Query 033119
Match_columns 127
No_of_seqs 129 out of 1346
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.8 4E-20 8.7E-25 132.2 6.8 124 3-127 6-130 (131)
2 PRK05350 acyl carrier protein; 99.8 5.1E-20 1.1E-24 122.0 6.7 81 45-125 1-81 (82)
3 CHL00124 acpP acyl carrier pro 99.8 9.8E-20 2.1E-24 120.1 6.4 82 46-127 1-82 (82)
4 PRK07117 acyl carrier protein; 99.8 1.2E-19 2.6E-24 120.2 6.8 78 46-124 1-79 (79)
5 PRK12449 acyl carrier protein; 99.8 2.6E-19 5.6E-24 117.6 7.3 79 46-124 1-79 (80)
6 PRK07639 acyl carrier protein; 99.8 4.3E-19 9.2E-24 119.2 7.8 80 46-125 1-83 (86)
7 PRK05883 acyl carrier protein; 99.8 8.9E-19 1.9E-23 118.8 8.0 82 44-125 8-89 (91)
8 PRK08172 putative acyl carrier 99.8 3.6E-19 7.7E-24 118.6 5.7 77 50-126 4-80 (82)
9 PTZ00171 acyl carrier protein; 99.8 6E-19 1.3E-23 129.3 7.4 88 40-127 60-147 (148)
10 PRK05828 acyl carrier protein; 99.8 6.1E-19 1.3E-23 118.1 6.8 81 46-127 1-82 (84)
11 TIGR00517 acyl_carrier acyl ca 99.7 6.6E-18 1.4E-22 110.1 6.5 76 49-124 2-77 (77)
12 COG0236 AcpP Acyl carrier prot 99.7 5.6E-17 1.2E-21 106.9 6.5 78 47-124 2-79 (80)
13 PRK09184 acyl carrier protein; 99.7 1.8E-16 3.8E-21 107.2 7.2 79 47-125 3-88 (89)
14 PRK00982 acpP acyl carrier pro 99.7 2.3E-16 5E-21 102.8 6.2 76 49-124 2-77 (78)
15 PRK06508 acyl carrier protein; 99.6 1.3E-16 2.8E-21 108.8 4.5 79 49-127 2-91 (93)
16 PRK05087 D-alanine--poly(phosp 99.6 9.8E-15 2.1E-19 96.5 6.8 75 50-124 2-78 (78)
17 PRK07081 acyl carrier protein; 99.6 5.8E-15 1.3E-19 98.4 4.9 73 52-125 2-78 (83)
18 PF00550 PP-binding: Phosphopa 99.5 2.3E-14 5E-19 90.0 7.3 67 53-120 1-67 (67)
19 TIGR01688 dltC D-alanine--poly 99.3 1E-11 2.2E-16 81.3 5.1 69 53-122 2-73 (73)
20 PF14573 PP-binding_2: Acyl-ca 99.1 1.2E-10 2.7E-15 78.4 5.0 77 47-124 7-88 (96)
21 smart00823 PKS_PP Phosphopante 98.7 6.3E-08 1.4E-12 61.0 7.5 74 49-123 11-85 (86)
22 TIGR02813 omega_3_PfaA polyket 98.7 3.6E-08 7.8E-13 96.7 7.9 81 44-124 1301-1383(2582)
23 PRK06060 acyl-CoA synthetase; 98.4 8.8E-07 1.9E-11 77.1 7.2 75 49-124 544-619 (705)
24 TIGR03443 alpha_am_amid L-amin 98.2 3.3E-06 7.1E-11 78.4 7.0 76 47-123 845-920 (1389)
25 PRK10252 entF enterobactin syn 98.1 8.9E-06 1.9E-10 74.7 6.9 75 46-123 974-1048(1296)
26 TIGR02813 omega_3_PfaA polyket 98.0 1.6E-05 3.4E-10 78.8 7.2 79 46-124 1207-1287(2582)
27 PRK12467 peptide synthase; Pro 97.8 4E-05 8.7E-10 78.0 6.8 73 47-122 3602-3674(3956)
28 PRK05691 peptide synthase; Val 97.8 5E-05 1.1E-09 77.7 6.9 75 46-123 4237-4311(4334)
29 PRK05691 peptide synthase; Val 97.7 7.3E-05 1.6E-09 76.6 7.2 77 44-123 580-656 (4334)
30 PRK12316 peptide synthase; Pro 97.7 8.8E-05 1.9E-09 77.0 6.7 74 47-123 5069-5142(5163)
31 PRK12467 peptide synthase; Pro 97.6 8.9E-05 1.9E-09 75.6 6.4 75 46-123 1026-1100(3956)
32 COG3433 Aryl carrier domain [S 97.6 0.00015 3.3E-09 47.2 4.9 69 55-125 3-71 (74)
33 PF07377 DUF1493: Protein of u 97.5 0.0003 6.5E-09 48.9 5.4 59 49-107 2-64 (111)
34 PRK12316 peptide synthase; Pro 97.4 0.0002 4.2E-09 74.5 5.7 74 47-123 2513-2586(5163)
35 KOG1202 Animal-type fatty acid 96.4 0.0017 3.6E-08 61.2 1.7 55 54-109 2008-2063(2376)
36 PF10501 Ribosomal_L50: Riboso 94.8 0.22 4.8E-06 34.6 7.4 75 47-122 5-81 (112)
37 TIGR02372 4_coum_CoA_lig 4-cou 93.9 0.31 6.7E-06 40.3 7.5 79 46-124 3-93 (386)
38 KOG2452 Formyltetrahydrofolate 86.7 1.2 2.5E-05 39.1 4.6 71 52-124 324-395 (881)
39 PF08766 DEK_C: DEK C terminal 84.1 3.1 6.8E-05 25.0 4.5 40 48-105 2-41 (54)
40 KOG1178 Non-ribosomal peptide 81.4 1.6 3.5E-05 41.0 3.5 54 68-122 614-667 (1032)
41 smart00151 SWIB SWI complex, B 67.4 12 0.00025 24.1 3.9 55 44-98 18-75 (77)
42 smart00550 Zalpha Z-DNA-bindin 47.2 23 0.0005 22.1 2.6 48 47-100 3-52 (68)
43 PF03471 CorC_HlyC: Transporte 45.2 52 0.0011 20.8 4.2 31 91-124 16-46 (81)
44 PF10678 DUF2492: Protein of u 36.9 83 0.0018 20.7 4.1 14 88-101 23-36 (78)
45 TIGR03853 matur_matur probable 36.5 83 0.0018 20.7 4.0 36 88-123 21-57 (77)
46 PF00874 PRD: PRD domain; Int 31.5 40 0.00086 20.6 1.9 22 86-107 58-79 (89)
47 COG1905 NuoE NADH:ubiquinone o 30.0 22 0.00049 26.4 0.6 65 53-125 94-158 (160)
48 PF02201 SWIB: SWIB/MDM2 domai 29.2 7.7 0.00017 24.9 -1.8 51 44-94 18-71 (76)
49 PRK01964 4-oxalocrotonate taut 27.3 70 0.0015 19.2 2.4 25 47-71 16-40 (64)
50 PF10850 DUF2653: Protein of u 26.6 67 0.0015 21.8 2.4 57 46-102 5-75 (91)
51 PF14230 DUF4333: Domain of un 26.6 87 0.0019 20.2 2.9 29 43-71 17-45 (80)
52 KOG1615 Phosphoserine phosphat 26.4 29 0.00063 27.2 0.7 97 3-100 65-173 (227)
53 PF06753 Bradykinin: Bradykini 25.6 41 0.0009 16.1 0.9 11 19-29 1-11 (19)
54 PRK02220 4-oxalocrotonate taut 25.2 80 0.0017 18.5 2.4 25 47-71 16-40 (61)
55 PF09346 SMI1_KNR4: SMI1 / KNR 24.5 45 0.00098 21.7 1.3 17 89-105 5-21 (130)
56 cd00491 4Oxalocrotonate_Tautom 24.1 1E+02 0.0023 17.7 2.8 25 47-71 15-39 (58)
57 PF00126 HTH_1: Bacterial regu 23.4 1.1E+02 0.0023 18.2 2.7 26 79-104 22-47 (60)
58 smart00860 SMI1_KNR4 SMI1 / KN 23.2 67 0.0015 20.2 1.9 18 89-106 5-22 (129)
59 PF01361 Tautomerase: Tautomer 23.0 85 0.0018 18.4 2.2 24 47-70 15-38 (60)
60 TIGR00013 taut 4-oxalocrotonat 22.9 1.1E+02 0.0024 18.0 2.8 25 47-71 16-40 (63)
61 PRK00745 4-oxalocrotonate taut 22.0 97 0.0021 18.2 2.3 24 47-70 16-39 (62)
62 PF11731 Cdd1: Pathogenicity l 21.8 1.5E+02 0.0032 20.1 3.3 58 46-107 1-64 (93)
63 PRK08097 ligB NAD-dependent DN 21.2 1.3E+02 0.0028 26.7 3.8 79 43-123 22-117 (562)
64 PTZ00397 macrophage migration 20.9 1.1E+02 0.0024 20.6 2.7 25 47-71 73-97 (116)
65 PRK02289 4-oxalocrotonate taut 20.0 1.3E+02 0.0028 17.9 2.6 25 47-71 16-40 (60)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=4e-20 Score=132.23 Aligned_cols=124 Identities=46% Similarity=0.682 Sum_probs=102.1
Q ss_pred hhHHHHHhhhhhccccccCCCCCCc-cccchhhhhhhhcccCCCCCHHHHHHHHHHHHHhhhCCCCCccccCCccccccC
Q 033119 3 AARGALLKYLRVNVATVQRNPSPFS-LSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLG 81 (127)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLG 81 (127)
+.+++-+.+...++-+..++.|-+. ..+++...++... .+.-.+++++.+++..++..+..++++.++.+.+|..|||
T Consensus 6 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~-~p~~l~k~~v~~RVl~VVk~~dki~~~k~~~~s~f~~DLG 84 (131)
T KOG1748|consen 6 SLSLQRLSSRISTPSSLAQQAPSFNFGRTTGLLRSYSAE-LPRCLAKKEVVDRVLDVVKKFDKIDPSKLTTDSDFFKDLG 84 (131)
T ss_pred HHHHHHHhhhhcccchhhhcCcccCcccchhHHHHHhhh-hhhhhhHHHHHHHHHHHHHHhhcCCccccchhhHHHHhcC
Confidence 4556666777666666666666664 3444454444443 2223799999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCCCCC
Q 033119 82 LDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHPQAK 127 (127)
Q Consensus 82 lDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~~ak 127 (127)
+||||.||++++||++||++||+.+.+++.|+++.++||.++..+|
T Consensus 85 lDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~~d~k 130 (131)
T KOG1748|consen 85 LDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADKPDVK 130 (131)
T ss_pred CcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999987764
No 2
>PRK05350 acyl carrier protein; Provisional
Probab=99.81 E-value=5.1e-20 Score=121.99 Aligned_cols=81 Identities=26% Similarity=0.474 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCC
