Query 033118
Match_columns 127
No_of_seqs 109 out of 225
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 16:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033118.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033118hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 11.4 1.2E+02 0.0089 16.2 4.0 27 7-33 1-27 (64)
2 d1l0qa2 b.69.2.3 (A:1-301) Sur 9.7 78 0.0057 20.0 2.3 16 81-102 3-18 (301)
3 d1ppjj_ f.23.14.1 (J:) Subunit 9.2 8.7 0.00063 19.6 -2.3 19 100-122 13-31 (33)
4 d3ci0k3 d.24.1.6 (K:29-93,K:27 8.6 38 0.0028 21.0 0.2 20 57-77 53-72 (106)
5 d1dqua_ c.1.12.7 (A:) Isocitra 7.5 41 0.003 26.7 -0.1 10 67-76 421-430 (519)
6 d1vjea_ d.185.1.2 (A:) Autoind 7.2 3E+02 0.022 17.8 4.4 34 77-112 10-43 (149)
7 d2hfqa1 d.375.1.1 (A:1-85) Hyp 7.1 98 0.0072 18.5 1.7 19 97-115 2-20 (85)
8 d1dwka2 d.72.1.1 (A:87-156) Cy 5.8 1.6E+02 0.012 16.8 2.1 14 53-66 50-63 (70)
9 d1xhoa_ d.79.1.2 (A:) Chorisma 5.8 1.8E+02 0.013 18.0 2.5 20 54-73 36-55 (112)
10 d1dkza2 b.130.1.1 (A:389-506) 5.8 2.6E+02 0.019 16.8 3.4 24 45-68 70-93 (118)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=11.44 E-value=1.2e+02 Score=16.23 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC
Q 033118 7 RANALLTFAVTILALMCTIGSLSDNLN 33 (127)
Q Consensus 7 R~n~v~~~~~~~l~~l~~~~~lss~~~ 33 (127)
|.|.+.-....+.++.+-+.++++.+.
T Consensus 1 r~N~~mk~lT~it~iflP~t~i~gifG 27 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLTFIAGIYG 27 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 667777776666677777777888774
No 2
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=9.74 E-value=78 Score=19.98 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=10.3
Q ss_pred EEEEEEEEeCCCCCceeEEEee
Q 033118 81 FIFVAAEYETPKNALNQVSLWD 102 (127)
Q Consensus 81 FvYl~AeY~t~~~~~nqvviWD 102 (127)
|+|++..- .+.|.+||
T Consensus 3 ~~yV~~~~------~~~v~v~D 18 (301)
T d1l0qa2 3 FAYIANSE------SDNISVID 18 (301)
T ss_dssp EEEEEETT------TTEEEEEE
T ss_pred EEEEEECC------CCEEEEEE
Confidence 77775321 25688888
No 3
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.21 E-value=8.7 Score=19.57 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=12.3
Q ss_pred EeeccccCcccccccccCcceee
Q 033118 100 LWDAIIPAKEFAKFSIHTSNKYR 122 (127)
Q Consensus 100 iWDkII~~k~~a~l~~~~~~KY~ 122 (127)
|||.|= +.+++++++.||-
T Consensus 13 i~d~~N----kGklWKdIkhkYe 31 (33)
T d1ppjj_ 13 IYEHIN----EGKLWKHIKHKYE 31 (33)
T ss_dssp HHHHHT----TTTSHHHHGGGTC
T ss_pred HHHHhc----ccchHHHHHHHhc
Confidence 455553 3567888888883
No 4
>d3ci0k3 d.24.1.6 (K:29-93,K:275-315) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=8.55 E-value=38 Score=20.99 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=14.7
Q ss_pred ceEEEEEEecCCCcceeeccc
Q 033118 57 DEVSLTLNITADLQSLFTWNT 77 (127)
Q Consensus 57 d~a~i~Fdl~aDls~lFnWNT 77 (127)
|.+.|+-.+ .|+..+||.|.
T Consensus 53 d~G~i~g~I-~D~q~cFNLN~ 72 (106)
T d3ci0k3 53 PQGQIAVTL-RDAQSNYFWLR 72 (106)
T ss_dssp TTEEEEEEE-EETTCSEEEEE
T ss_pred CCcEEEEEE-EeCCcccchhh
Confidence 445566665 39999999994
No 5
>d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans [TaxId: 162425]}
Probab=7.53 E-value=41 Score=26.72 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=8.3
Q ss_pred CCCcceeecc
Q 033118 67 ADLQSLFTWN 76 (127)
Q Consensus 67 aDls~lFnWN 76 (127)
+++||-|||.
