BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033115
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G5U|A Chain A, Latex Profilin Hevb8
pdb|1G5U|B Chain B, Latex Profilin Hevb8
Length = 131
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 88/110 (80%)
Query: 18 SSATTAAFGPRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGA 77
++A G S F K +E+ +M DF+EPG+LAPTGL+LGGTKYMVIQGEPGA
Sbjct: 22 AAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGA 81
Query: 78 VIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127
VIRGKKG GG+T+K+T ALIIGIYDEP+TPGQCNMIVERLGDYL+DQGL
Sbjct: 82 VIRGKKGSGGITVKRTGQALIIGIYDEPLTPGQCNMIVERLGDYLLDQGL 131
>pdb|1CQA|A Chain A, Birch Pollen Profilin
Length = 133
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 86/110 (78%)
Query: 18 SSATTAAFGPRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGA 77
+SA G S F KP+EITGIM DF EPG LAPTGL+LGG KYMVIQGE GA
Sbjct: 24 ASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGA 83
Query: 78 VIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127
VIRGKKG GG+TIKKT AL+ GIY+EP+TPGQCNM+VERLGDYLIDQGL
Sbjct: 84 VIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIDQGL 133
>pdb|1A0K|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 131
Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 84/110 (76%)
Query: 18 SSATTAAFGPRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGA 77
++A G S +F LKP+EI GI DF EPG LAPTGL+LGG KYMVIQGE GA
Sbjct: 22 AAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGA 81
Query: 78 VIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127
VIRGKKGPGGVTIKKT+ AL+ G YDEPMT GQCN++VERLGDYLI+ L
Sbjct: 82 VIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 131
>pdb|3NUL|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 130
Score = 145 bits (365), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 82/110 (74%)
Query: 18 SSATTAAFGPRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGA 77
++A G S +F LKP+EI GI DF EPG LAPTGL+LGG KY VIQGE GA
Sbjct: 21 AAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYXVIQGEQGA 80
Query: 78 VIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127
VIRGKKGPGGVTIKKT+ AL+ G YDEP T GQCN++VERLGDYLI+ L
Sbjct: 81 VIRGKKGPGGVTIKKTNQALVFGFYDEPXTGGQCNLVVERLGDYLIESEL 130
>pdb|1F2K|A Chain A, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii,
Cubic Crystal Form
pdb|1F2K|B Chain B, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii,
Cubic Crystal Form
pdb|2ACG|A Chain A, Acanthamoeba Castellanii Profilin Ii
Length = 125
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 36 FLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSA 95
F + P + N F + + G L GT+Y+ I+ + +V GKKG GV KTS
Sbjct: 35 FAVSPANGAALANAFKDATAIRSNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSK 93
Query: 96 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127
A++IG+Y+E + PG +VE+L DYLI QG
Sbjct: 94 AILIGVYNEKIQPGTAANVVEKLADYLIGQGF 125
>pdb|1ACF|A Chain A, Acanthamoeba Castellanii Profilin Ib
Length = 125
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 36 FLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSA 95
F + P + T + FN + G L G Y+ ++ + + I GKKG GV KTS
Sbjct: 35 FAVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRADDRS-IYGKKGSSGVITVKTSK 93
Query: 96 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127
A+++G+Y+E + PG +VE+L DYLI QG
Sbjct: 94 AILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125
>pdb|1PRQ|A Chain A, Acanthamoeba Castellanii Profilin Ia
pdb|2PRF|A Chain A, Three Dimensional Solution Structure Of Acanthamoeba
Profilin I
Length = 125
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 36 FLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSA 95
F + P + + + FN + +G L G Y+ ++ + + I GKKG GV KTS
Sbjct: 35 FAVTPAQGQTLASAFNNADPIRASGFDLAGVHYVTLRADDRS-IYGKKGSAGVITVKTSK 93
Query: 96 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127
++++G+Y+E + PG +VE+L DYLI QG
Sbjct: 94 SILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125
