Query 033114
Match_columns 127
No_of_seqs 115 out of 375
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rui_B Autophagy-related prote 100.0 6.8E-55 2.3E-59 312.8 14.0 118 5-122 1-118 (118)
2 3m95_A Autophagy related prote 100.0 1.4E-54 4.8E-59 313.8 12.9 119 5-123 7-125 (125)
3 3h9d_A ATG8, microtubule-assoc 100.0 2.4E-53 8.2E-58 305.1 12.3 114 9-122 6-119 (119)
4 1eo6_A GATE-16, golgi-associat 100.0 1.5E-51 5.1E-56 294.8 13.0 117 7-123 1-117 (117)
5 2zjd_A Microtubule-associated 100.0 9.2E-52 3.2E-56 300.8 9.8 118 7-125 9-128 (130)
6 2r2q_A Gamma-aminobutyric acid 100.0 3.7E-47 1.3E-51 269.3 12.4 109 9-117 2-110 (110)
7 4gdk_A Ubiquitin-like protein 100.0 8.8E-35 3E-39 200.0 10.4 86 36-122 5-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 2.8E-34 9.5E-39 199.2 9.0 85 32-122 11-96 (96)
9 3w1s_C Ubiquitin-like protein 100.0 1.3E-32 4.3E-37 189.3 9.4 85 32-122 6-91 (91)
10 2dyo_A Autophagy protein 5; ub 95.5 0.021 7.3E-07 45.8 5.7 98 15-116 183-285 (297)
11 4gdk_B Autophagy protein 5; pr 95.2 0.06 2.1E-06 42.8 7.3 99 15-117 160-271 (275)
12 3vqi_A ATG5; autophagy, E3-lik 94.7 0.028 9.6E-07 44.6 4.1 74 31-114 196-272 (274)
13 3goe_A DNA repair protein RAD6 93.3 0.12 4.1E-06 34.2 4.4 46 52-97 21-66 (82)
14 2uyz_B Small ubiquitin-related 81.9 3.4 0.00012 25.2 5.2 59 53-115 16-74 (79)
15 3a4r_A Nfatc2-interacting prot 81.5 4.3 0.00015 25.5 5.7 47 53-100 21-67 (79)
16 1oey_A P67-PHOX, neutrophil cy 80.4 6.2 0.00021 25.8 6.2 57 55-113 18-78 (83)
17 2k8h_A Small ubiquitin protein 79.6 9.6 0.00033 25.8 7.3 62 32-100 24-85 (110)
18 1wh3_A 59 kDa 2'-5'-oligoadeny 78.4 6.2 0.00021 24.4 5.7 75 32-117 5-80 (87)
19 1wy8_A NP95-like ring finger p 77.8 5.1 0.00017 25.0 5.1 57 57-117 26-82 (89)
20 1we6_A Splicing factor, putati 76.8 10 0.00035 25.0 6.7 80 27-116 20-103 (111)
21 3mtn_B UBA80, ubcep1, ubiquiti 75.9 3.2 0.00011 25.4 3.7 60 54-117 17-76 (85)
22 2hj8_A Interferon-induced 17 k 74.7 6 0.00021 24.9 4.9 60 54-117 18-77 (88)
23 1uh6_A Ubiquitin-like 5; beta- 74.3 7.7 0.00026 26.0 5.5 59 54-116 42-100 (100)
24 1we7_A SF3A1 protein; structur 74.1 16 0.00056 24.1 8.4 85 27-116 18-107 (115)
25 3a9j_A Ubiquitin; protein comp 73.5 3.8 0.00013 24.4 3.5 58 54-116 14-72 (76)
26 3n3k_B Ubiquitin; hydrolase, p 73.2 3 0.0001 25.6 3.0 60 54-117 17-76 (85)
27 1ndd_A NEDD8, protein (ubiquit 73.1 4.3 0.00015 24.1 3.7 58 54-116 14-72 (76)
28 2kvr_A Ubiquitin carboxyl-term 72.1 3.8 0.00013 28.6 3.7 54 53-106 58-119 (130)
29 2dzi_A Ubiquitin-like protein 71.5 4.1 0.00014 24.7 3.3 45 54-99 21-65 (81)
30 1wyw_B Ubiquitin-like protein 70.7 6.7 0.00023 25.3 4.4 76 31-116 18-93 (97)
31 3plu_A Ubiquitin-like modifier 70.4 9.3 0.00032 25.4 5.1 81 24-115 11-92 (93)
32 1yqb_A Ubiquilin 3; structural 69.8 7.9 0.00027 25.2 4.7 75 32-117 20-94 (100)
33 4dwf_A HLA-B-associated transc 68.6 6 0.0002 24.7 3.8 75 32-117 3-77 (90)
34 1ip9_A BEM1 protein; ubiquitin 67.9 5.9 0.0002 26.2 3.6 31 55-86 26-56 (85)
35 3dbh_I NEDD8; cell cycle, acti 67.9 5.4 0.00018 24.6 3.4 58 54-115 26-83 (88)
36 2l7r_A Ubiquitin-like protein 67.8 11 0.00037 24.1 5.0 71 32-115 17-88 (93)
37 1wx7_A Ubiquilin 3; ubiquitin- 67.7 14 0.0005 23.9 5.7 59 54-117 30-89 (106)
38 2jxx_A Nfatc2-interacting prot 67.1 14 0.00048 24.5 5.5 64 31-100 22-85 (97)
39 2kk8_A Uncharacterized protein 66.8 8.8 0.0003 24.2 4.3 57 54-114 24-81 (84)
40 2bwf_A Ubiquitin-like protein 66.2 7.8 0.00027 23.1 3.8 57 54-115 17-74 (77)
41 3phx_B Ubiquitin-like protein 66.1 8.3 0.00028 23.4 4.0 57 54-115 18-75 (79)
42 3k9o_B Ubiquitin, UBB+1; E2-25 65.2 6.1 0.00021 24.9 3.3 60 54-117 15-74 (96)
43 4eew_A Large proline-rich prot 64.1 8.3 0.00029 23.9 3.8 62 31-99 14-75 (88)
44 1yx5_B Ubiquitin; proteasome, 63.9 7.2 0.00025 24.9 3.5 59 54-117 14-73 (98)
45 3v6c_B Ubiquitin; structural g 63.1 7.5 0.00026 24.5 3.4 45 54-99 31-75 (91)
46 2kan_A Uncharacterized protein 63.0 14 0.00047 23.7 4.7 74 32-117 13-88 (94)
47 1wx8_A Riken cDNA 4931431F19; 62.6 13 0.00044 23.5 4.5 71 33-115 16-87 (96)
48 4fbj_B NEDD8; effector-HOST ta 62.0 7.4 0.00025 24.5 3.2 59 54-116 14-72 (88)
49 1wm3_A Ubiquitin-like protein 61.5 14 0.00046 22.6 4.3 47 52-99 13-59 (72)
50 2faz_A Ubiquitin-like containi 61.4 7.7 0.00026 23.4 3.1 56 55-115 18-75 (78)
51 4dbg_A Ranbp-type and C3HC4-ty 61.4 30 0.001 23.3 6.3 61 34-99 24-84 (105)
52 4hcn_B Polyubiquitin, ubiquiti 60.1 8.4 0.00029 24.8 3.3 73 32-115 20-93 (98)
53 2io0_B Small ubiquitin-related 58.6 20 0.0007 23.1 5.0 48 52-100 17-64 (91)
54 2kd0_A LRR repeats and ubiquit 58.3 8.6 0.00029 24.2 3.0 56 55-115 26-82 (85)
55 1sif_A Ubiquitin; hydrophobic 58.2 9.7 0.00033 23.9 3.3 58 54-116 23-81 (88)
56 3fdj_A DEGV family protein; GU 57.6 25 0.00086 27.1 6.2 55 51-118 32-86 (278)
57 1wju_A NEDD8 ultimate buster-1 57.2 17 0.00058 24.3 4.5 45 54-99 33-77 (100)
58 1wgd_A Homocysteine-responsive 56.8 18 0.00063 22.7 4.5 76 33-116 6-85 (93)
59 1ttn_A DC-UBP, dendritic cell- 56.7 26 0.00088 22.8 5.3 60 54-118 37-97 (106)
60 2lxa_A Ubiquitin-like protein 56.6 26 0.00091 22.3 5.2 43 57-100 20-63 (87)
61 1x1m_A Ubiquitin-like protein 55.3 33 0.0011 22.3 5.7 54 60-118 44-101 (107)
62 3m63_B Ubiquitin domain-contai 55.2 7.4 0.00025 25.5 2.4 61 32-100 26-86 (101)
63 2ojr_A Ubiquitin; lanthide-bin 53.9 16 0.00054 24.0 3.9 57 54-115 49-106 (111)
64 1v5t_A 8430435I17RIK protein; 53.5 26 0.00088 22.0 4.8 60 56-118 23-84 (90)
65 1v5o_A 1700011N24RIK protein; 53.3 13 0.00046 24.0 3.4 58 55-116 26-84 (102)
66 3vdz_A Ubiquitin-40S ribosomal 53.1 12 0.00042 24.7 3.2 57 54-115 49-106 (111)
67 2io1_B Small ubiquitin-related 52.6 18 0.00061 23.5 3.9 62 32-100 5-66 (94)
68 2klc_A Ubiquilin-1; ubiquitin- 52.1 13 0.00045 24.1 3.2 73 32-116 23-96 (101)
69 1vd2_A Protein kinase C, IOTA 51.8 47 0.0016 21.7 7.5 61 53-113 18-86 (89)
70 1yfb_A Transition state regula 51.1 15 0.00051 22.2 3.1 21 68-88 28-48 (59)
71 3b08_A Polyubiquitin-C, ubiqui 51.1 36 0.0012 22.7 5.5 58 54-116 90-148 (152)
72 1mvf_D MAZE protein, PEMI-like 50.0 11 0.00036 23.7 2.4 51 68-124 19-76 (82)
73 3rt3_B Ubiquitin-like protein 49.6 19 0.00066 24.7 3.9 59 54-116 16-76 (159)
74 3m62_B UV excision repair prot 49.4 9.8 0.00034 25.0 2.3 61 55-119 16-76 (106)
75 3nyi_A FAT acid-binding protei 48.9 52 0.0018 25.5 6.8 60 50-118 34-95 (297)
76 1wxv_A BAG-family molecular ch 48.3 26 0.0009 21.9 4.2 74 33-118 6-86 (92)
77 2d07_B Ubiquitin-like protein 47.8 25 0.00087 22.6 4.1 62 32-100 15-76 (93)
78 1j8c_A Ubiquitin-like protein 47.7 19 0.00066 24.4 3.6 59 54-117 45-104 (125)
79 2wyq_A HHR23A, UV excision rep 47.1 45 0.0015 20.1 7.1 76 32-118 3-82 (85)
80 2e5i_A Heterogeneous nuclear r 46.9 18 0.00062 24.6 3.4 30 77-106 21-51 (124)
81 2kdi_A Ubiquitin, vacuolar pro 46.9 13 0.00045 24.8 2.6 59 55-118 24-83 (114)
82 2l66_A SSO7C4, transcriptional 46.8 20 0.00068 20.7 3.1 21 68-88 18-38 (53)
83 3b1l_X E3 ubiquitin-protein li 52.3 4.2 0.00014 24.5 0.0 45 55-100 15-59 (76)
84 1v86_A DNA segment, CHR 7, way 45.7 15 0.0005 23.6 2.6 45 54-100 30-74 (95)
85 3b08_A Polyubiquitin-C, ubiqui 44.5 16 0.00055 24.5 2.8 58 54-116 14-72 (152)
86 2dzm_A FAS-associated factor 1 44.5 34 0.0012 22.5 4.4 61 55-119 23-84 (100)
87 2kjr_A CG11242; UBL, ubiquitin 43.6 63 0.0022 20.8 7.6 64 32-99 13-81 (95)
88 2fnj_B Transcription elongatio 43.2 39 0.0013 23.2 4.6 64 56-122 17-86 (118)
89 2kc2_A Talin-1, F1; FERM, adhe 43.1 41 0.0014 23.4 4.8 40 47-87 18-57 (128)
90 1x5p_A Negative elongation fac 43.0 25 0.00085 21.8 3.4 34 84-118 18-59 (97)
91 2i1s_A Hypothetical protein; m 42.9 51 0.0018 23.7 5.5 29 52-80 23-51 (188)
92 3gs2_A E3 ubiquitin-protein li 42.1 81 0.0028 21.6 7.6 83 35-117 4-109 (111)
93 1pzx_A Hypothetical protein AP 42.1 52 0.0018 25.3 5.8 57 51-118 35-92 (289)
94 1pqs_A Cell division control p 41.6 17 0.00059 23.2 2.4 23 55-77 6-28 (77)
95 1wz0_A Ubiquitin-like protein 41.0 35 0.0012 22.6 4.0 62 32-100 22-83 (104)
96 1q1o_A Cell division control p 40.9 13 0.00043 25.1 1.7 25 53-77 25-49 (98)
97 2bz2_A Negative elongation fac 40.2 23 0.00078 23.4 3.0 35 84-119 42-84 (121)
98 2eke_C Ubiquitin-like protein 40.0 35 0.0012 22.8 3.9 48 52-100 42-89 (106)
99 1uel_A HHR23B, UV excision rep 39.1 29 0.001 21.9 3.3 61 54-119 14-78 (95)
100 2kj6_A Tubulin folding cofacto 38.9 78 0.0027 20.5 8.1 63 33-99 13-81 (97)
101 3jr7_A Uncharacterized EGV fam 38.6 78 0.0027 24.6 6.3 56 51-118 52-107 (298)
102 3zzy_A Polypyrimidine tract-bi 38.3 26 0.0009 24.2 3.2 33 74-106 21-54 (130)
103 1v2y_A 3300001G02RIK protein; 37.6 39 0.0013 22.5 3.8 66 56-124 23-103 (105)
104 4a3p_A Ubiquitin carboxyl-term 37.3 98 0.0033 22.7 6.4 60 54-116 143-208 (217)
105 1j0g_A Hypothetical protein 18 37.2 88 0.003 20.6 6.1 58 48-106 21-79 (92)
106 3rt3_B Ubiquitin-like protein 36.7 40 0.0014 23.0 3.9 58 54-116 95-153 (159)
107 1wjn_A Tubulin-folding protein 35.5 51 0.0018 20.8 4.1 32 55-86 27-59 (97)
108 1v6e_A Cytoskeleton-associated 35.1 84 0.0029 19.7 5.8 47 33-84 6-53 (95)
109 3u5e_m 60S ribosomal protein L 34.5 8.3 0.00028 26.2 0.0 45 55-100 15-59 (128)
110 2kdb_A Homocysteine-responsive 34.5 33 0.0011 22.4 3.0 65 32-102 21-88 (99)
111 1sjr_A Polypyrimidine tract-bi 34.2 59 0.002 23.3 4.6 42 77-118 42-94 (164)
112 2l32_A Small archaeal modifier 33.3 41 0.0014 20.8 3.2 36 55-95 15-50 (74)
113 3u30_A Ubiquitin, linear DI-ub 33.3 41 0.0014 23.4 3.6 58 54-116 34-92 (172)
114 3d2w_A TAR DNA-binding protein 33.0 47 0.0016 20.4 3.5 36 84-119 14-59 (89)
115 4b6w_A Tubulin-specific chaper 32.9 39 0.0014 21.3 3.1 32 55-86 19-50 (86)
116 2daf_A FLJ35834 protein; hypot 31.3 51 0.0018 22.7 3.7 57 55-116 31-88 (118)
117 2dt8_A DEGV family protein; fa 30.9 89 0.0031 23.9 5.4 58 51-118 33-91 (280)
118 1x4c_A Splicing factor, argini 30.2 62 0.0021 20.3 3.8 25 94-118 29-60 (108)
119 4efo_A Serine/threonine-protei 29.7 85 0.0029 20.6 4.4 36 53-88 26-61 (94)
120 1wf9_A NPL4 family protein; be 29.1 18 0.0006 23.8 0.9 61 55-120 21-98 (107)
121 3u5c_f 40S ribosomal protein S 29.1 12 0.0004 26.7 0.0 45 55-100 15-59 (152)
122 3fys_A Protein DEGV; fatty aci 28.8 1.3E+02 0.0046 23.5 6.2 73 34-118 36-125 (315)
123 2ylm_A Ubiquitin carboxyl-term 28.6 51 0.0017 27.8 3.9 61 54-115 150-216 (530)
124 2diu_A KIAA0430 protein; struc 27.7 95 0.0032 20.5 4.4 43 76-119 5-57 (96)
125 3tuo_A DNA-binding protein SAT 26.9 61 0.0021 22.0 3.3 68 34-103 7-93 (105)
126 2pjh_A Protein NPL4, nuclear p 26.8 35 0.0012 21.3 2.0 29 56-84 19-48 (80)
127 3q3f_A Ribonuclease/ubiquitin 26.7 49 0.0017 24.3 3.1 58 54-116 119-177 (189)
128 3beg_B Splicing factor, argini 26.6 50 0.0017 21.2 2.9 36 84-119 19-62 (115)
129 3l0w_B Monoubiquitinated proli 26.6 48 0.0017 23.5 3.0 59 54-116 14-72 (169)
130 3kyd_D Small ubiquitin-related 26.2 95 0.0032 21.1 4.3 62 32-100 38-99 (115)
131 2kzr_A Ubiquitin thioesterase 25.8 57 0.0019 20.1 2.9 58 57-117 17-78 (86)
132 2cqh_A IGF-II mRNA-binding pro 25.7 46 0.0016 20.1 2.5 17 57-73 16-32 (93)
133 3tix_A Ubiquitin-like protein 25.6 40 0.0014 25.6 2.4 83 10-100 28-115 (207)
134 2ylm_A Ubiquitin carboxyl-term 24.6 28 0.00094 29.5 1.5 51 52-102 353-410 (530)
135 4ajy_B Transcription elongatio 24.5 59 0.002 22.3 3.0 62 57-123 18-87 (118)
136 2l76_A Nfatc2-interacting prot 24.0 1E+02 0.0034 20.5 4.0 48 52-100 32-79 (95)
137 3lup_A DEGV family protein; PS 23.7 59 0.002 25.0 3.2 58 51-118 36-95 (285)
138 3cmm_A Ubiquitin-activating en 23.7 86 0.003 28.8 4.7 51 54-105 921-981 (1015)
139 2div_A TRNA selenocysteine ass 23.3 80 0.0027 19.2 3.3 9 109-117 53-61 (99)
140 1ryj_A Unknown; beta/alpha pro 23.3 57 0.0019 19.6 2.5 36 55-95 18-53 (70)
141 1vjk_A Molybdopterin convertin 23.3 52 0.0018 21.0 2.4 42 54-95 30-81 (98)
142 2rdm_A Response regulator rece 23.3 86 0.0029 19.2 3.5 54 22-77 68-124 (132)
143 2w1t_A Spovt, stage V sporulat 23.0 59 0.002 23.9 2.9 20 68-87 20-39 (178)
144 3po0_A Small archaeal modifier 22.7 38 0.0013 21.0 1.6 42 54-95 21-72 (89)
145 1wf0_A TDP-43, TAR DNA-binding 22.4 42 0.0014 20.2 1.7 26 94-119 19-53 (88)
146 2eki_A DRG 1, developmentally- 22.3 1.3E+02 0.0044 19.8 4.2 41 42-86 17-58 (93)
147 3s5o_A 4-hydroxy-2-oxoglutarat 22.3 77 0.0026 24.5 3.6 100 14-118 63-180 (307)
148 2al3_A TUG long isoform; TUG U 21.7 96 0.0033 20.3 3.5 40 48-88 17-56 (90)
149 3eb2_A Putative dihydrodipicol 21.4 57 0.002 25.2 2.7 100 14-118 53-168 (300)
150 2e5j_A Methenyltetrahydrofolat 21.4 1.1E+02 0.0036 18.7 3.6 17 57-73 27-43 (97)
151 3l21_A DHDPS, dihydrodipicolin 21.0 65 0.0022 24.9 2.9 100 14-118 64-179 (304)
152 1fm0_D Molybdopterin convertin 20.7 45 0.0016 20.1 1.6 36 58-94 23-63 (81)
153 2yxg_A DHDPS, dihydrodipicolin 20.6 69 0.0024 24.5 3.0 101 14-118 49-165 (289)
154 3h5d_A DHDPS, dihydrodipicolin 20.4 91 0.0031 24.2 3.7 99 14-117 56-171 (311)
155 3a5f_A Dihydrodipicolinate syn 20.3 72 0.0025 24.4 3.0 30 14-43 50-79 (291)
156 3b4u_A Dihydrodipicolinate syn 20.2 94 0.0032 23.8 3.7 102 14-118 52-173 (294)
157 3flu_A DHDPS, dihydrodipicolin 20.1 72 0.0025 24.5 3.0 30 14-43 56-85 (297)
158 3e96_A Dihydrodipicolinate syn 20.1 70 0.0024 24.8 3.0 29 14-42 61-89 (316)
159 3qze_A DHDPS, dihydrodipicolin 20.1 72 0.0025 24.8 3.0 30 14-43 72-101 (314)
160 2ehh_A DHDPS, dihydrodipicolin 20.1 71 0.0024 24.5 3.0 101 14-118 49-165 (294)
161 1t0y_A Tubulin folding cofacto 20.0 2E+02 0.0067 19.0 6.9 49 33-86 5-53 (122)
No 1
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=6.8e-55 Score=312.76 Aligned_cols=118 Identities=74% Similarity=1.162 Sum_probs=112.4
Q ss_pred CCCcccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEE
Q 033114 5 GMAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI 84 (127)
Q Consensus 5 ~~~~~~fK~~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFl 84 (127)
|.|+++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|+++++|||
T Consensus 1 ~~m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl 80 (118)
T 3rui_B 1 GSMKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFI 80 (118)
T ss_dssp -----CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEE
T ss_pred CCCcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033114 85 FVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 122 (127)
Q Consensus 85 yVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~~~fG 122 (127)
||||++|++|++||+||++|||+||||||+||+++|||
T Consensus 81 ~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 81 FVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp EBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred EECCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence 99999999999999999999999999999999999999
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=1.4e-54 Score=313.79 Aligned_cols=119 Identities=57% Similarity=0.997 Sum_probs=114.2
