BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033119
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DNW|A Chain A, Solution Structure Of Rsgi Ruh-059, An Acp Domain Of Acyl
Carrier Protein, Mitochondrial [precursor] From Human
Cdna
Length = 99
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 56/71 (78%)
Query: 51 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 110
+ DRV+ V+K + K+DP K++VN+HF DLGLDSLD VE++MA+E+EFGFEIPD +A+K+
Sbjct: 16 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKL 75
Query: 111 STINMAVDFIA 121
VD+IA
Sbjct: 76 MCPQEIVDYIA 86
>pdb|3EJB|A Chain A, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|C Chain C, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|E Chain E, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|G Chain G, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|A Chain A, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|C Chain C, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|E Chain E, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|G Chain G, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|A Chain A, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|C Chain C, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|E Chain E, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|G Chain G, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
Length = 97
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Query: 42 RGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFE 101
RGS + S + +RV ++ V +VT NA F DLG DSLDTVE+VMALEEEF E
Sbjct: 16 RGSHM--STIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTE 73
Query: 102 IPDNEADKISTINMAVDFIASH 123
IPD EA+KI+T+ A+D+I H
Sbjct: 74 IPDEEAEKITTVQAAIDYINGH 95
>pdb|2K92|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K93|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K94|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
Length = 77
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD 108
S + +RV ++ V +VT NA F DLG DSLDTVE+VMALEEEF EIPD EA+
Sbjct: 1 STIEERVKKIIGQQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAE 60
Query: 109 KISTINMAVDFIASH 123
KI+T+ A+D+I H
Sbjct: 61 KITTVQAAIDYINGH 75
>pdb|1L0H|A Chain A, Crystal Structure Of Butyryl-Acp From E.Coli
pdb|2FHS|C Chain C, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|3NY7|B Chain B, Stas Domain Of Ychm Bound To Acp
Length = 78
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD 108
S + +RV ++ V +VT NA F DLG DSLDTVE+VMALEEEF EIPD EA+
Sbjct: 2 STIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAE 61
Query: 109 KISTINMAVDFIASH 123
KI+T+ A+D+I H
Sbjct: 62 KITTVQAAIDYINGH 76
>pdb|1T8K|A Chain A, Crystal Structure Of Apo Acyl Carrier Protein From E. Coli
pdb|2FAC|A Chain A, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAC|B Chain B, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAD|A Chain A, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAD|B Chain B, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAE|A Chain A, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|2FAE|B Chain B, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|1ACP|A Chain A, Refinement Of The Nmr Structures For Acyl Carrier Protein
With Scalar Coupling Data
pdb|4ETW|D Chain D, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|B Chain B, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 77
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD 108
S + +RV ++ V +VT NA F DLG DSLDTVE+VMALEEEF EIPD EA+
Sbjct: 1 STIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAE 60
Query: 109 KISTINMAVDFIASH 123
KI+T+ A+D+I H
Sbjct: 61 KITTVQAAIDYINGH 75
>pdb|1X3O|A Chain A, Crystal Structure Of The Acyl Carrier Protein From Thermus
Thermophilus Hb8
Length = 80
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%)
Query: 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDN 105
