Query 033121
Match_columns 126
No_of_seqs 113 out of 858
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 10:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 99.9 6.2E-22 1.3E-26 169.7 12.3 108 1-108 460-567 (569)
2 TIGR02732 zeta_caro_desat caro 99.8 2E-20 4.3E-25 156.8 10.3 91 1-91 384-474 (474)
3 PLN02612 phytoene desaturase 99.7 2.5E-17 5.4E-22 141.0 9.4 98 2-99 451-553 (567)
4 TIGR02731 phytoene_desat phyto 99.7 4.9E-17 1.1E-21 134.2 9.5 90 2-91 360-453 (453)
5 TIGR03467 HpnE squalene-associ 99.7 3.1E-16 6.7E-21 126.1 10.0 91 2-92 329-419 (419)
6 PLN02268 probable polyamine ox 99.6 2.3E-15 5E-20 123.6 7.4 91 2-94 337-434 (435)
7 PLN02676 polyamine oxidase 99.6 1.1E-14 2.3E-19 122.9 8.1 94 2-96 375-475 (487)
8 PRK07233 hypothetical protein; 99.5 7.1E-14 1.5E-18 113.3 10.0 93 2-94 339-431 (434)
9 PLN02568 polyamine oxidase 99.5 1.6E-13 3.5E-18 117.2 7.5 93 2-94 402-535 (539)
10 PLN03000 amine oxidase 99.5 1.6E-13 3.4E-18 122.5 7.6 99 2-100 520-629 (881)
11 PLN02976 amine oxidase 99.4 2E-13 4.3E-18 126.4 8.2 95 2-96 1086-1188(1713)
12 PF01593 Amino_oxidase: Flavin 99.4 1.5E-13 3.2E-18 108.3 4.3 90 2-91 353-450 (450)
13 PLN02529 lysine-specific histo 99.4 9.4E-13 2E-17 116.2 7.3 95 2-96 496-600 (738)
14 PLN02328 lysine-specific histo 99.4 1.8E-12 3.9E-17 115.2 7.9 95 2-96 576-681 (808)
15 KOG0029 Amine oxidase [Seconda 99.3 1.2E-11 2.6E-16 105.2 8.2 95 2-96 359-461 (501)
16 COG1231 Monoamine oxidase [Ami 99.2 7.4E-11 1.6E-15 98.8 8.8 93 2-94 348-447 (450)
17 COG3349 Uncharacterized conser 99.1 1.9E-10 4.1E-15 97.4 6.9 93 2-95 372-464 (485)
18 PLN02576 protoporphyrinogen ox 99.0 2.8E-10 6E-15 94.9 5.1 91 2-95 393-488 (496)
19 PRK11883 protoporphyrinogen ox 99.0 4.9E-10 1.1E-14 91.6 6.2 85 2-92 362-450 (451)
20 PRK12416 protoporphyrinogen ox 99.0 7.5E-10 1.6E-14 91.8 6.8 88 2-94 370-461 (463)
21 TIGR00562 proto_IX_ox protopor 99.0 1.5E-09 3.2E-14 89.5 6.9 88 2-94 369-460 (462)
22 PRK07208 hypothetical protein; 98.8 7.6E-09 1.6E-13 86.0 4.8 90 2-93 368-460 (479)
23 KOG0685 Flavin-containing amin 98.7 3.6E-08 7.9E-13 83.3 7.8 94 2-95 384-492 (498)
24 TIGR02730 carot_isom carotene 98.3 3.3E-06 7.1E-11 71.0 9.3 84 6-93 394-491 (493)
25 TIGR02733 desat_CrtD C-3',4' d 98.2 9.4E-06 2E-10 68.0 9.4 84 6-93 394-491 (492)
26 COG3380 Predicted NAD/FAD-depe 98.2 3.1E-06 6.8E-11 67.9 5.1 86 1-93 245-330 (331)
27 TIGR02734 crtI_fam phytoene de 98.1 1.2E-05 2.7E-10 67.3 8.8 85 6-94 392-492 (502)
28 COG1232 HemY Protoporphyrinoge 98.0 6E-06 1.3E-10 69.7 3.3 84 2-91 355-443 (444)
29 KOG4254 Phytoene desaturase [C 96.5 0.0091 2E-07 51.2 6.6 86 5-96 444-548 (561)
30 KOG1276 Protoporphyrinogen oxi 96.2 0.0038 8.3E-08 53.0 2.8 85 2-91 401-490 (491)
31 PRK04176 ribulose-1,5-biphosph 93.8 0.085 1.8E-06 41.3 3.8 38 58-95 213-255 (257)
32 TIGR00292 thiazole biosynthesi 93.7 0.083 1.8E-06 41.4 3.7 37 58-94 212-253 (254)
33 COG1233 Phytoene dehydrogenase 93.4 0.39 8.4E-06 40.8 7.4 39 50-91 440-480 (487)
34 TIGR01292 TRX_reduct thioredox 92.8 0.15 3.2E-06 39.1 3.8 39 54-93 261-299 (300)
35 PRK12831 putative oxidoreducta 92.5 0.22 4.8E-06 42.0 4.8 40 54-95 422-461 (464)
36 PRK12769 putative oxidoreducta 92.3 0.24 5.3E-06 43.4 4.9 40 54-95 613-652 (654)
37 PRK12809 putative oxidoreducta 92.3 0.21 4.6E-06 43.8 4.5 42 54-97 596-637 (639)
38 TIGR01316 gltA glutamate synth 92.2 0.24 5.1E-06 41.5 4.5 38 54-93 411-448 (449)
39 PRK12810 gltD glutamate syntha 92.0 0.33 7.1E-06 40.9 5.2 41 53-95 425-465 (471)
40 TIGR03862 flavo_PP4765 unchara 91.4 0.25 5.5E-06 41.0 3.8 37 58-94 336-375 (376)
41 PLN02661 Putative thiazole syn 91.4 0.25 5.5E-06 40.9 3.7 39 58-96 286-329 (357)
42 PRK12771 putative glutamate sy 90.7 0.43 9.4E-06 41.1 4.7 40 54-95 405-444 (564)
43 COG1635 THI4 Ribulose 1,5-bisp 90.7 0.24 5.2E-06 39.1 2.8 38 58-95 218-260 (262)
44 PRK10262 thioredoxin reductase 90.5 0.13 2.8E-06 40.7 1.2 44 54-98 275-318 (321)
45 TIGR01318 gltD_gamma_fam gluta 90.5 0.57 1.2E-05 39.5 5.2 40 54-95 427-466 (467)
46 PRK10157 putative oxidoreducta 90.2 0.45 9.8E-06 39.6 4.3 38 59-96 295-337 (428)
47 PRK12770 putative glutamate sy 90.0 0.7 1.5E-05 37.2 5.1 40 54-95 311-350 (352)
48 PRK12775 putative trifunctiona 89.9 0.57 1.2E-05 43.5 5.1 41 54-96 716-756 (1006)
49 TIGR01317 GOGAT_sm_gam glutama 89.9 0.56 1.2E-05 39.8 4.7 40 54-95 440-479 (485)
50 PRK12778 putative bifunctional 89.8 0.59 1.3E-05 41.7 5.0 40 54-95 711-750 (752)
51 PRK11749 dihydropyrimidine deh 89.7 0.66 1.4E-05 38.8 4.9 40 54-95 413-452 (457)
52 TIGR01816 sdhA_forward succina 89.4 0.59 1.3E-05 40.5 4.5 38 56-93 351-395 (565)
53 PRK09078 sdhA succinate dehydr 89.4 0.65 1.4E-05 40.5 4.8 39 55-93 382-427 (598)
54 PRK12814 putative NADPH-depend 89.1 0.75 1.6E-05 40.5 5.0 41 54-96 462-502 (652)
55 PRK13984 putative oxidoreducta 89.0 0.77 1.7E-05 39.8 5.0 39 54-95 564-602 (604)
56 PRK12779 putative bifunctional 88.8 0.62 1.4E-05 43.0 4.5 41 54-96 588-628 (944)
57 PRK06452 sdhA succinate dehydr 88.6 0.85 1.8E-05 39.5 5.0 41 54-94 355-403 (566)
58 TIGR00551 nadB L-aspartate oxi 88.4 0.81 1.8E-05 38.7 4.6 41 53-93 341-388 (488)
59 PRK08205 sdhA succinate dehydr 88.2 0.8 1.7E-05 39.8 4.6 39 55-93 372-417 (583)
60 PRK06263 sdhA succinate dehydr 87.8 0.96 2.1E-05 38.8 4.8 42 53-94 356-403 (543)
61 PLN00128 Succinate dehydrogena 87.8 0.88 1.9E-05 40.2 4.6 38 56-93 421-465 (635)
62 PRK06175 L-aspartate oxidase; 87.5 1.2 2.7E-05 37.2 5.1 41 53-93 339-386 (433)
63 TIGR03315 Se_ygfK putative sel 87.3 0.39 8.5E-06 44.7 2.2 41 54-96 801-841 (1012)
64 PRK09231 fumarate reductase fl 87.1 1.1 2.4E-05 39.0 4.7 42 53-94 366-414 (582)
65 PRK09077 L-aspartate oxidase; 87.0 1 2.2E-05 38.7 4.5 41 53-93 361-408 (536)
66 PRK08274 tricarballylate dehyd 86.9 0.81 1.7E-05 38.1 3.7 40 56-95 416-462 (466)
67 PTZ00139 Succinate dehydrogena 86.5 1.1 2.3E-05 39.4 4.4 39 55-93 399-444 (617)
68 TIGR01812 sdhA_frdA_Gneg succi 86.3 1.2 2.5E-05 38.4 4.4 39 56-94 357-402 (566)
69 PRK09853 putative selenate red 86.3 1.1 2.4E-05 41.9 4.5 40 54-95 803-842 (1019)
70 TIGR01176 fum_red_Fp fumarate 85.9 1.2 2.6E-05 38.8 4.4 41 53-93 365-412 (580)