Q ss_pred CCCcccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEE
Q 033114 5 GMAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI 84 (127)
Q Consensus 5 ~~~~~~fK~~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFl 84 (127)
-+|+++||+++|||+|++|+++||+|||++||||||+++++++|.|||+|||||+++||+||+.+||++|+|++++||||
T Consensus 7 ~~~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl 86 (125)
T 3m95_A 7 HGMKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFF 86 (125)
T ss_dssp --CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEE
T ss_pred ccceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEE
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccCC
Q 033114 85 FVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 123 (127)
Q Consensus 85 yVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~~~fG~ 123 (127)
||||++|++|++||+||++|||+||||||+||+++|||+
T Consensus 87 ~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG~ 125 (125)
T 3m95_A 87 FVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 125 (125)
T ss_dssp EBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC--
T ss_pred EECCccCCccchHHHHHHHcCCCCCeEEEEecCccccCC
Confidence 999999999999999999999999999999999999994
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=2.4e-53 Score=305.14 Aligned_cols=114 Identities=54% Similarity=0.951 Sum_probs=110.9
Q ss_pred ccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC
Q 033114 9 SYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 88 (127)
Q Consensus 9 ~~fK~~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~ 88 (127)
.+||++||||+|++|+++||+|||++||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||||
T Consensus 6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033114 89 VLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 122 (127)
Q Consensus 89 ~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~~~fG 122 (127)
++|++|++||+||++|||+||||||+||+++|||
T Consensus 86 ~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 86 TVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp EECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred cCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence 9999999999999999999999999999999999
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=1.5e-51 Score=294.77 Aligned_cols=117 Identities=62% Similarity=1.043 Sum_probs=113.9
Q ss_pred CcccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033114 7 AKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 86 (127)
Q Consensus 7 ~~~~fK~~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyV 86 (127)
|+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|+++++|||||
T Consensus 1 ~~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v 80 (117)
T 1eo6_A 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV 80 (117)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred CCcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccCC
Q 033114 87 DNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 123 (127)
Q Consensus 87 n~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~~~fG~ 123 (127)
|+.+|++|++||+||++|||+||||||+||+++|||.
T Consensus 81 n~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG~ 117 (117)
T 1eo6_A 81 DKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117 (117)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC-
T ss_pred CCEecCccchHHHHHHHhCCCCCEEEEEEeCCccCCC
Confidence 9999999999999999999999999999999999994
No 5
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=9.2e-52 Score=300.81 Aligned_cols=118 Identities=37% Similarity=0.745 Sum_probs=114.3
Q ss_pred CcccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC-CCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEE-
Q 033114 7 AKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSD-IPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI- 84 (127)
Q Consensus 7 ~~~~fK~~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~-~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFl- 84 (127)
|+ +||++||||+|++|+++||+|||+|||||||++++++ +|.|+|+||+||+++||+||+.+||+||+|+++++|||
T Consensus 9 m~-~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~ 87 (130)
T 2zjd_A 9 EK-TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLL 87 (130)
T ss_dssp CC-CHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hh-HHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEE
Confidence 44 8999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccCCCC
Q 033114 85 FVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 125 (127)
Q Consensus 85 yVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~~~fG~~~ 125 (127)
||||++|++|++||+||++|||+||||||+||+++|||+-+
T Consensus 88 ~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG~~~ 128 (130)
T 2zjd_A 88 VNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMKL 128 (130)
T ss_dssp ETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHHHC-
T ss_pred EECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccCCcc
Confidence 99999999999999999999999999999999999999644
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=3.7e-47 Score=269.26 Aligned_cols=109 Identities=56% Similarity=1.029 Sum_probs=107.0
Q ss_pred ccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC
Q 033114 9 SYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 88 (127)
Q Consensus 9 ~~fK~~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~ 88 (127)
++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+++++++|||||||
T Consensus 2 ~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~ 81 (110)
T 2r2q_A 2 FQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN 81 (110)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTT
T ss_pred ccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033114 89 VLPPTGAIMSAIYEEKKDEDGFLYVTYSG 117 (127)
Q Consensus 89 ~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~ 117 (127)
.+|++|++||+||++|||+||||||+||+
T Consensus 82 ~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 82 TIPPTSATMGQLYEDNHEEDYFLYVAYSD 110 (110)
T ss_dssp BCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence 99999999999999999999999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=8.8e-35 Score=199.96 Aligned_cols=86 Identities=26% Similarity=0.441 Sum_probs=80.7
Q ss_pred cEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhhhcCCCCeEEEE
Q 033114 36 PVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKDEDGFLYVT 114 (127)
Q Consensus 36 pVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~l-p~~~~~m~~lY~~~kd~DGfLYi~ 114 (127)
.|+|.-.+.+++|.|+++||+||+++||++|+.+||+||+++++++|||||||++ |++|++||+||++|| +||||||+
T Consensus 5 Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~ 83 (91)
T 4gdk_A 5 KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLH 83 (91)
T ss_dssp EEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEE
T ss_pred eEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEE
Confidence 3566556668999999999999999999999999999999999999999999965 899999999999999 99999999
Q ss_pred ecCCcccC
Q 033114 115 YSGENTFG 122 (127)
Q Consensus 115 Ys~~~~fG 122 (127)
||+++|||
T Consensus 84 Ys~~~afG 91 (91)
T 4gdk_A 84 YCKSQAWG 91 (91)
T ss_dssp EESSCCCC
T ss_pred EeCccccC
Confidence 99999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=2.8e-34 Score=199.20 Aligned_cols=85 Identities=19% Similarity=0.400 Sum_probs=80.3
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC-CCCCccchHHHHHhhhcCCCCe
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKDEDGF 110 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~-~lp~~~~~m~~lY~~~kd~DGf 110 (127)
|+||+|++++. +++|.|+++||+||+++||++|+.+||+||+++ +||||||| .+|++|++|++||++||| |||
T Consensus 11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf 84 (96)
T 1wz3_A 11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK 84 (96)
T ss_dssp -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence 78999999887 779999999999999999999999999999998 99999999 679999999999999998 999
Q ss_pred EEEEecCCcccC
Q 033114 111 LYVTYSGENTFG 122 (127)
Q Consensus 111 LYi~Ys~~~~fG 122 (127)
|||+||+++|||
T Consensus 85 Lyi~Ys~~~afG 96 (96)
T 1wz3_A 85 LVVNYACSMAWG 96 (96)
T ss_dssp EEEEEESCSCC-
T ss_pred EEEEEeCCcccC
Confidence 999999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=99.98 E-value=1.3e-32 Score=189.29 Aligned_cols=85 Identities=14% Similarity=0.364 Sum_probs=66.7
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCC-CCCccchHHHHHhhhcCCCCe
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDEDGF 110 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~-lp~~~~~m~~lY~~~kd~DGf 110 (127)
|.||-|-. .+-+++|+|+++||+||+++||++|+.+||+||++ ++|||||||+ .|++|++||+||++|| +|||
T Consensus 6 ~~Kv~vrf--k~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~ 79 (91)
T 3w1s_C 6 IQKIQIKF--QPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE 79 (91)
T ss_dssp CCEEEEEE--EECCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred CCeEEEEE--EecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence 34544443 44589999999999999999999999999999999 6999999996 5999999999999999 7999
Q ss_pred EEEEecCCcccC
Q 033114 111 LYVTYSGENTFG 122 (127)
Q Consensus 111 LYi~Ys~~~~fG 122 (127)
|||+||+++|||
T Consensus 80 Lyv~Ys~~~afG 91 (91)
T 3w1s_C 80 LIVSYCASVAFG 91 (91)
T ss_dssp EEEEEEC---CC
T ss_pred EEEEEeCccccC
Confidence 999999999999
No 10
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=95.50 E-value=0.021 Score=45.79 Aligned_cols=98 Identities=16% Similarity=0.277 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccCCC-CCCCCccceEEecC---CCchHHHHHHHHHhhC-CCCCceEEEEEcCC
Q 033114 15 HDLEKRRAEAARIREKYPDRIPVIVEKAERS-DIPNIDKKKYLVPA---DLTVGQFVYVIRKRIK-LSAEKAIFIFVDNV 89 (127)
Q Consensus 15 ~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~-~~p~L~k~KflVp~---~~tv~~~~~~lRk~L~-l~~~~slFlyVn~~ 89 (127)
+.|++=.+=..++....+.+|||.|--.... ..+.+. -.++. ..|++++..- +..|. +-+..+..+++.+.
T Consensus 183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI 258 (297)
T 2dyo_A 183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI 258 (297)
T ss_dssp TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence 4555444445566655678999999765332 121111 11121 1266665410 22222 22344467888888
Q ss_pred CCCccchHHHHHhhhcCCCCeEEEEec
Q 033114 90 LPPTGAIMSAIYEEKKDEDGFLYVTYS 116 (127)
Q Consensus 90 lp~~~~~m~~lY~~~kd~DGfLYi~Ys 116 (127)
-|+.++.|..||++++-.||||||.-.
T Consensus 259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~ 285 (297)
T 2dyo_A 259 EIPWHMLLYDLYSKLRSFDGFLYITLV 285 (297)
T ss_dssp EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence 888999999999999999999999876
No 11
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=95.22 E-value=0.06 Score=42.76 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHhhCC-----CcccEEEEccCCCCCCCCccceEEe---cCCCchHHHHHHHHHhhC--CC---CCce
Q 033114 15 HDLEKRRAEAARIREKYP-----DRIPVIVEKAERSDIPNIDKKKYLV---PADLTVGQFVYVIRKRIK--LS---AEKA 81 (127)
Q Consensus 15 ~s~e~R~~e~~~ir~kyP-----~~ipVIvE~~~~~~~p~L~k~KflV---p~~~tv~~~~~~lRk~L~--l~---~~~s 81 (127)
+.|++=..=..++....+ .+|||.|-.. .++-|.++..-=-+ ....|++++... .|. .. ....
T Consensus 160 ~d~~~F~~in~kL~~~~~~~~~~r~IPvRiY~~-~~~~~~iQ~~v~p~~~~g~~~TLg~~L~~---~lP~lf~~~~~~~~ 235 (275)
T 4gdk_B 160 DRFDQFWAINRKLMEYPAEENGFRYIPFRIYQT-TTERPFIQKLFRPVAADGQLHTLGDLLKE---VCPSAIDPEDGEKK 235 (275)
T ss_dssp TCHHHHHHHHTGGGCCCTTSSSCSSCCEEEECT-TSSSSEECCCCCSBCTTSCBCBHHHHHHH---HCGGGCC------C
T ss_pred CCHHHHHHHHHhhcCCCCccCccccceEEEEec-CCCCCccccCcCCcCCCCCcccHHHHHHH---hcccccCCCccccc
Confidence 444433333344444333 6799999643 11222222110000 123577776544 342 11 1133
Q ss_pred EEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033114 82 IFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 117 (127)
Q Consensus 82 lFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~ 117 (127)
..+++.+.-++.++.|.+||+++.-.||||||+-.-
T Consensus 236 ~~viihGI~~pl~~pl~~l~~~l~y~DgFLhI~v~~ 271 (275)
T 4gdk_B 236 NQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIP 271 (275)
T ss_dssp EEEEBTTBCCCTTSBHHHHHHHSCCTTSCEEEEEEE
T ss_pred ceEEEeCCcCCCCCCHHHHHHhccCCCceEEEEEEe
Confidence 556677777999999999999999999999997653
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=94.68 E-value=0.028 Score=44.62 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=47.6
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEec---CCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCC
Q 033114 31 YPDRIPVIVEKAERSDIPNIDKKKYLVP---ADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE 107 (127)
Q Consensus 31 yP~~ipVIvE~~~~~~~p~L~k~KflVp---~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~ 107 (127)
-...|||.|-... + |.++. +|+ ...|++++.. ..+..- .....+++.+.-++.++.|.+||+++.-.
T Consensus 196 ~~r~IPiRIy~~~-~--~~iQ~---~i~~~~~~~TLg~~L~---~~lp~l-~~~~~~iihGi~vp~~~pl~~l~~~~~y~ 265 (274)
T 3vqi_A 196 KAKSLPVRVWTSN-Y--AVLQP---TVPVTDKELSVAELLD---SIKLSS-DGVKSVIIQGIDVSIEDNIFELYDIFASI 265 (274)
T ss_dssp GCSBCCEEEECTT-S--CEECC---CCBCC---CBHHHHHH---TTTCCC---CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred cccceeEEEEcCC-C--CeEec---ccCCCCccccHHHHHH---Hhcccc-ccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence 4588999986532 2 22211 233 3667776544 433211 12334667777789999999999999999
Q ss_pred CCeEEEE
Q 033114 108 DGFLYVT 114 (127)
Q Consensus 108 DGfLYi~ 114 (127)
||||||.
T Consensus 266 DgFLhiv 272 (274)
T 3vqi_A 266 DGFLYLV 272 (274)
T ss_dssp TSCEEEE
T ss_pred CceEEEE
Confidence 9999986
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=93.35 E-value=0.12 Score=34.22 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=38.0
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchH
Q 033114 52 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIM 97 (127)
Q Consensus 52 k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m 97 (127)
.-+|.|+.+.+|.+++..-|++-+++++.++.|...+.-..+++++
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp 66 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQV 66 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBG
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCCh
Confidence 4589999999999999999999999999999888877543333443
No 14
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=81.93 E-value=3.4 Score=25.24 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=41.8
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEe
Q 033114 53 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 115 (127)
Q Consensus 53 ~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Y 115 (127)
..+-|..+.||+++...+..+.++++++--++| ++.....+.+++++- -+ ++..|++..
