Query 033120
Match_columns 126
No_of_seqs 121 out of 278
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 10:03:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1603 Copper chaperone [Inor 99.5 2.2E-13 4.8E-18 91.3 6.9 52 44-95 2-53 (73)
2 PF00403 HMA: Heavy-metal-asso 99.4 1.3E-12 2.8E-17 82.8 7.4 43 52-94 4-46 (62)
3 COG2608 CopZ Copper chaperone 99.2 5E-11 1.1E-15 79.8 7.1 44 49-92 5-48 (71)
4 KOG4656 Copper chaperone for s 98.7 5.4E-08 1.2E-12 80.1 6.5 48 47-94 7-54 (247)
5 PLN02957 copper, zinc superoxi 98.0 2.5E-05 5.5E-10 62.6 6.8 46 47-92 6-51 (238)
6 PRK10671 copA copper exporting 97.8 4.9E-05 1.1E-09 69.6 7.1 56 47-106 3-59 (834)
7 TIGR00003 copper ion binding p 97.2 0.0022 4.9E-08 35.8 6.3 42 50-91 6-47 (68)
8 COG2217 ZntA Cation transport 97.1 0.00061 1.3E-08 63.1 4.7 42 50-92 6-47 (713)
9 PRK11033 zntA zinc/cadmium/mer 95.8 0.04 8.6E-07 50.7 8.0 41 52-92 59-99 (741)
10 KOG0207 Cation transport ATPas 95.5 0.019 4.1E-07 55.3 4.7 42 53-94 1-42 (951)
11 PRK10671 copA copper exporting 95.0 0.032 7E-07 51.5 4.6 40 52-91 105-144 (834)
12 KOG0207 Cation transport ATPas 94.9 0.04 8.8E-07 53.1 5.1 48 47-94 146-194 (951)
13 TIGR02052 MerP mercuric transp 94.7 0.071 1.5E-06 33.3 4.2 39 52-90 29-67 (92)
14 cd00371 HMA Heavy-metal-associ 88.9 1.8 3.8E-05 21.3 5.0 40 52-91 4-43 (63)
15 PF01883 DUF59: Domain of unkn 87.6 0.89 1.9E-05 29.5 3.5 43 36-79 24-72 (72)
16 PRK13748 putative mercuric red 79.4 4 8.7E-05 35.4 5.1 40 52-91 6-45 (561)
17 PF14437 MafB19-deam: MafB19-l 74.5 4.8 0.0001 31.4 3.8 70 18-88 63-142 (146)
18 PF04972 BON: BON domain; Int 67.5 9.4 0.0002 23.7 3.4 33 62-95 2-37 (64)
19 PF03927 NapD: NapD protein; 67.0 28 0.0006 23.8 5.9 45 61-107 17-61 (79)
20 PRK11023 outer membrane lipopr 59.8 27 0.00059 27.2 5.4 36 60-95 50-88 (191)
21 PF09580 Spore_YhcN_YlaJ: Spor 58.2 34 0.00073 25.5 5.5 36 58-93 74-109 (177)
22 TIGR02945 SUF_assoc FeS assemb 57.9 11 0.00024 25.8 2.6 21 62-82 58-78 (99)
23 PRK11198 LysM domain/BON super 57.8 25 0.00055 26.3 4.7 37 58-94 25-62 (147)
24 PRK10553 assembly protein for 57.6 43 0.00094 23.7 5.6 34 61-94 19-52 (87)
25 TIGR02200 GlrX_actino Glutared 56.0 30 0.00065 21.2 4.2 32 49-82 2-33 (77)
26 TIGR02189 GlrX-like_plant Glut 55.5 26 0.00057 24.3 4.2 34 47-82 8-41 (99)
27 TIGR00489 aEF-1_beta translati 54.9 29 0.00062 24.7 4.4 34 45-80 50-83 (88)
28 PF10934 DUF2634: Protein of u 52.5 31 0.00067 25.0 4.3 39 55-93 65-106 (112)
29 COG2092 EFB1 Translation elong 52.3 12 0.00027 27.1 2.1 23 58-80 61-83 (88)
30 TIGR02190 GlrX-dom Glutaredoxi 52.0 37 0.00081 22.1 4.3 35 47-83 8-42 (79)
31 TIGR03406 FeS_long_SufT probab 52.0 21 0.00046 28.0 3.6 35 48-82 114-154 (174)
32 COG1888 Uncharacterized protei 51.0 22 0.00049 26.2 3.4 29 63-91 23-58 (97)
33 cd02973 TRX_GRX_like Thioredox 50.7 29 0.00064 21.2 3.5 33 49-82 3-39 (67)
34 COG2151 PaaD Predicted metal-s 49.7 17 0.00038 26.9 2.7 33 49-81 51-89 (111)
35 PRK10329 glutaredoxin-like pro 49.5 48 0.0011 22.2 4.6 34 48-83 2-35 (81)
36 COG2966 Uncharacterized conser 49.3 19 0.0004 29.8 3.0 56 63-123 35-98 (250)
37 cd04888 ACT_PheB-BS C-terminal 45.8 25 0.00054 21.9 2.6 34 46-79 40-74 (76)
38 cd03029 GRX_hybridPRX5 Glutare 45.0 59 0.0013 20.4 4.3 34 48-83 2-35 (72)
39 PRK00435 ef1B elongation facto 41.2 25 0.00055 25.0 2.3 23 58-80 61-83 (88)
40 PRK10568 periplasmic protein; 41.0 85 0.0019 24.6 5.5 36 59-94 60-97 (203)
41 TIGR02196 GlrX_YruB Glutaredox 40.5 78 0.0017 18.7 4.3 33 49-83 2-34 (74)
42 PRK11200 grxA glutaredoxin 1; 40.1 90 0.002 20.3 4.8 34 49-83 3-40 (85)
43 cd06464 ACD_sHsps-like Alpha-c 39.3 30 0.00064 21.9 2.3 25 70-94 14-40 (88)
44 cd03027 GRX_DEP Glutaredoxin ( 37.3 94 0.002 19.6 4.4 33 49-83 3-35 (73)
45 PF01206 TusA: Sulfurtransfera 36.6 60 0.0013 20.6 3.4 19 54-72 7-25 (70)
46 TIGR02830 spore_III_AG stage I 36.0 34 0.00074 27.4 2.6 21 60-80 62-82 (186)
47 COG4004 Uncharacterized protei 35.4 38 0.00082 25.0 2.5 23 68-90 36-58 (96)
48 TIGR02194 GlrX_NrdH Glutaredox 35.3 86 0.0019 19.8 4.0 32 50-83 2-33 (72)
49 COG2177 FtsX Cell division pro 35.0 63 0.0014 27.3 4.1 32 48-80 62-93 (297)
50 PRK08223 hypothetical protein; 34.7 21 0.00045 30.2 1.2 16 107-122 268-285 (287)
51 PRK10509 bacterioferritin-asso 34.7 23 0.0005 23.5 1.2 22 50-71 32-53 (64)
52 cd06471 ACD_LpsHSP_like Group 34.1 39 0.00085 22.6 2.3 24 70-93 17-42 (93)
53 TIGR02544 III_secr_YscJ type I 33.1 1.1E+02 0.0023 24.2 4.9 21 61-81 109-129 (193)
54 PF01514 YscJ_FliF: Secretory 31.2 55 0.0012 25.9 3.0 21 61-81 117-137 (206)
55 cd00292 EF1B Elongation factor 30.9 48 0.001 23.4 2.4 20 61-80 64-83 (88)
56 PF11111 CENP-M: Centromere pr 30.3 1.1E+02 0.0025 24.5 4.7 60 19-90 44-103 (176)
57 TIGR00411 redox_disulf_1 small 29.8 1.4E+02 0.003 18.4 4.2 35 49-83 3-41 (82)
58 PF00578 AhpC-TSA: AhpC/TSA fa 29.7 1.5E+02 0.0033 19.6 4.7 45 36-81 18-67 (124)
59 PHA03019 hypothetical protein; 29.5 32 0.0007 24.3 1.3 22 54-75 20-41 (77)
60 cd00298 ACD_sHsps_p23-like Thi 28.5 60 0.0013 19.2 2.2 23 71-93 14-38 (80)
61 PF00736 EF1_GNE: EF-1 guanine 27.5 63 0.0014 22.7 2.5 33 46-80 51-84 (89)
62 PF08002 DUF1697: Protein of u 27.4 1.3E+02 0.0029 22.2 4.4 29 62-91 22-50 (137)
63 cd02976 NrdH NrdH-redoxin (Nrd 27.2 1.4E+02 0.003 17.6 4.2 32 49-82 2-33 (73)
64 COG3062 NapD Uncharacterized p 27.0 1.6E+02 0.0034 21.7 4.5 44 61-106 20-63 (94)
65 PHA03050 glutaredoxin; Provisi 26.8 1.3E+02 0.0029 21.3 4.1 25 48-74 14-38 (108)
66 PRK14054 methionine sulfoxide 26.8 91 0.002 24.5 3.5 46 58-106 10-74 (172)
67 cd03418 GRX_GRXb_1_3_like Glut 26.7 1.6E+02 0.0035 18.1 4.5 33 49-83 2-34 (75)
68 PF02680 DUF211: Uncharacteriz 26.2 58 0.0013 23.9 2.2 30 62-91 20-56 (95)
69 TIGR02892 spore_yabP sporulati 25.6 61 0.0013 22.9 2.1 38 78-122 47-85 (85)
70 PF13462 Thioredoxin_4: Thiore 25.3 98 0.0021 21.6 3.2 35 48-91 15-52 (162)
71 cd03023 DsbA_Com1_like DsbA fa 25.2 63 0.0014 22.0 2.2 22 48-70 8-29 (154)
72 PF15643 Tox-PL-2: Papain fold 25.1 75 0.0016 23.5 2.6 23 54-77 18-40 (100)
73 PRK11152 ilvM acetolactate syn 24.6 2.2E+02 0.0048 19.5 4.7 36 43-80 41-76 (76)
74 PF06738 DUF1212: Protein of u 24.5 1.9E+02 0.004 21.7 4.8 57 62-122 17-75 (193)
75 PRK10743 heat shock protein Ib 24.2 66 0.0014 24.1 2.2 25 70-94 52-78 (137)
76 PF08534 Redoxin: Redoxin; In 24.0 2.1E+02 0.0045 19.9 4.7 36 44-80 28-69 (146)
77 TIGR02183 GRXA Glutaredoxin, G 23.9 1.9E+02 0.0041 19.1 4.3 33 49-82 2-38 (86)
78 PF04324 Fer2_BFD: BFD-like [2 23.4 29 0.00062 21.5 0.1 19 52-70 35-53 (55)
79 cd02066 GRX_family Glutaredoxi 23.4 1.6E+02 0.0036 17.1 4.6 33 49-83 2-34 (72)
80 PRK10638 glutaredoxin 3; Provi 23.2 1.9E+02 0.0042 18.7 4.1 33 48-82 3-35 (83)
81 TIGR00365 monothiol glutaredox 22.6 1.8E+02 0.0039 20.0 4.0 26 55-82 25-50 (97)
82 cd03031 GRX_GRX_like Glutaredo 22.1 2E+02 0.0043 21.9 4.5 26 56-83 15-40 (147)
83 PRK12759 bifunctional gluaredo 21.7 1.5E+02 0.0033 25.7 4.2 36 47-84 2-37 (410)
84 cd04879 ACT_3PGDH-like ACT_3PG 21.6 1.1E+02 0.0023 18.0 2.4 18 61-78 52-69 (71)
85 PF13291 ACT_4: ACT domain; PD 21.5 93 0.002 19.9 2.3 34 45-78 46-79 (80)
86 PRK11597 heat shock chaperone 21.1 79 0.0017 24.0 2.1 23 70-92 50-74 (142)
87 COG1913 Predicted Zn-dependent 20.9 36 0.00079 27.6 0.3 28 44-71 152-179 (181)
88 PHA02125 thioredoxin-like prot 20.7 2E+02 0.0044 18.3 3.8 31 49-81 2-32 (75)
89 PF07527 Hairy_orange: Hairy O 20.2 87 0.0019 18.8 1.8 17 58-74 8-24 (43)
No 1
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.2e-13 Score=91.30 Aligned_cols=52 Identities=31% Similarity=0.616 Sum_probs=49.2
Q ss_pred ceeeEEEEEecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeecCcc
Q 033120 44 PLVQEVVLSADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRYPVV 95 (126)
Q Consensus 44 p~~Q~VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~~~d 95 (126)
|..++++++++|+|+||..+|++.|..++||+++.+|..+++|||.|+++++
T Consensus 2 ~~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~ 53 (73)
T KOG1603|consen 2 PPIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPV 53 (73)
T ss_pred CCccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHH
Confidence 5678999999999999999999999999999999999999999999997774
