Query 033118
Match_columns 127
No_of_seqs 109 out of 225
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 10:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00116 signal peptidase; Pro 100.0 3.7E-51 8E-56 311.0 14.5 127 1-127 1-131 (185)
2 PF04573 SPC22: Signal peptida 100.0 1.2E-50 2.7E-55 307.1 14.3 127 1-127 1-133 (175)
3 KOG3372 Signal peptidase compl 100.0 4.5E-49 9.7E-54 294.9 11.8 127 1-127 1-133 (176)
4 PLN03160 uncharacterized prote 68.7 13 0.00027 29.0 5.0 22 29-50 59-80 (219)
5 PRK13884 conjugal transfer pep 53.3 72 0.0016 24.0 6.6 60 1-62 1-60 (178)
6 PRK13838 conjugal transfer pil 45.4 1.3E+02 0.0027 22.7 6.9 56 7-62 5-60 (176)
7 KOG2111 Uncharacterized conser 43.2 21 0.00046 30.0 2.5 25 81-105 60-84 (346)
8 PF12751 Vac7: Vacuolar segreg 41.0 84 0.0018 27.0 5.8 44 4-49 298-341 (387)
9 PF12911 OppC_N: N-terminal TM 41.0 60 0.0013 19.2 3.7 29 9-37 15-43 (56)
10 PF14713 DUF4464: Domain of un 31.6 39 0.00084 27.0 2.2 14 96-109 220-233 (233)
11 PF12984 DUF3868: Domain of un 31.5 1.2E+02 0.0025 21.3 4.5 14 57-72 42-55 (115)
12 PF07423 DUF1510: Protein of u 30.8 72 0.0016 25.2 3.6 27 6-32 10-36 (217)
13 PRK15221 Saf-pilin pilus forma 23.2 2.4E+02 0.0053 21.4 5.1 22 16-37 10-31 (165)
No 1
>PTZ00116 signal peptidase; Provisional
Probab=100.00 E-value=3.7e-51 Score=310.98 Aligned_cols=127 Identities=28% Similarity=0.387 Sum_probs=120.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCceEEEEEEeeeccC-CCCCcceEEEEEEecCCCcceeeccc
Q 033118 1 MHSFGYRANALLTFAVTILALMCTIGSLSDNLN--TPSPSAQIEILNINWFQK-QPHGNDEVSLTLNITADLQSLFTWNT 77 (127)
Q Consensus 1 M~s~~~R~n~v~~~~~~~l~~l~~~~~lss~~~--~~~p~~~v~~~~v~~~~~-~~~~~d~a~i~Fdl~aDls~lFnWNT 77 (127)
|||+++|+|++++|+++++++||++|++++.+. +.+|++++++.+|.+++. +++++|+|.++|||++||+|+|||||
T Consensus 1 MhS~~~R~Nal~~f~~~vLa~l~~~~~~s~~f~~~~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNt 80 (185)
T PTZ00116 1 MDNVLNRLNVLSYSMALCFLILCLFNYGTSFYLFDEKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNL 80 (185)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccc
Confidence 999999999999999999999999999999987 667778999999999984 56799999999999999999999999
Q ss_pred eeEEEEEEEEEeCCCCCceeEEEeeccccCcccccccc-cCcceeeeeeCC
Q 033118 78 KQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQV 127 (127)
Q Consensus 78 KQvFvYl~AeY~t~~~~~nqvviWDkII~~k~~a~l~~-~~~~KY~~~D~~ 127 (127)
|||||||+|||+|++++.|||+|||+||++|++|++.. ++++||+|||++
T Consensus 81 KqlFvyv~a~Y~t~~~~~n~v~iWD~Ii~~k~~A~l~~~~~~~KY~l~D~~ 131 (185)
T PTZ00116 81 KQLFLYVLVTYETPEKVKNEVIIQDYIITNKKQAKKTYKNFITKYSLKDYN 131 (185)
T ss_pred cEEEEEEEEEEcCCCCccccEEEEeeeecCcccceEeecccccceeEEeCC
Confidence 99999999999999999999999999999999999977 999999999986
No 2
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=100.00 E-value=1.2e-50 Score=307.09 Aligned_cols=127 Identities=43% Similarity=0.708 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEE-----EeeeccCCCCCcceEEEEEEecCCCcceeec