T Consensus 421 YN~SPSFNW~ 430 (519)
T d1dqua_ 421 YNLSPSFNWK 430 (519)
T ss_dssp EECCSSSCGG
T ss_pred ecCCCCcchh
Confidence 4589999995
No 6
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.23 E-value=3e+02 Score=17.81 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=26.4
Q ss_pred ceeEEEEEEEEEeCCCCCceeEEEeeccccCccccc
Q 033118 77 TKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAK 112 (127)
Q Consensus 77 TKQvFvYl~AeY~t~~~~~nqvviWDkII~~k~~a~ 112 (127)
.|.-|||+.-.+.++++ .+|+-||=-...+....
T Consensus 10 v~aP~Vr~~~~~~~~~g--d~It~fDlR~~qPN~~~ 43 (149)
T d1vjea_ 10 VKAPYVRLAGVKTTPKG--DQISKYDLRFLQPNQGA 43 (149)
T ss_dssp CCSSEEEEEEEEECTTS--CEEEEEEEECSCTTSCC
T ss_pred ccCCeEEEeeeEecCCC--CEEEEEEEeecCCCccc
Confidence 34459999999999876 56999998887776443
No 7
>d2hfqa1 d.375.1.1 (A:1-85) Hypothetical protein NE1680 {Nitrosomonas europaea [TaxId: 915]}
Probab=7.15 E-value=98 Score=18.48 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=13.9
Q ss_pred eEEEeeccccCcccccccc
Q 033118 97 QVSLWDAIIPAKEFAKFSI 115 (127)
Q Consensus 97 qvviWDkII~~k~~a~l~~ 115 (127)
||-+||+-+++++-..++.
T Consensus 2 ~i~VyDTyV~~~~G~~mHF 20 (85)
T d2hfqa1 2 QIHVYDTYVKAKDGHVMHF 20 (85)
T ss_dssp EEEEEEEEECCSSSCCEEE
T ss_pred eeEEEEeEEEcCCCCEEEE
Confidence 5778888888887666543
No 8
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.80 E-value=1.6e+02 Score=16.84 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=10.8
Q ss_pred CCCcceEEEEEEec
Q 033118 53 PHGNDEVSLTLNIT 66 (127)
Q Consensus 53 ~~~~d~a~i~Fdl~ 66 (127)
+++.|++.++||-.
T Consensus 50 ~~ggdRvvit~~GK 63 (70)
T d1dwka2 50 PEGGERAVITLDGK 63 (70)
T ss_dssp TTSSEEEEEEEEEE
T ss_pred CCCCCEEEEEEcce
Confidence 46689999998743
No 9
>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum [TaxId: 1515]}
Probab=5.77 E-value=1.8e+02 Score=18.03 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.4
Q ss_pred CCcceEEEEEEecCCCccee
Q 033118 54 HGNDEVSLTLNITADLQSLF 73 (127)
Q Consensus 54 ~~~d~a~i~Fdl~aDls~lF 73 (127)
..+|-+.+-|...-||++.|
T Consensus 36 ~~edi~Sv~FT~T~DL~a~F 55 (112)
T d1xhoa_ 36 EEDDIISIIFTVTKDLDAAF 55 (112)
T ss_dssp CGGGEEEEEEEECTTCCSSC
T ss_pred CHHHEEEEEEEecCcccccC
Confidence 34688999999999999887
No 10
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=5.76 E-value=2.6e+02 Score=16.77 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=0.0
Q ss_pred EeeeccCCCCCcceEEEEEEecCC
Q 033118 45 NINWFQKQPHGNDEVSLTLNITAD 68 (127)
Q Consensus 45 ~v~~~~~~~~~~d~a~i~Fdl~aD 68 (127)
.+......|++.-...++|.+|.|
T Consensus 70 ~i~~ip~~p~G~~~I~Vtf~iD~n 93 (118)
T d1dkza2 70 NLDGINPAPRGMPQIEVTFDIDAD 93 (118)
T ss_dssp EEECCCSCCTTCSCEEEEEEECTT
T ss_pred EEcCCccCCCCCcEEEEEEEecCC
Done!