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.40 E-value=1.3e-12 Score=82.83 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=40.1
Q ss_pred EecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeecCc
Q 033120 52 SADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRYPV 94 (126)
Q Consensus 52 kvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~~~ 94 (126)
.++|+|+||+++|+++|.+++||.+++||+.+++|+|+++.+.
T Consensus 4 v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~ 46 (62)
T PF00403_consen 4 VPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDK 46 (62)
T ss_dssp EESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTT
T ss_pred ECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCC
Confidence 3499999999999999999999999999999999999998554
No 3
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.22 E-value=5e-11 Score=79.78 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=40.0
Q ss_pred EEEEecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeec
Q 033120 49 VVLSADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRY 92 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~ 92 (126)
..-..||+|+||+++|+++|++++||.+|+||++.+.++|+++.
T Consensus 5 ~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 5 TLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 34457999999999999999999999999999999888888884
No 4
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.66 E-value=5.4e-08 Score=80.12 Aligned_cols=48 Identities=19% Similarity=0.395 Sum_probs=45.7
Q ss_pred eEEEEEecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeecCc
Q 033120 47 QEVVLSADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRYPV 94 (126)
Q Consensus 47 Q~VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~~~ 94 (126)
-+.++.+.|+|++|+.+|++.|..++||++|+||++++.|.|.+..|+
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~ 54 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPP 54 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCCh
Confidence 468999999999999999999999999999999999999999999776
No 5
>PLN02957 copper, zinc superoxide dismutase
Probab=97.96 E-value=2.5e-05 Score=62.59 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=41.9
Q ss_pred eEEEEEecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeec
Q 033120 47 QEVVLSADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRY 92 (126)
Q Consensus 47 Q~VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~ 92 (126)
+.+++.++|+|++|+.+|+++|.+++||.++.+|+..++++|+++.
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~ 51 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSS 51 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecC
Confidence 4556778999999999999999999999999999999999999853
No 6
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.82 E-value=4.9e-05 Score=69.64 Aligned_cols=56 Identities=21% Similarity=0.372 Sum_probs=41.1
Q ss_pred eEEEE-EecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeecCcchhhhhhhhhhh
Q 033120 47 QEVVL-SADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRYPVVVEVSKRQITAV 106 (126)
Q Consensus 47 Q~VvL-kvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~~~d~kV~~~qI~~i 106 (126)
|++.| ..||+|+||+++|+++|++++||.+++||++ +++|++..+. ....+.++..
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~--~~i~~~i~~~ 59 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASA--EALIETIKQA 59 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCH--HHHHHHHHhc
Confidence 34444 5689999999999999999999999999994 5566665333 2344444443
No 7
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.23 E-value=0.0022 Score=35.77 Aligned_cols=42 Identities=17% Similarity=0.414 Sum_probs=38.4
Q ss_pred EEEecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEee
Q 033120 50 VLSADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSR 91 (126)
Q Consensus 50 vLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~ 91 (126)
.-..+|+|..|..++++.+...+|+....+++..+.+.++++
T Consensus 6 ~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (68)
T TIGR00003 6 VQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFD 47 (68)
T ss_pred EEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeC
Confidence 345689999999999999999999999999999999999886
No 8
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00061 Score=63.15 Aligned_cols=42 Identities=21% Similarity=0.446 Sum_probs=39.1
Q ss_pred EEEecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeec
Q 033120 50 VLSADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRY 92 (126)
Q Consensus 50 vLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~ 92 (126)
..-.||+|..|+.+|+ +|.+++||++..||+...+++|.++.
T Consensus 6 l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~ 47 (713)
T COG2217 6 LSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDP 47 (713)
T ss_pred EeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecc
Confidence 3457999999999999 99999999999999999999999984
No 9
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.84 E-value=0.04 Score=50.74 Aligned_cols=41 Identities=17% Similarity=0.438 Sum_probs=38.2
Q ss_pred EecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeec
Q 033120 52 SADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRY 92 (126)
Q Consensus 52 kvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~ 92 (126)
-.+|+|.+|...+++++.+++||.++.++...+++.+.++.
T Consensus 59 V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~ 99 (741)
T PRK11033 59 VSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADN 99 (741)
T ss_pred ECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecc
Confidence 56999999999999999999999999999999999988764
No 10
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.52 E-value=0.019 Score=55.28 Aligned_cols=42 Identities=17% Similarity=0.418 Sum_probs=39.0
Q ss_pred ecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeecCc
Q 033120 53 ADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRYPV 94 (126)
Q Consensus 53 vgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~~~ 94 (126)
.||.|..|...++++++..+||.+++|++.++..+|.++...
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~ 42 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIV 42 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeecc
Confidence 389999999999999999999999999999999999999333
No 11
>PRK10671 copA copper exporting ATPase; Provisional
Probab=95.04 E-value=0.032 Score=51.49 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=37.6
Q ss_pred EecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEee
Q 033120 52 SADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSR 91 (126)
Q Consensus 52 kvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~ 91 (126)
..+|+|.+|+.++++.+.+++||.++.+++..+++.+.+.
T Consensus 105 V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~ 144 (834)
T PRK10671 105 LSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGS 144 (834)
T ss_pred eCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEcc
Confidence 6899999999999999999999999999999999998754
No 12
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.95 E-value=0.04 Score=53.10 Aligned_cols=48 Identities=15% Similarity=0.419 Sum_probs=42.7
Q ss_pred eEEEEE-ecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeecCc
Q 033120 47 QEVVLS-ADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSRYPV 94 (126)
Q Consensus 47 Q~VvLk-vgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~~~ 94 (126)
+.++|. .||.|..|...+++.|.+++||+++.||+..+++.|.++...
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~ 194 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEI 194 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccc
Confidence 555554 589999999999999999999999999999999999998543
No 13
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=94.70 E-value=0.071 Score=33.33 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=34.7
Q ss_pred EecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEe
Q 033120 52 SADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTS 90 (126)
Q Consensus 52 kvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg 90 (126)
..+++|.+|..+++..+...+|+....++.....+.+..
