Query 033115
Match_columns 127
No_of_seqs 105 out of 408
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nul_A Profilin I; cytoskeleto 100.0 1.7E-42 5.7E-47 244.6 15.7 113 15-127 18-130 (130)
2 1ypr_A Profilin; actin-binding 100.0 2E-41 6.8E-46 237.7 14.2 113 13-127 12-125 (125)
3 1acf_A Profilin I; protein bin 100.0 1.9E-41 6.7E-46 237.6 13.0 113 13-127 13-125 (125)
4 3d9y_A Profilin; yeast, actin- 100.0 2.2E-41 7.5E-46 237.9 13.0 112 14-127 15-127 (127)
5 2v8f_A Profilin-2, profilin II 100.0 8.4E-38 2.9E-42 223.1 13.8 113 13-127 14-140 (140)
6 2pbd_P Profilin-1, profilin I; 100.0 1.9E-37 6.6E-42 221.0 14.0 113 13-127 13-139 (139)
7 3nec_A Profilin, inflammatory 100.0 5.6E-36 1.9E-40 219.0 9.4 113 13-127 18-166 (166)
8 2jkg_A Profilin; proline-rich 100.0 1.4E-35 4.6E-40 217.8 8.3 113 13-127 18-171 (179)
9 3leq_A Uncharacterized protein 89.4 2.3 8E-05 28.5 7.8 96 17-122 20-116 (126)
10 1vet_B P14, late endosomal/lys 88.2 1.5 5E-05 29.6 6.1 95 17-124 20-117 (125)
11 1j3w_A Giding PROTEIN-MGLB; gl 83.2 4.6 0.00016 28.4 6.9 96 16-123 29-134 (163)
12 4g29_A Secreted effector prote 42.8 18 0.00062 26.1 2.9 21 107-127 38-58 (186)
13 3t12_B Gliding protein MGLB; G 32.1 87 0.003 21.1 4.9 98 16-124 26-132 (136)
14 2c71_A Glycoside hydrolase, fa 30.5 69 0.0024 22.7 4.4 31 96-127 150-180 (216)
15 2d0s_A Cytochrome C, cytochrom 28.9 40 0.0014 19.3 2.5 18 34-51 59-76 (79)
16 2eap_A Lymphocyte cytosolic pr 28.7 18 0.00061 23.2 0.9 12 116-127 25-36 (90)
17 1v74_A Colicin D; colicin D - 28.5 44 0.0015 22.0 2.7 33 8-44 65-97 (107)
18 3rfo_A Methionyl-tRNA formyltr 28.4 1.8E+02 0.0062 22.1 6.7 37 34-74 216-252 (317)
19 3nx6_A 10KDA chaperonin; bacte 27.7 44 0.0015 21.4 2.6 18 57-74 71-88 (95)
20 1p3h_A 10 kDa chaperonin; beta 26.5 38 0.0013 21.9 2.1 18 57-74 74-91 (99)
21 2bln_A Protein YFBG; transfera 26.3 1.7E+02 0.006 22.0 6.3 38 34-74 209-246 (305)
22 2wj8_A Nucleoprotein; RNA bind 26.3 20 0.00069 28.2 0.9 29 98-126 333-361 (391)
23 3zzp_A TS9, ribosomal protein 25.4 1.2E+02 0.004 18.4 5.5 64 37-126 13-76 (77)
24 3q0i_A Methionyl-tRNA formyltr 25.4 2.1E+02 0.0071 21.8 6.6 65 34-104 219-283 (318)
25 2jmk_A Hypothetical protein TA 24.9 1.3E+02 0.0045 19.4 4.5 21 107-127 85-105 (111)
26 2e5z_A SFRS8 protein, splicing 24.9 56 0.0019 20.7 2.7 20 107-126 20-39 (90)
27 1pcq_O Groes protein; chaperon 24.6 55 0.0019 21.0 2.7 18 57-74 72-89 (97)
28 3tqq_A Methionyl-tRNA formyltr 23.7 2E+02 0.0068 21.8 6.2 65 34-104 214-278 (314)
29 4gxt_A A conserved functionall 23.7 80 0.0027 24.7 4.0 31 19-50 42-84 (385)
30 2cc0_A Acetyl-xylan esterase; 23.3 81 0.0028 21.7 3.6 19 109-127 159-177 (195)
31 3itw_A Protein TIOX; bleomycin 22.1 64 0.0022 20.1 2.7 30 18-47 106-135 (137)
32 1ayg_A Cytochrome C-552; elect 21.9 53 0.0018 18.9 2.1 17 33-50 60-76 (80)
33 1bvy_F Protein (cytochrome P45 21.9 1.3E+02 0.0043 21.0 4.4 31 94-127 21-51 (191)
34 1we3_O CPN10(groes); chaperoni 21.6 41 0.0014 21.7 1.6 18 57-74 76-93 (100)
35 1x4o_A Splicing factor 4; stru 20.7 92 0.0031 18.9 3.0 17 110-126 16-32 (78)
No 1
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=100.00 E-value=1.7e-42 Score=244.64 Aligned_cols=113 Identities=65% Similarity=1.045 Sum_probs=110.3
Q ss_pred CCceEEEEcCCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeCCCcEEEeecCCCcEEEEeCC
Q 033115 15 LPLSSATTAAFGPRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTS 94 (127)
Q Consensus 15 ~~~~aAI~g~dG~vWA~s~~f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d~~~~i~~kkg~~G~~i~KT~ 94 (127)
....|||+|+||++||+|++||+++|+|++.|++.|+||+.++.+||+|+|+||+++|+|+++++|+||+++|++++||+
T Consensus 18 ~~~~aAIig~dGsvWA~s~gf~~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~~ir~d~~~~i~~kkg~~Gv~i~kT~ 97 (130)
T 3nul_A 18 HLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTN 97 (130)
T ss_dssp CCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEEEEETTTEEEEEETTEEEEEEECS
T ss_pred cEeeEEEEeCCCCEEEcCCCcccCCHHHHHHHHHhccCchhhccCCEEECCeEEEEEEeCCCcEEEEecCCCeEEEEECC
Confidence 77889999999999999999999999999999999999999999999999999999999877899999999999999999
Q ss_pred cEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 033115 95 AALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 95 ~aiVIg~y~~~~~~g~~~~~ve~lAdyL~~~Gy 127 (127)
|++|||+|+++++|++|+++||+|||||+++||
T Consensus 98 ~aivig~y~e~~~~g~~~~~ve~ladYL~~~GY 130 (130)
T 3nul_A 98 QALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 130 (130)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999998
No 2