Q 033119 45 FLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHP 124 (127)
Q Consensus 45 ~M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~ 124 (127)
+|++++++++|++++++.+++++++++++++|.+++||||+++++++.++|++||++|+++++..+.|++++++||.+++
T Consensus 1 ~m~~~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 1 MMTREEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 48999999999999999999999999999998789999999999999999999999999999999999999999999887
Q ss_pred C
Q 033119 125 Q 125 (127)
Q Consensus 125 ~ 125 (127)
+
T Consensus 81 ~ 81 (82)
T PRK05350 81 K 81 (82)
T ss_pred c
Confidence 5
No 3
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.80 E-value=9.8e-20 Score=120.12 Aligned_cols=82 Identities=48% Similarity=0.752 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCCC
Q 033119 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHPQ 125 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~~ 125 (127)
|+++++.+.+++++++.++++++.++++++|.+++||||+++++++.++|++||++++++++..+.|++++++||.++++
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 80 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKIN 80 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHhc
Confidence 88999999999999999999999999999998779999999999999999999999999999999999999999999987
Q ss_pred CC
Q 033119 126 AK 127 (127)
Q Consensus 126 ak 127 (127)
.|
T Consensus 81 ~~ 82 (82)
T CHL00124 81 KK 82 (82)
T ss_pred cC
Confidence 75
No 4
>PRK07117 acyl carrier protein; Validated
Probab=99.80 E-value=1.2e-19 Score=120.23 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHhhh-CCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCC
Q 033119 46 LDKSEVTDRVISVVKNFQ-KVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHP 124 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l-~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~ 124 (127)
|++++|+++|++++.+++ ++++++++++++|. +||+||++++++++.+|++||++||++++.++.|++++++||.++.
T Consensus 1 M~~~ei~~~v~~ii~e~~p~i~~~~I~~~~~l~-DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPDLDQHQFQPEDSLV-DLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHCCCCCChh-hcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 789999999999999999 79999999999996 7999999999999999999999999999999999999999999863
No 5
>PRK12449 acyl carrier protein; Provisional
Probab=99.79 E-value=2.6e-19 Score=117.61 Aligned_cols=79 Identities=23% Similarity=0.552 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCC
Q 033119 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHP 124 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~ 124 (127)
|++++|.+++++++++.++.++..++++++|.+++||||++++++++++|++||+.+|++++.++.|++++++||.+++
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 79 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRL 79 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999999999875
No 6
>PRK07639 acyl carrier protein; Provisional
Probab=99.79 E-value=4.3e-19 Score=119.17 Aligned_cols=80 Identities=14% Similarity=0.363 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHhhhCCCC-CccccCCccccccCCChhhHHHHHHHHHHHhCCcCCcccc--ccCCcHHHHHHHHHc
Q 033119 46 LDKSEVTDRVISVVKNFQKVDP-SKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEA--DKISTINMAVDFIAS 122 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l~i~~-~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l--~~~~Tv~~Lv~~I~~ 122 (127)
|++++|+++|+++|++.++.+. ++++++++|.++||+||+++++|+++||++||++||++++ .++.|++++++||.+
T Consensus 1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEE 80 (86)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHH
Confidence 8999999999999999999875 7899999999999999999999999999999999999987 589999999999998
Q ss_pred CCC
Q 033119 123 HPQ 125 (127)
Q Consensus 123 ~~~ 125 (127)
+++
T Consensus 81 ~~~ 83 (86)
T PRK07639 81 LQP 83 (86)
T ss_pred hhc
Confidence 864
No 7
>PRK05883 acyl carrier protein; Validated
Probab=99.78 E-value=8.9e-19 Score=118.78 Aligned_cols=82 Identities=24% Similarity=0.350 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcC
Q 033119 44 SFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123 (127)
Q Consensus 44 ~~M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~ 123 (127)
.++++++|.++++++|++.++++++.++++++|.+++||||+++++++.+||++||++|+++++..+.||+++++||.++
T Consensus 8 ~~~~~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~ 87 (91)
T PRK05883 8 MTSSPSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAK 87 (91)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 56799999999999999999999999999999988999999999999999999999999999999999999999999988
Q ss_pred CC
Q 033119 124 PQ 125 (127)
Q Consensus 124 ~~ 125 (127)
++
T Consensus 88 ~~ 89 (91)
T PRK05883 88 VR 89 (91)
T ss_pred cc
Confidence 65
No 8
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.78 E-value=3.6e-19 Score=118.63 Aligned_cols=77 Identities=25% Similarity=0.416 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCCCC
Q 033119 50 EVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHPQA 126 (127)
Q Consensus 50 ~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~~a 126 (127)
++.+++++++++.+++++++++++++|.++|||||+++++|+.+||++||++||.+++.++.|++++++||.+++++
T Consensus 4 ~i~~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~~ 80 (82)
T PRK08172 4 DIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLES 80 (82)
T ss_pred cHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999999999988999999999999999999999999999999999999999999998765
No 9
>PTZ00171 acyl carrier protein; Provisional
Probab=99.78 E-value=6e-19 Score=129.29 Aligned_cols=88 Identities=48% Similarity=0.758 Sum_probs=83.4
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHH
Q 033119 40 EVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDF 119 (127)
Q Consensus 40 ~~~~~~M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~ 119 (127)
.+.+..|+++++.++|++++++.++++++++++++.|.+++||||++.++|+++||++||++||++++..+.|++++++|
T Consensus 60 ~~~~~~~~~~~v~~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~ 139 (148)
T PTZ00171 60 KSKQYLLSKEDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDY 139 (148)
T ss_pred cccccccCHHHHHHHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHH
Confidence 35677899999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHcCCCCC
Q 033119 120 IASHPQAK 127 (127)
Q Consensus 120 I~~~~~ak 127 (127)
|.++.+.|
T Consensus 140 V~~~~~~~ 147 (148)
T PTZ00171 140 IEQNNMAK 147 (148)
T ss_pred HHHHHhcc
Confidence 99988765
No 10
>PRK05828 acyl carrier protein; Validated
Probab=99.78 E-value=6.1e-19 Score=118.13 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHh-hhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCC
Q 033119 46 LDKSEVTDRVISVVKN-FQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHP 124 (127)
Q Consensus 46 M~~~~I~~~I~~il~~-~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~ 124 (127)
|++++|+++|++++++ .++.+.+++++++.|. +||+||+++++++++||++||++||++++..+.|++++++||.+++