T Consensus 29 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (92)
T TIGR02052 29 VPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTF 67 (92)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEE
Confidence 579999999999999999999999999998888866664
No 14
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=88.89 E-value=1.8 Score=21.30 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=32.6
Q ss_pred EecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEee
Q 033120 52 SADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSR 91 (126)
Q Consensus 52 kvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~ 91 (126)
..++.|.+|...++..+...+|+.....++......+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYD 43 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEEC
Confidence 3578899999999999988899888888887777666653
No 15
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=87.62 E-value=0.89 Score=29.47 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccccccCCceeeEEEEEecccChhHH------HHHHHHHhcCCCceEEEE
Q 033120 36 ASIESLSMPLVQEVVLSADIRCSECQ------KRVADMMSKLNETESVLV 79 (126)
Q Consensus 36 ~~~esls~p~~Q~VvLkvgMsC~hC~------krVkkaLskL~GVesV~V 79 (126)
-.+++++.-. ..|.+...+...+|. ..++++|+.++||++|+|
T Consensus 24 g~V~~i~i~~-~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 24 GMVRDISIEG-GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp TSEEEEEECT-CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CCeeEEEEEC-CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3445555544 667777777777776 678999999999999986
No 16
>PRK13748 putative mercuric reductase; Provisional
Probab=79.43 E-value=4 Score=35.39 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=36.1
Q ss_pred EecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEee
Q 033120 52 SADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTSR 91 (126)
Q Consensus 52 kvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~ 91 (126)
..+|+|.+|..+++..+..++|+....++...+.+.+.++
T Consensus 6 i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~ 45 (561)
T PRK13748 6 ITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIE 45 (561)
T ss_pred ECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEEC
Confidence 4689999999999999999999999999999999888754
No 17
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=74.45 E-value=4.8 Score=31.40 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=46.4
Q ss_pred cceeeecccccccccCccccccccCCce--------eeEEEEEec-ccChhHHHHHHHHHhcCCCceEEEEecc-CCEEE
Q 033120 18 GIEFKKSRRTKSLTGTSLASIESLSMPL--------VQEVVLSAD-IRCSECQKRVADMMSKLNETESVLVNVS-EKKVT 87 (126)
Q Consensus 18 ~~~~~~~~~~~~l~~~sl~~~esls~p~--------~Q~VvLkvg-MsC~hC~krVkkaLskL~GVesV~VDLe-~KkVt 87 (126)
+|+++.+.+..|-.+...++.|--.+.+ -...+|.|+ --|..|..-|.....++ |+++++|.-. .+++.
T Consensus 63 ri~~~~~~~~~pn~~~~~~HAE~~aiqqA~d~G~~~g~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~ 141 (146)
T PF14437_consen 63 RIAAKIPGKPGPNNNMAKAHAEAGAIQQAYDAGKTVGRSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVY 141 (146)
T ss_pred ccccccccccCccchhHHHHHHHHHHHHHHHhcCccCCeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEE
Confidence 4555555333444444555555433321 345666666 45999999999999998 9999999988 77554
Q ss_pred E
Q 033120 88 L 88 (126)
Q Consensus 88 V 88 (126)
+
T Consensus 142 ~ 142 (146)
T PF14437_consen 142 Y 142 (146)
T ss_pred E
Confidence 3
No 18
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=67.48 E-value=9.4 Score=23.73 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=19.2
Q ss_pred HHHHHHHhc---CCCceEEEEeccCCEEEEEeecCcc
Q 033120 62 KRVADMMSK---LNETESVLVNVSEKKVTLTSRYPVV 95 (126)
Q Consensus 62 krVkkaLsk---L~GVesV~VDLe~KkVtVtg~~~~d 95 (126)
.+|+++|.. +++- ++.|...++.|+++|.++..
T Consensus 2 ~~v~~~L~~~~~~~~~-~i~v~v~~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 2 TKVRAALRADPWLPDS-NISVSVENGVVTLSGEVPSQ 37 (64)
T ss_dssp -----------CTT-T-TEEEEEECTEEEEEEEESSC
T ss_pred cccccccccccccCCC-eEEEEEECCEEEEEeeCcHH
Confidence 356777766 4555 78999999999999998653
No 19
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=66.96 E-value=28 Score=23.79 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCceEEEEeccCCEEEEEeecCcchhhhhhhhhhhh
Q 033120 61 QKRVADMMSKLNETESVLVNVSEKKVTLTSRYPVVVEVSKRQITAVR 107 (126)
Q Consensus 61 ~krVkkaLskL~GVesV~VDLe~KkVtVtg~~~~d~kV~~~qI~~i~ 107 (126)
...|+++|..++|++=.-.+-+ +|..|+-..+. ..-..+.+.+|.
T Consensus 17 ~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~-~~~~~~~~~~i~ 61 (79)
T PF03927_consen 17 LEEVAEALAAIPGVEVHAVDED-GKIVVTIEAES-SEEEVDLIDAIN 61 (79)
T ss_dssp HHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESS-HHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCC-hHHHHHHHHHHH
Confidence 4679999999999966666666 88887777554 233444444443
No 20
>PRK11023 outer membrane lipoprotein; Provisional
Probab=59.75 E-value=27 Score=27.17 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCce---EEEEeccCCEEEEEeecCcc
Q 033120 60 CQKRVADMMSKLNETE---SVLVNVSEKKVTLTSRYPVV 95 (126)
Q Consensus 60 C~krVkkaLskL~GVe---sV~VDLe~KkVtVtg~~~~d 95 (126)
=..+|+.+|..-+++. .+.|+..++.|+++|.++..
T Consensus 50 i~~~V~~aL~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~ 88 (191)
T PRK11023 50 LELRVNNALSKDEQIKKEARINVTAYQGKVLLTGQSPNA 88 (191)
T ss_pred HHHHHHHHHhhCcccCcCceEEEEEECCEEEEEEEeCCH
Confidence 3578888998766674 69999999999999998874
No 21
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=58.22 E-value=34 Score=25.53 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhcCCCceEEEEeccCCEEEEEeecC
Q 033120 58 SECQKRVADMMSKLNETESVLVNVSEKKVTLTSRYP 93 (126)
Q Consensus 58 ~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg~~~ 93 (126)
..=+.++++.+.+++||+++.|=+..+.+.|--+++
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~ 109 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVAVDLD 109 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEEEEec
Confidence 344788999999999999999999999999998876
No 22
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=57.90 E-value=11 Score=25.83 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCCceEEEEecc
Q 033120 62 KRVADMMSKLNETESVLVNVS 82 (126)
Q Consensus 62 krVkkaLskL~GVesV~VDLe 82 (126)
..++++|..++|+++|+|++.
T Consensus 58 ~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 58 GEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred HHHHHHHHhCCCCceEEEEEE
Confidence 458889999999999999875
No 23
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=57.79 E-value=25 Score=26.31 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhcCC-CceEEEEeccCCEEEEEeecCc
Q 033120 58 SECQKRVADMMSKLN-ETESVLVNVSEKKVTLTSRYPV 94 (126)
Q Consensus 58 ~hC~krVkkaLskL~-GVesV~VDLe~KkVtVtg~~~~ 94 (126)
+.=..+|.++|.+-. +...+.|.++++.|++.|.++.
T Consensus 25 ~~~~~~i~~~i~~~~~~~~~i~V~v~~G~v~l~G~v~s 62 (147)
T PRK11198 25 EDAADALKEHISKQGLGDADVNVQVEDGKATVSGDAAS 62 (147)
T ss_pred HHHHHHHHHHHHhcCCCcCCceEEEeCCEEEEEEEeCC
Confidence 344577888887753 6777888889999999999775
No 24
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=57.60 E-value=43 Score=23.65 Aligned_cols=34 Identities=3% Similarity=0.079 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCceEEEEeccCCEEEEEeecCc
Q 033120 61 QKRVADMMSKLNETESVLVNVSEKKVTLTSRYPV 94 (126)
Q Consensus 61 ~krVkkaLskL~GVesV~VDLe~KkVtVtg~~~~ 94 (126)
...|+++|..++|++=.-.|-+++|..|+-..+.
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~ 52 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAED 52 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCC
Confidence 5689999999999988888888888888776444
No 25
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=55.99 E-value=30 Score=21.23 Aligned_cols=32 Identities=16% Similarity=0.399 Sum_probs=23.1
Q ss_pred EEEEecccChhHHHHHHHHHhcCCCceEEEEecc
Q 033120 49 VVLSADIRCSECQKRVADMMSKLNETESVLVNVS 82 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe 82 (126)
|+|--.-.|.+|.+ ++..|.++ |++--.+|+.
T Consensus 2 v~ly~~~~C~~C~~-~~~~L~~~-~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQ-LMRTLDKL-GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHH-HHHHHHHc-CCceEEEeCc
Confidence 55666788999987 67788886 7765555554
No 26
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=55.47 E-value=26 Score=24.29 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=25.6
Q ss_pred eEEEEEecccChhHHHHHHHHHhcCCCceEEEEecc
Q 033120 47 QEVVLSADIRCSECQKRVADMMSKLNETESVLVNVS 82 (126)
Q Consensus 47 Q~VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe 82 (126)
..|++-.--.|..|. ++++.|.+. ||.-..+|++
T Consensus 8 ~~Vvvysk~~Cp~C~-~ak~~L~~~-~i~~~~vdid 41 (99)
T TIGR02189 8 KAVVIFSRSSCCMCH-VVKRLLLTL-GVNPAVHEID 41 (99)
T ss_pred CCEEEEECCCCHHHH-HHHHHHHHc-CCCCEEEEcC
Confidence 347777778999998 677799987 7765555555
No 27
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=54.89 E-value=29 Score=24.69 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=25.6
Q ss_pred eeeEEEEEecccChhHHHHHHHHHhcCCCceEEEEe
Q 033120 45 LVQEVVLSADIRCSECQKRVADMMSKLNETESVLVN 80 (126)
Q Consensus 45 ~~Q~VvLkvgMsC~hC~krVkkaLskL~GVesV~VD 80 (126)
..|....-++-.++ ...++++|++++||++++|-
T Consensus 50 aL~~~~vv~D~~g~--td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 50 AINVMVVMGDAEGG--TEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred eeEEEEEEecCCcC--hHHHHHHHhcCCCccEEEEE
Confidence 34555555566544 49999999999999999874
No 28
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=52.47 E-value=31 Score=24.96 Aligned_cols=39 Identities=8% Similarity=0.159 Sum_probs=33.0
Q ss_pred ccChhHHHHHHHHH---hcCCCceEEEEeccCCEEEEEeecC
Q 033120 55 IRCSECQKRVADMM---SKLNETESVLVNVSEKKVTLTSRYP 93 (126)
Q Consensus 55 MsC~hC~krVkkaL---skL~GVesV~VDLe~KkVtVtg~~~ 93 (126)
.....-.+.|++|| ..+.+|+++.+..++.++.|++.+.