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=100.00 E-value=2e-41 Score=237.70 Aligned_cols=113 Identities=29% Similarity=0.473 Sum_probs=109.6
Q ss_pred CCCCceEEEEcCCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeCCCcEEEeecCCCcEEEE
Q 033115 13 SQLPLSSATTAAFG-PRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIK 91 (127)
Q Consensus 13 ~~~~~~aAI~g~dG-~vWA~s~~f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d~~~~i~~kkg~~G~~i~ 91 (127)
++....|||+++|| ++||+|++| +++|+|++.|+++|+||+.++.+||+|+|+||+++|.| ++++|+||+++|++++
T Consensus 12 ~g~~~~aAI~g~DG~svwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gl~l~G~KY~~i~~d-~~~i~~kk~~~Gi~i~ 89 (125)
T 1ypr_A 12 TGKVDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRAD-DRSIYGRHDAEGVVCV 89 (125)
T ss_dssp TSSCSEEEEEETTSCCEEEEESCC-CCCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEEC-SSEEEEEETTEEEEEE
T ss_pred CCCccEEEEEeCCCCcEEEECCCC-ccCHHHHHHHHHhccCcchhccCCeEECCEEEEEEecC-CcEEEEecCCceEEEE
Confidence 45677899999999 999999999 99999999999999999888999999999999999999 9999999999999999
Q ss_pred eCCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 033115 92 KTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 92 KT~~aiVIg~y~~~~~~g~~~~~ve~lAdyL~~~Gy 127 (127)
||+|++|||+|+++++|++|+++||+|||||+++||
T Consensus 90 kT~~aivI~~y~e~~~~g~~~~~ve~ladYL~~~gy 125 (125)
T 1ypr_A 90 RTKQTVIIAHYPPTVQAGEATKIVEQLADYLIGVQY 125 (125)
T ss_dssp ECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999998
No 3
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=100.00 E-value=1.9e-41 Score=237.63 Aligned_cols=113 Identities=34% Similarity=0.578 Sum_probs=110.0
Q ss_pred CCCCceEEEEcCCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeCCCcEEEeecCCCcEEEEe
Q 033115 13 SQLPLSSATTAAFGPRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKK 92 (127)
Q Consensus 13 ~~~~~~aAI~g~dG~vWA~s~~f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d~~~~i~~kkg~~G~~i~K 92 (127)
++.+..|||+++||++||+|++| +++|+|++.|+++|+||+.++.+||+|+|+||+++|.| |+++|+|++++|++++|
T Consensus 13 ~g~~~~aAIig~dGsvwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~i~~d-~~~i~~kk~~~Gv~i~k 90 (125)
T 1acf_A 13 TGAVTQAAILGLDGNTWATSAGF-AVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRAD-DRSIYGKKGSSGVITVK 90 (125)
T ss_dssp GTSCSEEEEEETTSCEEEECTTC-CCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEES-SSEEEEEETTEEEEEEE
T ss_pred CCCcceEEEEcCCCCEEEecCCC-ccCHHHHHHHHHHhcCcchhhcCCeEECCEEEEEEEec-CcEEEeecCCCeEEEEE
Confidence 46788999999999999999999 99999999999999999889999999999999999999 99999999999999999
Q ss_pred CCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 033115 93 TSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 93 T~~aiVIg~y~~~~~~g~~~~~ve~lAdyL~~~Gy 127 (127)
|+|++|||+|+++++|++|+++||+|||||+++||
T Consensus 91 T~~aivI~~y~~~~~~g~~~~~ve~ladyL~~~gy 125 (125)
T 1acf_A 91 TSKAILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125 (125)
T ss_dssp CSSEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999998
No 4
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=100.00 E-value=2.2e-41 Score=237.94 Aligned_cols=112 Identities=32% Similarity=0.526 Sum_probs=108.8
Q ss_pred CCCceEEEEcCCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeCCCcEEEeecCCCcEEEEe
Q 033115 14 QLPLSSATTAAFG-PRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKK 92 (127)
Q Consensus 14 ~~~~~aAI~g~dG-~vWA~s~~f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d~~~~i~~kkg~~G~~i~K 92 (127)
+....|||+++|| ++||+|++| +++|+|++.|++.|+||+.++.+||+|+|+||+++|.| ++++|+||+++|++++|
T Consensus 15 ~~~~~aAI~g~dG~svwA~s~gf-~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~vir~d-~~~i~~kkg~~Gv~i~k 92 (127)
T 3d9y_A 15 GKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAE-GRSIYGKLQKEGIICVA 92 (127)
T ss_dssp SSCCEEEEEETTSSCEEEECTTC-CCCHHHHHHHHHHHHSTTHHHHHCEEETTEEEEEEEEC-SSEEEEEETTEEEEEEE
T ss_pred CceeeEEEEeCCCCeEEEeCCCC-ccCHHHHHHHHHHhcCcchhhcCCEEEcCeEEEEEEeC-cceEEEEcCCceEEEEE
Confidence 5677899999999 799999999 99999999999999999999999999999999999999 89999999999999999
Q ss_pred CCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 033115 93 TSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 93 T~~aiVIg~y~~~~~~g~~~~~ve~lAdyL~~~Gy 127 (127)
|+|++|||+|+++++|++|+++||+|||||+++||
T Consensus 93 T~~aivi~~y~e~~~~g~~~~~ve~ladYL~~~Gy 127 (127)
T 3d9y_A 93 TKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127 (127)
T ss_dssp CSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999998
No 5