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~~~--i~-~~~~i~l~~ 74 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVIEVYQ 74 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTEEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHHcC--CC-CCCEEEEEE
Confidence 356799999999999999999999988655555 554445677887741 11 233666654
No 15
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=81.52 E-value=4.3 Score=25.54 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=38.0
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 53 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 53 ~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
-.|.|..+.+++.++....++.++++++--|+| ++.-...+.|.+++
T Consensus 21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL 67 (79)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 468899999999999999999999988766766 44444556788776
No 16
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=80.35 E-value=6.2 Score=25.82 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=43.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEc---CC-CCCccchHHHHHhhhcCCCCeEEE
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NV-LPPTGAIMSAIYEEKKDEDGFLYV 113 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn---~~-lp~~~~~m~~lY~~~kd~DGfLYi 113 (127)
.-||.+++++++...|++||++.++....-|=. +. .+..|+.|.+.+++=+ +|-|-+
T Consensus 18 irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL 78 (83)
T 1oey_A 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTL 78 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEE
Confidence 358999999999999999999987665555554 22 3678888999988765 445544
No 17
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=79.56 E-value=9.6 Score=25.82 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=45.7
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
+++|-|.|.-.. + ..-.|.|..+.+++.++....++.++++.+--|+|-+..+ ..+.|..++
T Consensus 24 ~~~I~IkVk~~~-g-----~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L-~~~~Tp~dl 85 (110)
T 2k8h_A 24 TALVAVKVVNAD-G-----AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPI-DETKTPEEL 85 (110)
T ss_dssp CCCEEEEEEETT-S-----CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBC-CSSSHHHHH
T ss_pred CCeEEEEEECCC-C-----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 356666664332 1 2347899999999999999999999998876677644444 556888887
No 18
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.43 E-value=6.2 Score=24.39 Aligned_cols=75 Identities=9% Similarity=0.062 Sum_probs=49.4
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCe
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGF 110 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGf 110 (127)
|..+-|.|.... + +...+-|+.+.||+++...|..+.++++++--. +.++.....+.+|++. .- ++..
T Consensus 5 ~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL-~~~Gk~L~d~~tL~~~----~i~~g~~ 73 (87)
T 1wh3_A 5 SSGIQVFVKNPD-G-----GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQL-EFQGQVLQDWLGLGIY----GIQDSDT 73 (87)
T ss_dssp SSSEEEEEEETT-T-----EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEE-EETTEECCSSSBHHHH----TCCTTEE
T ss_pred CCCEEEEEEcCC-C-----CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEE-EECCEEccCCCCHHHC----CCCCCCE
Confidence 455666665432 1 122456899999999999999999998775444 4466555667788765 22 3346
Q ss_pred EEEEecC
Q 033114 111 LYVTYSG 117 (127)
Q Consensus 111 LYi~Ys~ 117 (127)
|++....
T Consensus 74 i~l~~~~ 80 (87)
T 1wh3_A 74 LILSKKK 80 (87)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 7776643
No 19
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.85 E-value=5.1 Score=24.97 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=40.7
Q ss_pred ecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033114 57 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 117 (127)
Q Consensus 57 Vp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~ 117 (127)
|+.+.||+++...|..+.++++++--. +.++.....+.+|++. .-+ ++..|++....
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~qrL-~~~gk~L~d~~tL~~~--~i~-~g~~i~l~~~~ 82 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQRL-FYRGKQLENGYTLFDY--DVG-LNDIIQLLVRP 82 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTEEE-EETTEECCSSSBHHHH--TCC-TTCEEEEEECC
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEEE-EECCeECCCCCCHHHC--CCC-CCCEEEEEEeC
Confidence 899999999999999999998775444 4466555667788765 111 34477777643
No 20
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=76.80 E-value=10 Score=24.95 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=52.1
Q ss_pred HHhhCCCcccEEEEccC--CCCCCCCccceEEecC-CCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhh
Q 033114 27 IREKYPDRIPVIVEKAE--RSDIPNIDKKKYLVPA-DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEE 103 (127)
Q Consensus 27 ir~kyP~~ipVIvE~~~--~~~~p~L~k~KflVp~-~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~ 103 (127)
...++|.-|.|.|.... .++ ...+-|+. +.||+++...|....++++++--. +.++.....+.+|++.
T Consensus 20 ~l~~~~~~i~i~Vk~~~~~~g~-----~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL-~~~Gk~L~D~~tL~~y--- 90 (111)
T 1we6_A 20 FLAQHPGPATIRVSKPNENDGQ-----FMEITVQSLSENVGSLKEKIAGEIQIPANKQKL-SGKAGFLKDNMSLAHY--- 90 (111)
T ss_dssp HHHHCCSCEEEEECCTTCSSSC-----CEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEE-ECSSSBCCTTSBTTTT---
T ss_pred HHHhCCCcEEEEEEecccCCCc-----EEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEE-EECCEECCCCCcHHHC---
Confidence 44678888888885431 221 23466897 999999999999999998765433 3466555556666543
Q ss_pred hcC-CCCeEEEEec
Q 033114 104 KKD-EDGFLYVTYS 116 (127)
Q Consensus 104 ~kd-~DGfLYi~Ys 116 (127)
.- ++..|+|...
T Consensus 91 -~I~~g~~l~l~~r 103 (111)
T 1we6_A 91 -NVGAGEILTLSLR 103 (111)
T ss_dssp -TCSSSCEEEEECS
T ss_pred -CCCCCCEEEEEEE
Confidence 22 3346776653
No 21
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=75.91 E-value=3.2 Score=25.39 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=42.0
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 117 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~ 117 (127)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++. .-+ ++..|++....
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~--~i~-~~~~l~l~~r~ 76 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NIQ-KWSTLFLLLRL 76 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG--TCC-TTCEEEEECCC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc--CCC-CCCEEEEEEEC
Confidence 4578999999999999999999987754 344566655667777663 112 34477776543
No 22
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=74.72 E-value=6 Score=24.90 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=42.5
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 117 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~ 117 (127)
.+-|+.+.||+++...|..+.++++++--.+| ++.....+.+|++.= -+ ++..|++....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGKPLEDQLPLGEYG--LK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEES-SSSCCCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE-CCEECCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence 45689999999999999999999887654444 555556677887752 22 34478877653
No 23
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.25 E-value=7.7 Score=26.00 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=42.6
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys 116 (127)
.+-|..+.||++|...|..+-++++++-..+ .++.....+.+|++ |.-. ++..|.+.|.
T Consensus 42 ~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi-~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~ 100 (100)
T 1uh6_A 42 RVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK-KWYTIFKDHVSLGD-YEIH--DGMNLELYYQ 100 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence 3568999999999999999999987764444 44555566778887 3322 3347888873
No 24
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=74.07 E-value=16 Score=24.12 Aligned_cols=85 Identities=8% Similarity=0.139 Sum_probs=54.9
Q ss_pred HHhhCCCcccEEEEccCCCCCC--CCccc--eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHh
Q 033114 27 IREKYPDRIPVIVEKAERSDIP--NIDKK--KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYE 102 (127)
Q Consensus 27 ir~kyP~~ipVIvE~~~~~~~p--~L~k~--KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~ 102 (127)
..+.+|..|.|.|.......-| .|..+ .+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~-~~Gk~L~D~~tL~~y-- 94 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ-YEGIFIKDSNSLAYY-- 94 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEE-ETTEEECTTSBHHHH--
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE-ECCEECCCCCCHHHC--
Confidence 5667899899888643211100 13333 3568999999999999999999987754433 455544567788764
Q ss_pred hhcC-CCCeEEEEec
Q 033114 103 EKKD-EDGFLYVTYS 116 (127)
Q Consensus 103 ~~kd-~DGfLYi~Ys 116 (127)
.- ++..|+|...
T Consensus 95 --~i~~g~~i~lv~r 107 (115)
T 1we7_A 95 --NMASGAVIHLALK 107 (115)
T ss_dssp --TCCSSCEEEEEEC
T ss_pred --CCCCCCEEEEEEE
Confidence 22 3346777654
No 25
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=73.46 E-value=3.8 Score=24.36 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=39.6
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys 116 (127)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHe-EEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 4568999999999999999999987654 444466544456666543 22 3446666543
No 26
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=73.20 E-value=3 Score=25.59 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=42.0
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 117 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~ 117 (127)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .-+ ++..|++....
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~q-rL~~~g~~L~d~~tL~~~--~i~-~~~~i~l~~rl 76 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NIH-NHSALYLLLKL 76 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETBEECCTTCBTTTT--TCC-TTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHE-EEEECCeECCCCCCHHHC--CCC-CCCEEEEEEec
Confidence 4568899999999999999999988754 444466555666677663 122 34477776653
No 27
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=73.12 E-value=4.3 Score=24.12 Aligned_cols=58 Identities=5% Similarity=-0.010 Sum_probs=39.9
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys 116 (127)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998765 4444566544556666543 33 3346666543
No 28
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=72.13 E-value=3.8 Score=28.63 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=40.0
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCC-ceEEEEEc--CC-----CCCccchHHHHHhhhcC
Q 033114 53 KKYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVD--NV-----LPPTGAIMSAIYEEKKD 106 (127)
Q Consensus 53 ~KflVp~~~tv~~~~~~lRk~L~l~~~-~slFlyVn--~~-----lp~~~~~m~~lY~~~kd 106 (127)
.-|.|.++.|+++|...|-+.++++++ ..|+..++ |. ++.++.+++..+....+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~ 119 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD 119 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence 358999999999999999999999865 66777776 32 23455667666666533
No 29
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.47 E-value=4.1 Score=24.72 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=33.3
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 99 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~ 99 (127)
.+-|+.+.||+++...|.++.+++++.--. +.++.....+.++++
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL-~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNVPVRQQRL-LFKGKALADGKRLSD 65 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHTCCCTTTCEE-EETTEECCTTSBGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EECCeECCCCCcHHH
Confidence 456899999999999999999998765433 345554455666655
No 30
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=70.73 E-value=6.7 Score=25.29 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=50.4
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCe
Q 033114 31 YPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGF 110 (127)
Q Consensus 31 yP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGf 110 (127)
-+..+-|.|.-.. + +...+-|..+.||+++...|..+.++++++--++| ++.....+.+++++- -+ ++..
T Consensus 18 ~~~~m~I~Vk~~~-g-----~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~ 87 (97)
T 1wyw_B 18 EGEYIKLKVIGQD-S-----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDV 87 (97)
T ss_dssp -CCEEEEEEECTT-C-----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCE
T ss_pred CCCcEEEEEEeCC-C-----CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCE
Confidence 3466777775432 2 12357799999999999999999999988655555 554445677888742 21 2336
Q ss_pred EEEEec
Q 033114 111 LYVTYS 116 (127)
Q Consensus 111 LYi~Ys 116 (127)
|++...
T Consensus 88 I~l~~~ 93 (97)
T 1wyw_B 88 IEVYQE 93 (97)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 776653
No 31
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=70.41 E-value=9.3 Score=25.42 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=50.2
Q ss_pred HHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhh
Q 033114 24 AARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEE 103 (127)
Q Consensus 24 ~~~ir~kyP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~ 103 (127)
+..+....|.+|-|.|.-.. + ++..+-|.++.||++|...|-.+.++++++-.-.| ++.....+.+|+ .
T Consensus 11 ~~~~~~~~~~mIqI~Vk~~~-G-----kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~----d 79 (93)
T 3plu_A 11 SSGLVPRGSHMIEVVVNDRL-G-----KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE----D 79 (93)
T ss_dssp ---------CEEEEEEECTT-S-----CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----G
T ss_pred cccccCCCCceEEEEEECCC-C-----CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----H
Confidence 44555667788888885431 2 23457799999999999999999999988765555 555566666774 4
Q ss_pred hcCCCC-eEEEEe
Q 033114 104 KKDEDG-FLYVTY 115 (127)
Q Consensus 104 ~kd~DG-fLYi~Y 115 (127)
|.=.|| -|.+-|
T Consensus 80 Y~I~dgstLhL~~ 92 (93)
T 3plu_A 80 YEVHDQTNLELYY 92 (93)
T ss_dssp GTCCTTCEEEEEE
T ss_pred cCCCCCCEEEEEe
Confidence 443333 555555
No 32
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=69.82 E-value=7.9 Score=25.22 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=49.2
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeE
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL 111 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfL 111 (127)
++.+-|.|.... + +..+-|+.+.||++|...|..+.++++++-- |+.++.....+.+|++. .-+ ++..|
T Consensus 20 ~~~m~I~Vk~~~-g------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y--gI~-~gstI 88 (100)
T 1yqb_A 20 PHLIKVTVKTPK-D------KEDFSVTDTCTIQQLKEEISQRFKAHPDQLV-LIFAGKILKDPDSLAQC--GVR-DGLTV 88 (100)
T ss_dssp TTEEEEEEECSS-C------EEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBHHHH--TCC-TTCEE
T ss_pred CCeEEEEEEcCC-C------cEEEEECCCCcHHHHHHHHHHHHCcChhhEE-EEECCEECCCcCcHHHC--CCC-CCCEE
Confidence 345666664432 1 2346789999999999999999999876543 44466555667788765 112 23467
Q ss_pred EEEecC
Q 033114 112 YVTYSG 117 (127)
Q Consensus 112 Yi~Ys~ 117 (127)
++....
T Consensus 89 ~l~~r~ 94 (100)
T 1yqb_A 89 HLVIKR 94 (100)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 776544
No 33
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=68.64 E-value=6 Score=24.75 Aligned_cols=75 Identities=17% Similarity=0.330 Sum_probs=48.8
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeE
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL 111 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfL 111 (127)
|..+-|.|.-.. ++ ...+-|..+.||++|...|..+.++++++--.+| ++.....+.+|++. .-++..|
T Consensus 3 ~~~m~i~Vk~~~-g~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~Gk~L~d~~tL~~~----~i~g~~i 71 (90)
T 4dwf_A 3 PDSLEVLVKTLD-SQ-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGRVLQDDKKLQEY----NVGGKVI 71 (90)
T ss_dssp CCEEEEEEEETT-CC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGGG----TCTTEEE
T ss_pred CcEEEEEEEcCC-CC-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCeECCCCCCHHHc----CCCCcEE
Confidence 455566664331 11 2245689999999999999999999877644444 66655667777763 2224467
Q ss_pred EEEecC
Q 033114 112 YVTYSG 117 (127)
Q Consensus 112 Yi~Ys~ 117 (127)
++....
T Consensus 72 ~l~~~~ 77 (90)
T 4dwf_A 72 HLVERA 77 (90)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 766653
No 34
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=67.93 E-value=5.9 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.5
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 86 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyV 86 (127)
-.||.+++++++..-|+.||+++ +.-+|.|-
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~yk 56 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTKL 56 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEec
Confidence 36999999999999999999995 33344443
No 35
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=67.86 E-value=5.4 Score=24.62 Aligned_cols=58 Identities=3% Similarity=-0.020 Sum_probs=40.3
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEe
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 115 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Y 115 (127)
.+-|+.+.||+++...|..+.+++++.--. +.++.....+.+|++. .-+ ++..|++..
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrL-~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~ 83 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQRL-IYSGKQMNDEKTAADY--KIL-GGSVLHLVL 83 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCE-EETTEECCTTSBGGGG--TCC-TTCEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHEEE-EECCeECCCCCcHHHc--CCC-CCCEEEEEE
Confidence 457999999999999999999998765433 3466555567777764 122 344666643
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=67.77 E-value=11 Score=24.05 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=46.3
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCe
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGF 110 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGf 110 (127)
+..+.|.|.. + +...+-|+.+.||+++...|..+.++++++--. +.++.....+.+|++. .- ++..
T Consensus 17 ~~~m~I~Vk~---g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk~L~D~~tL~~y----~I~~gst 83 (93)
T 2l7r_A 17 RGSMQLFVRA---Q-----ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVV-LLAGAPLEDEATLGQC----GVEALTT 83 (93)
T ss_dssp ---CEEEEES---S-----SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEE-EETTEECCTTSBHHHH----TCCSSCE
T ss_pred CCcEEEEEEC---C-----CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEE-EECCEECCCCCcHHHC----CCCCCCE
Confidence 3456677754 1 233567899999999999999999998775444 4455555667788765 22 3336
Q ss_pred EEEEe
Q 033114 111 LYVTY 115 (127)
Q Consensus 111 LYi~Y 115 (127)
|++..
T Consensus 84 I~lv~ 88 (93)
T 2l7r_A 84 LEVAG 88 (93)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66653
No 37
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.68 E-value=14 Score=23.92 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=42.1
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCC-eEEEEecC
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDG-FLYVTYSG 117 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DG-fLYi~Ys~ 117 (127)
.+-|+.+.||++|...|..+.++.+++ .-|+.++.....+.+|+++ .-.|| .|+|....
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC----GVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHHH----TCCTTEEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCEEEEEEcC
Confidence 467899999999999999999998765 4444566555667788765 22333 67776643
No 38
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=67.11 E-value=14 Score=24.49 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=44.7
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 31 YPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 31 yP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
-+++|-|.|.-.. ++ ..-.|.|.++.+++.++..-.++.+++++.--|+| ++.-..+++|..+|
T Consensus 22 ~~~~I~LkV~~~d-g~----~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 22 TSQQLQLRVQGKE-KH----QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp SCSEEEEEEEESS-SS----CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred CCCeEEEEEEcCC-CC----EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 3456666664321 11 13468999999999999999999999988655666 55444556777777
No 39
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=66.81 E-value=8.8 Score=24.17 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=39.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhhhcCCCCeEEEE
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKDEDGFLYVT 114 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~l-p~~~~~m~~lY~~~kd~DGfLYi~ 114 (127)
.+-|+.+.||+++...|..+.++++++-- |+.++.. ...+.+|++.= -+ ++..|++.