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~~d~i~~~~~~~-dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVTLDESNINKPYR-ELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCCcccccCCCCHH-hcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 8999999999999998 5889999999999995 8999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 033119 125 QAK 127 (127)
Q Consensus 125 ~ak 127 (127)
+.|
T Consensus 80 ~~~ 82 (84)
T PRK05828 80 KQK 82 (84)
T ss_pred hcc
Confidence 654
No 11
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.73 E-value=6.6e-18 Score=110.13 Aligned_cols=76 Identities=53% Similarity=0.787 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCC
Q 033119 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHP 124 (127)
Q Consensus 49 ~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~ 124 (127)
+++.++|++++++.+++++++++++++|.+++||||+++++|+..+|++||+++|.+++.++.|++++++||.+++
T Consensus 2 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 77 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEENQ 77 (77)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhcC
Confidence 4689999999999999999999999999879999999999999999999999999999999999999999998763
No 12
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=5.6e-17 Score=106.94 Aligned_cols=78 Identities=46% Similarity=0.706 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCC
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHP 124 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~ 124 (127)
....+...+++++.+.++.+..++++++.|.+++|+||+++++|++.||++||++||++++.++.|++++++||.++.
T Consensus 2 ~~~~~~~~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~~ 79 (80)
T COG0236 2 QMEAIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEELL 79 (80)
T ss_pred chHHHHHHHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHhc
Confidence 456799999999999999998899999999867999999999999999999999999999999999999999999865
No 13
>PRK09184 acyl carrier protein; Provisional
Probab=99.67 E-value=1.8e-16 Score=107.24 Aligned_cols=79 Identities=16% Similarity=0.471 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHhhhCC---CCCccccCCcc-ccccCCChhhHHHHHHHHHHHhCCcCCccc---cccCCcHHHHHHH
Q 033119 47 DKSEVTDRVISVVKNFQKV---DPSKVTVNAHF-QNDLGLDSLDTVEVVMALEEEFGFEIPDNE---ADKISTINMAVDF 119 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i---~~~~I~~dt~l-~~dLGlDSL~~veLi~~lEeefgi~I~~~~---l~~~~Tv~~Lv~~ 119 (127)
+.++++.+|+++|++.+++ ++++|+++++| .++||+||+++++|++.+|++||++|++++ +..+.||+++++|
T Consensus 3 ~~~~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~ 82 (89)
T PRK09184 3 SMTALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAY 82 (89)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHH
Confidence 4568999999999999984 88999999996 547999999999999999999999998766 4469999999999
Q ss_pred HHcCCC
Q 033119 120 IASHPQ 125 (127)
Q Consensus 120 I~~~~~ 125 (127)
|.++.+
T Consensus 83 I~~~~~ 88 (89)
T PRK09184 83 VAAHRT 88 (89)
T ss_pred HHHhhc
Confidence 988654
No 14
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.66 E-value=2.3e-16 Score=102.81 Aligned_cols=76 Identities=54% Similarity=0.800 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCC
Q 033119 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHP 124 (127)
Q Consensus 49 ~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~ 124 (127)
.++.+.+++++++.++++++.++++++|.+++|+||++.++++..+|++||+++|++++.++.|++++++|+.+++
T Consensus 2 ~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 77 (78)
T PRK00982 2 SEIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQ 77 (78)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHhc
Confidence 3588999999999999999999999999669999999999999999999999999999999999999999998875
No 15
>PRK06508 acyl carrier protein; Provisional
Probab=99.65 E-value=1.3e-16 Score=108.76 Aligned_cols=79 Identities=25% Similarity=0.432 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccc-----------cCCcHHHHH
Q 033119 49 SEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD-----------KISTINMAV 117 (127)
Q Consensus 49 ~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~-----------~~~Tv~~Lv 117 (127)
+.++++|+++|++.+++++++|+++++|.++|||||+++++|+..+|++||++||++++. ++.|+++++
T Consensus 2 ~~i~ekv~~Ilae~~~vd~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~~ 81 (93)
T PRK06508 2 SSTFDKVADIIAETSDIPRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNLC 81 (93)
T ss_pred hHHHHHHHHHHHHHhCCCHHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHHH
Confidence 468899999999999999999999999989999999999999999999999999999864 456888999
Q ss_pred HHHHcCCCCC
Q 033119 118 DFIASHPQAK 127 (127)
Q Consensus 118 ~~I~~~~~ak 127 (127)
.+|.+...+|
T Consensus 82 ~~i~~~~~~~ 91 (93)
T PRK06508 82 AKIDELVAAK 91 (93)
T ss_pred HHHHHHHHhh
Confidence 9988766554
No 16
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=99.56 E-value=9.8e-15 Score=96.47 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccc--cCCcHHHHHHHHHcCC
Q 033119 50 EVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD--KISTINMAVDFIASHP 124 (127)
Q Consensus 50 ~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~--~~~Tv~~Lv~~I~~~~ 124 (127)
+++++|+++|.+.++.+..+++++++|.+++++||+++++|++.+|++||++||++++. +|.|++++++||.+.+
T Consensus 2 ~i~~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l~ 78 (78)
T PRK05087 2 DFKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEELQ 78 (78)
T ss_pred cHHHHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHcC
Confidence 47889999999998888778899999987777999999999999999999999999986 4999999999998764
No 17
>PRK07081 acyl carrier protein; Provisional
Probab=99.55 E-value=5.8e-15 Score=98.37 Aligned_cols=73 Identities=23% Similarity=0.448 Sum_probs=65.2
Q ss_pred HHHHHHHHHhh--hCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccc--cCCcHHHHHHHHHcCCC
Q 033119 52 TDRVISVVKNF--QKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEAD--KISTINMAVDFIASHPQ 125 (127)
Q Consensus 52 ~~~I~~il~~~--l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~--~~~Tv~~Lv~~I~~~~~ 125 (127)
.++|+++|.+. ++++++.++++++|. ++|+||+++++|+..||++||++||++++. +|.|+++++++|.++++
T Consensus 2 ~~~i~~ii~~~~~~~~~~~~i~~d~~l~-dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~ 78 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPIDSIADDADLY-EAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQD 78 (83)
T ss_pred hHHHHHHHHHHHcCCCCHHhcCCCCCHh-hcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHh
Confidence 57788888887 555678999999997 799999999999999999999999999985 59999999999988764
No 18
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.55 E-value=2.3e-14 Score=90.01 Aligned_cols=67 Identities=37% Similarity=0.663 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHH
Q 033119 53 DRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFI 120 (127)
Q Consensus 53 ~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I 120 (127)
++|++++++++++++++++++++|. ++|+||+.+++++..++++||+.++..++.++.|++++++||