T Consensus 65 ~~~sEi~r~I~EaL~~d~rI~~V~~f~f~~~~~~l~v~f~V~ 106 (112)
T PF10934_consen 65 YVESEIEREIEEALLQDPRITSVENFSFEWEGDSLYVSFTVT 106 (112)
T ss_pred HHHHHHHHHHHHHHhcCCCcceEEEEEEEEECCEEEEEEEEE
Confidence 34566789999999 6777999999999999999999854
No 29
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=52.28 E-value=12 Score=27.06 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHhcCCCceEEEEe
Q 033120 58 SECQKRVADMMSKLNETESVLVN 80 (126)
Q Consensus 58 ~hC~krVkkaLskL~GVesV~VD 80 (126)
+|=-.+++++|++++||++++|-
T Consensus 61 Eg~td~~ee~l~~vegV~sveve 83 (88)
T COG2092 61 EGGTDALEEALEEVEGVESVEVE 83 (88)
T ss_pred ccCcHHHHHHHhhccCcceEEEE
Confidence 45678999999999999999873
No 30
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=52.03 E-value=37 Score=22.06 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=27.1
Q ss_pred eEEEEEecccChhHHHHHHHHHhcCCCceEEEEeccC
Q 033120 47 QEVVLSADIRCSECQKRVADMMSKLNETESVLVNVSE 83 (126)
Q Consensus 47 Q~VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~ 83 (126)
..|+|-..-.|.+|.+ +++.|.+. ||+=..+|+.+
T Consensus 8 ~~V~ly~~~~Cp~C~~-ak~~L~~~-gi~y~~idi~~ 42 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAK-AKATLKEK-GYDFEEIPLGN 42 (79)
T ss_pred CCEEEEECCCCHhHHH-HHHHHHHc-CCCcEEEECCC
Confidence 3578888999999975 67788875 88877777653
No 31
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=52.02 E-value=21 Score=28.01 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=25.1
Q ss_pred EEEEEecccChhHH------HHHHHHHhcCCCceEEEEecc
Q 033120 48 EVVLSADIRCSECQ------KRVADMMSKLNETESVLVNVS 82 (126)
Q Consensus 48 ~VvLkvgMsC~hC~------krVkkaLskL~GVesV~VDLe 82 (126)
.|.+..-+...+|. ..|+++|..++||++|+|++.
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~ 154 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELV 154 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEE
Confidence 34455555555554 458999999999999988763
No 32
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.95 E-value=22 Score=26.24 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCceEEEEe-------ccCCEEEEEee
Q 033120 63 RVADMMSKLNETESVLVN-------VSEKKVTLTSR 91 (126)
Q Consensus 63 rVkkaLskL~GVesV~VD-------Le~KkVtVtg~ 91 (126)
-+.+.|++++||+.|.+. .++=++|++|+
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~ 58 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGT 58 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcC
Confidence 467889999999877654 45668888885
No 33
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=50.69 E-value=29 Score=21.21 Aligned_cols=33 Identities=6% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEecccChhHHHHHHHHHhcC----CCceEEEEecc
Q 033120 49 VVLSADIRCSECQKRVADMMSKL----NETESVLVNVS 82 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL----~GVesV~VDLe 82 (126)
|++--.=.|.+|. +++..|+++ ++++=..+|.+
T Consensus 3 v~~f~~~~C~~C~-~~~~~l~~l~~~~~~i~~~~id~~ 39 (67)
T cd02973 3 IEVFVSPTCPYCP-DAVQAANRIAALNPNISAEMIDAA 39 (67)
T ss_pred EEEEECCCCCCcH-HHHHHHHHHHHhCCceEEEEEEcc
Confidence 4444455899994 455666655 34555555543
No 34
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=49.74 E-value=17 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=25.2
Q ss_pred EEEEecccChhH------HHHHHHHHhcCCCceEEEEec
Q 033120 49 VVLSADIRCSEC------QKRVADMMSKLNETESVLVNV 81 (126)
Q Consensus 49 VvLkvgMsC~hC------~krVkkaLskL~GVesV~VDL 81 (126)
+..+..++=.|| ...|++++..++||++++|++
T Consensus 51 v~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V~l 89 (111)
T COG2151 51 VKVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEVEL 89 (111)
T ss_pred EEEEEecCCCCCCccHHHHHHHHHHHHhcCCcceEEEEE
Confidence 444445555677 678999999999999998764
No 35
>PRK10329 glutaredoxin-like protein; Provisional
Probab=49.48 E-value=48 Score=22.18 Aligned_cols=34 Identities=15% Similarity=0.355 Sum_probs=26.7
Q ss_pred EEEEEecccChhHHHHHHHHHhcCCCceEEEEeccC
Q 033120 48 EVVLSADIRCSECQKRVADMMSKLNETESVLVNVSE 83 (126)
Q Consensus 48 ~VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~ 83 (126)
.|+|-..=.|..|.+ +++.|.+. ||.=-++|+++
T Consensus 2 ~v~lYt~~~Cp~C~~-ak~~L~~~-gI~~~~idi~~ 35 (81)
T PRK10329 2 RITIYTRNDCVQCHA-TKRAMESR-GFDFEMINVDR 35 (81)
T ss_pred EEEEEeCCCCHhHHH-HHHHHHHC-CCceEEEECCC
Confidence 356667778999987 89999885 88877777764
No 36
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=49.27 E-value=19 Score=29.80 Aligned_cols=56 Identities=27% Similarity=0.301 Sum_probs=39.5
Q ss_pred HHHHHHhcC---CCceEEEEeccCCEEEEEeecCcchhhhhhhhhhhhc-----CcchHHHHHHHhhcc
Q 033120 63 RVADMMSKL---NETESVLVNVSEKKVTLTSRYPVVVEVSKRQITAVRR-----NPLQKIAIIKRIFGS 123 (126)
Q Consensus 63 rVkkaLskL---~GVesV~VDLe~KkVtVtg~~~~d~kV~~~qI~~i~r-----n~~~~~~~ikr~~~s 123 (126)
+|++.+.++ -|++++++.+...-+.+..+.+. ...++-+++ +.|+|++.+-||.|.
T Consensus 35 rve~~~~ria~a~g~~~~~~~vt~t~Ii~s~~~~~-----~~~i~~~r~~~~~~~nl~kvs~v~~i~~~ 98 (250)
T COG2966 35 RVEETMNRIARALGLESVESFVTPTAIILSTEDDD-----TSCVTLVRVIPDRGINLEKVSEVNRISRA 98 (250)
T ss_pred HHHHHHHHHHHHcCCCcceeeccCceEEEEeccCC-----CCcceEEEecCCCCccHHHHHHHHHHHHH
Confidence 444444433 49999999999999999998531 223333344 459999999999863
No 37
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.81 E-value=25 Score=21.94 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=24.3
Q ss_pred eeEEEEEecccChh-HHHHHHHHHhcCCCceEEEE
Q 033120 46 VQEVVLSADIRCSE-CQKRVADMMSKLNETESVLV 79 (126)
Q Consensus 46 ~Q~VvLkvgMsC~h-C~krVkkaLskL~GVesV~V 79 (126)
...+.+....+=.. --..+-+.|.+++||.+|.+
T Consensus 40 ~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 40 RANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred eEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 34455555444444 67889999999999999875
No 38
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=44.95 E-value=59 Score=20.37 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=26.2
Q ss_pred EEEEEecccChhHHHHHHHHHhcCCCceEEEEeccC
Q 033120 48 EVVLSADIRCSECQKRVADMMSKLNETESVLVNVSE 83 (126)
Q Consensus 48 ~VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~ 83 (126)
.|+|-.--.|..|.+. ++.|.+. ||.=.++|+.+
T Consensus 2 ~v~lys~~~Cp~C~~a-k~~L~~~-~i~~~~~~v~~ 35 (72)
T cd03029 2 SVSLFTKPGCPFCARA-KAALQEN-GISYEEIPLGK 35 (72)
T ss_pred eEEEEECCCCHHHHHH-HHHHHHc-CCCcEEEECCC
Confidence 3667777899999875 8888886 88777777664
No 39
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=41.21 E-value=25 Score=24.97 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHhcCCCceEEEEe
Q 033120 58 SECQKRVADMMSKLNETESVLVN 80 (126)
Q Consensus 58 ~hC~krVkkaLskL~GVesV~VD 80 (126)
.+=...+++++++++||++|+|-
T Consensus 61 ~~~td~lee~i~~~e~Vqsvei~ 83 (88)
T PRK00435 61 EGGTEPVEEAFANVEGVESVEVE 83 (88)
T ss_pred CcCcHHHHHHHhccCCCcEEEEE
Confidence 46678999999999999999874
No 40
>PRK10568 periplasmic protein; Provisional
Probab=41.00 E-value=85 Score=24.65 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCCCce--EEEEeccCCEEEEEeecCc
Q 033120 59 ECQKRVADMMSKLNETE--SVLVNVSEKKVTLTSRYPV 94 (126)
Q Consensus 59 hC~krVkkaLskL~GVe--sV~VDLe~KkVtVtg~~~~ 94 (126)
.=..+|+.+|..-+++. .+.|...++.|++.|.++.