T Consensus 24 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~lL~D~~tL~~y~--I~-~gs~i~lv 81 (84)
T 2kk8_A 24 ELEVDYRDTLLVVKQKIERSQHIPVSKQT-LIVDGIVILREDLTVEQCQ--IV-PTSDIQLE 81 (84)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEECCCSSSBHHHHT--CC-TTSCEEEE
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEE-EEECCEEecCCcCCHHHcC--CC-CCCEEEEE
Confidence 34689999999999999999999876543 3445554 56777887641 11 33356654
No 40
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=66.24 E-value=7.8 Score=23.13 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=39.0
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEe
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 115 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Y 115 (127)
.+-|+.+.||+++...|..+.+++++.--. +.++.....+.++++. +- ++..|++.-
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL-~~~gk~L~d~~tL~~~----~i~~g~~i~l~~ 74 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVANQRL-IYSGKILKDDQTVESY----HIQDGHSVHLVK 74 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEE-EETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHHEEE-EECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence 456899999999999999999998765443 4455544556666543 22 333666654
No 41
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=66.07 E-value=8.3 Score=23.37 Aligned_cols=57 Identities=7% Similarity=0.009 Sum_probs=40.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEe
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 115 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Y 115 (127)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .= ++..|++..
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~----~i~~~~~l~l~~ 75 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEY----GLKPLSTVFMNL 75 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGG----TCCTTCEEEEEE
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEE
Confidence 4568999999999999999999988764 444466555566777663 22 344666654
No 42
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=65.20 E-value=6.1 Score=24.94 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=42.6
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 117 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~ 117 (127)
.+-|+.+.||++|...|..+.+++++. .-|+.++.....+.+|+++ .-+ ++..|++....
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L~d~~tL~~~--~i~-~~~~i~l~~r~ 74 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NIQ-KESTLHLVLRL 74 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG--TCC-TTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEECCCCCcHHHc--CCC-CCCEEEEEEEc
Confidence 456889999999999999999998775 4444566655667777763 112 34477777653
No 43
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=64.10 E-value=8.3 Score=23.93 Aligned_cols=62 Identities=21% Similarity=0.409 Sum_probs=42.6
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033114 31 YPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 99 (127)
Q Consensus 31 yP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~ 99 (127)
-|..+.|.|.... ++ ...+-|+.+.||+++...|..+.++++++--.+| ++.....+.++++
T Consensus 14 ~~~~m~i~Vk~~~-g~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 14 EPDSLEVLVKTLD-SQ-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGRVLQDDKKLQE 75 (88)
T ss_dssp -CCEEEEEEEETT-SC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGG
T ss_pred CCCeEEEEEEcCC-CC-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCEECCCCCcHHH
Confidence 4566777775432 11 2245689999999999999999999887654444 6665566777765
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=63.86 E-value=7.2 Score=24.92 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=41.4
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecC
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSG 117 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys~ 117 (127)
.+-|+.+.||+++...|..+.+++++.-- |+.++.....+.+|++. .- ++..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~qr-L~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLRL 73 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGEE-EEETTEECCTTSBTGGG----TCCTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEE-EEECCEECCCCCCHHHc----CCCCCCEEEEEEeC
Confidence 45688999999999999999999877543 44466544556676653 22 34577777654
No 45
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=63.06 E-value=7.5 Score=24.47 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=34.3
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 99 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~ 99 (127)
.+-|+.+.||+++...|.++.+++++.--. +.++.....+.++++
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-~~~Gk~L~D~~tL~~ 75 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSD 75 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEE-EETTEECCTTCBTGG
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhEEE-EECCeECCCcCcHHH
Confidence 456899999999999999999998765433 346655566677766
No 46
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=63.01 E-value=14 Score=23.75 Aligned_cols=74 Identities=12% Similarity=0.012 Sum_probs=47.8
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCcc-chHHHHHhhhcC-CCC
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSAIYEEKKD-EDG 109 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~-~~m~~lY~~~kd-~DG 109 (127)
+..+.|.|.... + ...+-|+.+.||+++...|..+.++++++-- |+.++.....+ .+|++. .- ++.
T Consensus 13 ~~~~~I~Vk~~~-~------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~~tL~~y----gI~~gs 80 (94)
T 2kan_A 13 VRKIHVTVKFPS-K------QFTVEVDRTETVSSLKDKIHIVENTPIKRMQ-LYYSGIELADDYRNLNEY----GITEFS 80 (94)
T ss_dssp SCCEEEEEECSS-C------EEEEEECTTCBHHHHHHHHHHHSSSCTTTEE-EEETTEEECCTTSBHHHH----TCCTTE
T ss_pred CCCEEEEEEcCC-c------EEEEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCEECCCCcccHHHC----CCCCCC
Confidence 455667775431 1 2345689999999999999999999876543 34455544555 777764 22 344
Q ss_pred eEEEEecC
Q 033114 110 FLYVTYSG 117 (127)
Q Consensus 110 fLYi~Ys~ 117 (127)
.|+|....
T Consensus 81 tl~lv~r~ 88 (94)
T 2kan_A 81 EIVVFLKS 88 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEEeC
Confidence 67776543
No 47
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=62.57 E-value=13 Score=23.50 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=46.1
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCC-eE
Q 033114 33 DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDG-FL 111 (127)
Q Consensus 33 ~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DG-fL 111 (127)
..+-|.|... + +...+-|+.+.||+++...|..+.+++++.--.+| ++.....+.+|++. .-.|| .|
T Consensus 16 ~~m~i~Vk~~--g-----~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~~~----gi~~g~~i 83 (96)
T 1wx8_A 16 RIIRVSVKTP--Q-----DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF-TGKILRDQDILSQR----GILDGSTV 83 (96)
T ss_dssp CEEEEEEECS--S-----SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE-TTEECCTTSCHHHH----TCCTTEEE
T ss_pred CcEEEEEEEC--C-----eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCEECCCcCCHHHC----CCCCCCEE
Confidence 4456666443 1 12346689999999999999999999876544444 55545667788763 33344 55
Q ss_pred EEEe
Q 033114 112 YVTY 115 (127)
Q Consensus 112 Yi~Y 115 (127)
+|..
T Consensus 84 ~l~~ 87 (96)
T 1wx8_A 84 HVVV 87 (96)
T ss_dssp ECCB
T ss_pred EEEE
Confidence 5544
No 48
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=61.97 E-value=7.4 Score=24.53 Aligned_cols=59 Identities=5% Similarity=0.004 Sum_probs=41.1
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys 116 (127)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .-+ ++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~--~i~-~g~~l~l~~r 72 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDEKTAADY--KIL-GGSVLHLVLA 72 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBTTTT--TCC-TTCEEEEECB
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEEEE-ECCeECCCCCcHHHc--CCC-CCCEEEEEEE
Confidence 3568899999999999999999987754433 466555667777763 111 3446777654
No 49
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=61.50 E-value=14 Score=22.55 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=36.1
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033114 52 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 99 (127)
Q Consensus 52 k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~ 99 (127)
.-.|.|.++.+++.++....++.+++++.--|+|=+..+ ..+.|.++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~ 59 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQ 59 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHH
Confidence 346889999999999999999999999877777755554 33344444
No 50
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=61.39 E-value=7.7 Score=23.40 Aligned_cols=56 Identities=5% Similarity=-0.050 Sum_probs=37.7
Q ss_pred EE-ecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEe
Q 033114 55 YL-VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 115 (127)
Q Consensus 55 fl-Vp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Y 115 (127)
+- |+.+.||+++...|..+.++++++--.+ .++.....+.++++. .- ++..|++..
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~-~~g~~L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQRLF-YRGKQMEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhEEEE-ECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence 44 8899999999999999999987754444 455544556666542 22 233566654
No 51
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=61.38 E-value=30 Score=23.27 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=42.4
Q ss_pred cccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033114 34 RIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 99 (127)
Q Consensus 34 ~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~ 99 (127)
++-|.||-...+. ..-.+-|..+.||+++..-|-.+.++++..-= ++.+..+...+.+|++
T Consensus 24 ~l~v~v~d~~s~~----~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 24 RLWVSVEDAQMHT----VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEEEEESSSCC----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEEEEccCCCC----ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 3446665543222 23456789999999999999999999987554 4446666666777764
No 52
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=60.12 E-value=8.4 Score=24.76 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=46.0
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCC-CCe
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-DGF 110 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~-DGf 110 (127)
+..+-|.|.... ++ ...+-|+.+.||++|...|..+.++++++--. +.++.....+.+|+++ .=. +..
T Consensus 20 ~~~m~I~Vk~~~-g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk~L~D~~tL~~~----~i~~g~~ 88 (98)
T 4hcn_B 20 GRPMQIFVKTLT-GK-----TITLEVESSDTIDNVKSKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSDY----NIQKEST 88 (98)
T ss_dssp --CCEEEEEETT-CC-----EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEE-EETTEECCTTCBSGGG----TCCTTEE
T ss_pred CCeEEEEEEeCC-CC-----EEEEEECCCCcHHHHHHHHHHHhCCChhHEEE-EECCEECCCCCcHHHC----CCCCCCE
Confidence 355667775432 21 23456899999999999999999998775433 3466555666677653 223 335
Q ss_pred EEEEe
Q 033114 111 LYVTY 115 (127)
Q Consensus 111 LYi~Y 115 (127)
|++..
T Consensus 89 i~l~~ 93 (98)
T 4hcn_B 89 LHLVL 93 (98)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66543
No 53
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=58.63 E-value=20 Score=23.13 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=36.8
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 52 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 52 k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
.-.|.|.++.+++.++....++.++++++--|+|=+..+ ..+.|.+++
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 64 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 64 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 347899999999999999999999998776677654444 344555554
No 54
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=58.32 E-value=8.6 Score=24.18 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=37.3
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCC-eEEEEe
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDG-FLYVTY 115 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DG-fLYi~Y 115 (127)
+-|+.+.||+++...|....+++++.-- |+.++.....+.+|+++ +-.|| .|+|..
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~Gk~L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQK-LIFKGKVLVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTCE-EEETTEECCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCeECCCcCCHHHC----CCCCCCEEEEEE
Confidence 4588999999999999999999876433 33455544556666543 32333 566543
No 55
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=58.24 E-value=9.7 Score=23.93 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=38.4
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCC-CCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-DGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~-DGfLYi~Ys 116 (127)
.+-|+.+.||+++...|..+.+++++.-- |+.++.....+.++++. .-. +..|++...
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~r 81 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 81 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBSGGG----TCCTTCEEEEEC-
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhhEE-EEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 35688999999999999999999876543 34455544556666543 333 336666543
No 56
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=57.55 E-value=25 Score=27.07 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=32.3
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033114 51 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 118 (127)
Q Consensus 51 ~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~ 118 (127)
+.+-|.=..+++..+|...+++.=.+ |+. +.|+ +++..+.|.+-|..|+|+.|+.
T Consensus 32 ~~~~y~D~~di~~~efy~~~~~~~~~-p~T--------Sqps----~~~~~~~f~~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 32 DNEEFCDDGQLDIHRMLDILEKHKGR-SYT--------ACPG----IDAWLEAFGDDDEIFVVTITAG 86 (278)
T ss_dssp SSCEEECSTTCCHHHHHHHHHTCCSC-CEE--------ECCC----HHHHHHHHTTCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCC-cee--------cCCC----HHHHHHHHhcCCcEEEEECCCc
Confidence 33445545678889999888753111 111 1233 4445555545578999998874
No 57
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.23 E-value=17 Score=24.25 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=35.5
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHH
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 99 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~ 99 (127)
..-|+.+.||++|...|..+.++++.+--.+ .+......+.+|++
T Consensus 33 ~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 33 LLETRLHITGRELRSKIAETFGLQENYIKIV-INKKQLQLGKTLEE 77 (100)
T ss_dssp EEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ETTEECCTTSBHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-eCCeECCCCCcHHH
Confidence 4458899999999999999999987764444 56666677788876
No 58
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=56.75 E-value=18 Score=22.72 Aligned_cols=76 Identities=9% Similarity=0.156 Sum_probs=46.1
Q ss_pred CcccEEEEccCCCCCCCCccceEE--ecCCCchHHHHHHHHHhh--CCCCCceEEEEEcCCCCCccchHHHHHhhhcCCC
Q 033114 33 DRIPVIVEKAERSDIPNIDKKKYL--VPADLTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDED 108 (127)
Q Consensus 33 ~~ipVIvE~~~~~~~p~L~k~Kfl--Vp~~~tv~~~~~~lRk~L--~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~D 108 (127)
..+.|.|.... .. ...+- |+.+.||++|...|.... ++++++--.+ .++.....+.+|++....-+ ++
T Consensus 6 ~~m~i~Vk~~~-~~-----~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi-~~Gk~L~D~~tL~~~~~~i~-~~ 77 (93)
T 1wgd_A 6 SGVTLLVKSPN-QR-----HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI-YSGKLLLDHQCLRDLLPKQE-KR 77 (93)
T ss_dssp CCCEEEEECSS-SS-----CCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE-ETTEECCSSSCHHHHSCSSS-CS
T ss_pred cEEEEEEEeCC-CC-----eEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE-ECCEECcCcCCHHHHhcCCC-CC
Confidence 44667775432 11 11344 459999999999999998 8876654333 45555566778887542222 33
Q ss_pred CeEEEEec
Q 033114 109 GFLYVTYS 116 (127)
Q Consensus 109 GfLYi~Ys 116 (127)
-.|+|...
T Consensus 78 ~~i~lv~~ 85 (93)
T 1wgd_A 78 HVLHLVCN 85 (93)
T ss_dssp EEEEEECC
T ss_pred CEEEEEeC
Confidence 35666543
No 59
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=56.69 E-value=26 Score=22.75 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=42.1
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCC
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 118 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys~~ 118 (127)
.+-|+.+.||+++...|..+.++.++.--.+| ++.....+.+|++. +- ++..|+|.....
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~y----gI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF-SGRPLTDKMKFEEL----KIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE-TTEECCTTSHHHHC----CCSSSCEEEEECCCS
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE-CCEECCCCCcHHHc----CCCCCCEEEEEEeCC
Confidence 45699999999999999999999876544444 55555566777653 32 344777776543
No 60
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=56.56 E-value=26 Score=22.33 Aligned_cols=43 Identities=7% Similarity=0.047 Sum_probs=31.8
Q ss_pred ecCCCchHHHHHHH-HHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 57 VPADLTVGQFVYVI-RKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 57 Vp~~~tv~~~~~~l-Rk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
++.+.||++|...| ..+-++++++--.+ .++.....+.+|++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEIKLL-LKGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTEEEE-ETTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHEEEE-ECCEECcCcCCHHHc
Confidence 34899999999999 77778887764444 456666777888854
No 61
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.33 E-value=33 Score=22.27 Aligned_cols=54 Identities=6% Similarity=-0.035 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHHhh--CCCCCc-eEEEEEcCCCCCccchHHHHHhhhcCCC-CeEEEEecCC
Q 033114 60 DLTVGQFVYVIRKRI--KLSAEK-AIFIFVDNVLPPTGAIMSAIYEEKKDED-GFLYVTYSGE 118 (127)
Q Consensus 60 ~~tv~~~~~~lRk~L--~l~~~~-slFlyVn~~lp~~~~~m~~lY~~~kd~D-GfLYi~Ys~~ 118 (127)
+.||++|...|..+. ++++++ --.+ .++.....+.+|++. .-.| -.|+|.-...
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi-~~Gk~L~D~~tL~~y----~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLI-YCGRKLKDDQTLDFY----GIQPGSTVHVLRKSW 101 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEE-ETTEECCTTCBHHHH----TCCTTCEEEEEESSC
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEE-ECCeECCCCCcHHHc----CCCCCCEEEEEeCCC
Confidence 599999999999999 888776 3334 455444667788764 2223 3566655443
No 62
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=55.17 E-value=7.4 Score=25.45 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=39.5
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
.-.|-|.|.. .+... .+-|+.+.||++|...|..+.+++++.--.+| ++.....+.+|++.
T Consensus 26 ~m~i~I~Vk~-~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQRLIY-SGKILKDDQTVESY 86 (101)
T ss_dssp ---CCEEEEC-SSCCC------CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE-TTEECCTTSBTTTT
T ss_pred CcEEEEEEEE-CCEEE------EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE-CCEECCCcCcHHHC
Confidence 3456677764 22222 34578999999999999999999876543333 65555566677653
No 63
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=53.92 E-value=16 Score=24.03 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=39.3
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEe
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 115 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Y 115 (127)
.+-|+.+.||+++...|..+.+++++.--. +.++.....+.+|++. .- ++..|++..
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk~L~D~~tL~~~----gI~~gs~I~l~~ 106 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSDY----NIQKESTLHLVL 106 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTEEE-EETTEECCSSCBTTTT----TCCTTCEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccEEE-EECCEECCCCCcHHHc----CCCCCCEEEEEE
Confidence 456899999999999999999998775444 4455544556666553 22 334666654
No 64
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=53.48 E-value=26 Score=22.04 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=39.7
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCceEEEE--EcCCCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033114 56 LVPADLTVGQFVYVIRKRIKLSAEKAIFIF--VDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 118 (127)
Q Consensus 56 lVp~~~tv~~~~~~lRk~L~l~~~~slFly--Vn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~ 118 (127)
-|+.+.||++|...|..+.+++++.--.+. .++.....+.+|+++ .-+ ++..|+|--+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~--~i~-~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL--KLK-PNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH--TCC-TTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc--CCC-CCCEEEEEecCc
Confidence 468899999999999999999876543330 455555566778773 112 233676655443
No 65
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.29 E-value=13 Score=24.03 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=37.9
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCcc-chHHHHHhhhcCCCCeEEEEec
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSAIYEEKKDEDGFLYVTYS 116 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~-~~m~~lY~~~kd~DGfLYi~Ys 116 (127)
+-|+.+.||++|...|..+.++++++--.+ .++.....+ .+|++. .-+ ++..|+|.-.