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=100.00 E-value=8.4e-38 Score=223.15 Aligned_cols=113 Identities=23% Similarity=0.286 Sum_probs=107.8
Q ss_pred CCCCceEEEEcCCC--CEEEecCC--CCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEe----CCCcE--EEee
Q 033115 13 SQLPLSSATTAAFG--PRVKTSLR--FFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQG----EPGAV--IRGK 82 (127)
Q Consensus 13 ~~~~~~aAI~g~dG--~vWA~s~~--f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~----d~~~~--i~~k 82 (127)
++....|||+|+|| ++||+|++ |++++|+|++.|+ . +||+.++.+|++|+|+||+++|. |++++ +|+|
T Consensus 14 ~g~v~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~l~G~Ky~~ir~~l~~d~~~~~di~~k 91 (140)
T 2v8f_A 14 DGCCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIV-G-KDREGFFTNGLTLGAKKCSVIRDSLYVDGDCTMDIRTK 91 (140)
T ss_dssp TSCEEEEEEEECSSSCSEEEECTTSSGGGCCHHHHHHHH-S-SCSSHHHHHCEEETTEEEEEEEEETTSTTTCEEEEEEC
T ss_pred cCCcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-CCccccccCCeEECCEEEEEEecccccCCCceEEEEEe
Confidence 35677899999999 99999999 9999999999999 7 99999999999999999999999 76788 9999
Q ss_pred cCCCc----EEEEeCCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 033115 83 KGPGG----VTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 83 kg~~G----~~i~KT~~aiVIg~y~~~~~~g~~~~~ve~lAdyL~~~Gy 127 (127)
|+++| ++++||+|++||++|+++++|++|+++||+|||||+++||
T Consensus 92 k~~~G~~~~v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 140 (140)
T 2v8f_A 92 SQGGEPTYNVAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLRDSGF 140 (140)
T ss_dssp CCSSSCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCceeEEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999 9999999999999999999999999999999999999998
No 6
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=100.00 E-value=1.9e-37 Score=221.00 Aligned_cols=113 Identities=21% Similarity=0.240 Sum_probs=107.5
Q ss_pred CCCCceEEEEcCCC--CEEEecCC--CCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEe----CCCcEE--Eee
Q 033115 13 SQLPLSSATTAAFG--PRVKTSLR--FFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQG----EPGAVI--RGK 82 (127)
Q Consensus 13 ~~~~~~aAI~g~dG--~vWA~s~~--f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~----d~~~~i--~~k 82 (127)
++....|||+|+|| ++||+|++ |++++|+|++.|+ . .||+.++.+|++|+|+||+++|. |+++++ |+|
T Consensus 13 ~g~~~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~lgG~Ky~~ir~~~~~d~~~~id~~~k 90 (139)
T 2pbd_P 13 DGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLV-G-KDRSSFYVNGLTLGGQKCSVIRDSLLQDGEFSMDLRTK 90 (139)
T ss_dssp TSCEEEEEEEESSSSCEEEEECTTSSGGGCCHHHHHHHH-S-SCCSTHHHHCEEETTEEEEEEEEETTCTTTCEEEEEEC
T ss_pred cCCcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-cCcccccccCeEECCEEEEEEecccccCCCcEEeeeec
Confidence 35677899999999 99999999 9999999999999 6 88999999999999999999999 767888 999
Q ss_pred cCCCc----EEEEeCCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 033115 83 KGPGG----VTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 83 kg~~G----~~i~KT~~aiVIg~y~~~~~~g~~~~~ve~lAdyL~~~Gy 127 (127)
|+++| ++++||+|++||++|+++++|++|+++||+|||||+++||
T Consensus 91 k~~~G~~~~v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 139 (139)
T 2pbd_P 91 STGGAPTFNVTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139 (139)
T ss_dssp CSTTCCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCceEEEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999 9999999999999999999999999999999999999998
No 7
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=100.00 E-value=5.6e-36 Score=218.96 Aligned_cols=113 Identities=22% Similarity=0.379 Sum_probs=105.1
Q ss_pred CCCCceEEEEc-CCCCEEEecCCC------------------------CCCCHHHHHHHHHhcCCCCCcCccceEEcCEE
Q 033115 13 SQLPLSSATTA-AFGPRVKTSLRF------------------------FLLKPEEITGIMNDFNEPGTLAPTGLYLGGTK 67 (127)
Q Consensus 13 ~~~~~~aAI~g-~dG~vWA~s~~f------------------------~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~K 67 (127)
.+....|||++ +||++||+|++| ++++|+|+++|++.|+++ ++.+||+|+|+|
T Consensus 18 ~g~v~~AAI~g~~DG~vWA~s~~~~~~w~~~~~~~y~~~v~~~~g~~~~~~~~~E~~~i~~~f~~~--~~~~Gl~lgG~K 95 (166)
T 3nec_A 18 TGYCCAGGIANAEDGVVFAAAADDDDGWSKLYKDDHEEDTIGEDGNACGKVSINEASTIKAAVDDG--SAPNGVWIGGQK 95 (166)
T ss_dssp TSSCSEEEEEETTTCCEEEEEETTSCHHHHHCCCCEEEEEECTTSCEEEEEEECHHHHHHHHHHHS--CCTTCEEETTEE
T ss_pred cCceeEEEEEecCCCCEEeecCCCCcccccccccccccccccccccccccCCHHHHHHHHHHhhcC--CccCCeEEeCeE
Confidence 35778899999 799999999999 467999999999999884 478999999999
Q ss_pred EEEEEeCCC--------cEEEeecCCCcEEEEeCCc-EEEEEEeCCC--CCcchHHHHHHHHHHHHHhCCC