71 PRK08071 L-aspartate oxidase; 85.7 1.3 2.9E-05 37.7 4.5 41 53-93 340-387 (510)
72 PF03486 HI0933_like: HI0933-l 85.6 0.78 1.7E-05 38.5 3.0 32 57-88 374-408 (409)
73 PRK08641 sdhA succinate dehydr 85.6 1.5 3.2E-05 38.2 4.8 40 54-93 364-409 (589)
74 PRK05945 sdhA succinate dehydr 85.6 1.3 2.8E-05 38.4 4.4 39 55-93 367-412 (575)
75 PRK10015 oxidoreductase; Provi 85.4 1.3 2.9E-05 36.8 4.3 37 59-95 295-336 (429)
76 TIGR01421 gluta_reduc_1 glutat 85.3 1.6 3.4E-05 36.6 4.7 36 54-91 291-326 (450)
77 PRK06116 glutathione reductase 85.3 1.6 3.4E-05 36.3 4.7 38 53-92 290-327 (450)
78 PRK06069 sdhA succinate dehydr 85.1 1.2 2.6E-05 38.5 4.0 38 56-93 369-413 (577)
79 PRK08958 sdhA succinate dehydr 85.0 1.6 3.5E-05 38.0 4.7 38 56-93 378-422 (588)
80 PRK07512 L-aspartate oxidase; 84.9 1.6 3.5E-05 37.3 4.6 41 53-93 349-396 (513)
81 PRK05249 soluble pyridine nucl 84.6 1.5 3.2E-05 36.4 4.2 37 53-91 297-333 (461)
82 COG0644 FixC Dehydrogenases (f 84.4 3.3 7.2E-05 33.9 6.1 37 59-95 269-308 (396)
83 TIGR02028 ChlP geranylgeranyl 84.4 1.9 4.2E-05 35.4 4.8 37 59-95 270-309 (398)
84 PRK08401 L-aspartate oxidase; 84.3 1.8 3.9E-05 36.5 4.6 41 53-93 318-365 (466)
85 PRK12842 putative succinate de 84.1 1.7 3.7E-05 37.6 4.4 39 55-93 521-566 (574)
86 PRK07843 3-ketosteroid-delta-1 84.0 1.4 2.9E-05 38.2 3.8 38 55-92 511-555 (557)
87 PRK05675 sdhA succinate dehydr 84.0 2 4.4E-05 37.3 4.9 38 56-93 360-404 (570)
88 COG2081 Predicted flavoprotein 83.9 1.3 2.7E-05 37.5 3.4 37 57-93 367-406 (408)
89 PRK12839 hypothetical protein; 83.4 1.5 3.3E-05 38.1 3.9 40 55-94 522-568 (572)
90 COG2509 Uncharacterized FAD-de 83.4 1.4 3E-05 37.9 3.5 40 54-95 445-484 (486)
91 PRK14727 putative mercuric red 83.3 1.7 3.6E-05 36.7 4.0 38 53-92 308-345 (479)
92 PTZ00318 NADH dehydrogenase-li 83.3 2.7 5.9E-05 34.8 5.2 40 56-95 306-348 (424)
93 TIGR03143 AhpF_homolog putativ 83.2 1.9 4.2E-05 37.2 4.4 42 54-96 269-310 (555)
94 PRK12844 3-ketosteroid-delta-1 82.5 2 4.4E-05 37.1 4.3 39 55-93 504-549 (557)
95 PRK06134 putative FAD-binding 82.4 1.6 3.5E-05 37.9 3.7 41 55-95 525-572 (581)
96 TIGR02032 GG-red-SF geranylger 82.3 9.7 0.00021 28.7 7.6 32 59-90 261-295 (295)
97 PLN02815 L-aspartate oxidase 82.3 2.5 5.4E-05 37.1 4.8 42 52-93 384-432 (594)
98 PRK15317 alkyl hydroperoxide r 82.2 1.2 2.6E-05 37.9 2.8 43 52-95 470-512 (517)
99 PRK07057 sdhA succinate dehydr 82.2 2 4.3E-05 37.5 4.2 38 56-93 381-425 (591)
100 PLN00093 geranylgeranyl diphos 82.2 2.9 6.3E-05 35.2 5.0 37 58-94 308-347 (450)
101 TIGR03169 Nterm_to_SelD pyridi 82.1 3.2 7E-05 33.2 5.1 42 54-95 266-311 (364)
102 PRK12835 3-ketosteroid-delta-1 82.0 2.4 5.2E-05 36.9 4.6 39 55-93 524-569 (584)
103 PRK13748 putative mercuric red 81.8 2.1 4.4E-05 36.6 4.0 37 53-91 390-426 (561)
104 PRK07804 L-aspartate oxidase; 81.7 2.7 5.9E-05 36.2 4.8 41 53-93 365-412 (541)
105 PRK07121 hypothetical protein; 81.5 2 4.4E-05 36.2 3.9 39 55-93 446-490 (492)
106 PF01134 GIDA: Glucose inhibit 81.2 7.3 0.00016 32.7 7.0 73 13-93 314-387 (392)
107 TIGR01811 sdhA_Bsu succinate d 80.9 2.6 5.6E-05 36.9 4.4 41 53-93 378-424 (603)
108 TIGR01424 gluta_reduc_2 glutat 80.8 2.9 6.3E-05 34.8 4.5 38 53-92 288-325 (446)
109 TIGR02023 BchP-ChlP geranylger 80.8 3.3 7.2E-05 33.6 4.8 37 59-95 264-303 (388)
110 PRK04965 NADH:flavorubredoxin 80.8 2.4 5.2E-05 34.3 3.9 40 53-92 260-301 (377)
111 PRK06292 dihydrolipoamide dehy 80.6 2.5 5.3E-05 35.1 4.0 38 53-92 293-330 (460)
112 PRK12843 putative FAD-binding 80.6 2.7 5.9E-05 36.4 4.4 40 55-94 526-572 (578)
113 TIGR00275 flavoprotein, HI0933 80.5 1.3 2.8E-05 36.5 2.3 31 57-87 366-399 (400)
114 PRK05335 tRNA (uracil-5-)-meth 80.4 7.9 0.00017 33.0 7.0 33 58-93 330-362 (436)
115 PRK12845 3-ketosteroid-delta-1 80.4 2.2 4.8E-05 37.1 3.8 37 55-91 519-562 (564)
116 PRK07803 sdhA succinate dehydr 80.3 2.5 5.5E-05 37.1 4.2 39 55-93 402-446 (626)
117 PRK14694 putative mercuric red 80.3 2.7 5.8E-05 35.2 4.2 37 53-91 297-333 (468)
118 PRK09564 coenzyme A disulfide 80.1 2.2 4.8E-05 35.1 3.6 40 53-92 269-316 (444)
119 PRK06467 dihydrolipoamide dehy 80.1 2.7 5.9E-05 35.3 4.2 38 53-92 299-336 (471)
120 TIGR01423 trypano_reduc trypan 79.6 3.4 7.3E-05 35.2 4.6 39 52-92 312-350 (486)
121 PRK09754 phenylpropionate diox 79.5 3 6.5E-05 34.0 4.2 40 53-92 262-308 (396)
122 TIGR03140 AhpF alkyl hydropero 79.5 0.92 2E-05 38.7 1.2 41 53-94 472-512 (515)
123 PRK06854 adenylylsulfate reduc 79.2 4.6 9.9E-05 35.4 5.4 43 52-94 389-431 (608)
124 PRK08626 fumarate reductase fl 79.1 4.5 9.8E-05 35.9 5.4 41 54-94 381-429 (657)
125 PRK07395 L-aspartate oxidase; 79.0 3.1 6.7E-05 36.1 4.2 39 53-91 355-400 (553)
126 PRK08275 putative oxidoreducta 78.4 3.4 7.5E-05 35.6 4.3 41 53-94 364-404 (554)
127 PRK06416 dihydrolipoamide dehy 78.4 3.5 7.6E-05 34.3 4.3 38 53-92 296-333 (462)
128 PRK07818 dihydrolipoamide dehy 78.4 3.5 7.6E-05 34.5 4.3 38 53-92 298-335 (466)
129 TIGR02053 MerA mercuric reduct 78.1 3.6 7.9E-05 34.2 4.3 38 53-92 291-328 (463)
130 PRK06370 mercuric reductase; V 77.8 4.2 9.1E-05 33.9 4.6 38 53-92 296-333 (463)
131 TIGR02485 CobZ_N-term precorri 77.7 4.2 9.2E-05 33.6 4.5 39 55-93 384-429 (432)
132 PLN02507 glutathione reductase 77.7 4 8.6E-05 34.8 4.5 39 52-92 324-362 (499)
133 TIGR01372 soxA sarcosine oxida 77.6 3.5 7.7E-05 38.2 4.4 38 56-96 436-473 (985)
134 COG1249 Lpd Pyruvate/2-oxoglut 77.5 3.8 8.3E-05 34.9 4.3 37 54-92 298-334 (454)
135 PRK06481 fumarate reductase fl 77.2 3.7 8E-05 35.0 4.2 39 55-93 458-502 (506)
136 COG0492 TrxB Thioredoxin reduc 77.1 2.4 5.3E-05 34.2 2.9 42 53-95 260-301 (305)
137 COG0029 NadB Aspartate oxidase 76.8 3.1 6.7E-05 36.2 3.5 42 53-94 349-397 (518)
138 PRK06327 dihydrolipoamide dehy 76.8 4.2 9E-05 34.2 4.3 38 53-92 309-346 (475)
139 PRK12837 3-ketosteroid-delta-1 76.3 2.8 6.1E-05 35.8 3.2 38 55-92 466-510 (513)
140 TIGR00137 gid_trmFO tRNA:m(5)U 76.0 6.6 0.00014 33.4 5.3 65 15-86 289-354 (433)
141 TIGR01350 lipoamide_DH dihydro 76.0 4.6 0.0001 33.5 4.3 38 54-93 295-332 (461)
142 PRK06912 acoL dihydrolipoamide 75.7 4.2 9.1E-05 34.0 4.1 36 54-91 293-328 (458)
143 COG1252 Ndh NADH dehydrogenase 75.6 3.5 7.6E-05 34.8 3.5 45 52-96 284-333 (405)