Q 033118 1 MHSFGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEIL-----NINWFQKQPHGNDEVSLTLNITADLQSLFTW 75 (127)
Q Consensus 1 M~s~~~R~n~v~~~~~~~l~~l~~~~~lss~~~~~~p~~~v~~~-----~v~~~~~~~~~~d~a~i~Fdl~aDls~lFnW 75 (127)
|||+++|+|++++++++++++++++|++++++++++|++++++. +.+.++..++++|+|.++|||+|||+|+|||
T Consensus 1 Mhs~~~R~N~vfs~~~~vl~~l~~~~~~s~~~~~~~~~~~i~v~~~~v~~~~~~~~~~~~~D~a~i~fdl~aDls~lfnW 80 (175)
T PF04573_consen 1 MHSFLSRLNAVFSFALTVLAFLAALIFLSSYFHPPSPSVSISVSNVQVRKSRDYGYSGKKKDYAKITFDLDADLSPLFNW 80 (175)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEEEecccccCCCCCceEEEEEEEeccCcccceee
Confidence 99999999999999999999999999999999999999887665 5666665567899999999999999999999
Q ss_pred cceeEEEEEEEEEeCCCCCceeEEEeeccccCcccccccc-cCcceeeeeeCC
Q 033118 76 NTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSI-HTSNKYRFIDQV 127 (127)
Q Consensus 76 NTKQvFvYl~AeY~t~~~~~nqvviWDkII~~k~~a~l~~-~~~~KY~~~D~~ 127 (127)
||||+||||+|||+|++++.||||||||||++||+|++.+ ++++||+|+|++
T Consensus 81 NtKq~Fvyv~A~Y~t~~~~~NevviWD~Ii~~~~~a~~~~~~~~~KY~~~d~~ 133 (175)
T PF04573_consen 81 NTKQLFVYVTAEYETPKNPVNEVVIWDKIIRRKEDAVLNLKNVKSKYPFWDDG 133 (175)
T ss_pred eeeEEEEEEEEEECCCCCCcceEEEehHhhcccchhhhhhhccccceeeECCC
Confidence 9999999999999999999999999999999999999977 899999999985
No 3
>KOG3372 consensus Signal peptidase complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-49 Score=294.94 Aligned_cols=127 Identities=45% Similarity=0.738 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-----CCCceEEEEEEeeeccCCCCCcceEEEEEEecCCCcceeec
Q 033118 1 MHSFGYRANALLTFAVTILALMCTIGSLSDNLNT-----PSPSAQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTW 75 (127)
Q Consensus 1 M~s~~~R~n~v~~~~~~~l~~l~~~~~lss~~~~-----~~p~~~v~~~~v~~~~~~~~~~d~a~i~Fdl~aDls~lFnW 75 (127)
|||+.+|+|++++|++++++++|+.|++++.|.+ +.|...+++.++..|+.++++.|.+.++|||+|||+++|||
T Consensus 1 M~tf~~R~nal~sf~~svlafl~a~~f~s~vf~~~~~~~~~~~~~i~irn~~~y~~~r~~~d~~~v~Fdl~aDLs~lF~W 80 (176)
T KOG3372|consen 1 MHTFGSRANALFSFTLSVLAFLCAACFLSTVFLNREVDTQNPVSRIKIRNVRDYGAQREKADEAFVTFDLSADLSSLFNW 80 (176)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcceeEEEeehhhhccccccCceeEEEeecccChHhhcCc
Confidence 9999999999999999999999999999999987 45667899999999999999999999999999999999999
Q ss_pred cceeEEEEEEEEEeCCCCCceeEEEeeccccCccccccc-ccCcceeeeeeCC
Q 033118 76 NTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFS-IHTSNKYRFIDQV 127 (127)
Q Consensus 76 NTKQvFvYl~AeY~t~~~~~nqvviWDkII~~k~~a~l~-~~~~~KY~~~D~~ 127 (127)
|||||||||+|||+|++|..|||++|||||.++|++++. +++++||.++|||
T Consensus 81 NtKQvFvYl~AeY~t~~n~~nQVvlWDkII~~~d~~~l~~~~~~sky~f~D~g 133 (176)
T KOG3372|consen 81 NTKQVFVYLVAEYSTKKNELNQVVLWDKIILRKDNAVLDGKDMSSKYYFFDDG 133 (176)
T ss_pred ccceEEEEEEEEecCccccccceEEhhhhhcCcchhhhhhhccccceeEEecC