T Consensus 60 ~I~~~v~~~L~~~~~i~~~~I~V~v~~G~V~L~G~V~s 97 (203)
T PRK10568 60 AITAKVKAALVDHDNIKSTDISVKTHQKVVTLSGFVES 97 (203)
T ss_pred HHHHHHHHHHHhCCCCCCCceEEEEECCEEEEEEEeCC
Confidence 34567888877655554 7889999999999999874
No 41
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=40.54 E-value=78 Score=18.69 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=21.5
Q ss_pred EEEEecccChhHHHHHHHHHhcCCCceEEEEeccC
Q 033120 49 VVLSADIRCSECQKRVADMMSKLNETESVLVNVSE 83 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~ 83 (126)
|.|-..=.|.+|.+ ++..|.+. |++=..+|+.+
T Consensus 2 i~lf~~~~C~~C~~-~~~~l~~~-~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYTTPWCPPCKK-AKEYLTSK-GIAFEEIDVEK 34 (74)
T ss_pred EEEEcCCCChhHHH-HHHHHHHC-CCeEEEEeccC
Confidence 34555567999986 56778774 66655555543
No 42
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=40.07 E-value=90 Score=20.30 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=24.6
Q ss_pred EEEEecccChhHHHHHHHHHhcC----CCceEEEEeccC
Q 033120 49 VVLSADIRCSECQKRVADMMSKL----NETESVLVNVSE 83 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL----~GVesV~VDLe~ 83 (126)
|++-.--.|..|.+ +++.|.++ .||.=..+|+.+
T Consensus 3 v~iy~~~~C~~C~~-a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFGRPGCPYCVR-AKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred EEEEeCCCChhHHH-HHHHHHhhcccccCCcEEEEECCC
Confidence 55666668999976 55677775 588777777765
No 43
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=39.26 E-value=30 Score=21.90 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=20.9
Q ss_pred cCCCc--eEEEEeccCCEEEEEeecCc
Q 033120 70 KLNET--ESVLVNVSEKKVTLTSRYPV 94 (126)
Q Consensus 70 kL~GV--esV~VDLe~KkVtVtg~~~~ 94 (126)
.++|+ ++++|.+.++.+.|+|....
T Consensus 14 ~lpg~~~~~i~V~v~~~~l~I~g~~~~ 40 (88)
T cd06464 14 DLPGFKKEDIKVEVEDGVLTISGEREE 40 (88)
T ss_pred ECCCCCHHHeEEEEECCEEEEEEEEec
Confidence 46787 88999999999999998543
No 44
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=37.33 E-value=94 Score=19.55 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=24.2
Q ss_pred EEEEecccChhHHHHHHHHHhcCCCceEEEEeccC
Q 033120 49 VVLSADIRCSECQKRVADMMSKLNETESVLVNVSE 83 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~ 83 (126)
|+|-..-.|..|.+ +++.|.+. ||.=..+|+.+
T Consensus 3 v~ly~~~~C~~C~k-a~~~L~~~-gi~~~~~di~~ 35 (73)
T cd03027 3 VTIYSRLGCEDCTA-VRLFLREK-GLPYVEINIDI 35 (73)
T ss_pred EEEEecCCChhHHH-HHHHHHHC-CCceEEEECCC
Confidence 55666678999975 67788885 88777777654
No 45
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=36.55 E-value=60 Score=20.56 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=15.8
Q ss_pred cccChhHHHHHHHHHhcCC
Q 033120 54 DIRCSECQKRVADMMSKLN 72 (126)
Q Consensus 54 gMsC~hC~krVkkaLskL~ 72 (126)
|+.|....-+++++|.+++
T Consensus 7 g~~CP~Pll~~~~~l~~l~ 25 (70)
T PF01206_consen 7 GLSCPMPLLKAKKALKELP 25 (70)
T ss_dssp S-STTHHHHHHHHHHHTSG
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 6789999999999999985
No 46
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=35.97 E-value=34 Score=27.39 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCCceEEEEe
Q 033120 60 CQKRVADMMSKLNETESVLVN 80 (126)
Q Consensus 60 C~krVkkaLskL~GVesV~VD 80 (126)
=+++++.+|++|+||-+|+|-
T Consensus 62 lE~~L~~iL~~I~GvG~V~Vm 82 (186)
T TIGR02830 62 YENELKEILEKIEGVGDVTVM 82 (186)
T ss_pred HHHHHHHHHHhccCcceeEEE
Confidence 478999999999999998764
No 47
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.38 E-value=38 Score=25.02 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=20.8
Q ss_pred HhcCCCceEEEEeccCCEEEEEe
Q 033120 68 MSKLNETESVLVNVSEKKVTLTS 90 (126)
Q Consensus 68 LskL~GVesV~VDLe~KkVtVtg 90 (126)
+..++|++.+++.+++++.-|++
T Consensus 36 vas~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 36 VASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred EEecCCceEEEEecccceEEEec
Confidence 45678999999999999999999
No 48
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=35.33 E-value=86 Score=19.80 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=22.9
Q ss_pred EEEecccChhHHHHHHHHHhcCCCceEEEEeccC
Q 033120 50 VLSADIRCSECQKRVADMMSKLNETESVLVNVSE 83 (126)
Q Consensus 50 vLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~ 83 (126)
+|-..-.|..|.+ +++.|.+. ||.=-.+|+.+
T Consensus 2 ~ly~~~~Cp~C~~-ak~~L~~~-~i~~~~~di~~ 33 (72)
T TIGR02194 2 TVYSKNNCVQCKM-TKKALEEH-GIAFEEINIDE 33 (72)
T ss_pred EEEeCCCCHHHHH-HHHHHHHC-CCceEEEECCC
Confidence 4455568999975 67788885 88776777664
No 49
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=35.00 E-value=63 Score=27.34 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=27.2
Q ss_pred EEEEEecccChhHHHHHHHHHhcCCCceEEEEe
Q 033120 48 EVVLSADIRCSECQKRVADMMSKLNETESVLVN 80 (126)
Q Consensus 48 ~VvLkvgMsC~hC~krVkkaLskL~GVesV~VD 80 (126)
+|.|..+-+ +.|+..|++.+..++||+++..-
T Consensus 62 ~vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~~ 93 (297)
T COG2177 62 TVYLQIDAD-QDDAALVREKIEGIPGVKSVRFI 93 (297)
T ss_pred EEEEecCCC-hHHHHHHHHHHhcCCCcceEEEe
Confidence 456777777 99999999999999999998753
No 50
>PRK08223 hypothetical protein; Validated
Probab=34.73 E-value=21 Score=30.20 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=12.9
Q ss_pred hcCcchHH--HHHHHhhc
Q 033120 107 RRNPLQKI--AIIKRIFG 122 (126)
Q Consensus 107 ~rn~~~~~--~~ikr~~~ 122 (126)
+||||||. ++++|+|+
T Consensus 268 ~~~p~q~~~~~~~~~~~~ 285 (287)
T PRK08223 268 NRHPLQRLKRRLLRRRLN 285 (287)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 79999975 67888875
No 51
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=34.67 E-value=23 Score=23.48 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=19.0
Q ss_pred EEEecccChhHHHHHHHHHhcC
Q 033120 50 VLSADIRCSECQKRVADMMSKL 71 (126)
Q Consensus 50 vLkvgMsC~hC~krVkkaLskL 71 (126)
.|.++-.|+.|...+++.|.+.
T Consensus 32 ~~~~g~~CG~C~~~i~~il~~~ 53 (64)
T PRK10509 32 FVPVGNQCGKCIRAAREVMQDE 53 (64)
T ss_pred hcCCCCCccchHHHHHHHHHHH
Confidence 4789999999999999998653
No 52
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=34.06 E-value=39 Score=22.57 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=20.2
Q ss_pred cCCCc--eEEEEeccCCEEEEEeecC
Q 033120 70 KLNET--ESVLVNVSEKKVTLTSRYP 93 (126)
Q Consensus 70 kL~GV--esV~VDLe~KkVtVtg~~~ 93 (126)
.|||| ++++|+++++.++|.|.-.
T Consensus 17 ~lPGv~~edi~v~~~~~~L~I~g~~~ 42 (93)
T cd06471 17 DLPGFKKEDIKLDYKDGYLTISAKRD 42 (93)
T ss_pred ECCCCCHHHeEEEEECCEEEEEEEEc
Confidence 46787 7899999999999999754
No 53
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=33.15 E-value=1.1e+02 Score=24.21 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCceEEEEec
Q 033120 61 QKRVADMMSKLNETESVLVNV 81 (126)
Q Consensus 61 ~krVkkaLskL~GVesV~VDL 81 (126)
+..+++.|+.|+||++..|++
T Consensus 109 e~EL~rtI~~i~~V~~ArVhl 129 (193)
T TIGR02544 109 EQRLEQTLSQIDGVISARVHV 129 (193)
T ss_pred HHHHHHHHHhcCCeeeeEEEE
Confidence 567888999999999888776
No 54
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=31.15 E-value=55 Score=25.90 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCCceEEEEec
Q 033120 61 QKRVADMMSKLNETESVLVNV 81 (126)
Q Consensus 61 ~krVkkaLskL~GVesV~VDL 81 (126)
+..+++.|+.|+||++..|++
T Consensus 117 e~eL~~tI~~i~gV~~A~V~l 137 (206)
T PF01514_consen 117 EGELERTIESIDGVESARVHL 137 (206)
T ss_dssp HHHHHHHHTTSTTEEEEEEEE
T ss_pred HHHHHHHHHcCCCeeEEEEEE
Confidence 567889999999999999985
No 55
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=30.91 E-value=48 Score=23.37 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCceEEEEe
Q 033120 61 QKRVADMMSKLNETESVLVN 80 (126)
Q Consensus 61 ~krVkkaLskL~GVesV~VD 80 (126)
...+.+++++++||++++|.