144 PF07156 Prenylcys_lyase: Pren 75.3 7.1 0.00015 32.4 5.2 71 14-96 279-350 (368)
145 PRK12834 putative FAD-binding 75.2 3.7 8E-05 35.3 3.7 38 55-92 501-548 (549)
146 TIGR01438 TGR thioredoxin and 75.1 5.3 0.00012 33.9 4.6 39 53-92 305-343 (484)
147 PRK07845 flavoprotein disulfid 73.4 5.7 0.00012 33.3 4.3 38 53-92 299-336 (466)
148 PTZ00052 thioredoxin reductase 73.3 5.6 0.00012 33.8 4.3 37 55-92 304-340 (499)
149 PRK13512 coenzyme A disulfide 72.5 4.6 0.0001 33.6 3.5 39 53-91 264-310 (438)
150 PRK06115 dihydrolipoamide dehy 71.4 6.3 0.00014 33.1 4.1 38 53-92 300-337 (466)
151 PLN02546 glutathione reductase 70.9 6.8 0.00015 34.1 4.3 38 53-92 375-412 (558)
152 PRK13800 putative oxidoreducta 70.8 5.6 0.00012 36.5 3.9 40 53-93 369-408 (897)
153 PTZ00058 glutathione reductase 69.5 8.3 0.00018 33.6 4.5 40 53-92 360-431 (561)
154 TIGR03452 mycothione_red mycot 69.4 7.7 0.00017 32.5 4.2 38 53-92 290-327 (452)
155 PRK07846 mycothione reductase; 69.0 8.1 0.00018 32.4 4.3 38 53-92 287-324 (451)
156 TIGR03385 CoA_CoA_reduc CoA-di 68.9 5.8 0.00012 32.6 3.3 39 54-92 257-303 (427)
157 PRK07573 sdhA succinate dehydr 67.6 10 0.00022 33.5 4.8 36 53-89 414-456 (640)
158 PRK08294 phenol 2-monooxygenas 66.9 30 0.00065 30.5 7.5 27 59-85 340-369 (634)
159 PTZ00306 NADH-dependent fumara 66.7 6.8 0.00015 37.1 3.7 39 55-93 857-901 (1167)
160 PRK05976 dihydrolipoamide dehy 66.4 10 0.00022 31.8 4.3 37 53-91 305-341 (472)
161 PRK07045 putative monooxygenas 66.3 17 0.00036 29.3 5.5 36 59-94 285-323 (388)
162 TIGR02061 aprA adenosine phosp 66.1 10 0.00022 33.5 4.4 40 53-92 401-440 (614)
163 PRK08010 pyridine nucleotide-d 66.0 10 0.00022 31.3 4.3 37 53-91 279-315 (441)
164 PRK06185 hypothetical protein; 65.2 12 0.00026 30.2 4.4 52 59-110 284-338 (407)
165 PF01494 FAD_binding_3: FAD bi 64.2 14 0.0003 28.4 4.5 37 59-95 291-330 (356)
166 PRK11445 putative oxidoreducta 63.3 13 0.00028 29.8 4.3 36 59-94 264-302 (351)
167 COG1053 SdhA Succinate dehydro 62.5 16 0.00034 32.1 4.9 41 55-95 366-413 (562)
168 PRK08243 4-hydroxybenzoate 3-m 59.5 19 0.00042 29.1 4.7 35 59-93 279-316 (392)
169 PRK00711 D-amino acid dehydrog 58.7 62 0.0013 26.1 7.6 75 6-92 326-401 (416)
170 TIGR01984 UbiH 2-polyprenyl-6- 58.6 16 0.00035 29.1 4.0 35 59-93 276-313 (382)
171 COG0493 GltD NADPH-dependent g 58.5 10 0.00022 32.4 3.0 37 55-93 413-449 (457)
172 PRK08132 FAD-dependent oxidore 58.3 64 0.0014 27.5 7.9 30 59-88 299-331 (547)
173 PRK06184 hypothetical protein; 55.6 17 0.00037 30.6 3.9 32 59-90 281-315 (502)
174 TIGR00136 gidA glucose-inhibit 54.4 24 0.00052 31.5 4.7 35 51-88 349-384 (617)
175 TIGR01813 flavo_cyto_c flavocy 54.1 7.9 0.00017 31.9 1.6 32 56-87 401-438 (439)
176 PLN02463 lycopene beta cyclase 54.0 1.4E+02 0.0029 25.3 10.2 37 59-95 294-333 (447)
177 TIGR01988 Ubi-OHases Ubiquinon 53.5 23 0.0005 28.0 4.2 35 59-93 276-313 (385)
178 PRK09126 hypothetical protein; 53.3 19 0.00042 28.8 3.7 36 59-94 280-318 (392)
179 PLN02852 ferredoxin-NADP+ redu 53.1 15 0.00032 31.7 3.1 40 55-96 383-423 (491)
180 PRK05329 anaerobic glycerol-3- 53.0 17 0.00037 30.7 3.4 38 57-94 379-420 (422)
181 KOG2960 Protein involved in th 51.8 13 0.00029 29.6 2.4 43 55-97 273-320 (328)
182 PRK05192 tRNA uridine 5-carbox 51.4 44 0.00096 29.9 5.8 39 50-90 350-392 (618)
183 PRK07251 pyridine nucleotide-d 50.8 28 0.0006 28.7 4.4 37 53-91 278-314 (438)
184 COG0445 GidA Flavin-dependent 50.2 50 0.0011 29.5 5.9 71 12-90 317-392 (621)
185 PRK06847 hypothetical protein; 48.8 35 0.00076 27.1 4.6 34 59-92 282-318 (375)
186 PRK07538 hypothetical protein; 48.0 35 0.00076 27.8 4.5 34 59-92 297-333 (413)
187 TIGR01373 soxB sarcosine oxida 47.4 1.4E+02 0.0031 24.0 8.0 77 5-92 308-384 (407)
188 PRK05732 2-octaprenyl-6-methox 47.2 29 0.00064 27.7 3.9 34 59-92 282-318 (395)
189 TIGR01790 carotene-cycl lycope 47.1 36 0.00079 27.2 4.4 36 59-94 262-300 (388)
190 PTZ00153 lipoamide dehydrogena 45.7 34 0.00073 30.6 4.3 33 58-92 462-494 (659)
191 PRK06753 hypothetical protein; 45.5 52 0.0011 26.1 5.1 33 59-91 270-305 (373)
192 TIGR03329 Phn_aa_oxid putative 45.1 1.4E+02 0.003 24.9 7.7 73 7-92 318-393 (460)
193 PF06739 SBBP: Beta-propeller 44.8 18 0.00039 20.0 1.7 17 57-73 22-38 (38)
194 PRK07333 2-octaprenyl-6-methox 44.2 35 0.00076 27.4 3.9 36 59-94 280-318 (403)
195 COG1206 Gid NAD(FAD)-utilizing 42.6 24 0.00051 29.8 2.7 68 19-91 298-368 (439)
196 PRK14989 nitrite reductase sub 42.0 38 0.00082 31.2 4.1 40 53-92 268-309 (847)
197 TIGR02374 nitri_red_nirB nitri 41.9 41 0.00089 30.5 4.3 40 53-92 259-300 (785)
198 PRK07190 hypothetical protein; 41.6 43 0.00094 28.5 4.2 27 59-85 275-304 (487)
199 PRK08244 hypothetical protein; 41.4 29 0.00062 29.1 3.1 33 59-91 272-307 (493)
200 PRK06996 hypothetical protein; 39.6 55 0.0012 26.5 4.4 34 59-92 291-327 (398)
201 COG0654 UbiH 2-polyprenyl-6-me 39.5 2E+02 0.0044 23.2 7.8 37 59-95 278-317 (387)
202 PRK07494 2-octaprenyl-6-methox 38.9 36 0.00078 27.2 3.2 34 59-92 280-316 (388)
203 TIGR02352 thiamin_ThiO glycine 37.5 1.4E+02 0.003 23.0 6.2 76 5-92 258-335 (337)
204 PRK11259 solA N-methyltryptoph 37.1 1.6E+02 0.0034 23.2 6.6 74 6-93 285-360 (376)
205 TIGR02360 pbenz_hydroxyl 4-hyd 37.1 98 0.0021 25.1 5.5 34 59-92 279-315 (390)
206 PRK07364 2-octaprenyl-6-methox 36.7 68 0.0015 25.9 4.5 35 59-93 294-331 (415)
207 PF07992 Pyr_redox_2: Pyridine 36.4 28 0.0006 24.8 2.0 18 52-69 181-198 (201)
208 PRK08020 ubiF 2-octaprenyl-3-m 35.9 62 0.0013 25.9 4.1 35 59-93 281-318 (391)
209 PRK08773 2-octaprenyl-3-methyl 35.7 61 0.0013 26.1 4.1 35 59-93 282-319 (392)
210 PRK06183 mhpA 3-(3-hydroxyphen 35.2 60 0.0013 27.7 4.1 33 59-91 286-321 (538)
211 PRK06126 hypothetical protein; 34.6 55 0.0012 27.8 3.8 33 59-91 303-338 (545)
212 TIGR01989 COQ6 Ubiquinone bios 34.1 85 0.0018 25.9 4.7 35 59-93 333-370 (437)
213 COG1148 HdrA Heterodisulfide r 33.9 52 0.0011 29.1 3.5 37 54-93 507-543 (622)
214 PF01266 DAO: FAD dependent ox 32.5 73 0.0016 24.4 3.9 68 9-88 288-357 (358)
215 PRK08850 2-octaprenyl-6-methox 32.5 81 0.0018 25.5 4.3 34 59-92 282-318 (405)