>pdb|3D9Y|A Chain A, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3D9Y|B Chain B, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3DAV|A Chain A, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
pdb|3DAV|B Chain B, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
Length = 127
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 19 SATTAAFGPRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAV 78
+A + G V + F L P+EI G+ F +P ++ TG+ L G KY+ I+ E G
Sbjct: 20 AAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAE-GRS 78
Query: 79 IRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 126
I GK G+ T +++ Y E PG+ I E L DYL+ G
Sbjct: 79 IYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVG 126
>pdb|1YPR|A Chain A, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1YPR|B Chain B, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1K0K|A Chain A, Yeast Profilin, Cubic Crystal Form
Length = 125
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 38 LKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAAL 97
L+P EI I+ F+ P L GL++ G K+M+++ + + I G+ GV +T +
Sbjct: 37 LQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRADDRS-IYGRHDAEGVVCVRTKQTV 95
Query: 98 IIGIYDEPMTPGQCNMIVERLGDYLI 123
II Y + G+ IVE+L DYLI
Sbjct: 96 IIAHYPPTVQAGEATKIVEQLADYLI 121
>pdb|3NEC|A Chain A, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|B Chain B, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|C Chain C, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|D Chain D, Crystal Structure Of Toxoplasma Gondii Profilin
Length = 166
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 57 APTGLYLGGTKYMVIQGEPG--------AVIRGKKGPGGVTIKKT-SAALIIGIYDEPMT 107
AP G+++GG KY V++ E G + + GG + KT + +++I +YDE
Sbjct: 85 APNGVWIGGQKYKVVRPEKGFEYNDCTFDITXCARSKGGAHLIKTPNGSIVIALYDEEKE 144
Query: 108 PGQCNMIVERL--GDYLIDQGL 127
+ N L +YL G
Sbjct: 145 QDKGNSRTSALAFAEYLHQSGY 166
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 46 IMNDFNEPGTLAPTGLYL-GGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDE 104
I ++F + +P + G + + I+ + G ++GKKG VTI K+ + +D
Sbjct: 30 ITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDA 89
Query: 105 PMTPG 109
+ PG
Sbjct: 90 LLLPG 94
>pdb|2JKF|A Chain A, Plasmodium Falciparum Profilin
pdb|2JKG|A Chain A, Plasmodium Falciparum Profilin
Length = 179
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 50 FNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRG--------KKGPGGVTIKKT-SAALIIG 100
FNE AP G++LGGTKY I E G K GG+ + K +++
Sbjct: 85 FNEG--YAPDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLKGGLHLVKVPGGNILVV 142
Query: 101 IYDEPMTPGQCNMIVERL 118
+YDE + N + L
Sbjct: 143 LYDEEKEQDRGNSKIAAL 160
>pdb|4AWY|B Chain B, Crystal Structure Of The Mobile Metallo-Beta-Lactamase
Aim-1 From Pseudomonas Aeruginosa: Insights Into
Antibiotic Binding And The Role Of Gln157
pdb|4AWZ|A Chain A, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
pdb|4AWZ|B Chain B, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
pdb|4AWZ|C Chain C, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 17 LSSATTAAFGPRVKTSLRFFLLKPEEITGIM---NDFNEPGTLA 57
L A T GP++ ++R +PE++ I+ F+ G+LA
Sbjct: 71 LVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLA 114
>pdb|4AX0|B Chain B, Q157a Mutant. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 17 LSSATTAAFGPRVKTSLRFFLLKPEEITGIM---NDFNEPGTLA 57
L A T GP++ ++R +PE++ I+ F+ G+LA
Sbjct: 71 LVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLA 114
>pdb|4AX1|B Chain B, Q157n Mutant. Crystal Structure Of The Mobile
Metallo-Beta- Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 17 LSSATTAAFGPRVKTSLRFFLLKPEEITGIM---NDFNEPGTLA 57
L A T GP++ ++R +PE++ I+ F+ G+LA
Sbjct: 71 LVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLA 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,864,109
Number of Sequences: 62578
Number of extensions: 154311
Number of successful extensions: 293
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 19
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)