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~~-~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDFF-DLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBTT-TTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCHH-HhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 4788899999999999999999998 799999999999999999999999999999999999999986
No 19
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=99.25 E-value=1e-11 Score=81.27 Aligned_cols=69 Identities=23% Similarity=0.409 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhCCCCCccccCCccccccCC-ChhhHHHHHHHHHHHhCCcCCcccc--ccCCcHHHHHHHHHc
Q 033119 53 DRVISVVKNFQKVDPSKVTVNAHFQNDLGL-DSLDTVEVVMALEEEFGFEIPDNEA--DKISTINMAVDFIAS 122 (127)
Q Consensus 53 ~~I~~il~~~l~i~~~~I~~dt~l~~dLGl-DSL~~veLi~~lEeefgi~I~~~~l--~~~~Tv~~Lv~~I~~ 122 (127)
++|+++|.++.+.+.....++++|. +.|+ ||+..++|+..||++|||++|+.++ .+|.|++.++++|.+
T Consensus 2 e~i~eIL~~i~~~~~~~~~~d~~L~-~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~~ 73 (73)
T TIGR01688 2 NGVLDILAEVTGSDDVKENPDLELF-EEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLEE 73 (73)
T ss_pred hHHHHHHHHHhcCcccccCccHHHH-HccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHhC
Confidence 5788888888776655668888998 6665 9999999999999999999999997 489999999999864
No 20
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=99.11 E-value=1.2e-10 Score=78.38 Aligned_cols=77 Identities=35% Similarity=0.601 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccccCCcc-----ccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHH
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVTVNAHF-----QNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIA 121 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~~dt~l-----~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~ 121 (127)
+-+.+.++|..++.+++.-. .++++.+.+ .+++.||||+.++++..+|++|+++||++...++.|++++++||.
T Consensus 7 d~nav~~~i~g~~kkyl~~~-~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv 85 (96)
T PF14573_consen 7 DINAVTEYILGMLKKYLSEG-EEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVV 85 (96)
T ss_dssp -HHHHHHHHHHHHHTTB-TT-----TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCC-CccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHH
Confidence 44567777777777775322 234444333 458999999999999999999999999999999999999999998
Q ss_pred cCC
Q 033119 122 SHP 124 (127)
Q Consensus 122 ~~~ 124 (127)
+..
T Consensus 86 ~~r 88 (96)
T PF14573_consen 86 QER 88 (96)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 21
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.75 E-value=6.3e-08 Score=60.96 Aligned_cols=74 Identities=26% Similarity=0.311 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCc-cccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcC
Q 033119 49 SEVTDRVISVVKNFQKVDPSK-VTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123 (127)
Q Consensus 49 ~~I~~~I~~il~~~l~i~~~~-I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~ 123 (127)
..+...+...+...++..... ++.+.+|. ++|+||+..+++...+++.|++.++..++....|+..+++++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPFR-DLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCHH-HcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 456777888888888776655 48888997 899999999999999999999999999998999999999999865
No 22
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.71 E-value=3.6e-08 Score=96.73 Aligned_cols=81 Identities=19% Similarity=0.331 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhC--CcCCccccccCCcHHHHHHHHH
Q 033119 44 SFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFG--FEIPDNEADKISTINMAVDFIA 121 (127)
Q Consensus 44 ~~M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefg--i~I~~~~l~~~~Tv~~Lv~~I~ 121 (127)
+..+..++.+.+.+++++.+|++.+.++++.+|.+|||+||++.+|++..++++|+ .+++++++.++.|++++++|+.
T Consensus 1301 ~~~~~~~v~~~vl~vvae~tgyp~e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~ 1380 (2582)
T TIGR02813 1301 SSTDLIQIQNVMLEVVADKTGYPTEMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQ 1380 (2582)
T ss_pred CCccHHHHHHHHHHHHHHHhCCCHHHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHh
Confidence 34577999999999999999999999999999999999999999999999999999 8899999999999999999998
Q ss_pred cCC
Q 033119 122 SHP 124 (127)
Q Consensus 122 ~~~ 124 (127)
.+.
T Consensus 1381 ~~~ 1383 (2582)
T TIGR02813 1381 SKV 1383 (2582)
T ss_pred hcc
Confidence 765
No 23
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.39 E-value=8.8e-07 Score=77.10 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhhCCC-CCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCC
Q 033119 49 SEVTDRVISVVKNFQKVD-PSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHP 124 (127)
Q Consensus 49 ~~I~~~I~~il~~~l~i~-~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~ 124 (127)
..+.+.+...++++++.+ ++.++++.+|. ++|+||++.++|...|++.||+.+|...+.+..|+..+++++.+.+
T Consensus 544 ~~~~~~v~~~~a~vl~~~~~~~i~~~~~f~-~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~ 619 (705)
T PRK06060 544 RLVVDAVCAEAAKMLGEPDPWSVDQDLAFS-ELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAEL 619 (705)
T ss_pred HHHHHHHHHHHHHHhCCCChhhCCCCCChh-hcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHh
Confidence 345677888888889885 56799999997 9999999999999999999999999999999999999999998764
No 24
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.21 E-value=3.3e-06 Score=78.38 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcC
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~ 123 (127)
....+.+.+.+++.++++.+.++++.+++|+ ++|.|||..+++...|++.||+.++..++.+..|+.+++++|.+.
T Consensus 845 ~~~~~~~~l~~~~~~vl~~~~~~i~~~~~ff-~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~ 920 (1389)
T TIGR03443 845 EFTETEREIRDLWLELLPNRPATISPDDSFF-DLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRL 920 (1389)
T ss_pred CCCHHHHHHHHHHHHHhCCCccccCcCcchh-hcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhh
Confidence 4457888899999999998877899999998 999999999999999999999999999999999999999998754
No 25
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.07 E-value=8.9e-06 Score=74.67 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcC
Q 033119 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~ 123 (127)
.....+++.+.++++++++++ .++.+++|+ ++|.|||..+++...|++.||+.++..++....|+.+++++|.+.
T Consensus 974 ~~~~~~e~~l~~~~~~~l~~~--~~~~~~~ff-~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 974 APKTGTETIIAAAFSSLLGCD--VVDADADFF-ALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCCCcCHH-HcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 355678889999999999986 788999998 999999999999999999999999999999999999999999765
No 26
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=97.99 E-value=1.6e-05 Score=78.76 Aligned_cols=79 Identities=19% Similarity=0.370 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhC--CcCCccccccCCcHHHHHHHHHcC
Q 033119 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFG--FEIPDNEADKISTINMAVDFIASH 123 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefg--i~I~~~~l~~~~Tv~~Lv~~I~~~ 123 (127)
.+..++.+.+.+++++.+|.+.+.++++.+|..|||+||+..++++..++++|+ .+++++++..+.|++++++|+...