T Consensus 64 td~lee~i~~~d~VqsveI~ 83 (88)
T cd00292 64 TDELEEAISEEDGVQSVDVE 83 (88)
T ss_pred cHHHHHHHhccCCceEEEEE
Confidence 48899999999999999985
No 56
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=30.31 E-value=1.1e+02 Score=24.51 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=45.5
Q ss_pred ceeeecccccccccCccccccccCCceeeEEEEEecccChhHHHHHHHHHhcCCCceEEEEeccCCEEEEEe
Q 033120 19 IEFKKSRRTKSLTGTSLASIESLSMPLVQEVVLSADIRCSECQKRVADMMSKLNETESVLVNVSEKKVTLTS 90 (126)
Q Consensus 19 ~~~~~~~~~~~l~~~sl~~~esls~p~~Q~VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~KkVtVtg 90 (126)
+.+.--++ +||... .+. ..|.+--|++-.++++.+|-..|+..|.-+ +++.=-+||.+-.
T Consensus 44 l~Vh~a~s-LPLp~e----~~~-lRprIDlIVFvinl~sk~SL~~ve~SL~~v------d~~fflGKVCfl~ 103 (176)
T PF11111_consen 44 LKVHLAKS-LPLPSE----NNN-LRPRIDLIVFVINLHSKYSLQSVEASLSHV------DPSFFLGKVCFLA 103 (176)
T ss_pred EEEEEecc-CCCccc----ccC-CCceeEEEEEEEecCCcccHHHHHHHHhhC------ChhhhccceEEEE
Confidence 67777777 888732 111 279999999999999999999999999987 3455556665443
No 57
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=29.78 E-value=1.4e+02 Score=18.44 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEecccChhHHHHHHH---HHhcCCC-ceEEEEeccC
Q 033120 49 VVLSADIRCSECQKRVAD---MMSKLNE-TESVLVNVSE 83 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkk---aLskL~G-VesV~VDLe~ 83 (126)
|++-..-.|.+|...... .....++ +.-+.||.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~ 41 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME 41 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc
Confidence 455567889999854332 2223332 6666777654
No 58
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=29.67 E-value=1.5e+02 Score=19.58 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=26.9
Q ss_pred ccccccCCceeeEEEEEecccChhHHHHH---HHHHhcCC--CceEEEEec
Q 033120 36 ASIESLSMPLVQEVVLSADIRCSECQKRV---ADMMSKLN--ETESVLVNV 81 (126)
Q Consensus 36 ~~~esls~p~~Q~VvLkvgMsC~hC~krV---kkaLskL~--GVesV~VDL 81 (126)
.+.+.+ .-+...|.+...-.|.+|.... .+...+++ |+.-+-|+.
T Consensus 18 ~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~ 67 (124)
T PF00578_consen 18 VSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIST 67 (124)
T ss_dssp EEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES
T ss_pred EEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccc
Confidence 444555 3356666666666899999776 44444433 665555444
No 59
>PHA03019 hypothetical protein; Provisional
Probab=29.53 E-value=32 Score=24.26 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=17.4
Q ss_pred cccChhHHHHHHHHHhcCCCce
Q 033120 54 DIRCSECQKRVADMMSKLNETE 75 (126)
Q Consensus 54 gMsC~hC~krVkkaLskL~GVe 75 (126)
-.+|+.|++...++|..-+...
T Consensus 20 ~~kcd~c~kn~nd~l~aee~lk 41 (77)
T PHA03019 20 IIKCDECEKNFNDALLAEENLK 41 (77)
T ss_pred chhHHHHHHHHHHHHHhHHHHh
Confidence 4689999999999998744333
No 60
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=28.51 E-value=60 Score=19.23 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=18.9
Q ss_pred CCCc--eEEEEeccCCEEEEEeecC
Q 033120 71 LNET--ESVLVNVSEKKVTLTSRYP 93 (126)
Q Consensus 71 L~GV--esV~VDLe~KkVtVtg~~~ 93 (126)
++|+ +++.|+..++.++|.+...
T Consensus 14 ~~~~~~~~i~v~~~~~~l~v~~~~~ 38 (80)
T cd00298 14 LPGVKKEDIKVEVEDNVLTISGKRE 38 (80)
T ss_pred CCCCCHHHeEEEEECCEEEEEEEEc
Confidence 4566 8899999999999998744
No 61
>PF00736 EF1_GNE: EF-1 guanine nucleotide exchange domain; InterPro: IPR014038 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 2YY3_B 1GH8_A 1B64_A 1IJE_B 1IJF_B 1F60_B 1G7C_B 2B7B_B 2B7C_B.
Probab=27.46 E-value=63 Score=22.75 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=23.9
Q ss_pred eeEEEEEecccChhHHHHHHHHH-hcCCCceEEEEe
Q 033120 46 VQEVVLSADIRCSECQKRVADMM-SKLNETESVLVN 80 (126)
Q Consensus 46 ~Q~VvLkvgMsC~hC~krVkkaL-skL~GVesV~VD 80 (126)
.|....-++-- +=...++++| +.++||+||+|.
T Consensus 51 L~v~~vv~D~~--~~~d~lee~i~~~~e~Vqsvei~ 84 (89)
T PF00736_consen 51 LQVSCVVEDDE--GSTDDLEEAIESFEEGVQSVEIE 84 (89)
T ss_dssp EEEEEEECTTT--CGHHHHHHHHTTCTTTEEEEEEE
T ss_pred EEEEEEEEcCc--cChHHHHHHHHhcCCCccEEEEE
Confidence 44444555533 3468899999 999999999884
No 62
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=27.44 E-value=1.3e+02 Score=22.23 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCCceEEEEeccCCEEEEEee
Q 033120 62 KRVADMMSKLNETESVLVNVSEKKVTLTSR 91 (126)
Q Consensus 62 krVkkaLskL~GVesV~VDLe~KkVtVtg~ 91 (126)
+..+.+|.++ |-++|..-++++.|.++.+
T Consensus 22 aeLr~~l~~~-Gf~~V~Tyi~SGNvvf~~~ 50 (137)
T PF08002_consen 22 AELREALEDL-GFTNVRTYIQSGNVVFESD 50 (137)
T ss_dssp HHHHHHHHHC-T-EEEEEETTTTEEEEEES
T ss_pred HHHHHHHHHc-CCCCceEEEeeCCEEEecC
Confidence 3456777776 7888888888888888843
No 63
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=27.23 E-value=1.4e+02 Score=17.57 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=20.5
Q ss_pred EEEEecccChhHHHHHHHHHhcCCCceEEEEecc
Q 033120 49 VVLSADIRCSECQKRVADMMSKLNETESVLVNVS 82 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe 82 (126)
|++--.-.|.+|.+ ++.+|.+. |+.=..+|+.
