Query 033118
Match_columns 127
No_of_seqs 109 out of 225
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izx_A Structural protein VP3; 16.8 49 0.0017 30.4 1.4 13 71-83 209-221 (1058)
2 2lru_A Serine/threonine-protei 18.7 37 0.0013 22.7 0.0 23 50-72 39-61 (98)
3 1dqu_A Isocitrate lyase; beta 11.1 52 0.0018 28.2 -0.1 14 65-78 420-433 (538)
4 2kxg_A Aspartic protease inhib 9.6 2.3E+02 0.008 18.1 2.8 11 93-103 70-80 (95)
5 3kcw_A Immunomodulatory protei 9.6 2.1E+02 0.007 19.6 2.6 18 72-89 86-111 (134)
6 1osy_A Immunomodulatory protei 8.8 2.4E+02 0.0081 18.9 2.6 10 73-82 87-96 (115)
7 2iub_A CORA, divalent cation t 8.6 4.4E+02 0.015 20.3 4.6 30 4-33 295-324 (363)
8 2qjy_C Ubiquinol-cytochrome C 8.1 4E+02 0.014 18.9 3.8 13 72-84 64-76 (187)
9 3cx5_E Cytochrome B-C1 complex 7.7 5.5E+02 0.019 18.1 4.4 13 73-85 79-91 (185)
10 1q5l_A Chaperone protein DNAK; 7.5 3.3E+02 0.011 18.2 3.0 15 54-68 95-109 (135)
No 1
>3izx_A Structural protein VP3; cytoplasmic polyhedrosis virus, 3D reconstruction, cryoem, F model; 3.10A {Bombyx mori cypovirus 1} PDB: 3iz3_A 3j17_A* 3cnf_T
Probab=16.78 E-value=49 Score=30.40 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=11.7
Q ss_pred ceeeccceeEEEE
Q 033118 71 SLFTWNTKQLFIF 83 (127)
Q Consensus 71 ~lFnWNTKQvFvY 83 (127)
.-|+||+++.|+|
T Consensus 209 ~twh~n~~HtF~Y 221 (1058)
T 3izx_A 209 SSWHWNVLHTFHY 221 (1058)
T ss_dssp SSCGGGCCEEEEE
T ss_pred eeeecCCceEEEe
Confidence 4699999999997
No 2
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=18.69 E-value=37 Score=22.73 Aligned_cols=23 Identities=9% Similarity=0.315 Sum_probs=17.5
Q ss_pred cCCCCCcceEEEEEEecCCCcce
Q 033118 50 QKQPHGNDEVSLTLNITADLQSL 72 (127)
Q Consensus 50 ~~~~~~~d~a~i~Fdl~aDls~l 72 (127)
+++.+.++...|.|||+.|-..-
T Consensus 39 ~gk~KeNeaIeF~Fdle~Dta~e 61 (98)
T 2lru_A 39 KGKYKDNEAIEFSFDLERDVPED 61 (98)
Confidence 45566788899999999886543
No 3
>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP: c.1.12.7
Probab=11.11 E-value=52 Score=28.20 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=10.9
Q ss_pred ecCCCcceeeccce
Q 033118 65 ITADLQSLFTWNTK 78 (127)
Q Consensus 65 l~aDls~lFnWNTK 78 (127)
|-+++||.|||..+
T Consensus 420 LaYN~SPSFnW~~~ 433 (538)
T 1dqu_A 420 LAYNLSPSFNWKKA 433 (538)
T ss_dssp EEEECCSSSCGGGT
T ss_pred EEecCCcchhhhhh
Confidence 44568999999873
No 4
>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}
Probab=9.63 E-value=2.3e+02 Score=18.10 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=8.2
Q ss_pred CCceeEEEeec
Q 033118 93 NALNQVSLWDA 103 (127)
Q Consensus 93 ~~~nqvviWDk 103 (127)
...-+++||.+
T Consensus 70 ~~~y~a~Vw~k 80 (95)
T 2kxg_A 70 SKFYNVVVLEK 80 (95)
T ss_dssp CEEEEEEEEEE
T ss_pred ceEEEEEEEEc
Confidence 34568999987
No 5
>3kcw_A Immunomodulatory protein; FNIII, immune system; 2.00A {Ganoderma microsporum} PDB: 3f3h_A