T Consensus 1207 ~~~~~~~~~~l~vvae~tgyp~e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~~ 1286 (2582)
T TIGR02813 1207 VNDSAIQQVMMEVVAEKTGYPTEMLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQSK 1286 (2582)
T ss_pred cchhHHHHHHHHHHHhhccCChHhcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhccc
Confidence 466789999999999999999999999999999999999999999999999998 678888899999999999999765
Q ss_pred C
Q 033119 124 P 124 (127)
Q Consensus 124 ~ 124 (127)
.
T Consensus 1287 ~ 1287 (2582)
T TIGR02813 1287 V 1287 (2582)
T ss_pred c
Confidence 4
No 27
>PRK12467 peptide synthase; Provisional
Probab=97.81 E-value=4e-05 Score=78.04 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHc
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIAS 122 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~ 122 (127)
+++++++.+.++++++++++ .+..+++|+ ++|.|||.+++|+..+++.||++++..++....|+.++++++..
T Consensus 3602 p~~~~e~~l~~i~~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3602 PRSEVEQQLAAIWADVLGVE--QVGVTDNFF-ELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCCCcchh-cccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 55688899999999999986 589999998 99999999999999999999999999999999999999999975
No 28
>PRK05691 peptide synthase; Validated
Probab=97.77 E-value=5e-05 Score=77.74 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcC
Q 033119 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~ 123 (127)
.+++++++.+.++.+++++++ .+..+++|+ ++|.|||.+++|+..+++.||+.++..++....|+.++++++...
T Consensus 4237 ~p~~~~e~~l~~iw~~vL~~~--~i~~~d~Ff-~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4237 APRNELEQTLATIWADVLKVE--RVGVHDNFF-ELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--cCCCCCchh-hcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 356789999999999999975 689999998 999999999999999999999999999999999999999999753
No 29
>PRK05691 peptide synthase; Validated
Probab=97.73 E-value=7.3e-05 Score=76.59 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcC
Q 033119 44 SFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123 (127)
Q Consensus 44 ~~M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~ 123 (127)
...+.+++.+.|.++++++++++ .+..+.+|. ++|.|||.++++...++++||+.++..++....|+.++++++..+
T Consensus 580 ~~~~~~~~e~~l~~~~~~vL~~~--~i~~~~~ff-~lGgdSL~a~~l~~~l~~~~g~~l~v~~i~~~~ti~~la~~l~~~ 656 (4334)
T PRK05691 580 TAASGDELQARIAAIWCEQLKVE--QVAADDHFF-LLGGNSIAATQVVARLRDELGIDLNLRQLFEAPTLAAFSAAVARQ 656 (4334)
T ss_pred ccCCcchHHHHHHHHHHHHhCCC--CCCcCCchh-hcccchHHHHHHHHHHHHHhCCcCchhhhhcccchHHHHHHHHHh
Confidence 34566788999999999999975 789999998 999999999999999999999999999999999999999998764
No 30
>PRK12316 peptide synthase; Provisional
Probab=97.66 E-value=8.8e-05 Score=76.97 Aligned_cols=74 Identities=24% Similarity=0.412 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcC
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~ 123 (127)
+.+++.+.+.++++++++++ .|..+++|+ ++|.|||.+++|...|+++||++++..++....|+++|++++...
T Consensus 5069 ~~~~~e~~l~~i~~~vL~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~ 5142 (5163)
T PRK12316 5069 PRSELEQQVAAIWAEVLQLE--RVGLDDNFF-ELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAA 5142 (5163)
T ss_pred CCcHHHHHHHHHHHHHhCCC--CCCCCCChh-hccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhc
Confidence 45678899999999999875 688999998 999999999999999999999999999999999999999999754
No 31
>PRK12467 peptide synthase; Provisional
Probab=97.65 E-value=8.9e-05 Score=75.61 Aligned_cols=75 Identities=20% Similarity=0.341 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcC
Q 033119 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~ 123 (127)
.+..++++.+.++++++++++ .+..+++|+ ++|.|||.+++++..+++.||+.++..++.+..|+.++++++...
T Consensus 1026 ~p~~~~e~~l~~i~~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1026 APQTELEKRLAAIWADVLKVE--RVGLTDNFF-ELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCCCCCch-hccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 345678899999999999875 689999998 999999999999999999999999999999999999999998754
No 32
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.60 E-value=0.00015 Score=47.22 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=57.4
Q ss_pred HHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCCC
Q 033119 55 VISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHPQ 125 (127)
Q Consensus 55 I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~~ 125 (127)
+.+.+.+.++.++++++++.+|. +.|+||+-+|.++....+ =|..|...++....|++.--+.+..+..
T Consensus 3 Lr~~~~~Ll~e~~~~l~dqeNLi-~~GLDSiR~M~L~~~wR~-~G~~i~F~~La~~PTl~aW~qLl~~~~~ 71 (74)
T COG3433 3 LREQIAELLGESVEELDDQENLI-DYGLDSIRMMALLERWRK-RGADIDFAQLAANPTLAAWWQLLSTRSK 71 (74)
T ss_pred HHHHHHHHHcCChhhcCchhhHH-HhchhHHHHHHHHHHHHH-cCCcccHHHHHhCccHHHHHHHHHhccc
Confidence 34555666666888999999997 999999999999998865 4888899999999999988888876654
No 33
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.47 E-value=0.0003 Score=48.94 Aligned_cols=59 Identities=22% Similarity=0.416 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhhCC----CCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCcccc
Q 033119 49 SEVTDRVISVVKNFQKV----DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEA 107 (127)
Q Consensus 49 ~~I~~~I~~il~~~l~i----~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l 107 (127)
+++.++|.+.+.+..|. ....++++++|.++||++.-++.+++....++|+|++..=++
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~~ 64 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFDF 64 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccCH
Confidence 67899999999999876 577899999998899999999999999999999999765553
No 34
>PRK12316 peptide synthase; Provisional
Probab=97.44 E-value=0.0002 Score=74.52 Aligned_cols=74 Identities=23% Similarity=0.347 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcC
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASH 123 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~ 123 (127)
+.+.+++.+.++++++++++ .+..+++|+ ++|.|||.+++|+..+++.||+.++..++.+..|+.+++..+...
T Consensus 2513 p~~~~e~~l~~iw~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~ 2586 (5163)
T PRK12316 2513 PQEGLEQRLAAIWQAVLKVE--QVGLDDHFF-ELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESG 2586 (5163)
T ss_pred CCCHHHHHHHHHHHHHhCCC--ccCCCCchh-hhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhh
Confidence 45678889999999999975 688899998 999999999999999999999999999999999999999988654
No 35
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=96.35 E-value=0.0017 Score=61.23 Aligned_cols=55 Identities=33% Similarity=0.504 Sum_probs=47.6
Q ss_pred HHHHHHHhhhCC-CCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCcccccc
Q 033119 54 RVISVVKNFQKV-DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADK 109 (127)
Q Consensus 54 ~I~~il~~~l~i-~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~ 109 (127)
.+...|+.++|+ |...+.++++|. |||+|||+.+|+-..+|.+|++.+...++.+
T Consensus 2008 dLiatiA~IlGlrD~~~vn~~asLa-DLGlDSLMsvEikQtLER~~dlVLS~qEiRq 2063 (2376)
T KOG1202|consen 2008 DLIATIAHILGLRDLKAVNDDASLA-DLGLDSLMSVEIKQTLEREFDLVLSAQEIRQ 2063 (2376)
T ss_pred cHHHHHHHHhcchhHhhccCCCchh-hccchhhhhHHHHHHHhhhhceeeeHHHHHH
Confidence 455666788887 567899999996 9999999999999999999999999888754
No 36
>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit. L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion
Probab=94.80 E-value=0.22 Score=34.55 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCcc-ccCCccccccCCCh-hhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHc
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKV-TVNAHFQNDLGLDS-LDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIAS 122 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I-~~dt~l~~dLGlDS-L~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~ 122 (127)
+.+++.+.+.+...+.++.+.... ..+..+. ++.++. -.=-.++.++.+.+|..||+..+-.+.|++++++|+..