+ + E+ ++V +V+ + +V+P KVT+ A F DLG DSLDTVE++M LE+EFG EI D
Sbjct: 1 MTEQEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDE 60
Query: 106 EADKISTINMAVDFIASH 123
EA+KI T+ AV++I +
Sbjct: 61 EAEKIRTVKDAVEYIKAK 78
>pdb|1L0I|A Chain A, Crystal Structure Of Butyryl-Acp I62m Mutant
Length = 78
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%)
Query: 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD 108
S + +RV ++ V +VT NA F DLG DSLDTVE+VMALEEEF EIPD EA+
Sbjct: 2 STIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAE 61
Query: 109 KISTINMAVDFIASH 123
K++T+ A+D+I H
Sbjct: 62 KMTTVQAAIDYINGH 76
>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier
Protein (Acp)
Length = 80
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 53/75 (70%)
Query: 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD 108
S + +RV ++ VD ++V A F +DLG DSLDTVE+VMALEEEF EIPD EA+
Sbjct: 5 SNIEERVKKIIVEQLGVDEAEVKNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAE 64
Query: 109 KISTINMAVDFIASH 123
KI+T+ A+D++ SH
Sbjct: 65 KITTVQAAIDYVNSH 79
>pdb|2L3V|A Chain A, Nmr Structure Of Acyl Carrier Protein From Brucella
Melitensis
Length = 79
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 48/72 (66%)
Query: 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD 108
S+ +RV +V VD KVT A F +DLG DSLDTVE+VMA EEEFG EIPD+ A+
Sbjct: 3 SDTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAE 62
Query: 109 KISTINMAVDFI 120
I T+ AV FI
Sbjct: 63 TILTVGDAVKFI 74
>pdb|4DXE|H Chain H, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|L Chain L, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|K Chain K, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|G Chain G, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|J Chain J, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|I Chain I, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
Length = 101
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 53 DRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKIST 112
D+V ++ + VD KVT +A F++DLG DSLD E+VM LE+EFG EIPD EA+KI+T
Sbjct: 29 DKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINT 88
Query: 113 INMAVDFIAS 122
+ AV FI S
Sbjct: 89 VGDAVKFINS 98
>pdb|2EHS|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 1)
pdb|2EHT|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 2)
Length = 77
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%)
Query: 51 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 110
+ +RV ++ V+ K+T A F DLG DSLD VE++MA EEEFG EIPD +A+KI
Sbjct: 2 LEERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKI 61
Query: 111 STINMAVDFI 120
T+ ++++
Sbjct: 62 QTVGDVINYL 71
>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein)
From Bacillus Subtilis
Length = 78
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD 108
++ +RV ++ + VD + V + A F+ DLG DSLD VE+VM LE+EF EI D +A+
Sbjct: 3 ADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAE 62
Query: 109 KISTINMAVDFIASHP 124
KI+T+ AV++I +
Sbjct: 63 KIATVGDAVNYIQNQQ 78
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 54 RVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTI 113
RV ++ + VD + V + A F+ DLG DSLD VE+VM LE+EF EI D +A+KI+T+
Sbjct: 6 RVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIATV 65
Query: 114 NMAVDFIASHP 124
AV++I +
Sbjct: 66 GDAVNYIQNQQ 76
>pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
Length = 81
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDN 105
L ++ +RV ++ + VD + V + A F+ DLG D LD VE+VM LE+EF EI D
Sbjct: 3 LGSADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDE 62
Query: 106 EADKISTINMAVDFIASH 123
+A+KI+T+ AV++I +
Sbjct: 63 DAEKIATVGDAVNYIQNQ 80
>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein
Length = 82
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 47 DKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNE 106