216 PRK08163 salicylate hydroxylas 32.2 1E+02 0.0022 24.7 4.8 33 59-91 286-321 (396)
217 PRK07608 ubiquinone biosynthes 32.2 61 0.0013 25.8 3.5 35 59-93 280-317 (388)
218 TIGR03219 salicylate_mono sali 32.1 1.1E+02 0.0024 24.9 5.0 33 59-91 300-335 (414)
219 TIGR03197 MnmC_Cterm tRNA U-34 29.5 2E+02 0.0044 23.0 6.2 17 7-23 256-272 (381)
220 PRK08013 oxidoreductase; Provi 29.3 88 0.0019 25.4 4.0 34 59-92 282-318 (400)
221 smart00539 NIDO Extracellular 28.6 1.5E+02 0.0032 21.5 4.7 39 4-42 20-58 (152)
222 COG0665 DadA Glycine/D-amino a 28.1 3E+02 0.0065 21.6 7.2 75 8-93 291-367 (387)
223 PRK05714 2-octaprenyl-3-methyl 28.1 1.2E+02 0.0026 24.5 4.6 34 59-92 285-321 (405)
224 PLN02697 lycopene epsilon cycl 27.9 4.1E+02 0.0088 23.2 9.7 80 3-96 330-412 (529)
225 PRK12409 D-amino acid dehydrog 27.1 2.5E+02 0.0053 22.7 6.3 74 6-92 331-405 (410)
226 COG3634 AhpF Alkyl hydroperoxi 25.3 44 0.00096 28.6 1.6 21 54-74 475-495 (520)
227 TIGR03378 glycerol3P_GlpB glyc 24.7 79 0.0017 26.9 3.0 43 49-91 372-419 (419)
228 PTZ00367 squalene epoxidase; P 24.3 3.9E+02 0.0085 23.4 7.3 34 59-92 337-373 (567)
229 PRK06617 2-octaprenyl-6-methox 23.3 1.3E+02 0.0028 24.1 4.0 32 59-90 273-307 (374)
230 PRK07588 hypothetical protein; 23.2 1.5E+02 0.0033 23.7 4.3 34 59-92 279-315 (391)
231 KOG2311 NAD/FAD-utilizing prot 22.7 1.7E+02 0.0036 26.2 4.6 28 50-79 379-407 (679)
232 PRK06834 hypothetical protein; 20.3 1.2E+02 0.0027 25.7 3.4 25 59-83 265-292 (488)
No 1
>PLN02487 zeta-carotene desaturase
Probab=99.87 E-value=6.2e-22 Score=169.75 Aligned_cols=108 Identities=77% Similarity=1.178 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCCcHHHHH
Q 033121 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYIDIMEGAS 80 (126)
Q Consensus 1 ~~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~patmeGAv 80 (126)
+.+++++|+++++++|.++||.+....+.+++++++++++|.+.||....||..+||++|||+|||||++.||+|||||+
T Consensus 460 ~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv 539 (569)
T PLN02487 460 MPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGAT 539 (569)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHH
Confidence 46899999999999999999987656788999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 033121 81 LSGRQASAYICNAREELVALRKQLAAFE 108 (126)
Q Consensus 81 ~SG~~AA~~Il~~~~~~~~~~~~~~~~~ 108 (126)
+||++||+.|++..+.+..+++++...+
T Consensus 540 ~SG~~AA~~i~~~~~~~~~~~~~~~~~~ 567 (569)
T PLN02487 540 LSGRQAAAYICEAGEELAGLRKKLAAEE 567 (569)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 9999999999999999999999987653
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.83 E-value=2e-20 Score=156.81 Aligned_cols=91 Identities=70% Similarity=1.078 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCCcHHHHH
Q 033121 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYIDIMEGAS 80 (126)
Q Consensus 1 ~~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~patmeGAv 80 (126)
+.+++++++++++++|+++||......+++++++++++++|.+.||+...+|..+||++|||+|||||++.||+|||||+
T Consensus 384 ~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv 463 (474)
T TIGR02732 384 MPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGAT 463 (474)
T ss_pred cCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHH
Confidence 35899999999999999999976556788889999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 033121 81 LSGRQASAYIC 91 (126)
Q Consensus 81 ~SG~~AA~~Il 91 (126)
+||++||+.|+
T Consensus 464 ~sG~~aA~~i~ 474 (474)
T TIGR02732 464 LSGRQAAAAIL 474 (474)
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 3
>PLN02612 phytoene desaturase
Probab=99.72 E-value=2.5e-17 Score=141.01 Aligned_cols=98 Identities=36% Similarity=0.586 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC-----CCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCCcH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQ-----GLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYIDIM 76 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~-----~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~patm 76 (126)
.++++++++.++++|.++||... ...++.+++.+.+++.|.+.||....+|.+++|++|||||||||.+.||++|
T Consensus 451 ~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~sm 530 (567)
T PLN02612 451 SRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASM 530 (567)
T ss_pred cCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhH
Confidence 46899999999999999998652 2456777788888888888899877899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Q 033121 77 EGASLSGRQASAYICNAREELVA 99 (126)
Q Consensus 77 eGAv~SG~~AA~~Il~~~~~~~~ 99 (126)
|||+.||++||++|++.++.+.+
T Consensus 531 eGAv~SG~~AA~~I~~~~~~~~~ 553 (567)
T PLN02612 531 EGAVLSGKLCAQSIVQDYELLAA 553 (567)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999998766544
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.70 E-value=4.9e-17 Score=134.21 Aligned_cols=90 Identities=40% Similarity=0.677 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC----CCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCCcHH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSS----QGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYIDIME 77 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~----~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~patme 77 (126)
.++++|+++.++++|.++||.. ....++++++.+++++.|.+.||....+|..++|++||||||||+++.||++||
T Consensus 360 ~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~e 439 (453)
T TIGR02731 360 GRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASME 439 (453)
T ss_pred cCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccccHH
Confidence 4789999999999999999852 123466777778888888778997778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 033121 78 GASLSGRQASAYIC 91 (126)
Q Consensus 78 GAv~SG~~AA~~Il 91 (126)
|||+||++||++|+
T Consensus 440 gAi~SG~~AA~~v~ 453 (453)
T TIGR02731 440 GAVLSGKLCAQAIV 453 (453)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999874
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.67 E-value=3.1e-16 Score=126.14 Aligned_cols=91 Identities=33% Similarity=0.602 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCCcHHHHHH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYIDIMEGASL 81 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~patmeGAv~ 81 (126)