T Consensus 5 ~~e~l~~~i~e~~~e~~~~~~~~~~~~~~~~~-~~~l~D~~~KF~~lKrl~~~tGh~ipD~~L~~~~T~~dl~~~~~~ 81 (112)
T PF10501_consen 5 PPEDLEEIIEESAKEVLGAEGFGSQSWNNDWL-DISLEDLQLKFAFLKRLQQLTGHRIPDSKLHSIHTVGDLLNFYEK 81 (112)
T ss_pred CHHHHHHHHHHHHHHHhcccccccccCCcccc-ccccCCHHHHHHHHHHHHHHHCCCCCcHHHHhcCCHHHHHHHHHH
Confidence 457788888888888887643332 2333332 444433 35568999999999999999999999999999999954
No 37
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=93.88 E-value=0.31 Score=40.33 Aligned_cols=79 Identities=27% Similarity=0.314 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHhhhCCC---------CCccccCCcc-ccccCCChhhHHHHHHHHHHHhCCc-CCccc-cccCCcH
Q 033119 46 LDKSEVTDRVISVVKNFQKVD---------PSKVTVNAHF-QNDLGLDSLDTVEVVMALEEEFGFE-IPDNE-ADKISTI 113 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l~i~---------~~~I~~dt~l-~~dLGlDSL~~veLi~~lEeefgi~-I~~~~-l~~~~Tv 113 (127)
.+.+.|...+..+|...+..- ...+..|+.+ .+.+|+||+..++|..++-+.|++. -..++ +....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (386)
T TIGR02372 3 LDAEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTGTEDYLLVRRRI 82 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcccccchhhhhhhhccH
Confidence 467788888888888775321 1237778877 4579999999999999999999993 23333 3457889
Q ss_pred HHHHHHHHcCC
Q 033119 114 NMAVDFIASHP 124 (127)
Q Consensus 114 ~~Lv~~I~~~~ 124 (127)
++.++.|.+.-
T Consensus 83 ~~~~~~~~~~~ 93 (386)
T TIGR02372 83 GEWVDLIAHHS 93 (386)
T ss_pred HHHHHHHHhcC
Confidence 99999887653
No 38
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=86.74 E-value=1.2 Score=39.11 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhC-CcCCccccccCCcHHHHHHHHHcCC
Q 033119 52 TDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFG-FEIPDNEADKISTINMAVDFIASHP 124 (127)
Q Consensus 52 ~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefg-i~I~~~~l~~~~Tv~~Lv~~I~~~~ 124 (127)
.++++.+...++. ..-++.++++|+ .-|..|.+.+.|+-++...+| .++..+++..-.|+++.++.+..++
T Consensus 324 ~~~~~~iw~~il~-kv~~v~~~tdff-~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir~l 395 (881)
T KOG2452|consen 324 AEAVRSVWQRILP-KVLEVEDSTDFF-KSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKL 395 (881)
T ss_pred HHHHHHHHHHhcc-hheeecccchHh-hcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHHHh
Confidence 4556666655543 123688899998 999999999999999999888 8999999999999999999988775
No 39
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=84.13 E-value=3.1 Score=24.97 Aligned_cols=40 Identities=23% Similarity=0.523 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCcc
Q 033119 48 KSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDN 105 (127)
Q Consensus 48 ~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~ 105 (127)
.+++...|.+++. .-+++++..=++...||+.||+.+..-
T Consensus 2 d~~i~~~i~~iL~------------------~~dl~~vT~k~vr~~Le~~~~~dL~~~ 41 (54)
T PF08766_consen 2 DEEIREAIREILR------------------EADLDTVTKKQVREQLEERFGVDLSSR 41 (54)
T ss_dssp HHHHHHHHHHHHT------------------TS-GGG--HHHHHHHHHHH-SS--SHH
T ss_pred HHHHHHHHHHHHH------------------hCCHhHhhHHHHHHHHHHHHCCCcHHH
Confidence 4667777777764 235678899999999999999988743
No 40
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.42 E-value=1.6 Score=41.02 Aligned_cols=54 Identities=26% Similarity=0.134 Sum_probs=46.9
Q ss_pred CccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHc
Q 033119 68 SKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIAS 122 (127)
Q Consensus 68 ~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~ 122 (127)
..++++++|. ++|.||+.++.++..+.+.+.++.|..-..+..|+..+..-+..
T Consensus 614 ~~~s~d~~fF-~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~ 667 (1032)
T KOG1178|consen 614 AIVSPDSSFF-QLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIR 667 (1032)
T ss_pred cccCCCcchh-hhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhh
Confidence 4688899998 99999999999999999999999999988888888777655443
No 41
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=67.37 E-value=12 Score=24.08 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHhh-hCC--CCCccccCCccccccCCChhhHHHHHHHHHHHh
Q 033119 44 SFLDKSEVTDRVISVVKNF-QKV--DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEF 98 (127)
Q Consensus 44 ~~M~~~~I~~~I~~il~~~-l~i--~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeef 98 (127)
..+++.++...+++.+.+. +.- +...+..|..|.+-+|-|++.+.++...|...|
T Consensus 18 ~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl 75 (77)
T smart00151 18 PEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHL 75 (77)
T ss_pred CcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHc
Confidence 6789999999999999865 322 223477787777778888888888887776654
No 42
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=47.25 E-value=23 Score=22.06 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHhhhC--CCCCccccCCccccccCCChhhHHHHHHHHHHHhCC
Q 033119 47 DKSEVTDRVISVVKNFQK--VDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGF 100 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~--i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi 100 (127)
+.+...+.|..+|.+.-+ +...+ +...+|+++-.+-.++..|+++=-|
T Consensus 3 ~~~~~~~~IL~~L~~~g~~~~ta~e------La~~lgl~~~~v~r~L~~L~~~G~V 52 (68)
T smart00550 3 TQDSLEEKILEFLENSGDETSTALQ------LAKNLGLPKKEVNRVLYSLEKKGKV 52 (68)
T ss_pred CchHHHHHHHHHHHHCCCCCcCHHH------HHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 567778888888877643 43333 3368999999999999999886333
No 43
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=45.20 E-value=52 Score=20.83 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=21.5
Q ss_pred HHHHHHHhCCcCCccccccCCcHHHHHHHHHcCC
Q 033119 91 VMALEEEFGFEIPDNEADKISTINMAVDFIASHP 124 (127)
Q Consensus 91 i~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~ 124 (127)
+..+++.||++++.+ +..|++.++-....+.