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~gk~L~D~~~tL~~y--gI~-~g~~l~l~~~ 84 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQIV-YMEQLLTDDHCSLGSY--GLK-DGDMVVLLQK 84 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBCEE-ETTEEECCSSSBHHHH--TCC-TTEEEEECBC
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeEEE-ECCEECCCCcccHHHC--CCC-CCCEEEEEEC
Confidence 458999999999999999999987654333 455443444 567664 122 2336666543
No 66
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=53.10 E-value=12 Score=24.69 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=39.6
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEe
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 115 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Y 115 (127)
.+-|+.+.||++|...|..+.+++++.-- |+.++.....+.+|+++ .= ++..|++..
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~~----gI~~gs~I~l~~ 106 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVL 106 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTTTT----TCCTTCEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHEE-EEECCEECCCCCcHHHC----CCCCCCEEEEEE
Confidence 45689999999999999999999876543 34466555566676653 22 334666654
No 67
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=52.57 E-value=18 Score=23.48 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=42.3
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
+++|-|.|.-.. + +.-.|.|.++.+++.++..+.++.++++++--|+|-+..+ ..+.|.+++
T Consensus 5 ~~~i~ikVk~~~-g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 66 (94)
T 2io1_B 5 NDHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 66 (94)
T ss_dssp -CEEEEEEECTT-S-----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEECCC-C-----CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 355556664321 1 2346889999999999999999999998876677655554 334555544
No 68
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=52.12 E-value=13 Score=24.11 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=48.6
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCC-CCe
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-DGF 110 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~-DGf 110 (127)
+..+-|.|... ++ ...+-|+.+.||+++...|..+.+++++.--. +.++.....+.+|++. +-. +..
T Consensus 23 ~~~m~I~Vk~~--g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk~L~D~~tL~~~----gI~~g~~ 90 (101)
T 2klc_A 23 PKIMKVTVKTP--KE-----KEEFAVPENSSVQQFKEEISKRFKSHTDQLVL-IFAGKILKDQDTLSQH----GIHDGLT 90 (101)
T ss_dssp CCCEEEEEECS--SC-----EEEEEECSCCCHHHHHHHHHHHHTCCGGGEEE-EETTEEECTTCCTGGG----TCCTTCE
T ss_pred CCeEEEEEEeC--Cc-----EEEEEECCCCCHHHHHHHHHHHHCcChhhEEE-EECCEECCCcCcHHHc----CCCCCCE
Confidence 56788888554 21 23567999999999999999999998765433 4455544556666553 333 346
Q ss_pred EEEEec
Q 033114 111 LYVTYS 116 (127)
Q Consensus 111 LYi~Ys 116 (127)
|+|...
T Consensus 91 I~l~~~ 96 (101)
T 2klc_A 91 VHLVIK 96 (101)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 666554
No 69
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=51.84 E-value=47 Score=21.68 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=43.9
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCCceEEE-EEcC--C--CCCccchHH---HHHhhhcCCCCeEEE
Q 033114 53 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDN--V--LPPTGAIMS---AIYEEKKDEDGFLYV 113 (127)
Q Consensus 53 ~KflVp~~~tv~~~~~~lRk~L~l~~~~slFl-yVn~--~--lp~~~~~m~---~lY~~~kd~DGfLYi 113 (127)
..+.||.+.++.++..-||.++++.+.+.+-+ |++. - .-+.|+.|. ++|+-.+|..=.|||
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 36779999999999999999999988887766 4442 1 247777765 466666654434444
No 70
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=51.13 E-value=15 Score=22.22 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=18.4
Q ss_pred HHHHHhhCCCCCceEEEEEcC
Q 033114 68 YVIRKRIKLSAEKAIFIFVDN 88 (127)
Q Consensus 68 ~~lRk~L~l~~~~slFlyVn~ 88 (127)
.-+|++|++.+++.|.+++.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 558999999999999998864
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=51.06 E-value=36 Score=22.68 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=39.8
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys 116 (127)
.+-|+.+.||+++...|..+.+++++.--++ .++.....+.++++. .- ++..|++...
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~g~~L~d~~tL~~~----~i~~~~~i~l~~r 148 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKESTLHLVLR 148 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-ECCEECCCCCCHHHc----CCCCCCEEEEEEe
Confidence 4568899999999999999999987754444 455444456666553 22 3446777653
No 72
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=49.97 E-value=11 Score=23.73 Aligned_cols=51 Identities=8% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHhhCCCCCceEEEEEcC-C--C-CCcc---chHHHHHhhhcCCCCeEEEEecCCcccCCC
Q 033114 68 YVIRKRIKLSAEKAIFIFVDN-V--L-PPTG---AIMSAIYEEKKDEDGFLYVTYSGENTFGSH 124 (127)
Q Consensus 68 ~~lRk~L~l~~~~slFlyVn~-~--l-p~~~---~~m~~lY~~~kd~DGfLYi~Ys~~~~fG~~ 124 (127)
.-+|++|++.+++.+.+.+.+ . + |... .++.++++.+.+ | + +..+..||..
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~-~-~----~~~e~~wg~~ 76 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITP-E-N----LHENIDWGEP 76 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC-----------------------------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhccc-c-c----cccccccCCC
Confidence 457899999999999998864 3 2 5443 478899988853 3 3 2345667753
No 73
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=49.56 E-value=19 Score=24.71 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=41.4
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEE-EEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFl-yVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys 116 (127)
.+-|+.+.||+++...|....++++++--.+ |-++.....+.+|++. +- ++..|++...
T Consensus 16 ~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y----~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 16 QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ----GLGPGSTVLLVVD 76 (159)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc----CCCCCCEEEEEcc
Confidence 3468899999999999999999998655444 5255544667777653 22 3446776665
No 74
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=49.43 E-value=9.8 Score=24.97 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=41.5
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCc
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGEN 119 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~~ 119 (127)
+-|+.+.||++|...|..+.++++++--.+ .++.....+.+|+++ .-+ ++..|++......
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~--~i~-~g~~i~lv~~~~~ 76 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQIKLI-YSGKVLQDSKTVSEC--GLK-DGDQVVFMVSQKK 76 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGGCEEE-ETTEECCTTSBTTTT--TCC-TTCEEEEECCC--
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhEEEE-ECCEECCCcCCHHHc--CCC-CCCEEEEEEcCCC
Confidence 458899999999999999999987654333 456555667777764 222 3447877765443
No 75
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=48.94 E-value=52 Score=25.49 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=39.3
Q ss_pred CccceE-EecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCC
Q 033114 50 IDKKKY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 118 (127)
Q Consensus 50 L~k~Kf-lVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys~~ 118 (127)
++.+-| .=..+++..+|...++..-+-.|+. +.|++. .+-++|++..+ -|..|+|+.|+.
T Consensus 34 ~~~~~y~~D~~di~~~efy~~~~~~~~~~p~T--------Sqps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 34 FDGETYYRDGVDITRDECYQRMVDDPKLFPKT--------SLPSVE-SYADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp SSSSCEEEBTTTBCHHHHHHHHHHCTTCCCEE--------ECCCHH-HHHHHHHHHHTTTCCEEEEESCTT
T ss_pred ECCEEEecCCCCCCHHHHHHHHHhCCCCCcee--------cCCCHH-HHHHHHHHHHHCCCeEEEEECCCc
Confidence 355566 5556899999999997641112222 134443 67788888754 377999998874
No 76
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.29 E-value=26 Score=21.86 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=44.3
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCC-----CchHHHHHHHHHhhCCCCCceEEEEEcCC-CCCccchHHHHHhhhcC
Q 033114 33 DRIPVIVEKAERSDIPNIDKKKYLVPAD-----LTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKD 106 (127)
Q Consensus 33 ~~ipVIvE~~~~~~~p~L~k~KflVp~~-----~tv~~~~~~lRk~L~l~~~~slFlyVn~~-lp~~~~~m~~lY~~~kd 106 (127)
..+.|.|... +. ...+-|+.+ .||++|...|..+.+++++.--.+| ++. +...+.+|+++ .=
T Consensus 6 ~~~~v~Vk~~--~~-----~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~-~Gk~L~D~~~~L~~~----~i 73 (92)
T 1wxv_A 6 SGLTVTVTHS--NE-----KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF-KGKSLKEMETPLSAL----GI 73 (92)
T ss_dssp SSEEEEEECS--SS-----EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE-TTEEECCSSSBHHHH----TC
T ss_pred CeEEEEEEEC--CE-----EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE-CCeecCCCcccHHHC----CC
Confidence 4466666442 11 223457774 9999999999999999876543333 554 43335578764 22
Q ss_pred CCC-eEEEEecCC
Q 033114 107 EDG-FLYVTYSGE 118 (127)
Q Consensus 107 ~DG-fLYi~Ys~~ 118 (127)
.|| .|+|.-+..
T Consensus 74 ~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 74 QDGCRVMLIGKKN 86 (92)
T ss_dssp CSSEEEEEESCCS
T ss_pred CCCCEEEEEecCC
Confidence 233 566654443
No 77
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=47.77 E-value=25 Score=22.58 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=42.4
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
+++|-|.|.-.. + ..-.|.|..+.+++.++.....+.+++++.--|+|=+..+ ..+.|..++
T Consensus 15 ~~~i~ikV~~~~-g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 76 (93)
T ss_dssp CCEEEEEEECTT-S-----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEECCC-C-----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc-CCCCCHHHc
Confidence 456666664321 1 2346899999999999999999999998865666655444 334455443
No 78
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.70 E-value=19 Score=24.43 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=40.1
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCC-eEEEEecC
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDG-FLYVTYSG 117 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DG-fLYi~Ys~ 117 (127)
.+-|+.+.||++|...|..+.++++++--. +.++.....+.+|++ |.-.|| .|+|....
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrL-i~~Gk~L~D~~tL~d----ygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQLVL-IFAGKILKDQDTLIQ----HGIHDGLTVHLVIKR 104 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSEEE-EETTEEESTTSCGGG----TTCSSSEEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceEEE-EECCEEcCCCCCHHH----cCCCCCCEEEEEecc
Confidence 456899999999999999999998765444 445554455666655 333344 66666543
No 79
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=47.10 E-value=45 Score=20.06 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=46.8
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHh---hCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-C
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKR---IKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-E 107 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~---L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~ 107 (127)
|..+-|.|....+. ...+-|+.+.||+++...|..+ -++++++- -|+.++.....+.+|++ |+- +
T Consensus 3 ~~~m~i~vk~~~g~------~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~q-rLi~~Gk~L~D~~tL~~----~~i~~ 71 (85)
T 2wyq_A 3 PMAVTITLKTLQQQ------TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQ-KLIYAGKILSDDVPIRD----YRIDE 71 (85)
T ss_dssp -CCEEEEEEETTSC------EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGE-EEEETTEECCTTSBGGG----GCCCT
T ss_pred CceEEEEEEECCCC------EEEEEECCCCCHHHHHHHHHhhccccCCCHHHe-EEEECCEECcCCCCHHH----cCCCC
Confidence 55666777554221 2245689999999999999998 45766543 34446655556667765 333 3
Q ss_pred CCeEEEEecCC
Q 033114 108 DGFLYVTYSGE 118 (127)
Q Consensus 108 DGfLYi~Ys~~ 118 (127)
+..|++..+..
T Consensus 72 g~~i~l~~~~~ 82 (85)
T 2wyq_A 72 KNFVVVMVTKT 82 (85)
T ss_dssp TSEEEEEEC--
T ss_pred CCEEEEEEcCC
Confidence 44787776544
No 80
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.94 E-value=18 Score=24.63 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCC-CCCccchHHHHHhhhcC
Q 033114 77 SAEKAIFIFVDNV-LPPTGAIMSAIYEEKKD 106 (127)
Q Consensus 77 ~~~~slFlyVn~~-lp~~~~~m~~lY~~~kd 106 (127)
.|+..|+|||+|- .+-....|.++|..|..
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~ 51 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGK 51 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCC
Confidence 4678899999983 35666678999998875
No 81
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=46.94 E-value=13 Score=24.76 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=40.5
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCC
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 118 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys~~ 118 (127)
+-|+.+.||+++...|..+.+++++.-- |+.++.....+.+|++. .- ++..|+|.....
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~y----gI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIWAGKQLEDGRTLSDY----NIQRESTLHLVLRLR 83 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTTTT----TCCSSCEEEEEECCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCEECCCCCcHHHC----CCCCCCEEEEEEEcC
Confidence 4588999999999999999999877543 34455544556666543 22 344677776543
No 82
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=46.76 E-value=20 Score=20.74 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHHHHhhCCCCCceEEEEEcC
Q 033114 68 YVIRKRIKLSAEKAIFIFVDN 88 (127)
Q Consensus 68 ~~lRk~L~l~~~~slFlyVn~ 88 (127)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 568999999999999998864
No 83
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=52.26 E-value=4.2 Score=24.48 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=31.4
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
+-|+.+.||+++...|..+.+++++.--.+| ++.....+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIF-AGKELPNHLTVQNC 59 (76)
Confidence 4578899999999999999888876544444 44444455566553
No 84
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.69 E-value=15 Score=23.59 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=31.8
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
.+-|+.+.||++|...|..+.+++++.--.+| +.... .|.+|+++
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~-~Gk~L-dd~tL~~~ 74 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVP-EDKTLREI 74 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS-SSBCC-SSSBHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CCeeC-CcCcHHHC
Confidence 35689999999999999999999876433333 44333 45566653
No 85
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=44.55 E-value=16 Score=24.49 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=39.2
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys 116 (127)
.+-|+.+.||+++...|..+.+++++.--.+| ++.....+.++++. +- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~-~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 72 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSDY----NIQKESTLHLVLR 72 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEEE-CCeECcCcccHHHh----ccCCCCeeEEEee
Confidence 45688999999999999999999877544444 55444556666543 22 3346666554
No 86
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.54 E-value=34 Score=22.53 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=41.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEc-CCCCCccchHHHHHhhhcCCCCeEEEEecCCc
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGEN 119 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn-~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~~ 119 (127)
+-|+.+.||++|...|..+-++++.+.-.++.. .. ...+.+|+++ .-+ ..-.|+|......
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~--~I~-~gstL~lvl~~~~ 84 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL--HLP-KNNSLYVLTPDLP 84 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH--CCC-SEEEEEECCSSSC
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc--CCC-CCCEEEEEecCCC
Confidence 458899999999999999999988754444322 34 4556678776 122 2346777665544
No 87
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=43.61 E-value=63 Score=20.77 Aligned_cols=64 Identities=19% Similarity=0.108 Sum_probs=41.1
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc-CC----CCCccchHHH
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NV----LPPTGAIMSA 99 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn-~~----lp~~~~~m~~ 99 (127)
++.|.|.|.-.. ++. .....-|+.+.||+++...|..+.++++++---+|.+ +. +-..+.+|++
T Consensus 13 ~~~v~l~It~s~-~~~---~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 13 SDFIKVNVSNSH-NDA---VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCEEEEEEEESS-CSC---EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECC-CCc---eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 466777775421 110 1234569999999999999999999987654334443 22 3355566765
No 88
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=43.20 E-value=39 Score=23.17 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=45.9
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC------CCCeEEEEecCCcccC
Q 033114 56 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD------EDGFLYVTYSGENTFG 122 (127)
Q Consensus 56 lVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd------~DGfLYi~Ys~~~~fG 122 (127)
-|..+.||+++...|..+.++++.+--.+ .++.....+.+|++ |.-. + .+--|++......+|-
T Consensus 17 ev~~sdTV~~lK~kI~~~egIP~~qQrLi-~~Gk~LeD~~TLsd-y~I~-~~~a~~q~~stL~L~lr~~g~fe 86 (118)
T 2fnj_B 17 DAKESSTVFELKRIVEGILKRPPEEQRLY-KDDQLLDDGKTLGE-CGFT-SQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBHHH-HTCC-TTTSBTTBCEEEEEEEBSSSCBC
T ss_pred EeCCcChHHHHHHHHHHHhCCCHHHeEEE-ECCeECCCCCCHHH-cCcc-cccccCCCCCEEEEEecCCCcee
Confidence 48899999999999999999987754333 46666677888987 3322 1 2446888887555553
No 89
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=43.06 E-value=41 Score=23.45 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=32.6
Q ss_pred CCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc
Q 033114 47 IPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 87 (127)
Q Consensus 47 ~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn 87 (127)
+|+..-....|..+.+|++++..|-+++++...+- |-+|.
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 56666778899999999999999999999986544 55553
No 90
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.04 E-value=25 Score=21.76 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=18.8
Q ss_pred EEEcCCCCCccchHHHHHhhhcC--------CCCeEEEEecCC
Q 033114 84 IFVDNVLPPTGAIMSAIYEEKKD--------EDGFLYVTYSGE 118 (127)
Q Consensus 84 lyVn~~lp~~~~~m~~lY~~~kd--------~DGfLYi~Ys~~ 118 (127)
|||.| +.-..+.|.+++..|.. ..||-+|.|.+.
T Consensus 18 l~V~n-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 18 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 59 (97)
T ss_dssp EEEEC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSH
T ss_pred EEEcC-CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCH
Confidence 44555 43444456666666642 356777777554
No 91
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=42.93 E-value=51 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=25.9
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCc
Q 033114 52 KKKYLVPADLTVGQFVYVIRKRIKLSAEK 80 (127)
Q Consensus 52 k~KflVp~~~tv~~~~~~lRk~L~l~~~~ 80 (127)
...+.||.+.|+.+|-.+|+.-.+.....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 57789999999999999999999987654
No 92
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=42.12 E-value=81 Score=21.62 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=56.7
Q ss_pred ccEEEEccCCCCCC-CCccceEE-ecCCCchHHHHHHHHHhhCCCC----------------CceEEEEEc---CC--CC
Q 033114 35 IPVIVEKAERSDIP-NIDKKKYL-VPADLTVGQFVYVIRKRIKLSA----------------EKAIFIFVD---NV--LP 91 (127)
Q Consensus 35 ipVIvE~~~~~~~p-~L~k~Kfl-Vp~~~tv~~~~~~lRk~L~l~~----------------~~slFlyVn---~~--lp 91 (127)
|-++..++|.--.. .....+|+ -+.+.||.++...|.-||.|+. ....-+||- +. ..