.++++++++.++++|.++||......+++.++.+|+++.|.+.||....+|..++|++|||||||+++..||++||||+.
T Consensus 329 ~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~ 408 (419)
T TIGR03467 329 DLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVR 408 (419)
T ss_pred cCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCcchHHHHHH
Confidence 46899999999999999998653346778899999999888888876678878889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 033121 82 SGRQASAYICN 92 (126)
Q Consensus 82 SG~~AA~~Il~ 92 (126)
||++||++|++
T Consensus 409 SG~~aA~~i~~ 419 (419)
T TIGR03467 409 SGYQAAEAVLK 419 (419)
T ss_pred HHHHHHHHHhC
Confidence 99999999863
No 6
>PLN02268 probable polyamine oxidase
Probab=99.59 E-value=2.3e-15 Score=123.57 Aligned_cols=91 Identities=23% Similarity=0.277 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCC-----ccccC-CCCC-CCCCCCCCCCCCCEEEccccccCCCCC
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQ-----SLYHE-GPGK-DPFRPDQKTQVKNLFLAGSYTKQDYID 74 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~-----a~~~~-~pG~-~~~rp~~~tp~~~L~lAGd~t~~~~pa 74 (126)
.++++++++.++++|.++||.. ..++.+.+++|.. +.|++ .||. +...+.++.|++|||||||+|+..|++
T Consensus 337 ~~~~~e~~~~v~~~L~~~~~~~--~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g 414 (435)
T PLN02268 337 KLSDEAAANFAMSQLKKMLPDA--TEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPG 414 (435)
T ss_pred hCCHHHHHHHHHHHHHHHcCCC--CCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccc
Confidence 4789999999999999999864 4678899999974 44454 5664 334566778899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 033121 75 IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 75 tmeGAv~SG~~AA~~Il~~~ 94 (126)
+||||+.||+|||++|++.+
T Consensus 415 ~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 415 SVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred cHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998753
No 7
>PLN02676 polyamine oxidase
Probab=99.55 E-value=1.1e-14 Score=122.86 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCC-----ccccC-CCCCC-CCCCCCCCCCCCEEEccccccCCCCC
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQ-----SLYHE-GPGKD-PFRPDQKTQVKNLFLAGSYTKQDYID 74 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~-----a~~~~-~pG~~-~~rp~~~tp~~~L~lAGd~t~~~~pa 74 (126)
.++++++++.++++|+++||... ..++.+..++|.. +.|++ .||.. ...+..+.|+++|||||++|+..|++
T Consensus 375 ~~s~e~~~~~vl~~L~~~~g~~~-~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g 453 (487)
T PLN02676 375 QQPDSETKAEIMEVLRKMFGPNI-PEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNG 453 (487)
T ss_pred hCCHHHHHHHHHHHHHHHhCCCC-CCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEecccccccccc
Confidence 36889999999999999997443 4688888999964 55554 66743 34456778899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhh
Q 033121 75 IMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 75 tmeGAv~SG~~AA~~Il~~~~~ 96 (126)
+||||+.||+|||++|++.+..
T Consensus 454 ~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 454 YVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred chHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999987644
No 8
>PRK07233 hypothetical protein; Provisional
Probab=99.52 E-value=7.1e-14 Score=113.26 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCCcHHHHHH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYIDIMEGASL 81 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~patmeGAv~ 81 (126)
.++++++++.++++|.++||......++..++.+|+++.+.+.||+...+|..++|++|||||||++...++++|++|+.
T Consensus 339 ~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~ 418 (434)
T PRK07233 339 QMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVR 418 (434)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHH
Confidence 46789999999999999999664456888899999999888888877778888889999999999655556679999999
Q ss_pred HHHHHHHHHHHHH
Q 033121 82 SGRQASAYICNAR 94 (126)
Q Consensus 82 SG~~AA~~Il~~~ 94 (126)
||++||++|++.+
T Consensus 419 sG~~aA~~i~~~~ 431 (434)
T PRK07233 419 AGRRVAREILEDR 431 (434)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999998875
No 9
>PLN02568 polyamine oxidase
Probab=99.45 E-value=1.6e-13 Score=117.22 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC---------------------CCCeeEEEEEEeC-----CccccC-CCCCCC-CCCC
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQ---------------------GLEVIWSSVVKIG-----QSLYHE-GPGKDP-FRPD 53 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~---------------------~~~~~~~~v~r~~-----~a~~~~-~pG~~~-~rp~ 53 (126)
.++++++++.+++.|+++|+... ...++.+.+++|. ++.|++ .||... .+..
T Consensus 402 ~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~ 481 (539)
T PLN02568 402 KLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDR 481 (539)
T ss_pred cCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHH
Confidence 47899999999999999996321 1367889999996 466666 577543 3344
Q ss_pred CCCCCC-------------CEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 033121 54 QKTQVK-------------NLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 54 ~~tp~~-------------~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~ 94 (126)
++.|++ +|||||++|+..|++|||||+.||+|||++|++..
T Consensus 482 La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 482 MAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred HhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 555553 79999999999999999999999999999999864
No 10
>PLN03000 amine oxidase
Probab=99.45 E-value=1.6e-13 Score=122.53 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCC--CCCCCeeEEEEEEeCC-----ccccC-CCCCC-CCCCCCCCCC--CCEEEccccccC
Q 033121 2 PLPNDEIIRRVAKQVLALFPS--SQGLEVIWSSVVKIGQ-----SLYHE-GPGKD-PFRPDQKTQV--KNLFLAGSYTKQ 70 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~--~~~~~~~~~~v~r~~~-----a~~~~-~pG~~-~~rp~~~tp~--~~L~lAGd~t~~ 70 (126)
.++++++++.++++|+++|+. .....++.+.+++|.. |.|++ .||.. ..+...+.|+ ++|||||++|+.