T Consensus 16 l~~l~~~~~~~l~~~---~~~Tl~G~i~~~l~~i 46 (81)
T PF03471_consen 16 LDDLNELLGLDLPEE---DYDTLGGLILEQLGRI 46 (81)
T ss_dssp HHHHHHHHTS-TTTT---TTSBHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCCCcc---chhhHHHHHHHHcCCC
Confidence 457889999998885 4568888866555443
No 44
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=36.91 E-value=83 Score=20.69 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhCCc
Q 033119 88 VEVVMALEEEFGFE 101 (127)
Q Consensus 88 veLi~~lEeefgi~ 101 (127)
-+|..+|.++||-+
T Consensus 23 ~~L~~ai~~~FG~~ 36 (78)
T PF10678_consen 23 EELKAAIIEKFGED 36 (78)
T ss_pred HHHHHHHHHHhCCC
Confidence 34444444444443
No 45
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=36.48 E-value=83 Score=20.70 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCCcCCccc-cccCCcHHHHHHHHHcC
Q 033119 88 VEVVMALEEEFGFEIPDNE-ADKISTINMAVDFIASH 123 (127)
Q Consensus 88 veLi~~lEeefgi~I~~~~-l~~~~Tv~~Lv~~I~~~ 123 (127)
-+|..+|+++||-+--.-. -.+-.|.++|++|+.++
T Consensus 21 ~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~k 57 (77)
T TIGR03853 21 ESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKK 57 (77)
T ss_pred HHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHC
Confidence 3444445555554322221 01223445555555444
No 46
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=31.46 E-value=40 Score=20.56 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhCCcCCcccc
Q 033119 86 DTVEVVMALEEEFGFEIPDNEA 107 (127)
Q Consensus 86 ~~veLi~~lEeefgi~I~~~~l 107 (127)
.+-++...+++.||++++++|+
T Consensus 58 ~a~~~~~~l~~~~~i~~~~~Ei 79 (89)
T PF00874_consen 58 IAKEICERLEKRYGITLPDDEI 79 (89)
T ss_dssp HHHHHHHHHHHHHTS-S-HHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHH
Confidence 3457788899999999999985
No 47
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=30.01 E-value=22 Score=26.44 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCcCCccccccCCcHHHHHHHHHcCCC
Q 033119 53 DRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISTINMAVDFIASHPQ 125 (127)
Q Consensus 53 ~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~I~~~~l~~~~Tv~~Lv~~I~~~~~ 125 (127)
+.|.+.+.+.+++.+.+.++|-.| |+.-++=+-.+...--+.|+++.+.. .|.+.+.+.+.+..+
T Consensus 94 ~~l~~~l~~~lgi~~gett~DG~f-------tl~~v~ClGaC~~AP~vmind~~~~~-lt~e~l~eil~~~~~ 158 (160)
T COG1905 94 EALLKALEKKLGIKPGETTADGKF-------TLEPVECLGACGQAPVVMINDDVYGR-LTPEKLEEILEKLKA 158 (160)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeE-------EEeeeeeecccccCCEEEECCchhcc-CCHHHHHHHHHHHhc
Confidence 456666777889999999988877 34444444455555555566665554 677777776665543
No 48
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=29.16 E-value=7.7 Score=24.87 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHhh-hCC--CCCccccCCccccccCCChhhHHHHHHHH
Q 033119 44 SFLDKSEVTDRVISVVKNF-QKV--DPSKVTVNAHFQNDLGLDSLDTVEVVMAL 94 (127)
Q Consensus 44 ~~M~~~~I~~~I~~il~~~-l~i--~~~~I~~dt~l~~dLGlDSL~~veLi~~l 94 (127)
..+++.++...|++.+.+. +-- +...|..|..|..-+|-|++.+-++...+
T Consensus 18 ~~~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~~~~v~~~~i~~~l 71 (76)
T PF02201_consen 18 DELSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFGKDSVNFFEIPKLL 71 (76)
T ss_dssp SCEEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHHTSECSEEETTHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhCCCeecHhhHHHHH
Confidence 3489999999999999876 321 23357788888766777776655444444
No 49
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=27.28 E-value=70 Score=19.20 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccc
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVT 71 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~ 71 (127)
.+.++.+.|.+.+.+.+|++++++.
T Consensus 16 qk~~l~~~it~~l~~~lg~p~~~v~ 40 (64)
T PRK01964 16 KIKNLIREVTEAISATLDVPKERVR 40 (64)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEE
Confidence 5678888999999999999877654
No 50
>PF10850 DUF2653: Protein of unknown function (DUF2653); InterPro: IPR020516 This entry contains proteins with no known function.
Probab=26.61 E-value=67 Score=21.79 Aligned_cols=57 Identities=23% Similarity=0.447 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCC-------------ChhhHHHHH-HHHHHHhCCcC
Q 033119 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGL-------------DSLDTVEVV-MALEEEFGFEI 102 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGl-------------DSL~~veLi-~~lEeefgi~I 102 (127)
++.++|...|+-.+++.-++.|+++.-.....++.|. .+..+++-+ ..+++++++..
T Consensus 5 l~EqeIiNAvCl~~A~~~~i~P~dVeVeL~yDdd~GFsAEv~~ngr~q~l~~~nlieAIr~~l~~~~~~~p 75 (91)
T PF10850_consen 5 LSEQEIINAVCLHIAERKGIQPEDVEVELMYDDDYGFSAEVWVNGRSQYLIEANLIEAIRQYLEEEYNMDP 75 (91)
T ss_pred ccHHHHHHHHHHHHHHhcCCCcccEEEEEEEecCCCeeEEEEECCeEEEEchhhHHHHHHHHHHHHhCCCc
Confidence 5788999999999999999988887655555444443 344444433 44566666653
No 51
>PF14230 DUF4333: Domain of unknown function (DUF4333)
Probab=26.58 E-value=87 Score=20.17 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCCCccc
Q 033119 43 GSFLDKSEVTDRVISVVKNFQKVDPSKVT 71 (127)
Q Consensus 43 ~~~M~~~~I~~~I~~il~~~l~i~~~~I~ 71 (127)
.+.++++++.+.|.+.|.+..|..+..++
T Consensus 17 ~~~ld~~~ve~~v~~~L~~~~G~~~~sV~ 45 (80)
T PF14230_consen 17 KPVLDKAQVEQGVAQVLTEQYGVTPVSVT 45 (80)
T ss_pred CceECHHHHHHHHHHHHHHhhCCCCCEeE
Confidence 45899999999999999999988655444
No 52
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=26.38 E-value=29 Score=27.15 Aligned_cols=97 Identities=23% Similarity=0.276 Sum_probs=59.3
Q ss_pred hhHHHHHhhhhhcccc-ccCCCCCCccccchhhhhhhhcccCCCCCHHHHHHHHHHHHHhhhCCCCCccccCCccccc--
Q 033119 3 AARGALLKYLRVNVAT-VQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQND-- 79 (127)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~d-- 79 (127)
++|=.|++=+++.|-- |...||.++|--...|+|+-++...--+- +-=+-.+.+.+++.+|++...+-.+..+++.
T Consensus 65 ~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~li-SGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~G 143 (227)
T KOG1615|consen 65 AARLSLLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLI-SGGFRQLIEPVAEQLGIPKSNIYANELLFDKDG 143 (227)
T ss_pred HHHHHHhcccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEE-cCChHHHHHHHHHHhCCcHhhhhhheeeeccCC
Confidence 4677788888888776 77778899999999999996653211110 1113456667778888876554444322211
Q ss_pred --cC-------CChhhHHHHHHHHHHHhCC
Q 033119 80 --LG-------LDSLDTVEVVMALEEEFGF 100 (127)
Q Consensus 80 --LG-------lDSL~~veLi~~lEeefgi 100 (127)
+| .||--=-+.+..+.+-+..
T Consensus 144 k~~gfd~~~ptsdsggKa~~i~~lrk~~~~ 173 (227)
T KOG1615|consen 144 KYLGFDTNEPTSDSGGKAEVIALLRKNYNY 173 (227)
T ss_pred cccccccCCccccCCccHHHHHHHHhCCCh
Confidence 12 3444455677777664443
No 53
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=25.60 E-value=41 Score=16.08 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=7.1
Q ss_pred ccCCCCCCccc
Q 033119 19 VQRNPSPFSLS 29 (127)
Q Consensus 19 ~~~~~~~~~~~ 29 (127)
.||.||-++|-
T Consensus 1 lqr~p~gftpf 11 (19)
T PF06753_consen 1 LQRRPPGFTPF 11 (19)
T ss_pred CCccCCCCCcc
Confidence 36777776653
No 54
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=25.21 E-value=80 Score=18.55 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccc
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVT 71 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~ 71 (127)
.+.++.+.|.+.+.+.+|++++.+.
