BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033118
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OEY|A Chain A, Crystal Structure Of Inha_t266e:nadh Complex
Length = 269
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 182 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 229
>pdb|3OF2|A Chain A, Crystal Structure Of Inha_t266d:nadh Complex
Length = 269
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 182 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 229
>pdb|2IE0|A Chain A, Crystal Structure Of Isoniazid-Resistant I21v
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh- Inh
Length = 268
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 181 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 228
>pdb|2AQH|A Chain A, Crystal Structure Of Isoniazid-Resistant I21v
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh
Length = 269
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 182 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 229
>pdb|2AQI|A Chain A, Crystal Structure Of Isoniazid-Resistant I47t
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh
Length = 269
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 182 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 229
>pdb|2NV6|A Chain A, Mycobacterium Tuberculosis Inha (S94a) Bound With Inh-Nad
Adduct
pdb|1ENZ|A Chain A, Crystal Structure And Function Of The Isoniazid Target Of
Mycobacterium Tuberculosis
Length = 268
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 181 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 228
>pdb|2IEB|A Chain A, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh- Inh
pdb|2IED|A Chain A, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
pdb|2IED|B Chain B, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
pdb|2IED|C Chain C, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
pdb|2IED|D Chain D, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
Length = 268
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 181 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 228
>pdb|1BVR|A Chain A, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|B Chain B, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|C Chain C, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|D Chain D, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|E Chain E, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|F Chain F, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|2IDZ|A Chain A, Crystal Structure Of Wild Type Enoyl-Acp(Coa) Reductase
From Mycobacterium Tuberculosis In Complex With Nadh-Inh
Length = 268
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 181 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 228
>pdb|1P44|A Chain A, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|B Chain B, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|C Chain C, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|D Chain D, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|E Chain E, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|F Chain F, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P45|A Chain A, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P45|B Chain B, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|2B35|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B36|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B37|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2AQ8|A Chain A, Crystal Structure Of Wild-type Of Enoyl-acp(coa) Reductase
From Mycobacterium Tuberculosis In Complex With Nadh.
pdb|2H7I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
1-Cyclohexyl-5-Oxo-N-Phenylpyrrolidine-3-Carboxamide
pdb|2H7L|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
N-(3-Bromophenyl)-1-Cyclohexyl-5-Oxopyrrolidine-3-
Carboxamide
pdb|2H7M|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
1-Cyclohexyl-N-(3,5-Dichlorophenyl)-5-Oxopyrrolidine-
3-Carboxamide
pdb|2H7N|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
N-(5-Chloro-2-Methylphenyl)-1-Cyclohexyl-5-
Oxopyrrolidine-3-Carboxamide
pdb|2H7P|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
N-(3-Chloro-2-Methylphenyl)-1-Cyclohexyl- 5-
Oxopyrrolidine-3-Carboxamide
pdb|2NSD|A Chain A, Enoyl Acyl Carrier Protein Reductase Inha In Complex With
N- (4-Methylbenzoyl)-4-Benzylpiperidine
pdb|2NSD|B Chain B, Enoyl Acyl Carrier Protein Reductase Inha In Complex With
N- (4-Methylbenzoyl)-4-Benzylpiperidine
pdb|2PR2|A Chain A, Structure Of Mycobacterium Tuberculosis Enoyl-Acp
Reductase With Bound Inh-Nadp.
pdb|3FNE|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNE|B Chain B, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNE|C Chain C, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNE|D Chain D, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNF|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNF|B Chain B, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNF|C Chain C, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNF|D Chain D, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNG|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNH|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|2X22|A Chain A, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X22|B Chain B, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|A Chain A, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|B Chain B, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|E Chain E, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|G Chain G, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|3OEW|A Chain A, Crystal Structure Of Wild-Type Inha:nadh Complex