Q 033115 68 YMVIQGEPG--------AVIRGKKGPGGVTIKKTSA-ALIIGIYDEP--MTPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 68 Y~~~r~d~~--------~~i~~kkg~~G~~i~KT~~-aiVIg~y~~~--~~~g~~~~~ve~lAdyL~~~Gy 127 (127)
|+++|.|++ +++|+||+++|++++||+| +||||+|+++ ++|++|+++||+|||||+++||
T Consensus 96 Y~~ir~d~~~~~~~~~~~~i~~kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~ladYL~~~GY 166 (166)
T 3nec_A 96 YKVVRPEKGFEYNDCTFDITMCARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQSGY 166 (166)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEecCCccccccceeEEEeccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 999999943 6899999999999999999 9999999999 9999999999999999999998
No 8
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=100.00 E-value=1.4e-35 Score=217.77 Aligned_cols=113 Identities=24% Similarity=0.328 Sum_probs=105.0
Q ss_pred CCCCceEEEEcC-CCCEEEecC------------------CCC-CC----------CHHHHHHHHHhcCCCCCcCccceE
Q 033115 13 SQLPLSSATTAA-FGPRVKTSL------------------RFF-LL----------KPEEITGIMNDFNEPGTLAPTGLY 62 (127)
Q Consensus 13 ~~~~~~aAI~g~-dG~vWA~s~------------------~f~-~l----------~~~E~~~i~~~f~~~~~~~~~Gi~ 62 (127)
+++...|||+++ ||++||+|+ +|+ ++ +|+|+++|+++|++ .+.++||+
T Consensus 18 tG~v~~AaI~g~~DG~vwA~s~~~~e~~~~~~~w~~~~k~~f~~~v~~e~g~~~~~~~~E~~~I~~~f~~--~~~~~Gv~ 95 (179)
T 2jkg_A 18 TNQVSGAGLASEEDGVVYACVAQGEESDPNFDKWSLFYKEDYDIEVEDENGTKTTKTINEGQTILVVFNE--GYAPDGVW 95 (179)
T ss_dssp GSSCSEEEEEETTTCCEEEEEESSCTTSTTCCGGGGTCCCCEEEEEECTTCCEEEEEECHHHHHHHHHHH--SCCTTCEE
T ss_pred cCCEehheeecccCCCEEEecCccccccccccchhhhccCCchhhhccccCccccCCHHHHHHHHHHHhc--CCCCCCEE
Confidence 457888999999 999999999 886 68 99999999999977 57789999
Q ss_pred EcCEEEEEEEeCCC--------cEEEeecCCCcEEEEeC-CcEEEEEEeCCC--CCcchHHHHHHHHHHHHHhCCC
Q 033115 63 LGGTKYMVIQGEPG--------AVIRGKKGPGGVTIKKT-SAALIIGIYDEP--MTPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 63 l~G~KY~~~r~d~~--------~~i~~kkg~~G~~i~KT-~~aiVIg~y~~~--~~~g~~~~~ve~lAdyL~~~Gy 127 (127)
|+|+||+++|.|+| +++|+||+++|++++|| +|+||||+|+++ ++|++|+++|++|||||+++||
T Consensus 96 lgG~KY~~i~~d~d~~~~~~~~~~i~gkKgkgGv~ivKT~~qaiVIg~YdE~k~~~~g~c~~~ve~LadYL~~~Gy 171 (179)
T 2jkg_A 96 LGGTKYQFINIERDLEFEGYNFDVATCAKLKGGLHLVKVPGGNILVVLYDEEKEQDRGNSKIAALTFAKELAESSQ 171 (179)
T ss_dssp ETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEETTTEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHC--
T ss_pred ECCEEEEEEEecCCccccCcceeEEEEecCCCcEEEEEECCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHcCc
Confidence 99999999999977 89999999999999999 999999999999 9999999999999999999997
No 9
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=89.36 E-value=2.3 Score=28.51 Aligned_cols=96 Identities=10% Similarity=0.075 Sum_probs=51.0
Q ss_pred ceEEEEcCCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeCCCcEEEeecCCCcEEEEeCC-c
Q 033115 17 LSSATTAAFGPRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTS-A 95 (127)
Q Consensus 17 ~~aAI~g~dG~vWA~s~~f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d~~~~i~~kkg~~G~~i~KT~-~ 95 (127)
.++++.+.||-+-+++.+.+...+|-+.++...+-.-......-+..+..+-++++.+ +..+ ++.... .
T Consensus 20 ~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~-~G~l---------~v~~ag~~ 89 (126)
T 3leq_A 20 DHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMG-KGYL---------ILTAAGPG 89 (126)
T ss_dssp EEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECS-SCEE---------EEEESSTT
T ss_pred eEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeC-CCEE---------EEEEeCCC
Confidence 3577999999999998777222344555555554221111122244566777888877 3333 333333 3
Q ss_pred EEEEEEeCCCCCcchHHHHHHHHHHHH
Q 033115 96 ALIIGIYDEPMTPGQCNMIVERLGDYL 122 (127)
Q Consensus 96 aiVIg~y~~~~~~g~~~~~ve~lAdyL 122 (127)
+++...-+.+.+.|.....+.++++.+
T Consensus 90 a~L~vla~~~a~lG~v~~em~~~v~ri 116 (126)
T 3leq_A 90 AHLVVLTRQGADVGVVAYQMNMLVKKI 116 (126)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 666677788888877665555554443
No 10
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=88.19 E-value=1.5 Score=29.61 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=64.9
Q ss_pred ceEEEEcCCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCcCccc---eEEcCEEEEEEEeCCCcEEEeecCCCcEEEEeC
Q 033115 17 LSSATTAAFGPRVKTSLRFFLLKPEEITGIMNDFNEPGTLAPTG---LYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT 93 (127)
Q Consensus 17 ~~aAI~g~dG~vWA~s~~f~~l~~~E~~~i~~~f~~~~~~~~~G---i~l~G~KY~~~r~d~~~~i~~kkg~~G~~i~KT 93 (127)
.++++++.||-+-|++.+= ....+-+.+++..+-.- ....| +.-++.+..++..| ++-+++...