T Consensus 2 v~l~~~~~c~~c~~-~~~~l~~~-~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKA-TKRFLDER-GIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHH-HHHHHHHC-CCCeEEEeCC
Confidence 34444556999986 66788774 6655555543
No 64
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=26.97 E-value=1.6e+02 Score=21.72 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCceEEEEeccCCEEEEEeecCcchhhhhhhhhhh
Q 033120 61 QKRVADMMSKLNETESVLVNVSEKKVTLTSRYPVVVEVSKRQITAV 106 (126)
Q Consensus 61 ~krVkkaLskL~GVesV~VDLe~KkVtVtg~~~~d~kV~~~qI~~i 106 (126)
-.+|+.+|..|||++=.--|.+ +|..|--.... .....+.++.|
T Consensus 20 l~av~~~L~~ip~~EV~~~d~~-GKlVVVie~~~-~~~l~~tie~i 63 (94)
T COG3062 20 LSAVKTALLAIPGCEVYGEDAE-GKLVVVIEAED-SETLLETIESI 63 (94)
T ss_pred HHHHHHHHhcCCCcEeeccCCC-ceEEEEEEcCc-hHHHHHHHHHH
Confidence 4689999999999998888888 55544444222 23344444443
No 65
>PHA03050 glutaredoxin; Provisional
Probab=26.83 E-value=1.3e+02 Score=21.30 Aligned_cols=25 Identities=20% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEEecccChhHHHHHHHHHhcCCCc
Q 033120 48 EVVLSADIRCSECQKRVADMMSKLNET 74 (126)
Q Consensus 48 ~VvLkvgMsC~hC~krVkkaLskL~GV 74 (126)
.|++-.--.|..| +++++.|.+. ||
T Consensus 14 ~V~vys~~~CPyC-~~ak~~L~~~-~i 38 (108)
T PHA03050 14 KVTIFVKFTCPFC-RNALDILNKF-SF 38 (108)
T ss_pred CEEEEECCCChHH-HHHHHHHHHc-CC
Confidence 4677777789999 5688889886 66
No 66
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=26.78 E-value=91 Score=24.53 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHhcCCCceEEEEeccCCE-------------------EEEEeecCcchhhhhhhhhhh
Q 033120 58 SECQKRVADMMSKLNETESVLVNVSEKK-------------------VTLTSRYPVVVEVSKRQITAV 106 (126)
Q Consensus 58 ~hC~krVkkaLskL~GVesV~VDLe~Kk-------------------VtVtg~~~~d~kV~~~qI~~i 106 (126)
.||==-++..+.+++||.++.|=-.++. |.|++| + ..++-+++-.+
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yD--p-~~isy~~Ll~~ 74 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYD--P-AVISYRELLEL 74 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEEC--C-CcCCHHHHHHH
Confidence 3567778889999999999999776665 777777 4 34666666554
No 67
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=26.69 E-value=1.6e+02 Score=18.09 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=23.0
Q ss_pred EEEEecccChhHHHHHHHHHhcCCCceEEEEeccC
Q 033120 49 VVLSADIRCSECQKRVADMMSKLNETESVLVNVSE 83 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~ 83 (126)
|+|-..-.|..|.+ +++.|.+. |+.--.+|+.+
T Consensus 2 i~ly~~~~Cp~C~~-ak~~L~~~-~i~~~~i~i~~ 34 (75)
T cd03418 2 VEIYTKPNCPYCVR-AKALLDKK-GVDYEEIDVDG 34 (75)
T ss_pred EEEEeCCCChHHHH-HHHHHHHC-CCcEEEEECCC
Confidence 45566677999976 67778875 77666666643
No 68
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=26.21 E-value=58 Score=23.90 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCceEEEEec-------cCCEEEEEee
Q 033120 62 KRVADMMSKLNETESVLVNV-------SEKKVTLTSR 91 (126)
Q Consensus 62 krVkkaLskL~GVesV~VDL-------e~KkVtVtg~ 91 (126)
--+.++|++++||+.|.+.+ ++=++|++|+
T Consensus 20 ~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~ 56 (95)
T PF02680_consen 20 VELAKALSELEGVDGVNITVVEVDVETENLKITIEGD 56 (95)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEES
T ss_pred HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeC
Confidence 35788999999999887654 3457888886
No 69
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=25.63 E-value=61 Score=22.89 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=22.0
Q ss_pred EEeccCCEEEEEeecCcchhhhhhhhhhhhcCcchH-HHHHHHhhc
Q 033120 78 LVNVSEKKVTLTSRYPVVVEVSKRQITAVRRNPLQK-IAIIKRIFG 122 (126)
Q Consensus 78 ~VDLe~KkVtVtg~~~~d~kV~~~qI~~i~rn~~~~-~~~ikr~~~ 122 (126)
..|++++.+.++|.++.-. -++ ..++-+| --++.||||
T Consensus 47 ~l~~E~Gev~I~G~I~si~-Y~~------~~~~~~~~~~~~~rlfr 85 (85)
T TIGR02892 47 KLDVENGQVIIKGFISELT-YSE------GNGSKEKGKGFFSRLFR 85 (85)
T ss_pred EEeccccEEEEEEEEEEEE-Ecc------cccccccccchhHHhcC
Confidence 4567777888888765411 010 1334333 358899987
No 70
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=25.33 E-value=98 Score=21.58 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=22.6
Q ss_pred EEEEEecccChhHHHHHHHH---HhcCCCceEEEEeccCCEEEEEee
Q 033120 48 EVVLSADIRCSECQKRVADM---MSKLNETESVLVNVSEKKVTLTSR 91 (126)
Q Consensus 48 ~VvLkvgMsC~hC~krVkka---LskL~GVesV~VDLe~KkVtVtg~ 91 (126)
+|++--+..|.||.+-.... +++. ++.++|.+...
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~~~~~~~---------i~~~~v~~~~~ 52 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELEKLLKKY---------IDPGKVKFVFR 52 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHH---------TTTTTEEEEEE
T ss_pred EEEEEECCCCHhHHHHHHHHhhhhhhc---------cCCCceEEEEE
Confidence 78888999999999864443 3332 24456666665
No 71
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=25.18 E-value=63 Score=22.05 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=15.1
Q ss_pred EEEEEecccChhHHHHHHHHHhc
Q 033120 48 EVVLSADIRCSECQKRVADMMSK 70 (126)
Q Consensus 48 ~VvLkvgMsC~hC~krVkkaLsk 70 (126)
+|+.--+..|.||.+- ...|.+
T Consensus 8 ~i~~f~D~~Cp~C~~~-~~~l~~ 29 (154)
T cd03023 8 TIVEFFDYNCGYCKKL-APELEK 29 (154)
T ss_pred EEEEEECCCChhHHHh-hHHHHH
Confidence 5666679999999864 334443
No 72
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=25.10 E-value=75 Score=23.55 Aligned_cols=23 Identities=13% Similarity=0.413 Sum_probs=19.0
Q ss_pred cccChhHHHHHHHHHhcCCCceEE
Q 033120 54 DIRCSECQKRVADMMSKLNETESV 77 (126)
Q Consensus 54 gMsC~hC~krVkkaLskL~GVesV 77 (126)
...|..|+.++++.|.. .||.-=
T Consensus 18 ~~qC~~cA~Al~~~L~~-~gI~Gk 40 (100)
T PF15643_consen 18 IFQCVECASALKQFLKQ-AGIPGK 40 (100)
T ss_pred ceehHHHHHHHHHHHHH-CCCCce
Confidence 56899999999999988 477543
No 73
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=24.60 E-value=2.2e+02 Score=19.47 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=30.1
Q ss_pred CceeeEEEEEecccChhHHHHHHHHHhcCCCceEEEEe
Q 033120 43 MPLVQEVVLSADIRCSECQKRVADMMSKLNETESVLVN 80 (126)
Q Consensus 43 ~p~~Q~VvLkvgMsC~hC~krVkkaLskL~GVesV~VD 80 (126)
-|.+..+.+.++ + +.....+.+-|.|+.+|-.|+++
T Consensus 41 ~~~~sriti~v~-~-~~~i~ql~kQL~KL~dV~~V~~~ 76 (76)
T PRK11152 41 DAQNINIELTVA-S-ERPIDLLSSQLNKLVDVAHVEIL 76 (76)
T ss_pred CCCEEEEEEEEC-C-CchHHHHHHHHhcCcCeEEEEEC
Confidence 356777888886 3 99999999999999999998874
No 74
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=24.46 E-value=1.9e+02 Score=21.70 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCceEEEEeccCCEEEEEeecCcchhhhhhhhhhh--hcCcchHHHHHHHhhc
Q 033120 62 KRVADMMSKLNETESVLVNVSEKKVTLTSRYPVVVEVSKRQITAV--RRNPLQKIAIIKRIFG 122 (126)
Q Consensus 62 krVkkaLskL~GVesV~VDLe~KkVtVtg~~~~d~kV~~~qI~~i--~rn~~~~~~~ikr~~~ 122 (126)
..++++-..+ |+++++++.--.-++++.+.+.+ ....+..+ +-.-|.|++-+-+|-|
T Consensus 17 ~~~~ria~~~-G~~~~~~~v~~t~i~is~~~~~~---~~t~~~~v~~~~~nl~~l~~v~~l~~ 75 (193)
T PF06738_consen 17 DTMQRIARAL-GLEDVEVFVTPTGIFISFDDDGE---PRTRVRRVPPRGVNLDKLAAVNRLSR 75 (193)
T ss_pred HHHHHHHHHc-CCCeeEEEEecCEEEEEEecCCc---ceEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 3444444444 99999999999999999942222 22222222 3345778887776654
No 75
>PRK10743 heat shock protein IbpA; Provisional
Probab=24.22 E-value=66 Score=24.12 Aligned_cols=25 Identities=0% Similarity=0.022 Sum_probs=20.3
Q ss_pred cCCCc--eEEEEeccCCEEEEEeecCc
Q 033120 70 KLNET--ESVLVNVSEKKVTLTSRYPV 94 (126)
Q Consensus 70 kL~GV--esV~VDLe~KkVtVtg~~~~ 94 (126)
.|||| ++++|+++++.+++.|....
T Consensus 52 elPGv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 52 AVAGFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred ECCCCCHHHeEEEEECCEEEEEEEECc
Confidence 45887 57999999999999998433
No 76
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=23.96 E-value=2.1e+02 Score=19.87 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=24.2
Q ss_pred ceeeEEEEEecccChhHHHHHHHHHhcC------CCceEEEEe
Q 033120 44 PLVQEVVLSADIRCSECQKRVADMMSKL------NETESVLVN 80 (126)
Q Consensus 44 p~~Q~VvLkvgMsC~hC~krVkkaLskL------~GVesV~VD 80 (126)
-+...|.+.+...|..|..... .|.++ .||.-+-|.
T Consensus 28 gk~~vv~f~~~~~Cp~C~~~~p-~l~~l~~~~~~~~v~~v~v~ 69 (146)
T PF08534_consen 28 GKPVVVNFWASAWCPPCRKELP-YLNELQEKYKDKGVDVVGVS 69 (146)
T ss_dssp TSEEEEEEESTTTSHHHHHHHH-HHHHHHHHHHTTTCEEEEEE
T ss_pred CCeEEEEEEccCCCCcchhhhh-hHHhhhhhhccCceEEEEec
Confidence 4556777788889999998774 33333 466666553
No 77
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=23.89 E-value=1.9e+02 Score=19.13 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=21.7
Q ss_pred EEEEecccChhHHHHHHHHHhcC----CCceEEEEecc
Q 033120 49 VVLSADIRCSECQKRVADMMSKL----NETESVLVNVS 82 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL----~GVesV~VDLe 82 (126)
|++-.--.|.+|.+ +++.|.++ +|+.-.++|+.