D + +RV VV + VD +++ ++F DL DSLD+VE+VMA EE+FG IPD E
Sbjct: 4 DDRPLLERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEE 63
Query: 107 ADKISTINMAVDFI 120
A KI+T+ A+ +I
Sbjct: 64 ASKIATVQDALSYI 77
>pdb|3GZL|A Chain A, Crystal Structure Of Holo Pfacp Disulfide-Linked Dimer
pdb|3GZM|A Chain A, Crystal Structure Of Holo Pfacp Reduced Monomer
pdb|3GZM|B Chain B, Crystal Structure Of Holo Pfacp Reduced Monomer
Length = 81
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 65 VDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123
V+ K+ +N++F DLG DSLD VE++MALEE+F I D +A KI+T+ A+D+I +
Sbjct: 20 VEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKN 78
>pdb|2FQ0|A Chain A, Solution Structure Of Major Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
pdb|2FQ2|A Chain A, Solution Structure Of Minor Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
Length = 79
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 65 VDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123
V+ K+ +N++F DLG DSLD VE++MALEE+F I D +A KI+T+ A+D+I +
Sbjct: 18 VEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKN 76
>pdb|2LOL|A Chain A, Nmr Structure Of An Acyl-Carrier Protein From Rickettsia
Prowazekii, Seattle Structural Genomics Center For
Infectious Disease (Ssgcid)
Length = 81
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 54 RVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTI 113
+VI +V D + +T ++ F DL DSLDTVE++MA+E E+G +IPD+EA KI T+
Sbjct: 10 KVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTV 69
Query: 114 NMAVDFI 120
+ + +I
Sbjct: 70 SDVIKYI 76
>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein
pdb|2FVA|A Chain A, Structure Of 18:0-Acp With Docked Fatty Acid
pdb|2FVE|A Chain A, Structure Of 10:0-Acp (Protein Alone)
pdb|2FVF|A Chain A, Structure Of 10:0-Acp (Protein With Docked Fatty Acid)
Length = 82
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 48 KSEVTDRVISVVKNFQKVDPSKV-TVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNE 106
K E D+V +VK + V T ++ F LG DSLDTVE+VM LEEEFG + +++
Sbjct: 2 KKETIDKVSDIVKEKLALGADVVVTADSEFSK-LGADSLDTVEIVMNLEEEFGINVDEDK 60
Query: 107 ADKISTINMAVDFIASHPQAK 127
A ISTI A D I + K
Sbjct: 61 AQDISTIQQAADVIEGLLEKK 81
>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|C Chain C, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|D Chain D, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 82
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 48 KSEVTDRVISVVKNFQKVDPSKV-TVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNE 106
K E D+V +VK + V T ++ F LG D LDTVE+VM LEEEFG + +++
Sbjct: 2 KKETIDKVSDIVKEKLALGADVVVTADSEFSK-LGADXLDTVEIVMNLEEEFGINVDEDK 60
Query: 107 ADKISTINMAVDFIASHPQAK 127
A ISTI A D I + K
Sbjct: 61 AQDISTIQQAADVIEGLLEKK 81
>pdb|2KWL|A Chain A, Solution Structure Of Acyl Carrier Protein From Borrelia
Burgdorferi
Length = 84
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDN 105
+D E+ +V S++ ++T ++ F DL DSLD E++ LEE F +IP+N
Sbjct: 5 MDNDEIFSKVRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPEN 64
Query: 106 EADKISTINMAVDFI 120
EA++ T+ V+FI
Sbjct: 65 EANEFETVGDVVNFI 79
>pdb|2L4B|A Chain A, Solution Structure Of A Putative Acyl Carrier Protein From
Anaplasma Phagocytophilum. Seattle Structural Genomics
Center For Infectious Disease Target Anpha.01018.A
Length = 88
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 48 KSEVTDRVISVVK--NFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDN 105
K++V + VI +K + QK S T + D LDSLD V+++M+LEE F EI D
Sbjct: 10 KAQVMESVIGCLKLNDEQKQILSGTT---NLAKDFNLDSLDFVDLIMSLEERFSLEISDE 66
Query: 106 EADKISTINMAVDFIASH 123
+A K+ T++ +IAS
Sbjct: 67 DAQKLETVDDICRYIASK 84
>pdb|2CNR|A Chain A, Structural Studies On The Interaction Of Scfas Acp With
Acps
Length = 82