T Consensus 520 ~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~ 599 (881)
T PLN03000 520 TMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTR 599 (881)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhC
Confidence 478999999999999999962 1114678899999974 55665 56643 2445556675 589999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhHHHH
Q 033121 71 DYIDIMEGASLSGRQASAYICNAREELVAL 100 (126)
Q Consensus 71 ~~patmeGAv~SG~~AA~~Il~~~~~~~~~ 100 (126)
.||+|||||+.||+|||++|++.+......
T Consensus 600 ~~~GTVhGAieSGlRAA~eIl~~l~~~~~~ 629 (881)
T PLN03000 600 RYPATMHGAFVTGLREAANMAQSAKARGIR 629 (881)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 999999999999999999999998775544
No 11
>PLN02976 amine oxidase
Probab=99.45 E-value=2e-13 Score=126.39 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCC-----ccccC-CCCCCC-CCCCCCCCCCC-EEEccccccCCCC
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQ-----SLYHE-GPGKDP-FRPDQKTQVKN-LFLAGSYTKQDYI 73 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~-----a~~~~-~pG~~~-~rp~~~tp~~~-L~lAGd~t~~~~p 73 (126)
.++++++++.++.+|+++||......++.+.+++|.. |.|++ .||... .+..+..|++| |||||++|+..||
T Consensus 1086 sLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~p 1165 (1713)
T PLN02976 1086 SMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHP 1165 (1713)
T ss_pred hCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCc
Confidence 4689999999999999999854325788999999963 55665 577432 44556778866 9999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhh
Q 033121 74 DIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 74 atmeGAv~SG~~AA~~Il~~~~~ 96 (126)
+|||||+.||+|||++|+..+..
T Consensus 1166 GTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1166 DTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred chHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999987643
No 12
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.41 E-value=1.5e-13 Score=108.29 Aligned_cols=90 Identities=32% Similarity=0.543 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCC-----ccccC-CCCCC-CCCCCCCCCC-CCEEEccccccCCCC
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQ-----SLYHE-GPGKD-PFRPDQKTQV-KNLFLAGSYTKQDYI 73 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~-----a~~~~-~pG~~-~~rp~~~tp~-~~L~lAGd~t~~~~p 73 (126)
.++++++++.++++|.++||......+..+.+++|.. +.|.+ .+|.. ..++..++|+ +||||||||++..|+
T Consensus 353 ~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~ 432 (450)
T PF01593_consen 353 DLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP 432 (450)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST
T ss_pred ccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCC
Confidence 4789999999999999999852224566788899975 33333 33322 2456778888 599999999999999
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 033121 74 DIMEGASLSGRQASAYIC 91 (126)
Q Consensus 74 atmeGAv~SG~~AA~~Il 91 (126)
++|+||+.||++||++|+
T Consensus 433 ~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 433 GGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhC
Confidence 999999999999999986
No 13
>PLN02529 lysine-specific histone demethylase 1
Probab=99.37 E-value=9.4e-13 Score=116.18 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCC--CCCCCeeEEEEEEeCC-----ccccC-CCCCCC-CCCCCCCCC-CCEEEccccccCC
Q 033121 2 PLPNDEIIRRVAKQVLALFPS--SQGLEVIWSSVVKIGQ-----SLYHE-GPGKDP-FRPDQKTQV-KNLFLAGSYTKQD 71 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~--~~~~~~~~~~v~r~~~-----a~~~~-~pG~~~-~rp~~~tp~-~~L~lAGd~t~~~ 71 (126)
.++++++++.++++|+++|+. .....++.+.+++|.. +.|++ .||... .......|+ ++||||||+|+..
T Consensus 496 ~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~ 575 (738)
T PLN02529 496 NTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQ 575 (738)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCC
Confidence 368899999999999999963 2123678889999974 55555 334221 122334554 7899999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhh
Q 033121 72 YIDIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 72 ~patmeGAv~SG~~AA~~Il~~~~~ 96 (126)
||+|||||+.||+|||++|++.+..
T Consensus 576 ~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 576 YPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred CCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987643
No 14
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.36 E-value=1.8e-12 Score=115.21 Aligned_cols=95 Identities=23% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCC--CCCCCeeEEEEEEeCC-----ccccC-CCCCC-CCCCCCCCCC--CCEEEccccccC
Q 033121 2 PLPNDEIIRRVAKQVLALFPS--SQGLEVIWSSVVKIGQ-----SLYHE-GPGKD-PFRPDQKTQV--KNLFLAGSYTKQ 70 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~--~~~~~~~~~~v~r~~~-----a~~~~-~pG~~-~~rp~~~tp~--~~L~lAGd~t~~ 70 (126)
.++++++++.++++|+++|+. .....++.+.+++|.. +.|++ .||.. ...+.++.|+ ++||||||+|+.
T Consensus 576 ~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~ 655 (808)
T PLN02328 576 TLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNK 655 (808)
T ss_pred cCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhC
Confidence 468899999999999999963 1124678899999974 55555 55643 2334445564 589999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhh
Q 033121 71 DYIDIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 71 ~~patmeGAv~SG~~AA~~Il~~~~~ 96 (126)
.||++||||+.||+|||++|++....
T Consensus 656 ~~~GtVhGAi~SGlRAA~eIl~~~~~ 681 (808)
T PLN02328 656 QYPATMHGAFLSGMREAANILRVARR 681 (808)
T ss_pred CCCeEhHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999987544
No 15
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.28 E-value=1.2e-11 Score=105.20 Aligned_cols=95 Identities=28% Similarity=0.377 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCC-----ccccC-CCCCCC-CCCCCCCCCCC-EEEccccccCCCC
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQ-----SLYHE-GPGKDP-FRPDQKTQVKN-LFLAGSYTKQDYI 73 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~-----a~~~~-~pG~~~-~rp~~~tp~~~-L~lAGd~t~~~~p 73 (126)
.+++++++..++..|+++|+......++.+.+++|.. +.|++ .+|... ..+.++.|+.+ +||||++|...||
T Consensus 359 ~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~ 438 (501)
T KOG0029|consen 359 TLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYP 438 (501)
T ss_pred cCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCC
Confidence 4789999999999999999943346889999999964 55555 333221 22456788887 9999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhh
Q 033121 74 DIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 74 atmeGAv~SG~~AA~~Il~~~~~ 96 (126)
+||+||+.||.++|..|++....
T Consensus 439 ~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 439 GTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred CchHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999884
No 16
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.20 E-value=7.4e-11 Score=98.77 Aligned_cols=93 Identities=22% Similarity=0.310 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCcccc------CCCC-CCCCCCCCCCCCCCEEEccccccCCCCC
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYH------EGPG-KDPFRPDQKTQVKNLFLAGSYTKQDYID 74 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~------~~pG-~~~~rp~~~tp~~~L~lAGd~t~~~~pa 74 (126)
.++++++++.++.+|.++||+.....+.....++|....++ +.|| .....|.+..|.++|||||+++++.|++
T Consensus 348 ~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~G 427 (450)
T COG1231 348 ALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGG 427 (450)
T ss_pred cCCHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccc
Confidence 57899999999999999999554334444367788643222 2666 3456677778889999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 033121 75 IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 75 tmeGAv~SG~~AA~~Il~~~ 94 (126)
+|||||+||++||.+|...+
T Consensus 428 w~eGAi~Sg~~AA~ei~~~l 447 (450)
T COG1231 428 WLEGAIRSGQRAAAEIHALL 447 (450)
T ss_pred hhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998754
No 17
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.9e-10 Score=97.37 Aligned_cols=93 Identities=41% Similarity=0.566 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCCcHHHHHH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYIDIMEGASL 81 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~patmeGAv~ 81 (126)
..+++++...+..++..++|...... .+.++.+...+.+...||...+||...||++|+++||||+...|-+|||||..
T Consensus 372 ~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~ 450 (485)
T COG3349 372 FESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATL 450 (485)
T ss_pred ccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhh
Confidence 34678899999999999998654444 77888888899888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 033121 82 SGRQASAYICNARE 95 (126)
Q Consensus 82 SG~~AA~~Il~~~~ 95 (126)
||++||+.|+....