T Consensus 16 qk~~l~~~it~~l~~~~~~p~~~v~ 40 (61)
T PRK02220 16 QLKALVKDVTAAVSKNTGAPAEHIH 40 (61)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEE
Confidence 5678888899999999998876554
No 55
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=24.55 E-value=45 Score=21.69 Aligned_cols=17 Identities=41% Similarity=0.835 Sum_probs=11.4
Q ss_pred HHHHHHHHHhCCcCCcc
Q 033119 89 EVVMALEEEFGFEIPDN 105 (127)
Q Consensus 89 eLi~~lEeefgi~I~~~ 105 (127)
+=+.++|+++|+.+|.+
T Consensus 5 ~~I~~~E~~lg~~LP~~ 21 (130)
T PF09346_consen 5 EEIQELEEKLGVRLPDD 21 (130)
T ss_dssp HHHHHHHHHHTS---HH
T ss_pred HHHHHHHHHhCCCCcHH
Confidence 44678999999999976
No 56
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=24.06 E-value=1e+02 Score=17.66 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccc
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVT 71 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~ 71 (127)
.+.++.+.|.+.+.+.+|.+++.+.
T Consensus 15 qk~~l~~~i~~~l~~~~g~~~~~v~ 39 (58)
T cd00491 15 QKRELIERVTEAVSEILGAPEATIV 39 (58)
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEE
Confidence 4667888888888999998876543
No 57
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=23.41 E-value=1.1e+02 Score=18.15 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=21.2
Q ss_pred ccCCChhhHHHHHHHHHHHhCCcCCc
Q 033119 79 DLGLDSLDTVEVVMALEEEFGFEIPD 104 (127)
Q Consensus 79 dLGlDSL~~veLi~~lEeefgi~I~~ 104 (127)
.+|+.-=.+-.-+..+|+.||+.+-.
T Consensus 22 ~l~is~~~vs~~i~~LE~~lg~~Lf~ 47 (60)
T PF00126_consen 22 ELGISQSAVSRQIKQLEEELGVPLFE 47 (60)
T ss_dssp HCTSSHHHHHHHHHHHHHHHTS-SEE
T ss_pred HhhccchHHHHHHHHHHHHhCCeEEE
Confidence 67888888889999999999998643
No 58
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=23.17 E-value=67 Score=20.16 Aligned_cols=18 Identities=28% Similarity=0.695 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCcCCccc
Q 033119 89 EVVMALEEEFGFEIPDNE 106 (127)
Q Consensus 89 eLi~~lEeefgi~I~~~~ 106 (127)
+-+.++|+++|+++|.+=
T Consensus 5 ~~i~~~e~~lg~~LP~~y 22 (129)
T smart00860 5 EEIAELEKKLGIKLPEDY 22 (129)
T ss_pred HHHHHHHHHHCCCCCHHH
Confidence 457889999999999874
No 59
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=23.01 E-value=85 Score=18.44 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCcc
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKV 70 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I 70 (127)
.+.++.+.+.+.+.+.+|.+++.+
T Consensus 15 ~K~~l~~~it~~~~~~lg~~~~~i 38 (60)
T PF01361_consen 15 QKRELAEAITDAVVEVLGIPPERI 38 (60)
T ss_dssp HHHHHHHHHHHHHHHHHTS-GGGE
T ss_pred HHHHHHHHHHHHHHHHhCcCCCeE
Confidence 456788889999999999876654
No 60
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=22.87 E-value=1.1e+02 Score=17.96 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccc
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVT 71 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~ 71 (127)
.+..+...|.+.+.+.+|.+++.+.
T Consensus 16 qK~~l~~~it~~l~~~lg~~~~~v~ 40 (63)
T TIGR00013 16 QKRQLIEGVTEAMAETLGANLESIV 40 (63)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEE
Confidence 4667888888889999998877544
No 61
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.97 E-value=97 Score=18.22 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCcc
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKV 70 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I 70 (127)
.+.++.+.|.+.+.+.+|++++.+
T Consensus 16 qk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 16 QKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHE
Confidence 567888899999999999887654
No 62
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=21.79 E-value=1.5e+02 Score=20.13 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHH------HHHHHHHHHhCCcCCcccc
Q 033119 46 LDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTV------EVVMALEEEFGFEIPDNEA 107 (127)
Q Consensus 46 M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~v------eLi~~lEeefgi~I~~~~l 107 (127)
|+..........-|.++.++.+ .-..+|. .||+.|+.-+ +|...+++..|...++=.+
T Consensus 1 m~p~k~~~~~~~~L~~iP~IG~---a~a~DL~-~LGi~s~~~L~g~dP~~Ly~~lc~~~G~~~DpCvl 64 (93)
T PF11731_consen 1 MNPAKVKRAGLSDLTDIPNIGK---ATAEDLR-LLGIRSPADLKGRDPEELYERLCALTGQRHDPCVL 64 (93)
T ss_pred CChHHHHHHHHHHHhcCCCccH---HHHHHHH-HcCCCCHHHHhCCCHHHHHHHHHHHcCCcCCcHHH
Confidence 4455555555555556655432 1223665 8999998765 8999999999988776444
No 63
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=21.21 E-value=1.3e+02 Score=26.73 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCCCccccCCccccccCCChhhHHHHHHHHHHHhCCc-----------------CCcc
Q 033119 43 GSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFE-----------------IPDN 105 (127)
Q Consensus 43 ~~~M~~~~I~~~I~~il~~~l~i~~~~I~~dt~l~~dLGlDSL~~veLi~~lEeefgi~-----------------I~~~ 105 (127)
-++|+.+.+.+++.++..++-.-+..--..+.+...|...|.+. +=+..||+.|..- +|.-
T Consensus 22 ~~~~~~~~~~~~i~~L~~~l~~~~~~YY~~~~p~IsD~eYD~L~--~eL~~LE~~~p~~~~~~spt~~vg~kv~H~~PMl 99 (562)
T PRK08097 22 CPDWSPARAQEEIAALQQQLAQWDDAYWRQGKSEVDDEVYDQLR--ARLTQWQRCFGGPEPRDVPLPPLNGKVLHPVAHT 99 (562)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHH--HHHHHHHHhCcCcCCCCCCCCCCCCceECCCCcc
Confidence 36788888888776665543211111111222222355555443 6677788887532 2444
Q ss_pred ccccCCcHHHHHHHHHcC
Q 033119 106 EADKISTINMAVDFIASH 123 (127)
Q Consensus 106 ~l~~~~Tv~~Lv~~I~~~ 123 (127)
.+++..+.+++.+|+.+.
T Consensus 100 SL~k~~s~eel~~w~~~~ 117 (562)
T PRK08097 100 GVKKLADKQALARWMAGR 117 (562)
T ss_pred cccccCCHHHHHHHHhhc
Confidence 566788999999998753
No 64
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=20.89 E-value=1.1e+02 Score=20.60 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccc
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVT 71 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~ 71 (127)
.+.++...|.+.+.+.+|++++.+-
T Consensus 73 ~k~~l~~~i~~~l~~~lgi~~~rv~ 97 (116)
T PTZ00397 73 NNSSIAAAITKILASHLKVKSERVY 97 (116)
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEE
Confidence 3458899999999999999988654
No 65
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.03 E-value=1.3e+02 Score=17.90 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCccc
Q 033119 47 DKSEVTDRVISVVKNFQKVDPSKVT 71 (127)
Q Consensus 47 ~~~~I~~~I~~il~~~l~i~~~~I~ 71 (127)
.+.++.+.|.+.+.+.++.+++.++
T Consensus 16 qK~~L~~~it~a~~~~~~~p~~~v~ 40 (60)
T PRK02289 16 QKNALAREVTEVVSRIAKAPKEAIH 40 (60)
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEE
Confidence 5677888888999999998776554
Done!