T Consensus 4 iELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L 83 (111)
T 3gs2_A 4 IELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVL 83 (111)
T ss_dssp EEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEEC
T ss_pred eEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEEc
Confidence 45666676643111 22345664 7899999999999998887661 123344443 23 37
Q ss_pred CccchHHHHHhhhcCCCCeEEEEecC
Q 033114 92 PTGAIMSAIYEEKKDEDGFLYVTYSG 117 (127)
Q Consensus 92 ~~~~~m~~lY~~~kd~DGfLYi~Ys~ 117 (127)
+.+++|.++-++|=-.+-=|-|-||-
T Consensus 84 ~gs~tLe~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 84 DGSFSLELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CTTSBHHHHHHHHTCSSSCEEEEEEE
T ss_pred cCcccHHHHhhhhccCCCCeeEEecc
Confidence 89999999999995577888888874
No 93
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=42.11 E-value=52 Score=25.34 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=36.9
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCC
Q 033114 51 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 118 (127)
Q Consensus 51 ~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys~~ 118 (127)
+..-|.=..+++..+|...++.. ++ |+.| .|++. .+-++|++..+ .|..|+|+.|+.
T Consensus 35 ~~~~y~D~~di~~~efy~~~~~~-~~-p~TS--------qps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 92 (289)
T 1pzx_A 35 NGQDYKDGITIEPKQVYDAMRQG-HT-VKTA--------QPSPL-AMKELFLPYAKENRPCLYIAFSSK 92 (289)
T ss_dssp TTEEEEBTTTBCHHHHHHHHTTT-CC-CEEE--------CCCHH-HHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhC-CC-CeeC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 44456555678999999888754 22 3322 35443 47778877733 367999998874
No 94
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=41.61 E-value=17 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEecCCCchHHHHHHHHHhhCCC
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLS 77 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~ 77 (127)
..||.+.++.+|..-|++||++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46999999999999999999864
No 95
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.05 E-value=35 Score=22.57 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=43.2
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
+++|-|.|.-.. + ....|.|..+.++..++....++.++++..--|+|=+..+ ..+.|..++
T Consensus 22 ~~~I~IkVk~~~-g-----~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 22 NDHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp SCCEEEEEECSS-S-----CEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTT
T ss_pred CCeEEEEEECCC-C-----CEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 356666664321 1 2346899999999999999999999998876677755555 344555544
No 96
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=40.89 E-value=13 Score=25.09 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.5
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCC
Q 033114 53 KKYLVPADLTVGQFVYVIRKRIKLS 77 (127)
Q Consensus 53 ~KflVp~~~tv~~~~~~lRk~L~l~ 77 (127)
...+||.+.++.+|..-|++||++.
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4567999999999999999999876
No 97
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=40.20 E-value=23 Score=23.44 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=22.3
Q ss_pred EEEcCCCCCccchHHHHHhhhcCC--------CCeEEEEecCCc
Q 033114 84 IFVDNVLPPTGAIMSAIYEEKKDE--------DGFLYVTYSGEN 119 (127)
Q Consensus 84 lyVn~~lp~~~~~m~~lY~~~kd~--------DGfLYi~Ys~~~ 119 (127)
|||+| +.-..+.|.+++..|... -||-+|.|.+.+
T Consensus 42 lfVgn-l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~ 84 (121)
T 2bz2_A 42 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKME 84 (121)
T ss_dssp EEEEC-SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHH
T ss_pred EEEcC-CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHH
Confidence 45566 555556677777777542 477777776543
No 98
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=39.96 E-value=35 Score=22.78 Aligned_cols=48 Identities=6% Similarity=0.106 Sum_probs=36.5
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 52 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 52 k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
...|.|..+.++..++....++.+++++.--|+|-+..+ ..+.|..+|
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl-~~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEc-CCCCCHHHc
Confidence 346889999999999999999999998876677754444 334555544
No 99
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.08 E-value=29 Score=21.91 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=40.1
Q ss_pred eEEecCCCchHHHHHHHHHhh---CCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCCc
Q 033114 54 KYLVPADLTVGQFVYVIRKRI---KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGEN 119 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L---~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys~~~ 119 (127)
.+-|+.+.||+++...|..++ ++++++-- |+.++.....+.+|++ |+- ++..|++......
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qr-Li~~Gk~L~D~~tL~~----ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQK-LIYAGKILNDDTALKE----YKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEE-EEETTEECCTTSBGGG----GTCCSSSEEEEEESSCC
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhEE-EEECCEECCCcCcHHH----CCCCCCCEEEEEEeCCC
Confidence 456889999999999999984 57665433 3445655556667754 333 3447777665443
No 100
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=38.90 E-value=78 Score=20.48 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=40.6
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC--CC----CCccchHHH
Q 033114 33 DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN--VL----PPTGAIMSA 99 (127)
Q Consensus 33 ~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~--~l----p~~~~~m~~ 99 (127)
+-|+|.|.-..... .....-|+.+.||++|...|..+.++++++---+|.+. .. -..+.+|++
T Consensus 13 ~~v~l~It~s~~~~----~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 13 DSVHLHITHANLKS----FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCEEEEEEETTSSC----CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred ceEEEEEEECCCCc----eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 56777775421111 12345799999999999999999999877544444431 22 244556654
No 101
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=38.59 E-value=78 Score=24.55 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=34.9
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033114 51 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 118 (127)
Q Consensus 51 ~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~ 118 (127)
+.+-|.=..+++..+|...++..=.++ +. +.|++. .+-++|++ +.|..|+|+.|+.
T Consensus 52 ~~~~y~D~~di~~~efy~~~~~~~~~p-~T--------Sqps~~-~~~~~f~~--~~~~Ii~i~iSs~ 107 (298)
T 3jr7_A 52 EDTQWTDDDSLKQEELLLKIAESTSCA-KT--------SCPSPE-RYMESYHC--DAERIYVVTLSAE 107 (298)
T ss_dssp TTEEEECSTTSCHHHHHHHHHHCSSCC-EE--------ECCCHH-HHHHHHCS--SCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCCc-ee--------CCCCHH-HHHHHHHh--cCCeEEEEECCcc
Confidence 455566556889999999988642222 21 134443 35566663 4577999998874
No 102
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=38.34 E-value=26 Score=24.15 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=24.0
Q ss_pred hCCCCCceEEEEEcC-CCCCccchHHHHHhhhcC
Q 033114 74 IKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKD 106 (127)
Q Consensus 74 L~l~~~~slFlyVn~-~lp~~~~~m~~lY~~~kd 106 (127)
+.-.++.-|.|||.| ..+-..+.|.+|+..|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 344578889999998 456777789999999865
No 103
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.63 E-value=39 Score=22.50 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=44.5
Q ss_pred EecCCCchHHHHHHHHHhhCCCCC--------------ceEEEEEcCCC-CCccchHHHHHhhhcCCCCeEEEEecCCcc
Q 033114 56 LVPADLTVGQFVYVIRKRIKLSAE--------------KAIFIFVDNVL-PPTGAIMSAIYEEKKDEDGFLYVTYSGENT 120 (127)
Q Consensus 56 lVp~~~tv~~~~~~lRk~L~l~~~--------------~slFlyVn~~l-p~~~~~m~~lY~~~kd~DGfLYi~Ys~~~~ 120 (127)
-|+.+.||+++...|..+.++++. ...-|..++.. -..+.+|++ |. =+ ++.+|++.-.....
T Consensus 23 ~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d-yg-I~-~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 23 VVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD-YG-IR-NRDEVSFIKKLGQK 99 (105)
T ss_dssp EECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH-HT-CC-SSEEEEEEECSCSC
T ss_pred EECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH-cC-CC-CCCEEEEEehhccC
Confidence 488999999999999999877652 23444445544 445578887 22 12 34588888777766
Q ss_pred cCCC
Q 033114 121 FGSH 124 (127)
Q Consensus 121 fG~~ 124 (127)
+|-.
T Consensus 100 ~~~~ 103 (105)
T 1v2y_A 100 SGPS 103 (105)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6643
No 104
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=37.26 E-value=98 Score=22.74 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=42.1
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCC--ceEEEEEc-CC---CCCccchHHHHHhhhcCCCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAE--KAIFIFVD-NV---LPPTGAIMSAIYEEKKDEDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~--~slFlyVn-~~---lp~~~~~m~~lY~~~kd~DGfLYi~Ys 116 (127)
...+++..|+.+|...+++.++++++ -.|+.+-+ ++ +-..+.+|.++. =.+|..|.|-+-
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~---l~~~Q~illE~r 208 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAG---LYQGQVLVIEQK 208 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHT---CCTTCEEEEEEC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhC---CCCCCEEEEEEe
Confidence 46789999999999999999999875 56666554 33 345566777752 234555666554
No 105
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=37.16 E-value=88 Score=20.56 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=46.5
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCC-CCccchHHHHHhhhcC
Q 033114 48 PNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKD 106 (127)
Q Consensus 48 p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~l-p~~~~~m~~lY~~~kd 106 (127)
|.|.-+..-||++.-+.-+..+--...+.++..+ -+.-|+-+ -.++++-|++|=+|..
T Consensus 21 pklpfkvlsVPE~~PftAVlkfaaEeF~vp~~Ts-AiiT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 21 PRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATS-AIITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp TTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSE-EEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred CCCCceEEecCccCchHHHHHHHHHHcCCCccce-EEEecCCcccChhhccchhhhhcCc
Confidence 4555667789999999999999999999988765 44456554 7888999999999964
No 106
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=36.71 E-value=40 Score=23.03 Aligned_cols=58 Identities=7% Similarity=-0.018 Sum_probs=40.3
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys 116 (127)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++. .= ++..|++...
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~~L~d~~tL~~y----~i~~g~~l~l~~r 153 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEY----GLKPLSTVFMNLR 153 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-ECCeecCCCCCHHHc----CCCCCCEEEEEEe
Confidence 3568999999999999999999987764444 455554556676653 22 3446777654
No 107
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.52 E-value=51 Score=20.83 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=26.1
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCC-ceEEEEE
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFV 86 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~-~slFlyV 86 (127)
.-+|.++||++|...|.+..++++. +.|+++-
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 4589999999999999999999865 5555553
No 108
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.13 E-value=84 Score=19.73 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=33.0
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCC-ceEEE
Q 033114 33 DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAE-KAIFI 84 (127)
Q Consensus 33 ~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~-~slFl 84 (127)
..|.|.|.... .+ .....-|+.+.||+++...|..+.+++++ +.|++
T Consensus 6 ~~v~l~I~~~~---~~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 6 SGVMVFISSSL---NS--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp CCEEEEEEETT---SS--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred cEEEEEEEECC---CC--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 44777775431 11 23445799999999999999999999875 44444
No 109
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=34.54 E-value=8.3 Score=26.17 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
+-|+.+.||++|...|..+.++++++--.+| ++.....+.+|++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSDY 59 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEEE-CCEECCCCCchhhh
Confidence 4578889999999999998888876543333 44444556666653
No 110
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=34.50 E-value=33 Score=22.38 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=38.6
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhh--CCC-CCceEEEEEcCCCCCccchHHHHHh
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRI--KLS-AEKAIFIFVDNVLPPTGAIMSAIYE 102 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L--~l~-~~~slFlyVn~~lp~~~~~m~~lY~ 102 (127)
+..|.|.|.- +++... .-.+-|+.+.||++|...|..++ ..+ ..+.| +.++.....+.+|++...
T Consensus 21 ~~~m~I~VK~-~~g~~~---~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrL--Iy~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 21 GHPVTLIIKA-PNQKYS---DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRL--VYSGRLLPDHLQLKDILR 88 (99)
T ss_dssp --CEEEEEEC-TTSSSC---CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCE--EETTEEECTTSBTHHHHT
T ss_pred CCeEEEEEEc-CCCCEE---EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEE--EECCEECCCCCCHHHHhc
Confidence 3557777743 222210 11345699999999999999876 333 23333 335555567778887643
No 111
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=34.16 E-value=59 Score=23.32 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=29.0
Q ss_pred CCCceEEEEEcCC-CCCccchHHHHHhhhcCC----------CCeEEEEecCC
Q 033114 77 SAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDE----------DGFLYVTYSGE 118 (127)
Q Consensus 77 ~~~~slFlyVn~~-lp~~~~~m~~lY~~~kd~----------DGfLYi~Ys~~ 118 (127)
.++..+.|||+|- .+-....|.++|..|.+. .||=+|.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 94 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCH
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCH
Confidence 4667788999984 456666799999998642 34566666543
No 112
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=33.29 E-value=41 Score=20.81 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=27.4
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccc
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 95 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~ 95 (127)
.=+|+..|++++. ++|++++++. -+.+|+...+.|.
T Consensus 15 ~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 15 VAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred EEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 5688999999855 6789998887 4888987655554
No 113
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=33.27 E-value=41 Score=23.43 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=40.5
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys 116 (127)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .- ++..|++...
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~-~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 92 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKESTLHLVLR 92 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCccccccCCHhHc----CCcccceeeeeec
Confidence 4569999999999999999999988754433 455555667777663 22 3346666654
No 114
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=32.96 E-value=47 Score=20.42 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=23.9
Q ss_pred EEEcCCCC-CccchHHHHHhhhcC---------CCCeEEEEecCCc
Q 033114 84 IFVDNVLP-PTGAIMSAIYEEKKD---------EDGFLYVTYSGEN 119 (127)
Q Consensus 84 lyVn~~lp-~~~~~m~~lY~~~kd---------~DGfLYi~Ys~~~ 119 (127)
|||+|--+ -.++.|.+++.+|+. .-||-+|.|.+.+
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 55665322 345568888888864 2489999987654
No 115
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=32.94 E-value=39 Score=21.34 Aligned_cols=32 Identities=6% Similarity=-0.060 Sum_probs=25.5
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 86 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyV 86 (127)
--++.+.||+++..-|..+-++++++---+|.
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 35899999999999999999998764443333
No 116
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.35 E-value=51 Score=22.75 Aligned_cols=57 Identities=4% Similarity=-0.030 Sum_probs=39.9
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCC-CeEEEEec
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDED-GFLYVTYS 116 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~D-GfLYi~Ys 116 (127)
.-++.+.||++|...|-...+.+++.--.+| ++.....++||.+ |+=.| +-++|.-.
T Consensus 31 v~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy-~GKiLKD~eTL~~----~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSHLLGIPHSVLQIRY-SGKILKNNETLVQ----HGVKPQEIVQVEIF 88 (118)
T ss_dssp EEECSSSCSHHHHHHHHHHHTCCTTTEEEEE-TTEEECSSCCHHH----HSCCSSCEEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHhhhCCChHHEEEEE-CCeEcCCcchHHH----cCCCCCCEEEEEEe
Confidence 4588999999999999999998877655555 4555567788865 45533 34444433
No 117
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=30.90 E-value=89 Score=23.87 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=37.4
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCC-CCeEEEEecCC
Q 033114 51 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-DGFLYVTYSGE 118 (127)
Q Consensus 51 ~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~-DGfLYi~Ys~~ 118 (127)
+..-|.-..+++..+|...+++.=.+ |+. +.|++. .+-++|++..++ |..|+|+.|+.
T Consensus 33 ~~~~y~D~~di~~~efy~~~~~~~~~-p~T--------Sqps~~-~~~~~f~~l~~~~~~ii~i~lSs~ 91 (280)
T 2dt8_A 33 SGAIYRDWEEITPTEIFQKVREGAAF-PTT--------SQPSPE-DFARVYREALEEADHVLSLHISGK 91 (280)
T ss_dssp TTEEEETTTTCCHHHHHHHHHTTCCC-CEE--------ECCCHH-HHHHHHHHHTTSCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCC-ccc--------CCCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 44455555678999999988763222 222 134443 577888887544 77999998874
No 118
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.17 E-value=62 Score=20.33 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=13.4
Q ss_pred cchHHHHHhhhcC-------CCCeEEEEecCC
Q 033114 94 GAIMSAIYEEKKD-------EDGFLYVTYSGE 118 (127)
Q Consensus 94 ~~~m~~lY~~~kd-------~DGfLYi~Ys~~ 118 (127)
.+.|.+++..|.+ .|||=+|.|.+.
T Consensus 29 ~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~ 60 (108)
T 1x4c_A 29 WQDLKDHMREAGDVCYADVYRDGTGVVEFVRK 60 (108)
T ss_dssp HHHHHHHHGGGSCEEEEEEETTTEEEEEESSH
T ss_pred HHHHHHHHHhcCCEeEEEEecCCEEEEEECCH
Confidence 3345555555542 136666666654
No 119
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=29.75 E-value=85 Score=20.63 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=32.1
Q ss_pred ceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC
Q 033114 53 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 88 (127)
Q Consensus 53 ~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~ 88 (127)
-++.|..+.|+..|...|.++-++++.+-..||-+.
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~ 61 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 61 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 358899999999999999999999998888888774
No 120
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=29.09 E-value=18 Score=23.77 Aligned_cols=61 Identities=20% Similarity=0.379 Sum_probs=39.4
Q ss_pred EEec-CCCchHHHHHHHHHhhCCCCC-ceEEEEEcC-----------CC---CCccchHHHHHhhhcC-CCCeEEEEecC
Q 033114 55 YLVP-ADLTVGQFVYVIRKRIKLSAE-KAIFIFVDN-----------VL---PPTGAIMSAIYEEKKD-EDGFLYVTYSG 117 (127)
Q Consensus 55 flVp-~~~tv~~~~~~lRk~L~l~~~-~slFlyVn~-----------~l---p~~~~~m~~lY~~~kd-~DGfLYi~Ys~ 117 (127)
.-|. .+.||++|...|..+.++++. +.|++ .+. .+ ...+.+|+++ .- .+..|||.|..