T Consensus 451 sGl~AA~~v~~~~~ 464 (485)
T COG3349 451 SGLLAANAILDNLG 464 (485)
T ss_pred hHHHHHHHHHHhhh
Confidence 99999999997754
No 18
>PLN02576 protoporphyrinogen oxidase
Probab=99.03 E-value=2.8e-10 Score=94.94 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCC---CC--CCEEEccccccCCCCCcH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKT---QV--KNLFLAGSYTKQDYIDIM 76 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~t---p~--~~L~lAGd~t~~~~patm 76 (126)
.++++++++.++++|.++++......+..+.+++|+++.|.+.+|+....+..+. .. +|||+||||+.. .++
T Consensus 393 ~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g---~~i 469 (496)
T PLN02576 393 SASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGG---VAL 469 (496)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCC---ccH
Confidence 4689999999999999999743212566777999999988899887543322222 12 599999999974 399
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 033121 77 EGASLSGRQASAYICNARE 95 (126)
Q Consensus 77 eGAv~SG~~AA~~Il~~~~ 95 (126)
++|+.||+++|++|++.+.
T Consensus 470 ~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 470 GKCVESGYEAADLVISYLE 488 (496)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 19
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.02 E-value=4.9e-10 Score=91.55 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCC----CCCCCCCCCCEEEccccccCCCCCcHH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPF----RPDQKTQVKNLFLAGSYTKQDYIDIME 77 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~----rp~~~tp~~~L~lAGd~t~~~~patme 77 (126)
.++++++++.++++|+++|+.. ..+...++++|.++.+.+.||+... ++.... ++|||+||||+. +.+|+
T Consensus 362 ~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~---g~~i~ 435 (451)
T PRK11883 362 DATDEELVAFVLADLSKVMGIT--GDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE---GVGLP 435 (451)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC---CccHH
Confidence 4578999999999999999743 3567889999999888888885332 222222 569999999985 35899
Q ss_pred HHHHHHHHHHHHHHH
Q 033121 78 GASLSGRQASAYICN 92 (126)
Q Consensus 78 GAv~SG~~AA~~Il~ 92 (126)
+|+.||+++|+.|+.
T Consensus 436 ~av~sg~~~a~~i~~ 450 (451)
T PRK11883 436 DCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999975
No 20
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.01 E-value=7.5e-10 Score=91.75 Aligned_cols=88 Identities=11% Similarity=0.037 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCC----CCCCCCCCCCEEEccccccCCCCCcHH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPF----RPDQKTQVKNLFLAGSYTKQDYIDIME 77 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~----rp~~~tp~~~L~lAGd~t~~~~patme 77 (126)
.++++++.+.++++|+++|+.. ..++.+++++|+++.|.+.+|.... .+..+.+.+||||||++... ..|+
T Consensus 370 ~~~dee~~~~~~~~L~~~lG~~--~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~ 444 (463)
T PRK12416 370 NYSEEELVRVALYDIEKSLGIK--GEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIG 444 (463)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHH
Confidence 4689999999999999999754 4788899999999877777774221 12233445799999999764 3799
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033121 78 GASLSGRQASAYICNAR 94 (126)
Q Consensus 78 GAv~SG~~AA~~Il~~~ 94 (126)
+||.||+++|++|++.+
T Consensus 445 ~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 445 ACIGNGKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 21
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.96 E-value=1.5e-09 Score=89.48 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCC----CCCCCCCEEEccccccCCCCCcHH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPD----QKTQVKNLFLAGSYTKQDYIDIME 77 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~----~~tp~~~L~lAGd~t~~~~patme 77 (126)
.++++++++.++++|.++|+.. ..+.++.+++|+++.|.+.+|+....+. ...+.+|||+||||... ..||
T Consensus 369 ~~~~ee~~~~v~~~L~~~~gi~--~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g---~~i~ 443 (462)
T TIGR00562 369 DLSENEIINIVLRDLKKVLNIN--NEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG---VGIP 443 (462)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC---CcHH
Confidence 4789999999999999999743 3488899999999999999986433332 22334699999999752 3999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033121 78 GASLSGRQASAYICNAR 94 (126)
Q Consensus 78 GAv~SG~~AA~~Il~~~ 94 (126)
+|+.||+++|+.|++.+
T Consensus 444 ~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 444 DCIDQGKAAASDVLTFL 460 (462)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 22
>PRK07208 hypothetical protein; Provisional
Probab=98.77 E-value=7.6e-09 Score=85.99 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCC---CCCCCCCEEEccccccCCCCCcHHH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPD---QKTQVKNLFLAGSYTKQDYIDIMEG 78 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~---~~tp~~~L~lAGd~t~~~~patmeG 78 (126)
.++|+++++.++++|.++++ .....++.+++.+|+++.|.+.+|+....+. ..++.+|||+||++....| .+|++
T Consensus 368 ~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d~ 445 (479)
T PRK07208 368 NMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQDH 445 (479)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-CChhH
Confidence 46899999999999999854 2235788999999999988888886543332 2356689999998876545 59999
Q ss_pred HHHHHHHHHHHHHHH
Q 033121 79 ASLSGRQASAYICNA 93 (126)
Q Consensus 79 Av~SG~~AA~~Il~~ 93 (126)
|+.||.++|+.|.+.
T Consensus 446 a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 446 SMLTAMLAVENIIAG 460 (479)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988776
No 23
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.73 E-value=3.6e-08 Score=83.27 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeC-----CccccC-CCCCCCC------CCC---CCCCCCCEEEccc
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIG-----QSLYHE-GPGKDPF------RPD---QKTQVKNLFLAGS 66 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~-----~a~~~~-~pG~~~~------rp~---~~tp~~~L~lAGd 66 (126)
.++||++++.+..-|++++++..-.+|....-+.|. +|.|++ .+|.... .|. ..++-+.|.|||+
T Consensus 384 ~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGE 463 (498)
T KOG0685|consen 384 TLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGE 463 (498)
T ss_pred hCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccc
Confidence 479999999999999999975544677777777885 577887 5553211 122 2223357999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 67 YTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 67 ~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
+|+..|-.|.+||++||+|.|+.+++...
T Consensus 464 aThr~~YsTthGA~~SG~REA~RL~~~y~ 492 (498)
T KOG0685|consen 464 ATHRTFYSTTHGAVLSGWREADRLLEHYE 492 (498)
T ss_pred cccccceehhhhhHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999998543
No 24
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.34 E-value=3.3e-06 Score=71.02 Aligned_cols=84 Identities=14% Similarity=0.265 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeeEEEEE---EeC------CccccCCCCC--C-CCC-CCCCCCCCCEEEccccccCCC
Q 033121 6 DEIIRRVAKQVLALFPSSQGLEVIWSSVV---KIG------QSLYHEGPGK--D-PFR-PDQKTQVKNLFLAGSYTKQDY 72 (126)
Q Consensus 6 eel~~~vl~~L~~~fp~~~~~~~~~~~v~---r~~------~a~~~~~pG~--~-~~r-p~~~tp~~~L~lAGd~t~~~~ 72 (126)
+++.+++++.|.++||+.. ..++...+. .+. .+.|...+.. . ..+ |..++|++||||||+++ +
T Consensus 394 ~~~~~~il~~l~~~~p~l~-~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~---~ 469 (493)
T TIGR02730 394 EADAERIIDRLEKIFPGLD-SAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSC---F 469 (493)
T ss_pred HHHHHHHHHHHHHHCCChh-hcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcC---C
Confidence 4588889999999999874 455543322 111 1222111110 0 112 45689999999999998 5
Q ss_pred CC-cHHHHHHHHHHHHHHHHHH
Q 033121 73 ID-IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 73 pa-tmeGAv~SG~~AA~~Il~~ 93 (126)
|| .+.||+.||+.||+.|+++
T Consensus 470 pG~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 470 PGQGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 66 9999999999999999875
No 25
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.21 E-value=9.4e-06 Score=68.01 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeeEEEEE---EeC------Cc-cccCCC--CCC-CCCCCCCCCCCCEEEccccccCCC
Q 033121 6 DEIIRRVAKQVLALFPSSQGLEVIWSSVV---KIG------QS-LYHEGP--GKD-PFRPDQKTQVKNLFLAGSYTKQDY 72 (126)
Q Consensus 6 eel~~~vl~~L~~~fp~~~~~~~~~~~v~---r~~------~a-~~~~~p--G~~-~~rp~~~tp~~~L~lAGd~t~~~~ 72 (126)
+++.+++++.|.+.+|+.. ..++...+. .|. .| .|.... ... ..++..++|++||||||+++ +
T Consensus 394 ~~~~~~il~~le~~~p~l~-~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~---~ 469 (492)
T TIGR02733 394 KQYTQTIIERLGHYFDLLE-ENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSI---H 469 (492)
T ss_pred HHHHHHHHHHHHHHCCCcc-ccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCcc---C
Confidence 4577889999999999774 455543321 111 11 111111 111 12344588999999999988 5
Q ss_pred CC-cHHHHHHHHHHHHHHHHHH
Q 033121 73 ID-IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 73 pa-tmeGAv~SG~~AA~~Il~~ 93 (126)
|| .+-|++.||+.||+.|++.