Confidence 999999999999999999999999999999999999985 5999999999996
No 4
>PLN03160 uncharacterized protein; Provisional
Probab=68.65 E-value=13 Score=29.04 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=14.3
Q ss_pred hhccCCCCCceEEEEEEeeecc
Q 033118 29 SDNLNTPSPSAQIEILNINWFQ 50 (127)
Q Consensus 29 ss~~~~~~p~~~v~~~~v~~~~ 50 (127)
...|.+..|...+.-.++.++.
T Consensus 59 ~~vfrPk~P~~~v~~v~l~~~~ 80 (219)
T PLN03160 59 FTVFRVKDPVIKMNGVTVTKLE 80 (219)
T ss_pred eEEEEccCCeEEEEEEEEeeee
Confidence 4556677888777655565654
No 5
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=53.27 E-value=72 Score=24.02 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEEEeeeccCCCCCcceEEEE
Q 033118 1 MHSFGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLT 62 (127)
Q Consensus 1 M~s~~~R~n~v~~~~~~~l~~l~~~~~lss~~~~~~p~~~v~~~~v~~~~~~~~~~d~a~i~ 62 (127)
|.....|+...+.++...+++++++.+...+..+.+++.-+.+-.+. ....++.|.+.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~T~S~P~glY~~~--~~~~~~Gd~V~f~ 60 (178)
T PRK13884 1 MSRILKRITAGVAVAGLAALLLAALGYAAGARVNTTKSIPVGLYWTS--SAPVEKGAYVLFC 60 (178)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEEECCCCCcceEEEEe--CCCCCCCCEEEEe
Confidence 44456677777776666666666666666676777777655443332 2234556666654
No 6
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=45.44 E-value=1.3e+02 Score=22.69 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEEEeeeccCCCCCcceEEEE
Q 033118 7 RANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLT 62 (127)
Q Consensus 7 R~n~v~~~~~~~l~~l~~~~~lss~~~~~~p~~~v~~~~v~~~~~~~~~~d~a~i~ 62 (127)
|+.-+..++...+++++.+.+.-.+..+.+++.-+-+-.+....+.+++.|.+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~T~S~pig~y~~~~~~~~~~rGDiVvf~ 60 (176)
T PRK13838 5 RALLLLAVAAVAASGLAATAWIGGYRINLTPSEPLGLWRIEALDRPVAVGDLVFIC 60 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCceEEECCCCCEEEEEEEeccCCCCCCCcEEEEE
Confidence 33334443333344444444445555677777766665554434445667777654
No 7
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=43.17 E-value=21 Score=30.04 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=19.5
Q ss_pred EEEEEEEEeCCCCCceeEEEeeccc
Q 033118 81 FIFVAAEYETPKNALNQVSLWDAII 105 (127)
Q Consensus 81 FvYl~AeY~t~~~~~nqvviWDkII 105 (127)
++-|+..+..++.+.|.|+|||..-
T Consensus 60 ~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 60 YLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eEEEecCCCCCCCCCceEEEEeccc
Confidence 4566777777788899999999653
No 8
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=41.03 E-value=84 Score=27.03 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceEEEEEEeeec
Q 033118 4 FGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWF 49 (127)
Q Consensus 4 ~~~R~n~v~~~~~~~l~~l~~~~~lss~~~~~~p~~~v~~~~v~~~ 49 (127)
++.|+-.+. .++++++|++.+++.-+|...+|=.++.|.+|...