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 48 KSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEA 107
+ E+ + +V + V ++ F +DL +DSL VEVV+A EE F +IPD++
Sbjct: 5 QEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDV 64
Query: 108 DKISTINMAVDFIASH 123
+ T+ A +I H
Sbjct: 65 KNLKTVGDATKYILDH 80
>pdb|2KOO|A Chain A, Nmr Solution Structures Of Hexanoyl-Acp From The
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOP|A Chain A, Nmr Solution Structures Of 3-Oxooctanyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOQ|A Chain A, Nmr Solution Structures Of 3-Hydroxyoctanoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOR|A Chain A, Nmr Solution Structures Of 2-Octenoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOS|A Chain A, Nmr Solution Structures Of Octanoyl-Acp From Streptomyces
Coelicolor Fatty Acid Synthase
Length = 81
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 48 KSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEA 107
+ E+ + +V + V ++ F +DL +DSL VEVV+A EE F +IPD++
Sbjct: 4 QEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDV 63
Query: 108 DKISTINMAVDFIASH 123
+ T+ A +I H
Sbjct: 64 KNLKTVGDATKYILDH 79
>pdb|1KLP|A Chain A, The Solution Structure Of Acyl Carrier Protein From
Mycobacterium Tuberculosis
Length = 115
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 65 VDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFI 120
++PS++T F +DL +DSL VE+ + E+++G +IPD + + T+ V +I
Sbjct: 22 IEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYI 77
>pdb|3CE7|A Chain A, Crystal Structure Of Toxoplasma Specific Mitochodrial Acyl
Carrier Protein, 59.M03510
Length = 107
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 47 DKSEVTDRVISVVKNF----QKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEI 102
D + VT+ ++ + + F +KV PS + D D LDTVE V+ +EE F +
Sbjct: 16 DINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTV 75
Query: 103 PDNEADKISTINMAVDFIASH 123
PD AD T+ DF+ S
Sbjct: 76 PDEVADNFQTLQEIADFVVSE 96
>pdb|3LMO|A Chain A, Crystal Structure Of Specialized Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
pdb|2KW2|A Chain A, Solution Nmr Of The Specialized Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
pdb|2LL8|A Chain A, Solution Nmr Structure Of The Specialized Holo-Acyl
Carrier Protein Rpa2022 From Rhodopseudomonas Palustris
Refined With Nh Rdcs, Northeast Structural Genomics
Consortium Target Rpr324
pdb|2LPK|A Chain A, Solution Nmr Of The Specialized Apo-Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
Length = 101
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 53 DRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIP 103
DRV +++ + +T +H +DLG+DSLD +++ A+++ FG ++P
Sbjct: 6 DRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLP 56
>pdb|1VKU|A Chain A, Crystal Structure Of Acyl Carrier Protein (Tm0175) From
Thermotoga Maritima At 2.00 A Resolution
Length = 100
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 78 NDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHPQ 125
+LG DS+D +++V E+EF I D E KI + +D + +
Sbjct: 44 KELGFDSIDVIDLVXFFEDEFALRIEDEEISKIRKVKDLIDIVIKKLE 91
>pdb|1AF8|A Chain A, Actinorhodin Polyketide Synthase Acyl Carrier Protein From
Streptomyces Coelicolor A3(2), Nmr, 24 Structures
pdb|2AF8|A Chain A, Actinorhodin Polyketide Synthase Acyl Carrier Protein From
Streptomyces Coelicolor A3(2), Nmr, Minimized Average
Structure
Length = 86
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 55 VISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTIN 114
++ D S ++ F+ D+G DSL +E LE +G IPD+ A ++ T
Sbjct: 14 LVECAGETDGTDLSGDFLDLRFE-DIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPR 72
Query: 115 MAVDFI 120
+D I
Sbjct: 73 ELLDLI 78
>pdb|2K0X|A Chain A, The Actinorhodin Holo Acyl Carrier Protein From S.
Coelicolor
pdb|2K0Y|A Chain A, The Actinorhodin Apo Acyl Carrier Protein From S.