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~-~~~~~~~k~~~~~~~l~~~l~d~~tL~~~----gi~~G~~L~l~~~~ 95 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLST-NRNLLLAKSPSDFLAFTDMADPNLRISSL----NLAHGSMVYLAYEG 95 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS-SGGGGTCCSHHHHTTCCSSCCTTCBGGGT----CCCTTCEEECCCSS
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCcccCEEEE-CCccccccCccccccccccCCCCCCHHHC----CCCCCCEEEEEeCC
Confidence 4578 899999999999999998765 34433 222 12 2444556543 32 23378998886
Q ss_pred Ccc
Q 033114 118 ENT 120 (127)
Q Consensus 118 ~~~ 120 (127)
+..
T Consensus 96 ~~~ 98 (107)
T 1wf9_A 96 ERT 98 (107)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 121
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=29.09 E-value=12 Score=26.69 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
+-|+.+.||++|...|..+.++++++--.+ .++.....+.+|++.
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~dy 59 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY 59 (152)
T ss_dssp ----------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEEccccCcHHHc
Confidence 457889999999999999999987654444 355545566777764
No 122
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=28.84 E-value=1.3e+02 Score=23.49 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=47.4
Q ss_pred cccEEEEccCCCCCC----------------CCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchH
Q 033114 34 RIPVIVEKAERSDIP----------------NIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIM 97 (127)
Q Consensus 34 ~ipVIvE~~~~~~~p----------------~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m 97 (127)
+|.||+... +++| .++.+-|.=..+++..+|...++..=.+ |+. +.|++ ..+
T Consensus 36 ki~IvTDSt--~dL~~e~~~~~~I~vvPL~v~~~~~~Y~D~~di~~~efy~~m~~~~~~-p~T--------SqPs~-~~~ 103 (315)
T 3fys_A 36 NIAVVTDST--AYIPKEMREQHQIHMIPLQVVFREETYREEIELDWKSFYEEVKKHNEL-PTT--------SQPPI-GEL 103 (315)
T ss_dssp CEEEEEEGG--GCCCHHHHHHHTEEEECCEEECSSCEEEBTTTBCHHHHHHHHHTTTCC-CEE--------ECCCH-HHH
T ss_pred cEEEEEECC--CCCCHHHHHhCCeEEEeEEEEECCEEEECCCCCCHHHHHHHHHhCCCC-ccc--------CCCCH-HHH
Confidence 577777665 4544 2355666666689999999998853112 121 13443 467
Q ss_pred HHHHhhhcC-CCCeEEEEecCC
Q 033114 98 SAIYEEKKD-EDGFLYVTYSGE 118 (127)
Q Consensus 98 ~~lY~~~kd-~DGfLYi~Ys~~ 118 (127)
-++|++..+ -|..|+|+.|+.
T Consensus 104 ~~~fe~l~~~~~~Ii~I~iSS~ 125 (315)
T 3fys_A 104 VALYEELGKSYDAVISIHLSSG 125 (315)
T ss_dssp HHHHHHHTTTCSEEEEEESCTT
T ss_pred HHHHHHHHhcCCcEEEEeCCCc
Confidence 888888765 477999998864
No 123
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=28.56 E-value=51 Score=27.79 Aligned_cols=61 Identities=11% Similarity=0.248 Sum_probs=44.0
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEc---CCC--CC-ccchHHHHHhhhcCCCCeEEEEe
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NVL--PP-TGAIMSAIYEEKKDEDGFLYVTY 115 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn---~~l--p~-~~~~m~~lY~~~kd~DGfLYi~Y 115 (127)
...|+.+.+++++...|+++++++++..|-||=. +.. .. ++.++.+.+++-.|-| .|+.+=
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~Gd-II~fQ~ 216 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGD-IIVFQK 216 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTE-EEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCC-EEEEEe
Confidence 3679999999999999999999999988877743 112 24 6678877776554322 555544
No 124
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.74 E-value=95 Score=20.53 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=27.8
Q ss_pred CCCCceEEEEEcCC-C-CCc---cchHHHHHhhhc-C----CCCeEEEEecCCc
Q 033114 76 LSAEKAIFIFVDNV-L-PPT---GAIMSAIYEEKK-D----EDGFLYVTYSGEN 119 (127)
Q Consensus 76 l~~~~slFlyVn~~-l-p~~---~~~m~~lY~~~k-d----~DGfLYi~Ys~~~ 119 (127)
.+|.+++ |||+|- . ... ...|.+|+.+|. . .-||=||.|.+.+
T Consensus 5 ~~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4566765 778772 2 222 224778999995 2 3589999887654
No 125
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=26.92 E-value=61 Score=22.04 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=45.5
Q ss_pred ccc--EEEEccCCCCCCCCcc-----ceEEecCCCchHHHHHHHHHhhCCCCC----ceEEEEEcC-------CC-CCcc
Q 033114 34 RIP--VIVEKAERSDIPNIDK-----KKYLVPADLTVGQFVYVIRKRIKLSAE----KAIFIFVDN-------VL-PPTG 94 (127)
Q Consensus 34 ~ip--VIvE~~~~~~~p~L~k-----~KflVp~~~tv~~~~~~lRk~L~l~~~----~slFlyVn~-------~l-p~~~ 94 (127)
.+| .|||..... +..+. .--+||++..+.|++...=.+|+...+ ..=-+-|+| .+ +.++
T Consensus 7 mlPV~CVVE~~~~~--~~~~~~~E~~syviI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p~ 84 (105)
T 3tuo_A 7 MLPVFCVVEHYENA--IEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAPD 84 (105)
T ss_dssp EEEEEEEEEEECCC--SSCCCEEEEEEEEEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCTT
T ss_pred ceeeEEEEEecccc--cccccccceeeEEEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCch
Confidence 456 477876432 12222 223899999999999999999998743 222456776 12 5788
Q ss_pred chHHHHHhh
Q 033114 95 AIMSAIYEE 103 (127)
Q Consensus 95 ~~m~~lY~~ 103 (127)
.|+|++..+
T Consensus 85 ~TV~d~L~e 93 (105)
T 3tuo_A 85 ATVADMLQD 93 (105)
T ss_dssp CBHHHHHTT
T ss_pred hhHHHHHHH
Confidence 999988654
No 126
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=26.80 E-value=35 Score=21.34 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=22.5
Q ss_pred EecCCCchHHHHHHHHHhhCCCC-CceEEE
Q 033114 56 LVPADLTVGQFVYVIRKRIKLSA-EKAIFI 84 (127)
Q Consensus 56 lVp~~~tv~~~~~~lRk~L~l~~-~~slFl 84 (127)
-|+.+.|+++|...|...++++. ..++++
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 36788899999999999998863 334443
No 127
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=26.65 E-value=49 Score=24.28 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=39.9
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~DGfLYi~Ys 116 (127)
.+-|+.+.||++|...|..+.++++++--.+ .++.....+.+|++. .- ++..|+|...
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi-~~Gk~L~D~~tL~dy----gI~~gstI~Lvlr 177 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKESTLHLVLR 177 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETTEECCTTCBGGGG----TCCTTCEEEECCC
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHEEEE-ECCEECCCCCCHHHC----CCCCCCEEEEEEE
Confidence 3568999999999999999999987654333 455555567777763 22 3346666543
No 128
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=26.65 E-value=50 Score=21.24 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=22.1
Q ss_pred EEEcCCC-CCccchHHHHHhhhcC-------CCCeEEEEecCCc
Q 033114 84 IFVDNVL-PPTGAIMSAIYEEKKD-------EDGFLYVTYSGEN 119 (127)
Q Consensus 84 lyVn~~l-p~~~~~m~~lY~~~kd-------~DGfLYi~Ys~~~ 119 (127)
|||.|-- -...+.|.+++..|.+ .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 4455422 2345567888887754 2388888887644
No 129
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=26.59 E-value=48 Score=23.51 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=40.9
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 116 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys 116 (127)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++. .-+ ++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~y--~I~-~gstI~Lvlr 72 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY--NIQ-KESTLHLVLR 72 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCTTTEEEE-ETTEECCTTSBGGGG--TCC-TTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHHEEEE-ECCccccCcCcHHHc--CCC-CCCEEEEEEE
Confidence 3568899999999999999999988765444 455545667777763 111 3346776654
No 130
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=26.22 E-value=95 Score=21.08 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=42.7
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 32 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 32 P~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
+++|-|.|.-.. +. .-.|.|..+.++..++....++.+++...--|+|=+..+ ..+.|..+|
T Consensus 38 ~~~I~LKV~~qd-g~-----ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI-~~~~TP~dL 99 (115)
T 3kyd_D 38 GEYIKLKVIGQD-SS-----EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL 99 (115)
T ss_dssp -CEEEEEEECTT-SC-----EEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEEcCC-CC-----EEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC-CCCCCHHHc
Confidence 467777774321 11 236899999999999999999999998877777754444 234444443
No 131
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=25.83 E-value=57 Score=20.12 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=35.3
Q ss_pred ecCCCchHHHHHHHHHhhCCCCCceEEEEEc--CCCC-C-ccchHHHHHhhhcCCCCeEEEEecC
Q 033114 57 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVD--NVLP-P-TGAIMSAIYEEKKDEDGFLYVTYSG 117 (127)
Q Consensus 57 Vp~~~tv~~~~~~lRk~L~l~~~~slFlyVn--~~lp-~-~~~~m~~lY~~~kd~DGfLYi~Ys~ 117 (127)
|+.+.||+++...|..+.++.+..--.+|-. ..+. + .+.+|+++= -+ ....|++....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~g--l~-~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLP--IQ-SGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSS--CC-TTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcC--CC-CCCEEEEEeCC
Confidence 6789999999999999999875433333321 1231 2 455665531 11 23367776654
No 132
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.73 E-value=46 Score=20.14 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=9.7
Q ss_pred ecCCCchHHHHHHHHHh
Q 033114 57 VPADLTVGQFVYVIRKR 73 (127)
Q Consensus 57 Vp~~~tv~~~~~~lRk~ 73 (127)
+|.+.|-.++..++.+.
T Consensus 16 Lp~~~t~~~l~~~F~~~ 32 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGDR 32 (93)
T ss_dssp CCTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHc
Confidence 55666666665555443
No 133
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=25.58 E-value=40 Score=25.59 Aligned_cols=83 Identities=12% Similarity=0.176 Sum_probs=42.2
Q ss_pred cccccCCHHHHHHHHHHHHhhCC-----CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEE
Q 033114 10 YFKQEHDLEKRRAEAARIREKYP-----DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI 84 (127)
Q Consensus 10 ~fK~~~s~e~R~~e~~~ir~kyP-----~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFl 84 (127)
+|...-++++--.-...--++-| ++|-|-|. . .+ ....|.|..+.++..++....++.++++..--|+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~d~KP~~dp~e~InLKVk-~-dG-----~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFL 100 (207)
T 3tix_A 28 QFEKTGSLQDSEVNQEAKPEVKPEVKPETHINLKVS-D-GS-----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFL 100 (207)
T ss_dssp ---------------------------CCEEEEEEE-C-SS-----CEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEE
T ss_pred cccccccccccccCCCCCCCCCCCCCCCCcEEEEEe-c-CC-----CEEEEEEccCChHHHHHHHHHHHhCCCcccEEEE
Confidence 55555555443332222223333 45666663 2 12 3457999999999999999999999999877788
Q ss_pred EEcCCCCCccchHHHH
Q 033114 85 FVDNVLPPTGAIMSAI 100 (127)
Q Consensus 85 yVn~~lp~~~~~m~~l 100 (127)
|=+..+ ..+.|..+|
T Consensus 101 FDGqRI-~~ddTPeDL 115 (207)
T 3tix_A 101 YDGIEI-QADQTPEDL 115 (207)
T ss_dssp ETTEEC-CSSCCTTTT
T ss_pred ECCeec-CCCCCHHHc
Confidence 744444 234444443
No 134
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=24.56 E-value=28 Score=29.46 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=37.1
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCC--CceEEEE--EcCC---CCCccchHHHHHh
Q 033114 52 KKKYLVPADLTVGQFVYVIRKRIKLSA--EKAIFIF--VDNV---LPPTGAIMSAIYE 102 (127)
Q Consensus 52 k~KflVp~~~tv~~~~~~lRk~L~l~~--~~slFly--Vn~~---lp~~~~~m~~lY~ 102 (127)
.-.++||++-||+++..-++++.+++. ...|-|+ .|+. ..+.+.++..|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 456789999999999999999999864 3334332 3444 3577777877766
No 135
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=24.54 E-value=59 Score=22.33 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=46.3
Q ss_pred ecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcC-C-------CCeEEEEecCCcccCC
Q 033114 57 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-E-------DGFLYVTYSGENTFGS 123 (127)
Q Consensus 57 Vp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd-~-------DGfLYi~Ys~~~~fG~ 123 (127)
|..+.||+++...|..+.++++.+--.+| ++.....+.||++ |+= . +--|++.+...+.|..
T Consensus 18 ve~sdTV~~lK~kI~~~~giPp~qQrLI~-~Gk~LeD~kTL~d----y~I~~~ta~~q~~atl~Lvlr~~~~fE~ 87 (118)
T 4ajy_B 18 AKESSTVFELKRIVEGILKRPPDEQRLYK-DDQLLDDGKTLGE----CGFTSQTARPQAPATVGLAFRADDTFEA 87 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTTT----TTCCGGGSBTTBCEEEEEEECCSSCCCC
T ss_pred cCCCChHHHHHHHHHHHHCCCHHHeEEEe-CCeECCCcCCHHH----cCCCcCcccCCCCCEEEEEEecCCCccc
Confidence 78999999999999999999987654444 5555666777765 221 2 5589999988777764
No 136
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=24.05 E-value=1e+02 Score=20.48 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=38.6
Q ss_pred cceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHH
Q 033114 52 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 100 (127)
Q Consensus 52 k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~l 100 (127)
-..|.|-.+..+..++...-+|.+++++.-.|||=+..+ +.++|-.+|
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI-~~~~TP~~L 79 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL-SPTATPRTL 79 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC-CTTSCHHHH
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC-CCCCCHhHc
Confidence 457899999999999999999999999988888766555 444555555
No 137
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=23.71 E-value=59 Score=25.01 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=35.4
Q ss_pred ccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccchHHHHHhhhcCC--CCeEEEEecCC
Q 033114 51 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE--DGFLYVTYSGE 118 (127)
Q Consensus 51 ~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~~m~~lY~~~kd~--DGfLYi~Ys~~ 118 (127)
+.+-|.=..+++..+|...++..=.++ +. +.|++ ..+-++|++..++ |..|+|+.|+.
T Consensus 36 ~~~~y~D~~di~~~efy~~~~~~~~~p-~T--------Sqps~-~~~~~~f~~l~~~g~d~ii~i~iSs~ 95 (285)
T 3lup_A 36 DGKTYIEGQNLTLDQYYDKLAASKELP-KT--------SQPSL-AELDDLLCQLEKEGYTHVLGLFIAAG 95 (285)
T ss_dssp SSSCCCBTTTBCHHHHHHHHHHCSSCC-EE--------CCCCH-HHHHHHHHHHHHTTCCEEEECCSCGG
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCCc-ee--------CCCCH-HHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 334444445778889998887542222 11 13443 4577888877643 56899888764
No 138
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=23.68 E-value=86 Score=28.80 Aligned_cols=51 Identities=8% Similarity=0.236 Sum_probs=35.4
Q ss_pred eEEecCCCchHHHHHHHHHhhCCCCCc----eEEEEEcCCCC------CccchHHHHHhhhc
Q 033114 54 KYLVPADLTVGQFVYVIRKRIKLSAEK----AIFIFVDNVLP------PTGAIMSAIYEEKK 105 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~l~~~~----slFlyVn~~lp------~~~~~m~~lY~~~k 105 (127)
+|-|+.++|+.+|+..+++++++.... .--||. ..+| ..+.+|.+|++.-.
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~~ly~-~~~~~~~~~~~l~~~l~~l~~~~~ 981 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYA-SFFPPKKLKERLNLPITQLVKLVT 981 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTEEEEE-TTCCHHHHHHHTTSBHHHHHHHHS
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCcEEEe-cCCCchhhHHhccCCHHHHHHhhc
Confidence 667878999999999999998875321 011232 2334 46778999998853
No 139
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.31 E-value=80 Score=19.17 Aligned_cols=9 Identities=22% Similarity=0.921 Sum_probs=4.7
Q ss_pred CeEEEEecC
Q 033114 109 GFLYVTYSG 117 (127)
Q Consensus 109 GfLYi~Ys~ 117 (127)
||-||.|.+
T Consensus 53 g~afV~f~~ 61 (99)
T 2div_A 53 GYCFVEFAD 61 (99)
T ss_dssp EEEEEECSC
T ss_pred CEEEEEeCC
Confidence 455555544
No 140
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=23.30 E-value=57 Score=19.59 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=24.7
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCceEEEEEcCCCCCccc
Q 033114 55 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 95 (127)
Q Consensus 55 flVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~~lp~~~~ 95 (127)
+-++...|++++... |++++. .+.+.||+.+.+.+.
T Consensus 18 ~~~~~~~tv~~Ll~~----l~~~~~-~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 18 LESGAPRRIKDVLGE----LEIPIE-TVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEESSCCBHHHHHHH----TTCCTT-TEEEEETTEECCTTS
T ss_pred EECCCCCcHHHHHHH----hCCCCC-CEEEEECCEECCCcc
Confidence 567888899987664 456654 466889987644444
No 141
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=23.26 E-value=52 Score=20.96 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=27.9
Q ss_pred eEEecCCCchHHHHHHHHHhhC-CC---------CCceEEEEEcCCCCCccc
Q 033114 54 KYLVPADLTVGQFVYVIRKRIK-LS---------AEKAIFIFVDNVLPPTGA 95 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~-l~---------~~~slFlyVn~~lp~~~~ 95 (127)
.+-++...|+++++..|..+.. +. ....+-++||+...+.+.
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~ 81 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE 81 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCC
Confidence 3456788999999999987631 11 124577899987644443
No 142
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=23.26 E-value=86 Score=19.24 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHHHhhCCCcccEEEEccCCCC---CCCCccceEEecCCCchHHHHHHHHHhhCCC
Q 033114 22 AEAARIREKYPDRIPVIVEKAERSD---IPNIDKKKYLVPADLTVGQFVYVIRKRIKLS 77 (127)
Q Consensus 22 ~e~~~ir~kyP~~ipVIvE~~~~~~---~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~ 77 (127)
.-...+++.+| .+|||+=...... ...++.. -.+.+..+..++...|++-+.-.