T Consensus 20 ~~a~lvs~DGllia~s~~~-~~dae~laAias~~~sl--~~~~~~~~~~~g~~~q~~ve~~----------~G~l~i~~a 86 (125)
T 1vet_B 20 QSTLLLNNEGSLLAYSGYG-DTDARVTAAIASNIWAA--YDRNGNQAFNEDSLKFILMDCM----------EGRVAITRV 86 (125)
T ss_dssp EEEEEECTTCCEEEEEECC-SSCHHHHHHHHHHHHHH--HHHHHCCTTTCCCCCEEEEEET----------TEEEEEEEE
T ss_pred eEEEEECCCCCeEEecCCC-CccHHHHHHHHHHHHHH--HHHHHHHhcCCCCcEEEEEEeC----------CCEEEEEEc
Confidence 4577899999999998663 66777777777765210 00000 11255677777777 233333334
Q ss_pred CcEEEEEEeCCCCCcchHHHHHHHHHHHHHh
Q 033115 94 SAALIIGIYDEPMTPGQCNMIVERLGDYLID 124 (127)
Q Consensus 94 ~~aiVIg~y~~~~~~g~~~~~ve~lAdyL~~ 124 (127)
..+++....+++.+.|.....+.++++||.+
T Consensus 87 ~~a~L~Vla~~~a~lGlv~~~m~~lv~~L~~ 117 (125)
T 1vet_B 87 ANLLLCMYAKETVGFGMLKAKAQALVQYLEE 117 (125)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHHhh
Confidence 4678888888899999999999999999865
No 11
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=83.22 E-value=4.6 Score=28.39 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=55.8
Q ss_pred CceEEEEcCCCCEEEe-----cCCCCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeCCCcEEEeecCCCcEEE
Q 033115 16 PLSSATTAAFGPRVKT-----SLRFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTI 90 (127)
Q Consensus 16 ~~~aAI~g~dG~vWA~-----s~~f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d~~~~i~~kkg~~G~~i 90 (127)
-.++++++.||-+-++ +... . ..+-+.++...+-.-......-+.-++.+-++++.+ ++-+++
T Consensus 29 v~~avlvs~DGl~ia~~~~~~~~~~-~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~----------~g~l~v 96 (163)
T 1j3w_A 29 ARYALLIDRKGFVLAHKEALWAPKP-P-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGE----------RMGLYV 96 (163)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCCC-S-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECS----------SCEEEE
T ss_pred ceEEEEEcCCCCEEEeecccccCCC-C-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeC----------CcEEEE
Confidence 3568899999999999 7677 5 666666665544211100011122244455566666 223333
Q ss_pred EeCC-cEEEEEEeCCCCCcchHHH----HHHHHHHHHH
Q 033115 91 KKTS-AALIIGIYDEPMTPGQCNM----IVERLGDYLI 123 (127)
Q Consensus 91 ~KT~-~aiVIg~y~~~~~~g~~~~----~ve~lAdyL~ 123 (127)
..-. .++++...+...+.|...- +++++++.|.
T Consensus 97 ~~~g~~a~L~Vla~~~a~lG~v~~~m~~~v~~l~~~L~ 134 (163)
T 1j3w_A 97 DEAGEHALLVLVFDETAPLGKVKLHGKRASEALARIAE 134 (163)
T ss_dssp EESSTTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCeEEEEEeCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3333 3778888888888887554 5555555554
No 12
>4g29_A Secreted effector protein SSEI; cysteine protease superfamily, protein binding; 1.70A {Salmonella enterica subsp} PDB: 4g2b_A
Probab=42.79 E-value=18 Score=26.07 Aligned_cols=21 Identities=19% Similarity=0.703 Sum_probs=19.4
Q ss_pred CcchHHHHHHHHHHHHHhCCC
Q 033115 107 TPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 107 ~~g~~~~~ve~lAdyL~~~Gy 127 (127)
+.++|...++.++++|++.||
T Consensus 38 P~~~Ce~s~~~V~~~Lk~~gy 58 (186)
T 4g29_A 38 PVGQCESLMTPVSNFMNEKGF 58 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhCCC
Confidence 568999999999999999997
No 13
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=32.13 E-value=87 Score=21.09 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=51.8
Q ss_pred CceEEEEcCCCCEEEecCC-C--CCCCHHHHHHHHHh-cCCCCCcCccceEEcCEEEEEEEeCCCcEEEeecCCCcEEEE
Q 033115 16 PLSSATTAAFGPRVKTSLR-F--FLLKPEEITGIMND-FNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIK 91 (127)
Q Consensus 16 ~~~aAI~g~dG~vWA~s~~-f--~~l~~~E~~~i~~~-f~~~~~~~~~Gi~l~G~KY~~~r~d~~~~i~~kkg~~G~~i~ 91 (127)
..++.+++.||-+-++... | .++..+-+.+++.. |.-.. .-+=.++...+ +.++-.-.+..+++.
T Consensus 26 v~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~---~la~~Lge~~~--------~~l~~eGe~~~i~i~ 94 (136)
T 3t12_B 26 ARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQ---ALAKLLGEARF--------QEEVHQGERMGLYVD 94 (136)
T ss_dssp CSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHH---HHHHHTTCSCC--------CCEEEECSSCEEEEE
T ss_pred CeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHH---HHHHHHCCCch--------hHheEEcCcCCEEEE
Confidence 3467799999988888643 1 14455556655543 11000 00000111111 111211224456666
Q ss_pred eCC-cEEEEEEeCCCCCcch----HHHHHHHHHHHHHh
Q 033115 92 KTS-AALIIGIYDEPMTPGQ----CNMIVERLGDYLID 124 (127)
Q Consensus 92 KT~-~aiVIg~y~~~~~~g~----~~~~ve~lAdyL~~ 124 (127)
... .++++..++...+-|- .++++++|++-|.+
T Consensus 95 ~vg~~~iLvvifd~~~~LG~Vrl~~kka~~~l~~il~~ 132 (136)
T 3t12_B 95 EAGEHALLVLVFDETAPLGKVKLHGKAAAAALAAIAEE 132 (136)
T ss_dssp ESSTTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCEEEEEEeCCCCCceEeeehHHHHHHHHHHHHHH
Confidence 664 5999999999888776 45566666665554
No 14
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=30.53 E-value=69 Score=22.66 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=21.7
Q ss_pred EEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 033115 96 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 96 aiVIg~y~~~~~~g~~~~~ve~lAdyL~~~Gy 127 (127)
.||+.+ +....+.+..++...+-++|+++||
T Consensus 150 ~IiL~H-d~~~~~~~t~~al~~ii~~l~~~Gy 180 (216)
T 2c71_A 150 TIILLH-DVQPEPHPTPEALDIIIPTLKSRGY 180 (216)
T ss_dssp BEEEEE-SCCSSSCCHHHHHHHHHHHHHHTTC
T ss_pred cEEEEE-CCCCChHHHHHHHHHHHHHHHHCCC
Confidence 344444 4322345677899999999999998
No 15
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=28.90 E-value=40 Score=19.35 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHHhcC
Q 033115 34 RFFLLKPEEITGIMNDFN 51 (127)
Q Consensus 34 ~f~~l~~~E~~~i~~~f~ 51 (127)
.|..|+++|+..|++.+.