Probab=9.62 E-value=2.1e+02 Score=19.58 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=12.6
Q ss_pred eeeccceeEEE--------EEEEEEe
Q 033118 72 LFTWNTKQLFI--------FVAAEYE 89 (127)
Q Consensus 72 lFnWNTKQvFv--------Yl~AeY~ 89 (127)
+-+=||-|||| |+.|+++
T Consensus 86 iADT~TIQV~VvdPdtgn~fiiAqWn 111 (134)
T 3kcw_A 86 IADTNTIQVYVIDPDTGNNFIVAQWN 111 (134)
T ss_dssp EETTSCEEEEEECTTTCCEEEEEEEC
T ss_pred cccCceEEEEEEcCCCCCceEeeehh
Confidence 33568999998 6666664
No 6
>1osy_A Immunomodulatory protein FIP-FVE; fungal protein, fibronectin fold, hemagglutination, lectin, sugar binding protein, immune system; 1.70A {Flammulina velutipes} SCOP: b.1.21.1
Probab=8.85 E-value=2.4e+02 Score=18.87 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=7.0
Q ss_pred eeccceeEEE
Q 033118 73 FTWNTKQLFI 82 (127)
Q Consensus 73 FnWNTKQvFv 82 (127)
-+=||-||||
T Consensus 87 ADT~TIQV~V 96 (115)
T 1osy_A 87 ADTKTIQVFV 96 (115)
T ss_dssp ETTSCEEEEE
T ss_pred cccceEEEEE
Confidence 3457888886
No 7
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=8.58 E-value=4.4e+02 Score=20.35 Aligned_cols=30 Identities=7% Similarity=0.187 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 033118 4 FGYRANALLTFAVTILALMCTIGSLSDNLN 33 (127)
Q Consensus 4 ~~~R~n~v~~~~~~~l~~l~~~~~lss~~~ 33 (127)
..+|.|.+.-..+.+.++++-+.++++++.
T Consensus 295 is~~~N~imk~LTiit~IflP~T~IaGiyG 324 (363)
T 2iub_A 295 VSNKTNEVMKVLTIIATIFMPLTFIAGIYG 324 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 457888888888777888888888888764
No 8
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=8.13 E-value=4e+02 Score=18.88 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=9.9
Q ss_pred eeeccceeEEEEE
Q 033118 72 LFTWNTKQLFIFV 84 (127)
Q Consensus 72 lFnWNTKQvFvYl 84 (127)
.|.|.-|.||++=
T Consensus 64 ~v~~~g~pv~i~r 76 (187)
T 2qjy_C 64 TVKFLGKPIFIRR 76 (187)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEECCEEEEEEE
Confidence 3568889988875
No 9
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=7.75 E-value=5.5e+02 Score=18.11 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=9.2
Q ss_pred eeccceeEEEEEE
Q 033118 73 FTWNTKQLFIFVA 85 (127)
Q Consensus 73 FnWNTKQvFvYl~ 85 (127)
+.|.-|.+|++=.
T Consensus 79 v~~~g~pv~v~r~ 91 (185)
T 3cx5_E 79 VKWQGKPVFIRHR 91 (185)
T ss_dssp EEETTEEEEEEEC
T ss_pred EEECCeEEEEEEC
Confidence 4588888888743
No 10
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=7.49 E-value=3.3e+02 Score=18.18 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=9.1
Q ss_pred CCcceEEEEEEecCC
Q 033118 54 HGNDEVSLTLNITAD 68 (127)
Q Consensus 54 ~~~d~a~i~Fdl~aD 68 (127)
++.....++|++|+|
T Consensus 95 ~G~~~IeVtf~iD~n 109 (135)
T 1q5l_A 95 RGMPQIEVTFDIDAD 109 (135)
T ss_dssp SSSCCEEEEEEECTT
T ss_pred CceeEEEEEEEECCC
Confidence 344456677777665
Done!