCceeeecCCCCChHHHHHHHHHHhh
Q 033113 4 FILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHR 37 (127)
Q Consensus 4 ~vli~n~~Gk~rl~K~Y~~~~~~~~~~~~~~v~~ 37 (127)
.++++|++|+.+ .+|....+.++-.+.++++.+
T Consensus 109 ~~~lid~~G~i~-~~~~g~~~~~~l~~~l~~ll~ 141 (153)
T 2l5o_A 109 TSVLIGKKGEIL-KTYVGEPDFGKLYQEIDTAWR 141 (153)
T ss_dssp EEEEECSSSCCC-EEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCcEE-EEEcCCCCHHHHHHHHHHHHH
Confidence 468899999875 344444555555555555444
No 24
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=22.68 E-value=83 Score=22.40 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=14.7
Q ss_pred eEEEEeecCCCCceeeecC
Q 033113 2 IRFILLQNRQGKTRLAKYY 20 (127)
Q Consensus 2 I~~vli~n~~Gk~rl~K~Y 20 (127)
+..++++|++|+.+.....
T Consensus 147 ~P~~~liD~~G~I~~~~~g 165 (220)
T 1zye_A 147 LRGLFIIDPNGVIKHLSVN 165 (220)
T ss_dssp CEEEEEECTTSBEEEEEEE
T ss_pred cceEEEECCCCEEEEEEec
Confidence 3478999999999876543
No 25
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=22.27 E-value=59 Score=23.47 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=22.3
Q ss_pred eEEEEeecCCCCceeeecCCC---CChHHHHHHHHHH
Q 033113 2 IRFILLQNRQGKTRLAKYYVP---LEDSEKHKVEYEV 35 (127)
Q Consensus 2 I~~vli~n~~Gk~rl~K~Y~~---~~~~~~~~~~~~v 35 (127)
+.+++|+|++|+.|..-.|.. .+.++-.+.++.+
T Consensus 128 ~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l 164 (220)
T 1xcc_A 128 CRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL 164 (220)
T ss_dssp CEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred cceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 357899999999998876642 2344444444443
No 26
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=21.05 E-value=67 Score=23.24 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.7
Q ss_pred eEEEEeecCCCCceeeecCC
Q 033113 2 IRFILLQNRQGKTRLAKYYV 21 (127)
Q Consensus 2 I~~vli~n~~Gk~rl~K~Y~ 21 (127)
+.+++|+|++|+.|..-.|.
T Consensus 131 ~p~~fiID~~G~I~~~~~~~ 150 (224)
T 1prx_A 131 ARVVFVFGPDKKLKLSILYP 150 (224)
T ss_dssp CCEEEEECTTSBEEEEEECC
T ss_pred ceEEEEECCCCEEEEEEecC
Confidence 45789999999999887664
No 27
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=20.33 E-value=1.4e+02 Score=19.94 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=12.8
Q ss_pred EEEeecCCCCceeeecCC
Q 033113 4 FILLQNRQGKTRLAKYYV 21 (127)
Q Consensus 4 ~vli~n~~Gk~rl~K~Y~ 21 (127)
.++++|++|+.+-. |+.
T Consensus 129 ~~~lID~~G~i~~~-~~g 145 (170)
T 3me7_A 129 VVVVLSPELQIKDY-IYG 145 (170)
T ss_dssp EEEEECTTSBEEEE-EES
T ss_pred eEEEECCCCeEEEE-EeC
Confidence 57899999998744 444
Done!