T Consensus 59 ~~~~Ls~~ei~~l~~yl~ 76 (79)
T 2d0s_A 59 PHPQVAEADIEKIVRWVL 76 (79)
T ss_dssp CCTTSCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 455789999999998764
No 16
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.73 E-value=18 Score=23.19 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=10.3
Q ss_pred HHHHHHHHhCCC
Q 033115 116 ERLGDYLIDQGL 127 (127)
Q Consensus 116 e~lAdyL~~~Gy 127 (127)
+.+||||++.||
T Consensus 25 ~~VadWLkk~g~ 36 (90)
T 2eap_A 25 DSLADYFKKLNY 36 (90)
T ss_dssp TTHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 578999999887
No 17
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=28.51 E-value=44 Score=22.02 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=23.7
Q ss_pred EEEeeCCCCceEEEEcCCCCEEEecCCCCCCCHHHHH
Q 033115 8 LRVTISQLPLSSATTAAFGPRVKTSLRFFLLKPEEIT 44 (127)
Q Consensus 8 ~~~~~~~~~~~aAI~g~dG~vWA~s~~f~~l~~~E~~ 44 (127)
.+|-.+-.+.-++|++.||+-|. || .|+|++.+
T Consensus 65 skVy~N~~T~~~Viid~~g~Fvs---Gw-Kl~p~q~q 97 (107)
T 1v74_A 65 SKVYFNPNTMNVVIIKSNGEFLS---GW-KINPDADN 97 (107)
T ss_dssp CEEEECTTTCEEEEECTTSCEEE---EE-ECCTTSHH
T ss_pred cEEEEeCCCCeEEEEcCCCCEEE---EE-EcCCCchh
Confidence 34556667777999999998765 66 66666544
No 18
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=28.39 E-value=1.8e+02 Score=22.15 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeC
Q 033115 34 RFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGE 74 (127)
Q Consensus 34 ~f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d 74 (127)
+| +-+.+|+..++++|+ |-. ..=..++|+++.+.++.
T Consensus 216 dw-~~~a~~i~~~iRa~~-p~P--ga~~~~~g~~~ki~~a~ 252 (317)
T 3rfo_A 216 DW-TKTGEEVYNHIRGLN-PWP--VAYTTLAGQVVKVWWGE 252 (317)
T ss_dssp CT-TSCHHHHHHHHHHTT-TTT--CCEEEETTEEEEEEEEE
T ss_pred CH-HHhHHHHHHHHhccC-CCC--ceEEEECCeEEEEEEEE
Confidence 57 678999999999994 422 23356899999888764
No 19
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=27.72 E-value=44 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.4
Q ss_pred CccceEEcCEEEEEEEeC
Q 033115 57 APTGLYLGGTKYMVIQGE 74 (127)
Q Consensus 57 ~~~Gi~l~G~KY~~~r~d 74 (127)
..+-+.++|++|+++|.+
T Consensus 71 ~Gtevk~dg~ey~i~re~ 88 (95)
T 3nx6_A 71 AGSSYKSEGVEYKVLRED 88 (95)
T ss_dssp CSEEEEETTEEEEEEEGG
T ss_pred CCeEEEECCEEEEEEEHH
Confidence 356699999999999987
No 20
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=26.46 E-value=38 Score=21.89 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=15.5
Q ss_pred CccceEEcCEEEEEEEeC
Q 033115 57 APTGLYLGGTKYMVIQGE 74 (127)
Q Consensus 57 ~~~Gi~l~G~KY~~~r~d 74 (127)
..+-+.++|++|+++|.+
T Consensus 74 ~Gtevk~dgeey~i~re~ 91 (99)
T 1p3h_A 74 GGTEIKYNGEEYLILSAR 91 (99)
T ss_dssp TCEEEEETTEEEEEEEGG
T ss_pred CCeEEEECCEEEEEEEhH
Confidence 356699999999999987
No 21
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=26.32 E-value=1.7e+02 Score=22.00 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeC
Q 033115 34 RFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGE 74 (127)
Q Consensus 34 ~f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d 74 (127)
+| +-+.+|+..++++|.+|-. ..=..++|+++.+.++.