T Consensus 2 V~vys~~~Cp~C~~-ak~~L~~~~~~~~~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVR-AKQLAEKLAIERADFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHH-HHHHHHHhCcccCCCcEEEEECC
Confidence 45555668999976 56677765 35566666655
No 78
>PF04324 Fer2_BFD: BFD-like [2Fe-2S] binding domain; InterPro: IPR007419 The two Fe ions are each coordinated by two conserved cysteine residues. This domain occurs alone in small proteins such as bacterioferritin-associated ferredoxin (BFD, P13655 from SWISSPROT). The function of BFD is not known, but it may be a general redox and/or regulatory component involved in the iron storage or mobilisation functions of bacterioferritin in bacteria []. This domain is also found in nitrate reductase proteins in association with the nitrite and sulphite reductase 4Fe-4S domain (IPR006067 from INTERPRO), nitrite/sulphite reductase ferredoxin-like half domain (IPR005117 from INTERPRO) and pyridine nucleotide-disulphide oxidoreductase (IPR001327 from INTERPRO). It is also found in NifU nitrogen fixation proteins, in association with NifU-like N-terminal domain (IPR002871 from INTERPRO) and C-terminal domain (IPR001075 from INTERPRO).; PDB: 2HU9_A.
Probab=23.43 E-value=29 Score=21.51 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=4.5
Q ss_pred EecccChhHHHHHHHHHhc
Q 033120 52 SADIRCSECQKRVADMMSK 70 (126)
Q Consensus 52 kvgMsC~hC~krVkkaLsk 70 (126)
.+|..|.+|...|++.|++
T Consensus 35 ~~g~~Cg~C~~~v~~ll~e 53 (55)
T PF04324_consen 35 GAGTGCGSCVPEVKDLLAE 53 (55)
T ss_dssp TTSS-TH------------
T ss_pred CCCCCCCCccccccccccc
Confidence 3488999999999988865
No 79
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=23.40 E-value=1.6e+02 Score=17.05 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=21.3
Q ss_pred EEEEecccChhHHHHHHHHHhcCCCceEEEEeccC
Q 033120 49 VVLSADIRCSECQKRVADMMSKLNETESVLVNVSE 83 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~ 83 (126)
|+|-..-.|..|.+ ++..|.+. |+.=.++|+.+
T Consensus 2 v~ly~~~~Cp~C~~-~~~~L~~~-~i~~~~~di~~ 34 (72)
T cd02066 2 VVVFSKSTCPYCKR-AKRLLESL-GIEFEEIDILE 34 (72)
T ss_pred EEEEECCCCHHHHH-HHHHHHHc-CCcEEEEECCC
Confidence 44555566999975 66778876 56555555543
No 80
>PRK10638 glutaredoxin 3; Provisional
Probab=23.19 E-value=1.9e+02 Score=18.67 Aligned_cols=33 Identities=9% Similarity=0.292 Sum_probs=24.4
Q ss_pred EEEEEecccChhHHHHHHHHHhcCCCceEEEEecc
Q 033120 48 EVVLSADIRCSECQKRVADMMSKLNETESVLVNVS 82 (126)
Q Consensus 48 ~VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe 82 (126)
.|+|-.--.|..|.+ +++.|.+. |+.=..+|+.
T Consensus 3 ~v~ly~~~~Cp~C~~-a~~~L~~~-gi~y~~~dv~ 35 (83)
T PRK10638 3 NVEIYTKATCPFCHR-AKALLNSK-GVSFQEIPID 35 (83)
T ss_pred cEEEEECCCChhHHH-HHHHHHHc-CCCcEEEECC
Confidence 466777888999975 66788775 8776666664
No 81
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=22.62 E-value=1.8e+02 Score=19.98 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=19.4
Q ss_pred ccChhHHHHHHHHHhcCCCceEEEEecc
Q 033120 55 IRCSECQKRVADMMSKLNETESVLVNVS 82 (126)
Q Consensus 55 MsC~hC~krVkkaLskL~GVesV~VDLe 82 (126)
-.|..|.+ +++.|.+. ||.=.++|+.
T Consensus 25 ~~Cp~C~~-ak~lL~~~-~i~~~~~di~ 50 (97)
T TIGR00365 25 PQCGFSAR-AVQILKAC-GVPFAYVNVL 50 (97)
T ss_pred CCCchHHH-HHHHHHHc-CCCEEEEECC
Confidence 46999975 67888886 8876666664
No 82
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=22.14 E-value=2e+02 Score=21.87 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=20.4
Q ss_pred cChhHHHHHHHHHhcCCCceEEEEeccC
Q 033120 56 RCSECQKRVADMMSKLNETESVLVNVSE 83 (126)
Q Consensus 56 sC~hC~krVkkaLskL~GVesV~VDLe~ 83 (126)
+|+.| .+|++.|.+. ||.=-++|+..
T Consensus 15 t~~~C-~~ak~iL~~~-~V~~~e~DVs~ 40 (147)
T cd03031 15 TFEDC-NNVRAILESF-RVKFDERDVSM 40 (147)
T ss_pred cChhH-HHHHHHHHHC-CCcEEEEECCC
Confidence 89999 5689999997 77766666653
No 83
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=21.74 E-value=1.5e+02 Score=25.72 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=28.5
Q ss_pred eEEEEEecccChhHHHHHHHHHhcCCCceEEEEeccCC
Q 033120 47 QEVVLSADIRCSECQKRVADMMSKLNETESVLVNVSEK 84 (126)
Q Consensus 47 Q~VvLkvgMsC~hC~krVkkaLskL~GVesV~VDLe~K 84 (126)
+.|++-.--.|.+|.+ +++.|.+. ||.=..+|+++.
T Consensus 2 ~~V~vys~~~Cp~C~~-aK~~L~~~-gi~~~~idi~~~ 37 (410)
T PRK12759 2 VEVRIYTKTNCPFCDL-AKSWFGAN-DIPFTQISLDDD 37 (410)
T ss_pred CcEEEEeCCCCHHHHH-HHHHHHHC-CCCeEEEECCCC
Confidence 4678888889999975 68899985 898777777643
No 84
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=21.60 E-value=1.1e+02 Score=17.95 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCceEEE
Q 033120 61 QKRVADMMSKLNETESVL 78 (126)
Q Consensus 61 ~krVkkaLskL~GVesV~ 78 (126)
...+.+.|.+++||.+|.
T Consensus 52 ~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 52 PEEVLEELKALPGIIRVR 69 (71)
T ss_pred CHHHHHHHHcCCCeEEEE
Confidence 458999999999999875
No 85
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=21.51 E-value=93 Score=19.93 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=24.6
Q ss_pred eeeEEEEEecccChhHHHHHHHHHhcCCCceEEE
Q 033120 45 LVQEVVLSADIRCSECQKRVADMMSKLNETESVL 78 (126)
Q Consensus 45 ~~Q~VvLkvgMsC~hC~krVkkaLskL~GVesV~ 78 (126)
...++.|.+...=-.=-..+-+.|.+++||.+|+
T Consensus 46 ~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 46 GTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred CEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 3456666666665555567888899999999875
No 86
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=21.10 E-value=79 Score=24.02 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=19.4
Q ss_pred cCCCc--eEEEEeccCCEEEEEeec
Q 033120 70 KLNET--ESVLVNVSEKKVTLTSRY 92 (126)
Q Consensus 70 kL~GV--esV~VDLe~KkVtVtg~~ 92 (126)
.+||| ++++|+++++.++|.|..
T Consensus 50 dlPGv~kedi~V~v~~~~LtI~ge~ 74 (142)
T PRK11597 50 ALAGFRQEDLDIQLEGTRLTVKGTP 74 (142)
T ss_pred EeCCCCHHHeEEEEECCEEEEEEEE
Confidence 45787 579999999999999984
No 87
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=20.91 E-value=36 Score=27.57 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=25.0
Q ss_pred ceeeEEEEEecccChhHHHHHHHHHhcC
Q 033120 44 PLVQEVVLSADIRCSECQKRVADMMSKL 71 (126)
Q Consensus 44 p~~Q~VvLkvgMsC~hC~krVkkaLskL 71 (126)
+.+++|-.|..+-|..|.+++++.++..
T Consensus 152 nSl~dvDrKs~~fC~~C~~kL~~~l~~~ 179 (181)
T COG1913 152 NSLRDVDRKSPNFCNSCLRKLERKLKYS 179 (181)
T ss_pred ccHHhhhccchhhhHHHHHHHHHhhccC
Confidence 4688999999999999999999998764
No 88
>PHA02125 thioredoxin-like protein
Probab=20.71 E-value=2e+02 Score=18.30 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=18.2
Q ss_pred EEEEecccChhHHHHHHHHHhcCCCceEEEEec
Q 033120 49 VVLSADIRCSECQKRVADMMSKLNETESVLVNV 81 (126)
Q Consensus 49 VvLkvgMsC~hC~krVkkaLskL~GVesV~VDL 81 (126)
|++--.=.|.+|.. ++..|.+++ +.-++||.
T Consensus 2 iv~f~a~wC~~Ck~-~~~~l~~~~-~~~~~vd~ 32 (75)
T PHA02125 2 IYLFGAEWCANCKM-VKPMLANVE-YTYVDVDT 32 (75)
T ss_pred EEEEECCCCHhHHH-HHHHHHHHh-heEEeeeC
Confidence 34445567999984 666676652 34444443
No 89
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=20.18 E-value=87 Score=18.78 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHhcCCCc
Q 033120 58 SECQKRVADMMSKLNET 74 (126)
Q Consensus 58 ~hC~krVkkaLskL~GV 74 (126)
..|...|.+.|+..+|+
T Consensus 8 ~~C~~Ev~~fL~~~~~~ 24 (43)
T PF07527_consen 8 SECLNEVSRFLSSVEGV 24 (43)
T ss_dssp HHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 37999999999999888
Done!