Coelicolor
pdb|2KG6|A Chain A, Solution Structure Of The Acetyl Actinorhodin Acyl Carrier
Protein From Streptomyces Coelicolor
pdb|2KG8|A Chain A, Nmr Solution Structures Of Malonyl Acp From The
Actinorhodin Polyketide Synthase In Streptomyces
Coelicolor
pdb|2KG9|A Chain A, Nmr Solution Structures Of Butyryl-Acp (A Non-Polar, Non
Pathway Intermediate) From The Actinorhodin Polyketide
Synthase In Streptomyces Coelicolor
pdb|2KGA|A Chain A, Nmr Solution Structures Of Hexanoyl Acp (A Non Natural
Intermediate) From The Actinorhodin Polyketide Synthase
In Streptomyces Coelicolor
pdb|2KGC|A Chain A, Nmr Solution Structures Of Octanoyl Acp (A Non-Natural
Intermediate) From The Actinorhodin Polyketide Synthase
In Streptomyces Coelicolor
pdb|2KGD|A Chain A, Nmr Solution Structures Of 3-Oxo-Butyl-Acp, An
Intermediate Mimic From The Actinorhodin Polyketide
Synthase In Streptomyces Coelicolor
pdb|2KGE|A Chain A, Nmr Solution Structures Of 3,5-Dioxohexyl Acp (A Triketide
Mimic) From The Actinorhodin Polyketide Synthase In
Streptomyces Coelicolor
Length = 86
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 57 SVVKNFQKVDPSKVT---VNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTI 113
++V++ + D + ++ ++ F+ D+G DSL +E LE +G IPD+ A ++ T
Sbjct: 13 ALVESAGETDGTDLSGDFLDLRFE-DIGYDSLALMETAARLESRYGVSIPDDVAGRVDTP 71
Query: 114 NMAVDFI 120
+D I
Sbjct: 72 RELLDLI 78
>pdb|2CGQ|A Chain A, A Putative Acyl Carrier Protein(Rv0033) From Mycobacterium
Tuberculosis
Length = 113
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 70 VTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTIN 114
+T N +DLG DSL +++ LE+EF I +A I T+
Sbjct: 45 ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVG 89
>pdb|1FH1|A Chain A, Backbone Fold Of Nodf
Length = 92
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 80 LGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFI 120
LG+DSL +V+ LE+ +G +I N AD S +N D +
Sbjct: 41 LGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVV 81
>pdb|2LTE|A Chain A, Solution Nmr Structure Of The Specialized Acyl Carrier
Protein Pa3334 (Apo) From Pseudomonas Aeruginosa,
Northeast Structural Genomics Consortium Target Pat415
Length = 103
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD 108
+++ D +++V+ V +++ ++ + DL DSL E+ + L +EFG D+E D
Sbjct: 25 NDMEDHLLTVLSVASGVPKEEISRDSRME-DLAFDSLVVSELSLKLRKEFGVTGVDDELD 83
Query: 109 KISTINMAVDFIASHPQA 126
+ T++ + H A
Sbjct: 84 LLETVDELFQLVEKHRAA 101
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 23 PSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISV-----VKNFQKVDPSKVTVNAHFQ 77
P P SF AE+ + D S D V +V +++ ++P V
Sbjct: 2102 PHPVLSSF-----VLAEKKAAAPRDGSSQKDLVKAVAHILGIRDVASINPDSTLV----- 2151
Query: 78 NDLGLDSLDTVEVVMALEEEFGFEIPDNEADKIS 111
DLGLDSL VEV LE E + E ++S
Sbjct: 2152 -DLGLDSLMGVEVRQILEREHDLVLSMREVRQLS 2184
>pdb|2JQ4|A Chain A, Complete Resonance Assignments And Solution Structure
Calculation Of Atc2521 (Nesg Id: Att6) From
Agrobacterium Tumefaciens
Length = 105
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 81 GLDSLDTVEVVMALEEEFGFEIPDN 105
GL S +V++++ +EE F E PDN
Sbjct: 54 GLSSFASVQLMLGIEEAFDIEFPDN 78
>pdb|2LKI|A Chain A, Solution Nmr Structure Of Holo Acyl Carrier Protein Ne2163
From Nitrosomonas Europaea. Northeast Structural
Genomics Consortium Target Net1
Length = 105
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 82 LDSLDTVEVVMALEEEFGFEIPDNE 106
LDS+ V V+ ALEE F F + D+E
Sbjct: 59 LDSMAVVNVITALEEYFDFSVDDDE 83
>pdb|1OR5|A Chain A, Solution Structure Of The Holo-Form Of The Frenolicin Acyl
Carrier Protein, Minimized Mean Structure
Length = 83
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 79 DLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHP 124
DLG DSL +E L++ +G + D ++ T +D + + P