T Consensus 209 dw-~~~a~~i~~~iRa~~~p~P--ga~~~~~g~~~ki~~a~ 246 (305)
T 2bln_A 209 EW-HKPASVLHNMVRAVADPWP--GAFSYVGNQKFTVWSSR 246 (305)
T ss_dssp CT-TSBHHHHHHHHHHTCTTSC--CEEEEETTEEEEEEEEE
T ss_pred CC-cCCHHHHHHHHhccCCCCC--ceEEEECCEEEEEEEEE
Confidence 67 6789999999999976622 22246789999887763
No 22
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=26.26 E-value=20 Score=28.22 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=23.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHhCC
Q 033115 98 IIGIYDEPMTPGQCNMIVERLGDYLIDQG 126 (127)
Q Consensus 98 VIg~y~~~~~~g~~~~~ve~lAdyL~~~G 126 (127)
|||+|.+...-.+...+.+.-|+.|+++|
T Consensus 333 IiG~YrG~~~N~eLf~AA~~YA~~Lkenn 361 (391)
T 2wj8_A 333 IMGEYRGTPRNQDLYDAAKAYAEQLKENG 361 (391)
T ss_dssp CCSSCCCCCSCHHHHHHHHHHHHHHTTCC
T ss_pred eeeeccCCCCChHHHHHHHHHHHHHHhcC
Confidence 57888887777778888888888888876
No 23
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=25.40 E-value=1.2e+02 Score=18.36 Aligned_cols=64 Identities=9% Similarity=0.138 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeCCCcEEEeecCCCcEEEEeCCcEEEEEEeCCCCCcchHHHHHH
Q 033115 37 LLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVE 116 (127)
Q Consensus 37 ~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d~~~~i~~kkg~~G~~i~KT~~aiVIg~y~~~~~~g~~~~~ve 116 (127)
..+|+-++.|-..|+=...+ .+|+++|.|+ .+++=++-.-.......+....++
T Consensus 13 ~a~~~~i~Eler~~rine~V---------lR~l~vr~d~-----------------~r~YE~m~Il~P~l~ee~~~~~ve 66 (77)
T 3zzp_A 13 EMPEDRVNDLARELRIRDNV---------RRVMVVASTT-----------------PGRYEVNIVLNPNLDQSQLQNEKE 66 (77)
T ss_dssp ECCHHHHHHHHHHHHTSTTE---------EEEEEEECSS-----------------TTEEEEEEEECTTCCHHHHHHHHH
T ss_pred EeCHhHHHHHHHHhCCCHHH---------HHHHHHhccC-----------------CCceEEEEEECCCCCHHHHHHHHH
Confidence 44566566665555322222 4789999883 233333333445567778999999
Q ss_pred HHHHHHHhCC
Q 033115 117 RLGDYLIDQG 126 (127)
Q Consensus 117 ~lAdyL~~~G 126 (127)
++-+.|.++|
T Consensus 67 k~~~~i~~~G 76 (77)
T 3zzp_A 67 IIQRALENYG 76 (77)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999998865
No 24
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=25.37 E-value=2.1e+02 Score=21.82 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeCCCcEEEeecCCCcEEEEeCCcEEEEEEeCC
Q 033115 34 RFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDE 104 (127)
Q Consensus 34 ~f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d~~~~i~~kkg~~G~~i~KT~~aiVIg~y~~ 104 (127)
+| +-+.+|+..++.+|+ |- ...=..++|+++.+.++..... ...+.-|-++...+..++|+..++
T Consensus 219 dw-~~~a~~I~~~iRa~~-P~--Pga~~~~~g~~~ki~~a~~~~~--~~~~~pG~i~~~~~~~~~V~~~dg 283 (318)
T 3q0i_A 219 NW-SDAATHIERCIRAFN-PW--PMSHFEVAENSIKVWQARVETR--AVTQTPGTIIQADKSGIYVATGQD 283 (318)
T ss_dssp CT-TSBHHHHHHHHHHTT-TT--TCCEEEETTEEEEEEEEEEECC--CCCSCTTBEEEEETTEEEEECSBS
T ss_pred cc-CCCHHHHHHHHhccC-CC--CceEEEECCEEEEEEEEEEecC--CCCCCCcEEEEEcCCEEEEEECCc
Confidence 57 778999999999995 42 2233578999998887641000 001233444444455555555444
No 25
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=24.87 E-value=1.3e+02 Score=19.42 Aligned_cols=21 Identities=5% Similarity=0.254 Sum_probs=18.1
Q ss_pred CcchHHHHHHHHHHHHHhCCC
Q 033115 107 TPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 107 ~~g~~~~~ve~lAdyL~~~Gy 127 (127)
.-++..+.++..++-.++.||
T Consensus 85 ~~~~~K~~i~ei~kkykd~Gy 105 (111)
T 2jmk_A 85 IDENMKKVIKATAEKFKNKGF 105 (111)
T ss_dssp CCTTHHHHHHHHHHHGGGGCC
T ss_pred hhhhHHHHHHHHHHHhhcCCc
Confidence 456889999999999999987
No 26
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.87 E-value=56 Score=20.72 Aligned_cols=20 Identities=20% Similarity=0.665 Sum_probs=17.5
Q ss_pred CcchHHHHHHHHHHHHHhCC
Q 033115 107 TPGQCNMIVERLGDYLIDQG 126 (127)
Q Consensus 107 ~~g~~~~~ve~lAdyL~~~G 126 (127)
.|.+....++++|+|..++|
T Consensus 20 PPpdir~iIdktA~fVaknG 39 (90)
T 2e5z_A 20 PPPDVQPVIDKLAEYVARNG 39 (90)
T ss_dssp CCTTTHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHcc
Confidence 35678999999999999988
No 27
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=24.65 E-value=55 Score=21.00 Aligned_cols=18 Identities=0% Similarity=0.106 Sum_probs=15.5
Q ss_pred CccceEEcCEEEEEEEeC
Q 033115 57 APTGLYLGGTKYMVIQGE 74 (127)
Q Consensus 57 ~~~Gi~l~G~KY~~~r~d 74 (127)
..+-+.++|++|+++|.+
T Consensus 72 ~Gtevk~dgeey~i~re~ 89 (97)
T 1pcq_O 72 GVKSEKIDNEEVLIMSES 89 (97)
T ss_dssp SCEEEEETTEEEEEEEGG
T ss_pred CCeEEEECCEEEEEEEhH
Confidence 356699999999999987
No 28
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=23.69 E-value=2e+02 Score=21.84 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCccceEEcCEEEEEEEeCCCcEEEeecCCCcEEEEeCCcEEEEEEeCC
Q 033115 34 RFFLLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDE 104 (127)
Q Consensus 34 ~f~~l~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~~r~d~~~~i~~kkg~~G~~i~KT~~aiVIg~y~~ 104 (127)
+| +-+.+|+..++++|+ |- ...=..++|+++.+.++..... ...+.-|-++...+..++|+..++
T Consensus 214 dw-~~~a~~I~~~iRa~~-P~--Pga~~~~~g~~~ki~~a~~~~~--~~~~~pG~v~~~~~~~l~V~~~dg 278 (314)
T 3tqq_A 214 DW-RKSAVEIARQVRAFN-PT--PIAFTYFEGQPMRIWRATVVDE--KTDFEPGVLVDADKKGISIAAGSG 278 (314)
T ss_dssp CT-TSBHHHHHHHHHHTT-TT--TCCEEEETTEEEEEEEEEEECC--CCSSCTTCEEEEETTEEEEECSBS
T ss_pred cc-cCCHHHHHHHHhccC-CC--CceEEEECCEEEEEEEEEEecC--CCCCCCcEEEEecCCEEEEEECCC
Confidence 57 778999999999996 32 2233678999998887641000 011233444444445555554443
No 29
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=23.68 E-value=80 Score=24.71 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=24.4
Q ss_pred EEEEcCCCCEEEe------------cCCCCCCCHHHHHHHHHhc
Q 033115 19 SATTAAFGPRVKT------------SLRFFLLKPEEITGIMNDF 50 (127)
Q Consensus 19 aAI~g~dG~vWA~------------s~~f~~l~~~E~~~i~~~f 50 (127)
-|+|+.||++|-- ...| .++|+|+..++...