T Consensus 298 ~~~r~~~c~--~~~i~~lL~ig~~~gFv~AttKpL~~v~v~~I~NV 341 (387)
T PF12751_consen 298 WFSRFASCI--YLSILLLLVIGFAIGFVFATTKPLTDVQVVSIQNV 341 (387)
T ss_pred HHhhhhHHH--HHHHHHHHHHHHHHHhhhhcCcccccceEEEeeee
Confidence 455554433 33333444433333333455677677777666544
No 9
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=40.97 E-value=60 Score=19.15 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 033118 9 NALLTFAVTILALMCTIGSLSDNLNTPSP 37 (127)
Q Consensus 9 n~v~~~~~~~l~~l~~~~~lss~~~~~~p 37 (127)
|-..-.++.+++++++++.+..++.+..|
T Consensus 15 nk~a~~gl~il~~~vl~ai~~p~~~p~~~ 43 (56)
T PF12911_consen 15 NKLAVIGLIILLILVLLAIFAPFISPYDP 43 (56)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 44444555555555555555555544433
No 10
>PF14713 DUF4464: Domain of unknown function (DUF4464)
Probab=31.62 E-value=39 Score=27.01 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=12.4
Q ss_pred eeEEEeeccccCcc
Q 033118 96 NQVSLWDAIIPAKE 109 (127)
Q Consensus 96 nqvviWDkII~~k~ 109 (127)
-||||+|.++++|.
T Consensus 220 ~~vv~yDH~vRrk~ 233 (233)
T PF14713_consen 220 GQVVLYDHVVRRKT 233 (233)
T ss_pred CEEEEEeeeeeecC
Confidence 78999999999873
No 11
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=31.46 E-value=1.2e+02 Score=21.26 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=6.4
Q ss_pred ceEEEEEEecCCCcce
Q 033118 57 DEVSLTLNITADLQSL 72 (127)
Q Consensus 57 d~a~i~Fdl~aDls~l 72 (127)
|...+.| +.||+++
T Consensus 42 d~L~V~m--~idl~~l 55 (115)
T PF12984_consen 42 DSLHVDM--DIDLSGL 55 (115)
T ss_pred CEEEEEE--EEEeccc
Confidence 4444444 4445543
No 12
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=30.82 E-value=72 Score=25.17 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 033118 6 YRANALLTFAVTILALMCTIGSLSDNL 32 (127)
Q Consensus 6 ~R~n~v~~~~~~~l~~l~~~~~lss~~ 32 (127)
.|.|-++..++.+.++|+++.+...+|
T Consensus 10 RK~N~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 10 RKTNKILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhee
Confidence 467899999988888777777666666
No 13
>PRK15221 Saf-pilin pilus formation protein SafA; Provisional
Probab=23.19 E-value=2.4e+02 Score=21.43 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCC
Q 033118 16 VTILALMCTIGSLSDNLNTPSP 37 (127)
Q Consensus 16 ~~~l~~l~~~~~lss~~~~~~p 37 (127)
-++|..+++.|+.-|++.+.+.
T Consensus 10 asalsmmaascyags~~pnt~~ 31 (165)
T PRK15221 10 ASALSMMAASCYAGSFLPNTEQ 31 (165)
T ss_pred HHHHHHHHHHhhhcccccCCcc
Confidence 3566777888888887755443
Done!