BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033120
         (126 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54CG0|ABCGA_DICDI ABC transporter G family member 10 OS=Dictyostelium discoideum
           GN=abcG10 PE=3 SV=1
          Length = 1466

 Score = 31.2 bits (69), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 21  FKKSRRTKSLTGTS----LASIESLSMPLVQEVVLSADIRCSECQKRVADMMSKLNETES 76
           F  S+++ +L G      L+  E   + + + +V SA I C +C  R  D  S L+  +S
Sbjct: 273 FGISKQSDTLVGNEFIRGLSGGERKRLTITEAMVSSASITCYDCSTRGLDAASALDYAKS 332

Query: 77  V-LVNVSEKKVTLTSRY 92
           + +++ +  K T+ S Y
Sbjct: 333 IRIMSDTLHKTTIASFY 349


>sp|P55125|HLYD_PASSP Leukotoxin secretion protein D OS=Pasteurella haemolytica-like sp.
           (strain 5943B) GN=lktD PE=3 SV=1
          Length = 478

 Score = 30.4 bits (67), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 50  VLSADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRYPV-VVEVSKRQITAVRR 108
           +LS + +  E Q  +A   SKLNE ES L+NV E+   +T  +   V+E  K+ I   R+
Sbjct: 253 LLSQENKAIEAQNELAVYRSKLNELESDLLNVKEELELITQFFKSDVLEKLKQHIENERQ 312

Query: 109 NPLQ 112
             L+
Sbjct: 313 LQLE 316


>sp|Q26519|TPM_SCHJA Tropomyosin OS=Schistosoma japonicum PE=2 SV=1
          Length = 284

 Score = 28.9 bits (63), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 53  ADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRYPVV---VEVSKRQIT 104
           A I C E Q+ + + M+KL ETE    N   +   +T R  ++   +EVS  ++T
Sbjct: 53  AQIDCDEVQETLQEQMNKLEETEKRATNAEAQVAAMTRRIRLLEEDLEVSSSRLT 107


>sp|Q54T46|XPP3_DICDI Probable Xaa-Pro aminopeptidase 3 OS=Dictyostelium discoideum
           GN=xpnpep3 PE=2 SV=1
          Length = 518

 Score = 28.9 bits (63), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 12  KNKELPGIEFK--KSRRTKSLTGTSLASIESLSMPLVQEVVLSADIRCSECQKRVADMMS 69
           KN+   GI+ K  K RR K +    + S+  +  P   E ++S DI  S  Q    + ++
Sbjct: 78  KNEITKGIKMKEFKDRREKLMKNFPIGSVVVIFTP--PEPMMSYDIPWSFRQNTNFNYLT 135

Query: 70  KLNETESVLVNVSEKKV 86
             NE E+VLV V   ++
Sbjct: 136 GFNEPEAVLVLVKTSEL 152


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.126    0.326 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,362,183
Number of Sequences: 539616
Number of extensions: 998637
Number of successful extensions: 3011
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2999
Number of HSP's gapped (non-prelim): 21
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)