T Consensus 42 ~AVFD~DgTl~~~D~~e~~~~yql~~~~~-~~~p~~~~~v~~~~ 84 (385)
T 4gxt_A 42 FAVFDWDNTSIIGDVEEALLYYMVRNVSF-KMDPEEFYELIRKN 84 (385)
T ss_dssp EEEECCTTTTEESCHHHHHHHHHHHHTCC-CCCHHHHHHHHHTT
T ss_pred EEEEcCCCCeecccccccHHHHHHHhhhc-cCCHHHHHHHHHhc
Confidence 5899999999952 1246 88999999988653
No 30
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=23.34 E-value=81 Score=21.72 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHHHhCCC
Q 033115 109 GQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 109 g~~~~~ve~lAdyL~~~Gy 127 (127)
.+..++..++-++|+++||
T Consensus 159 ~~t~~al~~ii~~l~~~Gy 177 (195)
T 2cc0_A 159 ANTLAAIPRIAQTLAGKGL 177 (195)
T ss_dssp HHHHHHHHHHHHHHHHTTE
T ss_pred hhHHHHHHHHHHHHHHCCC
Confidence 4567899999999999997
No 31
>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed residue, thiocoraline, protein binding, peptide binding Pro; 2.15A {Micromonospora SP}
Probab=22.12 E-value=64 Score=20.10 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=13.9
Q ss_pred eEEEEcCCCCEEEecCCCCCCCHHHHHHHH
Q 033115 18 SSATTAAFGPRVKTSLRFFLLKPEEITGIM 47 (127)
Q Consensus 18 ~aAI~g~dG~vWA~s~~f~~l~~~E~~~i~ 47 (127)
.+.+.+.||..|.-....+.++|+|.+..+
T Consensus 106 ~~~~~DPdG~~iel~~~~~~~~~~e~~~~~ 135 (137)
T 3itw_A 106 QYLVRDLEGHLWEFTRHLRDVPPREWGAVA 135 (137)
T ss_dssp EEEEECSSSCEEEEEECC------------
T ss_pred EEEEECCCCCEEEEEEEcCCCCHHHHhhhh
Confidence 356888899999876655567888887654
No 32
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=21.94 E-value=53 Score=18.88 Aligned_cols=17 Identities=6% Similarity=-0.136 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHhc
Q 033115 33 LRFFLLKPEEITGIMNDF 50 (127)
Q Consensus 33 ~~f~~l~~~E~~~i~~~f 50 (127)
|.| .|+++|++.|++.+
T Consensus 60 p~~-~Lsd~ei~~l~~yl 76 (80)
T 1ayg_A 60 PPQ-NVTDAEAKQLAQWI 76 (80)
T ss_dssp CCC-CCCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHH
Confidence 457 89999999998865
No 33
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=21.86 E-value=1.3e+02 Score=20.98 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 033115 94 SAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 127 (127)
Q Consensus 94 ~~aiVIg~y~~~~~~g~~~~~ve~lAdyL~~~Gy 127 (127)
..-++|.++. ..|++.+.++.+|+.|.+.|+
T Consensus 21 ~~kv~IvY~S---~tGnTe~~A~~ia~~l~~~g~ 51 (191)
T 1bvy_F 21 NTPLLVLYGS---NMGTAEGTARDLADIAMSKGF 51 (191)
T ss_dssp CCCEEEEEEC---SSSHHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEEEC---CChHHHHHHHHHHHHHHhCCC
Confidence 3345565655 568999999999999987663
No 34
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=21.58 E-value=41 Score=21.74 Aligned_cols=18 Identities=17% Similarity=0.490 Sum_probs=15.3
Q ss_pred CccceEEcCEEEEEEEeC
Q 033115 57 APTGLYLGGTKYMVIQGE 74 (127)
Q Consensus 57 ~~~Gi~l~G~KY~~~r~d 74 (127)
..+-+.++|++|+++|.+
T Consensus 76 ~Gtevk~dgeeyli~re~ 93 (100)
T 1we3_O 76 GGTEIEIDGEEYVILSER 93 (100)
T ss_dssp CSEEEECSSCEEEEECTT
T ss_pred CCeEEEECCEEEEEEEhH
Confidence 356699999999999987
No 35
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=20.67 E-value=92 Score=18.85 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhCC
Q 033115 110 QCNMIVERLGDYLIDQG 126 (127)
Q Consensus 110 ~~~~~ve~lAdyL~~~G 126 (127)
.....++++|.|...+|
T Consensus 16 ~~~~iIdktA~fVaknG 32 (78)
T 1x4o_A 16 EAKNLAEKLARFIADGG 32 (78)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 78999999999999988
Done!