pdb|4DRE|A Chain A, Mycobacterium Tuberculosis Inha In Complex With Nadh
Length = 269
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 182 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 229
>pdb|2AQK|A Chain A, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh
pdb|4DTI|A Chain A, Mycobacterium Tuberculosis Inha-S94a Mutant In Complex
With Nadh
Length = 269
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 182 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 229
>pdb|2H9I|A Chain A, Mycobacterium Tuberculosis Inha Bound With Eth-Nad Adduct
pdb|2NTJ|A Chain A, Mycobacterium Tuberculosis Inha Bound With Pth-Nad Adduct
pdb|2NTJ|B Chain B, Mycobacterium Tuberculosis Inha Bound With Pth-Nad Adduct
pdb|1ENY|A Chain A, Crystal Structure And Function Of The Isoniazid Target Of
Mycobacterium Tuberculosis
pdb|1ZID|A Chain A, Long Fatty Acid Chain Enoyl-Acp Reductase (Inha) In
Complex With An Isonicotinic-Acyl-Nadh Inhibitor
Length = 268
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 181 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 228
>pdb|4DQU|A Chain A, Mycobacterium Tuberculosis Inha-D148g Mutant In Complex
With Nadh
Length = 269
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHG 55
+G R+N + + LA+ +G AQI++L W Q+ P G
Sbjct: 182 YGVRSNLVAAGPIRTLAMSAIVGGALGE----EAGAQIQLLEEGWDQRAPIG 229
>pdb|3LB6|A Chain A, The Structure Of Il-13 In Complex With Il-13ralpha2
Length = 132
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 17 TILALMCTIGSLSDNLNTPSPSAQI---EILNINWFQKQPHGNDEVSLTLNITADL 69
T++AL C G S PS + + E++NI QK P N + ++N+TA +
Sbjct: 7 TVIALTCLGGFASPGPVPPSTALRELIEELVNITQNQKAPLCNGSMVWSINLTAGM 62
>pdb|3LB6|B Chain B, The Structure Of Il-13 In Complex With Il-13ralpha2
Length = 132
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 17 TILALMCTIGSLSDNLNTPSPSAQI---EILNINWFQKQPHGNDEVSLTLNITADL 69
T++AL C G S PS + + E++NI QK P N + ++N+TA +
Sbjct: 7 TVIALTCLGGFASPGPVPPSTALRELIEELVNITQNQKAPLCNGSMVWSINLTAGM 62
>pdb|3ESU|F Chain F, Crystal Structure Of Anthrax-Neutralizing Single-Chain
Antibody 14b7
Length = 250
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 27 SLSDNLNTPSPSAQIEILN-INWFQKQPHGNDEVSLTLNITADLQS 71
SL D + T S A +I N +NW+Q++P G V L + T+ LQS
Sbjct: 17 SLGDRV-TISCRASQDIRNYLNWYQQKPDGT--VKLLIYYTSRLQS 59
>pdb|4ACZ|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Thetaiotaomicron
pdb|4AD0|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteriodes Thetaiotaomicron In Complex With
Bis-Tris-Propane
pdb|4AD0|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteriodes Thetaiotaomicron In Complex With
Bis-Tris-Propane
pdb|4AD0|C Chain C, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteriodes Thetaiotaomicron In Complex With
Bis-Tris-Propane
pdb|4AD0|D Chain D, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteriodes Thetaiotaomicron In Complex With
Bis-Tris-Propane
Length = 382
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 39 AQIEILNINWFQKQPHGNDEVSLTLNITADL 69
A + +L++ W+ + +GN VSL L+ A +
Sbjct: 115 ANVGVLSVTWWGESDYGNQSVSLLLDEAAKV 145
>pdb|4ACZ|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Thetaiotaomicron
Length = 382
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 39 AQIEILNINWFQKQPHGNDEVSLTLNITADL 69
A + +L++ W+ + +GN VSL L+ A +
Sbjct: 115 ANVGVLSVTWWGESDYGNQSVSLLLDEAAKV 145
>pdb|4ACY|A Chain A, Selenomethionine Derivative Of The Gh99 Endo-Alpha-
Mannosidase From Bacteroides Thetaiotaomicron
pdb|4ACY|B Chain B, Selenomethionine Derivative Of The Gh99 Endo-Alpha-
Mannosidase From Bacteroides Thetaiotaomicron
Length = 382
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 39 AQIEILNINWFQKQPHGNDEVSLTLNITADL 69
A + +L++ W+ + +GN VSL L+ A +
Sbjct: 115 ANVGVLSVTWWGESDYGNQSVSLLLDEAAKV 145
>pdb|3U0W|L Chain L, Ad Related Murine Antibody Fragment
Length = 214
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 27 SLSDNLNTPSPSAQIEILN-INWFQKQPHGNDEVSLTLNITADLQS 71
SL D + T S SA I N +NWFQ++P G V L + T+ L S
Sbjct: 14 SLGDRV-TISCSASQGISNYLNWFQQKPDGT--VKLLIYYTSSLHS 56
>pdb|1FBI|L Chain L, Crystal Structure Of A Cross-Reaction Complex Between
Fab F9.13.7 And Guinea-Fowl Lysozyme
pdb|1FBI|P Chain P, Crystal Structure Of A Cross-Reaction Complex Between
Fab F9.13.7 And Guinea-Fowl Lysozyme
Length = 214
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 27 SLSDNLNTPSPSAQIEILN-INWFQKQPHGNDEVSLTLNITADLQS 71
SL D + T S A +I N +NW+QK+P G V L + T+ L S
Sbjct: 14 SLGDRV-TISCRASQDISNYLNWYQKKPDGT--VKLLIYYTSRLHS 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,481,210
Number of Sequences: 62578
Number of extensions: 118387
Number of successful extensions: 246
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 35
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)