Sbjct: 35 DLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTP 80
>pdb|2PNG|A Chain A, Type I Rat Fatty Acid Synthase Acyl Carrier Protein (Acp)
Domain
Length = 89
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 79 DLGLDSLDTVEVVMALEEEFGFEIPDNEADKIS 111
DLGLDSL VEV LE E +P E +++
Sbjct: 33 DLGLDSLMGVEVRQILEREHDLVLPIREVRQLT 65
>pdb|1DV5|A Chain A, Tertiary Structure Of Apo-D-Alanyl Carrier Protein
pdb|1HQB|A Chain A, Tertiary Structure Of Apo-D-Alanyl Carrier Protein
Length = 80
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 82 LDSLDTVEVVMALEEEFGFEIPDNEADK 109
LDS+ TV++++ L+ +FG + P +E D+
Sbjct: 36 LDSMGTVQLLLELQSQFGVDAPVSEFDR 63
>pdb|2CG5|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase In Complex With
Cytosolic Acyl Carrier Protein And Coenzyme A
Length = 91
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 79 DLGLDSLDTVEVVMALEEEFGF 100
DLGLD+L +VEV LE E
Sbjct: 35 DLGLDALMSVEVRQTLERELNL 56
>pdb|2ODR|B Chain B, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 648
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 40/116 (34%), Gaps = 31/116 (26%)
Query: 19 VQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQN 78
+ + P PF L SI RCF E QK D S +
Sbjct: 218 MNKKPLPFKLF--SIDRCFRRE----------------------QKEDKSHLMTYHSASC 253
Query: 79 DL---GLDSLDTVEVVMALEEEFGFE----IPDNEADKISTINMAVDFIASHPQAK 127
+ G+D D + L +FGF IPD + K T + A HP+ K
Sbjct: 254 AIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLK 309
>pdb|2ODR|A Chain A, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 665
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 40/116 (34%), Gaps = 31/116 (26%)
Query: 19 VQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQN 78
+ + P PF L SI RCF E QK D S +
Sbjct: 218 MNKKPLPFKLF--SIDRCFRRE----------------------QKEDKSHLMTYHSASC 253
Query: 79 DL---GLDSLDTVEVVMALEEEFGFE----IPDNEADKISTINMAVDFIASHPQAK 127
+ G+D D + L +FGF IPD + K T + A HP+ K
Sbjct: 254 AIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLK 309
>pdb|2ODR|C Chain C, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 701
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 40/116 (34%), Gaps = 31/116 (26%)
Query: 19 VQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQN 78
+ + P PF L SI RCF E QK D S +
Sbjct: 218 MNKKPLPFKLF--SIDRCFRRE----------------------QKEDKSHLMTYHSASC 253
Query: 79 DL---GLDSLDTVEVVMALEEEFGFE----IPDNEADKISTINMAVDFIASHPQAK 127
+ G+D D + L +FGF IPD + K T + A HP+ K
Sbjct: 254 AIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLK 309
>pdb|2ODR|D Chain D, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 685
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 40/116 (34%), Gaps = 31/116 (26%)
Query: 19 VQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQN 78
+ + P PF L SI RCF E QK D S +
Sbjct: 218 MNKKPLPFKLF--SIDRCFRRE----------------------QKEDKSHLMTYHSASC 253
Query: 79 DL---GLDSLDTVEVVMALEEEFGFE----IPDNEADKISTINMAVDFIASHPQAK 127
+ G+D D + L +FGF IPD + K T + A HP+ K
Sbjct: 254 AIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLK 309
>pdb|1NQ4|A Chain A, Solution Structure Of Oxytetracycline Acyl Carrier Protein
Length = 95
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 80 LGLDSLDTVEVVMALEEEFGFEIPDNEADKIST 112
LG DSL + V +E ++G ++ D+ +K +T
Sbjct: 37 LGYDSLALLNTVGRIERDYGVQLGDDAVEKATT 69
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 48 KSEVTDRVISVVKNFQKVDPSKVTVNAHF 76
K+++ D+ + NFQK P+K AHF
Sbjct: 548 KNKLYDQHLGKSNNFQKPKPAKGKAEAHF 576
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,184,694
Number of Sequences: 62578
Number of extensions: 108202
Number of successful extensions: 451
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 61
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)