T Consensus 68 ~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~~-~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 68 QVARVAREIDP-NMPIVYISGHAALEWASNGVPDS-IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp HHHHHHHHHCT-TCCEEEEESSCCTTHHHHSCTTC-EEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC-CCCEEEEeCCccHHHHHhhcCCc-ceEeCCCCHHHHHHHHHHHHhcC
Confidence 34566777766 6887774432211 0011111 24666778888888888776543
No 143
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=23.01 E-value=59 Score=23.92 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.2
Q ss_pred HHHHHhhCCCCCceEEEEEc
Q 033114 68 YVIRKRIKLSAEKAIFIFVD 87 (127)
Q Consensus 68 ~~lRk~L~l~~~~slFlyVn 87 (127)
.-||++|++.+++.|.+++.
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 45899999999999999997
No 144
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=22.69 E-value=38 Score=21.02 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=27.5
Q ss_pred eEEecCCCchHHHHHHHHHhhC------CCCC----ceEEEEEcCCCCCccc
Q 033114 54 KYLVPADLTVGQFVYVIRKRIK------LSAE----KAIFIFVDNVLPPTGA 95 (127)
Q Consensus 54 KflVp~~~tv~~~~~~lRk~L~------l~~~----~slFlyVn~~lp~~~~ 95 (127)
.+-+|...|+++++..|..+.. +..+ ..+-++||+.....+.
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~ 72 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGE 72 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTS
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCc
Confidence 3456778899999999987642 2211 2367889986544343
No 145
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.42 E-value=42 Score=20.20 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=13.9
Q ss_pred cchHHHHHhhhcC---------CCCeEEEEecCCc
Q 033114 94 GAIMSAIYEEKKD---------EDGFLYVTYSGEN 119 (127)
Q Consensus 94 ~~~m~~lY~~~kd---------~DGfLYi~Ys~~~ 119 (127)
.+.|.+++..|.. .-||-||.|.+.+
T Consensus 19 e~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 19 EDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQ 53 (88)
T ss_dssp HHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHH
T ss_pred HHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHH
Confidence 3345556666532 2466666666543
No 146
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=22.30 E-value=1.3e+02 Score=19.82 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=30.6
Q ss_pred cCCCCCCCCccceEEe-cCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033114 42 AERSDIPNIDKKKYLV-PADLTVGQFVYVIRKRIKLSAEKAIFIFV 86 (127)
Q Consensus 42 ~~~~~~p~L~k~KflV-p~~~tv~~~~~~lRk~L~l~~~~slFlyV 86 (127)
.++++.|++... +++ |...|+.+|...|.+.|.-+ -.|-.|
T Consensus 17 k~~G~~pd~~dp-viL~~~GsTv~Dfa~~IH~di~~~---fkyA~V 58 (93)
T 2eki_A 17 KPKGQLPDYTSP-VVLPYSRTTVEDFCMKIHKNLIKE---FKYALV 58 (93)
T ss_dssp CCTTSCCCSSSC-EEEETTSCCHHHHHHHHCTTCTTT---EEEEEE
T ss_pred CCCCCCCCCCCC-EEEecCCCCHHHHHHHHHHHHHhh---ccEEEE
Confidence 456788888775 455 99999999999998887544 345555
No 147
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=22.29 E-value=77 Score=24.50 Aligned_cols=100 Identities=11% Similarity=0.121 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC---------CCCCc-cceEEecCCC-----chHHHHHHHHHhhCCCC
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD---------IPNID-KKKYLVPADL-----TVGQFVYVIRKRIKLSA 78 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~---------~p~L~-k~KflVp~~~-----tv~~~~~~lRk~L~l~~ 78 (127)
.-|.|||.+-.+...+.-..++|||+--...+. +-.+. .--.++|.-. +-.++..+.+.=..- .
T Consensus 63 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a-~ 141 (307)
T 3s5o_A 63 FLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADL-S 141 (307)
T ss_dssp GSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHH-C
T ss_pred hCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhh-c
Confidence 357799999999999988999999996543211 00110 0122334332 334555555432211 1
Q ss_pred CceEEEEEcC---CCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033114 79 EKAIFIFVDN---VLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 118 (127)
Q Consensus 79 ~~slFlyVn~---~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~ 118 (127)
.-.++||=+- ...-..+++.+|- ++ +.+.-|.+++-
T Consensus 142 ~lPiilYn~P~~tg~~l~~~~~~~La-~~---pnIvgiKdssg 180 (307)
T 3s5o_A 142 PIPVVLYSVPANTGLDLPVDAVVTLS-QH---PNIVGMXDSGG 180 (307)
T ss_dssp SSCEEEEECHHHHSCCCCHHHHHHHH-TS---TTEEEEEECSC
T ss_pred CCCEEEEeCCcccCCCCCHHHHHHHh-cC---CCEEEEEcCCC
Confidence 2457887642 1222334566665 22 45777777653
No 148
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=21.74 E-value=96 Score=20.34 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=31.2
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEEcC
Q 033114 48 PNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 88 (127)
Q Consensus 48 p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyVn~ 88 (127)
|...+.+..|..+.++.|+...--++.++++++- -|.-|+
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~-~Lkh~~ 56 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEY-DLKFQR 56 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGC-EEEETT
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhC-eEEeCC
Confidence 4456888999999999999999999999987653 333344
No 149
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.44 E-value=57 Score=25.18 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=55.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCc-cceEEecCCC---chHHHHHHHHHhhCCCCCc
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--I-------PNID-KKKYLVPADL---TVGQFVYVIRKRIKLSAEK 80 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~--~-------p~L~-k~KflVp~~~---tv~~~~~~lRk~L~l~~~~ 80 (127)
.-|.|||++-.+...+.-..++|||+--...+- + -.+. .--.++|.-. +-.+++.+.+.=..-. .-
T Consensus 53 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~l 131 (300)
T 3eb2_A 53 YLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAV-EI 131 (300)
T ss_dssp GCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC-SS
T ss_pred ccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC-CC
Confidence 357799999999999888899999996543211 0 0000 0112233221 3445555544322211 24
Q ss_pred eEEEEEcCC---CCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033114 81 AIFIFVDNV---LPPTGAIMSAIYEEKKDEDGFLYVTYSGE 118 (127)
Q Consensus 81 slFlyVn~~---lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~ 118 (127)
.++||=+-. ..-..+++.+|- + .+.+.-|.+++-
T Consensus 132 PiilYn~P~~tg~~l~~~~~~~La-~---~pnIvgiKdssg 168 (300)
T 3eb2_A 132 PVVIYTNPQFQRSDLTLDVIARLA-E---HPRIRYIKDAST 168 (300)
T ss_dssp CEEEEECTTTCSSCCCHHHHHHHH-T---STTEEEEEECSS
T ss_pred CEEEEECccccCCCCCHHHHHHHH-c---CCCEEEEEcCCC
Confidence 588886532 222235677772 2 356888888764
No 150
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.36 E-value=1.1e+02 Score=18.66 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=9.6
Q ss_pred ecCCCchHHHHHHHHHh
Q 033114 57 VPADLTVGQFVYVIRKR 73 (127)
Q Consensus 57 Vp~~~tv~~~~~~lRk~ 73 (127)
+|.+.|-.++..++.+.
T Consensus 27 L~~~~t~~~l~~~F~~~ 43 (97)
T 2e5j_A 27 LPRDARVSDLKRALREL 43 (97)
T ss_dssp CCTTCCHHHHHHHHHHT
T ss_pred CCCcCcHHHHHHHHHhc
Confidence 45566666665555543
No 151
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=21.01 E-value=65 Score=24.93 Aligned_cols=100 Identities=10% Similarity=0.012 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCc-cceEEecCC---CchHHHHHHHHHhhCCCCCc
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--I-------PNID-KKKYLVPAD---LTVGQFVYVIRKRIKLSAEK 80 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~--~-------p~L~-k~KflVp~~---~tv~~~~~~lRk~L~l~~~~ 80 (127)
.-|.|||++-.+...+.-..++|||+--...+- + -.+. .--.++|.- .+-.++..+.+.=..-- +-
T Consensus 64 ~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~l 142 (304)
T 3l21_A 64 TTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-EL 142 (304)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CC
Confidence 346799999999999888899999996543211 0 0000 011233322 13455555554433222 44
Q ss_pred eEEEEEcC---CCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033114 81 AIFIFVDN---VLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 118 (127)
Q Consensus 81 slFlyVn~---~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~ 118 (127)
.++||=+- ...-..+++.+|- + .+.+.-|.+++-
T Consensus 143 PiilYn~P~~tg~~l~~~~~~~La-~---~pnIvgiKdssg 179 (304)
T 3l21_A 143 PMLLYDIPGRSAVPIEPDTIRALA-S---HPNIVGVXDAKA 179 (304)
T ss_dssp CEEEEECHHHHSSCCCHHHHHHHH-T---STTEEEEEECSC
T ss_pred CEEEEeCccccCCCCCHHHHHHHh-c---CCCEEEEECCCC
Confidence 68888542 1233345667775 2 345777777764
No 152
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=20.71 E-value=45 Score=20.10 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=23.1
Q ss_pred cCCCchHHHHHHHHHhhC-----CCCCceEEEEEcCCCCCcc
Q 033114 58 PADLTVGQFVYVIRKRIK-----LSAEKAIFIFVDNVLPPTG 94 (127)
Q Consensus 58 p~~~tv~~~~~~lRk~L~-----l~~~~slFlyVn~~lp~~~ 94 (127)
+...|++++...|..+.. +. ...+.+.||+...+.+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~-~~~~~v~vN~~~v~~~ 63 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALE-DGKLLAAVNQTLVSFD 63 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHC-CTTCEEEETTEECCTT
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhc-CCCEEEEECCEECCCC
Confidence 466799999988875521 22 2346789998654333
No 153
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=20.55 E-value=69 Score=24.48 Aligned_cols=101 Identities=10% Similarity=0.054 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEEecCCC---chHHHHHHHHHhhCCCCCc
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--IPNIDK--------KKYLVPADL---TVGQFVYVIRKRIKLSAEK 80 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~--~p~L~k--------~KflVp~~~---tv~~~~~~lRk~L~l~~~~ 80 (127)
.-|.|||++-.+...+.-..++|||+--...+. +-.+-+ --.++|.-. +-.++..+.+.=..- ..-
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a-~~l 127 (289)
T 2yxg_A 49 TLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAES-INL 127 (289)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CSS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCC
Confidence 357799999999888888889999987654321 000000 112233322 334444444432211 123
Q ss_pred eEEEEEcC---CCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033114 81 AIFIFVDN---VLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 118 (127)
Q Consensus 81 slFlyVn~---~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~ 118 (127)
.++||=+- ...-..+++.+|-+++ +.+.-|.+++-
T Consensus 128 PiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiK~s~g 165 (289)
T 2yxg_A 128 PIVLYNVPSRTAVNLEPKTVKLLAEEY---SNISAVKEANP 165 (289)
T ss_dssp CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred CEEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEeCCC
Confidence 57887652 1233345678886444 45777777653
No 154
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=20.40 E-value=91 Score=24.19 Aligned_cols=99 Identities=10% Similarity=0.100 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC---------CCCCc--cceEEecCCC---chHHHHHHHHHhhCCCCC
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD---------IPNID--KKKYLVPADL---TVGQFVYVIRKRIKLSAE 79 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~---------~p~L~--k~KflVp~~~---tv~~~~~~lRk~L~l~~~ 79 (127)
.-|.|||++-.+...+.-..++|||+--...+- +-.+. .--.++|.-. +-.++..+.+.=..- ..
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a-~~ 134 (311)
T 3h5d_A 56 TLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADA-SD 134 (311)
T ss_dssp GSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHS-CS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh-CC
Confidence 356799999999999998999999996543210 11111 1123343321 334555555433221 13
Q ss_pred ceEEEEEcC---CCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033114 80 KAIFIFVDN---VLPPTGAIMSAIYEEKKDEDGFLYVTYSG 117 (127)
Q Consensus 80 ~slFlyVn~---~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~ 117 (127)
-.++||=+- ...-..+++.+|-+ .+.+.-|.+|+
T Consensus 135 lPiilYn~P~~tg~~l~~~~~~~La~----~pnIvgiKdss 171 (311)
T 3h5d_A 135 LPIIIYNIPGRVVVELTPETMLRLAD----HPNIIGVKECT 171 (311)
T ss_dssp SCEEEEECHHHHSSCCCHHHHHHHHT----STTEEEEEECS
T ss_pred CCEEEEecccccCCCCCHHHHHHHhc----CCCEEEEEeCC
Confidence 468888542 12223345666653 25677777776
No 155
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.25 E-value=72 Score=24.40 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 43 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~ 43 (127)
.-|.|||++-.+...+.-..++|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~ 79 (291)
T 3a5f_A 50 TMTETERKETIKFVIDKVNKRIPVIAGTGS 79 (291)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 357799999888888888889999986654
No 156
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=20.17 E-value=94 Score=23.79 Aligned_cols=102 Identities=10% Similarity=0.027 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCcc-ceEEecCC----CchHHHHHHHHHhhCCCC-
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--I-------PNIDK-KKYLVPAD----LTVGQFVYVIRKRIKLSA- 78 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~--~-------p~L~k-~KflVp~~----~tv~~~~~~lRk~L~l~~- 78 (127)
.-|.|||++-.+...+.-..++|||+--...+- + -.+.= --.++|.- .+-.++..+.+.=..-.|
T Consensus 52 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~ 131 (294)
T 3b4u_A 52 SVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGK 131 (294)
T ss_dssp GSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCT
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 457799999999999888899999987654311 0 00000 11122221 133445544443221111
Q ss_pred -CceEEEEEcC---CCCCccchHHHHHhhhcCCCC-eEEEEecCC
Q 033114 79 -EKAIFIFVDN---VLPPTGAIMSAIYEEKKDEDG-FLYVTYSGE 118 (127)
Q Consensus 79 -~~slFlyVn~---~lp~~~~~m~~lY~~~kd~DG-fLYi~Ys~~ 118 (127)
.-.++||=+- ...-..+++.+|-+++ +. +.-|.+++-
T Consensus 132 ~~lPiilYn~P~~tg~~l~~~~~~~La~~~---pn~ivgiKds~g 173 (294)
T 3b4u_A 132 DARDILVYNIPSVTMVTLSVELVGRLKAAF---PGIVTGVKDSSG 173 (294)
T ss_dssp TCCCEEEEECHHHHSCCCCHHHHHHHHHHC---TTTEEEEEECCC
T ss_pred CCCcEEEEECcchhCcCCCHHHHHHHHHhC---CCcEEEEEECCC
Confidence 2357887652 1233345678886444 45 777777663
No 157
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=20.15 E-value=72 Score=24.50 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 43 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~ 43 (127)
.-|.|||++-.+...+.-..++|||+--..
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 85 (297)
T 3flu_A 56 TLSVEEHTAVIEAVVKHVAKRVPVIAGTGA 85 (297)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 457799999999998888899999996543
No 158
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=20.13 E-value=70 Score=24.85 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEcc
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKA 42 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~ 42 (127)
.-|.|||++-.+...+.-..++|||+--.
T Consensus 61 ~Ls~eEr~~v~~~~v~~~~grvpViaGvg 89 (316)
T 3e96_A 61 ALSLEEAKEEVRRTVEYVHGRALVVAGIG 89 (316)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 34679999999999988889999999764
No 159
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=20.08 E-value=72 Score=24.84 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 43 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~ 43 (127)
.-|.|||++-.+...+.-..++|||+--..
T Consensus 72 ~Ls~~Er~~v~~~~v~~~~grvpViaGvg~ 101 (314)
T 3qze_A 72 TLDVEEHIQVIRRVVDQVKGRIPVIAGTGA 101 (314)
T ss_dssp GCCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 346799999999988888899999996543
No 160
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=20.05 E-value=71 Score=24.45 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=53.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCcc-ceEEecCCC---chHHHHHHHHHhhCCCCCc
Q 033114 14 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--I-------PNIDK-KKYLVPADL---TVGQFVYVIRKRIKLSAEK 80 (127)
Q Consensus 14 ~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~--~-------p~L~k-~KflVp~~~---tv~~~~~~lRk~L~l~~~~ 80 (127)
.-|.|||++-.+...+.-..++|||+--...+. + -.+.= --.++|.-. +-.++..+.+.=..- ..-
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~l 127 (294)
T 2ehh_A 49 TLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQE-VDI 127 (294)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CCS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCC
Confidence 457799999888888888889999987654321 0 00000 112233322 334455444432211 123
Q ss_pred eEEEEEcC---CCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033114 81 AIFIFVDN---VLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 118 (127)
Q Consensus 81 slFlyVn~---~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~ 118 (127)
.++||=+- ...-..+++.+|-+++ +.+.-|.+++-
T Consensus 128 PiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiKds~g 165 (294)
T 2ehh_A 128 PIIIYNIPSRTCVEISVDTMFKLASEC---ENIVASKESTP 165 (294)
T ss_dssp CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred CEEEEeCCcccCcCCCHHHHHHHHhhC---CCEEEEEeCCC
Confidence 57777642 1223345677776444 44666666653
No 161
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=20.03 E-value=2e+02 Score=18.96 Aligned_cols=49 Identities=4% Similarity=0.043 Sum_probs=33.4
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033114 33 DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 86 (127)
Q Consensus 33 ~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyV 86 (127)
..|.|.|..... + .....-|+.+.||++|...|..+.+++++.---+|.
T Consensus 5 ~~v~l~V~~~~~---~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 5 EVYDLEITTNAT---D--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEEEESSC---C--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred CEEEEEEEECCC---C--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 356777754321 1 223457999999999999999999998764333333
Done!