T Consensus 470 pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 470 PGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CCCcHHHHHHHHHHHHHHHhhc
Confidence 76 8999999999999999853
No 26
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.16 E-value=3.1e-06 Score=67.90 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCCcHHHHH
Q 033121 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYIDIMEGAS 80 (126)
Q Consensus 1 ~~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~patmeGAv 80 (126)
+.+++|+.+..+......+++.. ...+.+.+.++|+++.|...-+. .+....+-.+||+||||.+. +-+|||+
T Consensus 245 ~~~~~e~~i~~l~aA~~~~~~~~-~~~p~~s~~H~WrYA~P~~~~~~---~~L~ad~~~~l~~cGDwc~G---grVEgA~ 317 (331)
T COG3380 245 LDHPAEQVIVALRAAAQELDGDR-LPEPDWSDAHRWRYAIPNDAVAG---PPLDADRELPLYACGDWCAG---GRVEGAV 317 (331)
T ss_pred hcCCHHHHHHHHHHhhhhccCCC-CCcchHHHhhccccccccccccC---CccccCCCCceeeecccccC---cchhHHH
Confidence 35677777777777777777632 25778888999999766553322 11111222579999999986 7899999
Q ss_pred HHHHHHHHHHHHH
Q 033121 81 LSGRQASAYICNA 93 (126)
Q Consensus 81 ~SG~~AA~~Il~~ 93 (126)
.||..+|+.|++.
T Consensus 318 LSGlAaA~~i~~~ 330 (331)
T COG3380 318 LSGLAAADHILNG 330 (331)
T ss_pred hccHHHHHHHHhc
Confidence 9999999999875
No 27
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.15 E-value=1.2e-05 Score=67.35 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHh-CCCCCCCCeeEEEEE------E---eCC-ccccCCCC---CCCCCCC-CCCCCCCEEEccccccC
Q 033121 6 DEIIRRVAKQVLAL-FPSSQGLEVIWSSVV------K---IGQ-SLYHEGPG---KDPFRPD-QKTQVKNLFLAGSYTKQ 70 (126)
Q Consensus 6 eel~~~vl~~L~~~-fp~~~~~~~~~~~v~------r---~~~-a~~~~~pG---~~~~rp~-~~tp~~~L~lAGd~t~~ 70 (126)
+++.+++++.|++. +|+.. ..++...+. + ... +.|...+. ....+|. .++|++|||+||++|
T Consensus 392 ~~~~~~il~~l~~~~~p~l~-~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~-- 468 (502)
T TIGR02734 392 PRYRDRILAYLEERAIPGLR-DRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGT-- 468 (502)
T ss_pred HHHHHHHHHHHHHhcCCChh-HheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCC--
Confidence 45788999999998 88874 445443322 0 011 11222111 1124553 468899999999998
Q ss_pred CCCC-cHHHHHHHHHHHHHHHHHHH
Q 033121 71 DYID-IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 71 ~~pa-tmeGAv~SG~~AA~~Il~~~ 94 (126)
+|| .+-||+.||+.||+.|++..
T Consensus 469 -~pG~Gv~g~~~sg~~~a~~il~~~ 492 (502)
T TIGR02734 469 -HPGAGVPGVLGSAKATAKLMLGDL 492 (502)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHhhc
Confidence 576 99999999999999999763
No 28
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.95 E-value=6e-06 Score=69.72 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCC----CCCEEEccccccCCCCC-cH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQ----VKNLFLAGSYTKQDYID-IM 76 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp----~~~L~lAGd~t~~~~pa-tm 76 (126)
.++|||+++.++++|.++++.. ..+++++++||+++.|.|.+|+...+...+.. .++|+++|-|- .+ ++
T Consensus 355 ~~~dee~~~~~l~~L~~~~~~~--~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~----~g~g~ 428 (444)
T COG1232 355 TMSDEELVAAVLDDLKKLGGIN--GDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYG----EGVGL 428 (444)
T ss_pred ccCHHHHHHHHHHHHHHHcCcC--cchhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCC----CCCCc
Confidence 4679999999999999999865 34558999999999999999975543332222 25888888544 34 88
Q ss_pred HHHHHHHHHHHHHHH
Q 033121 77 EGASLSGRQASAYIC 91 (126)
Q Consensus 77 eGAv~SG~~AA~~Il 91 (126)
.++|.+|..||++++
T Consensus 429 ~d~I~~g~~aa~~l~ 443 (444)
T COG1232 429 PDCIAAGKEAAEQLL 443 (444)
T ss_pred hHHHHHHHHHHHHhh
Confidence 999999999998875
No 29
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.48 E-value=0.0091 Score=51.17 Aligned_cols=86 Identities=24% Similarity=0.213 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeeEEEEE---------EeCCccccCC-CCCC---CCCCCC-----CCCCCCEEEccc
Q 033121 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSVV---------KIGQSLYHEG-PGKD---PFRPDQ-----KTQVKNLFLAGS 66 (126)
Q Consensus 5 deel~~~vl~~L~~~fp~~~~~~~~~~~v~---------r~~~a~~~~~-pG~~---~~rp~~-----~tp~~~L~lAGd 66 (126)
.++.++++++.+.++||.+. ..++.+.+- ..+++.+-.. -+.. -.+|.. ++|+++||+|||
T Consensus 444 K~~~ae~~~~~ie~l~Pgfs-ssv~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs 522 (561)
T KOG4254|consen 444 KEAFAERVFSVIEKLAPGFS-SSVESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGS 522 (561)
T ss_pred HHHHHHHHHHHHHHHcCCcc-ceEEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecC
Confidence 36688899999999999986 455443321 1122332221 1211 124544 899999999997
Q ss_pred cccCCCCC-cHHHHHHHHHHHHHHHHHHHhh
Q 033121 67 YTKQDYID-IMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 67 ~t~~~~pa-tmeGAv~SG~~AA~~Il~~~~~ 96 (126)
-+ +|+ .+-+|- |+.+|...+..+..
T Consensus 523 ~a---fPGgGV~a~a--G~~~A~~a~~~~~~ 548 (561)
T KOG4254|consen 523 GA---FPGGGVMAAA--GRLAAHSAILDRKL 548 (561)
T ss_pred CC---CCCCCccccc--hhHHHHHHhhhhhh
Confidence 76 567 444444 99999877766554
No 30
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.18 E-value=0.0038 Score=52.96 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCC----C-CCCCCCEEEccccccCCCCCcH
Q 033121 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPD----Q-KTQVKNLFLAGSYTKQDYIDIM 76 (126)
Q Consensus 2 ~~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~----~-~tp~~~L~lAGd~t~~~~patm 76 (126)
..|.+|+++.+.+.|.++++.- .++....++-|+++.|-|..|+...... . ..+-.+||+||.|... -++
T Consensus 401 ~~S~ee~~~~v~~alq~~Lgi~--~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~G---v~v 475 (491)
T KOG1276|consen 401 VPSPEELVNAVTSALQKMLGIS--NKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGG---VSV 475 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCC---CCh
Confidence 4588999999999999999654 3577777889999888888886432211 1 1222489999977642 289
Q ss_pred HHHHHHHHHHHHHHH
Q 033121 77 EGASLSGRQASAYIC 91 (126)
Q Consensus 77 eGAv~SG~~AA~~Il 91 (126)
...|.||+++|.+++
T Consensus 476 gdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 476 GDCIESGRKTAVEVI 490 (491)
T ss_pred hHHHHhhHHHHHhhc
Confidence 999999999998764
No 31
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=93.76 E-value=0.085 Score=41.28 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=31.8
Q ss_pred CCCEEEccccccCCCCC-----cHHHHHHHHHHHHHHHHHHHh
Q 033121 58 VKNLFLAGSYTKQDYID-----IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 58 ~~~L~lAGd~t~~~~pa-----tmeGAv~SG~~AA~~Il~~~~ 95 (126)
+++||+||..+...+.+ +.-|=+.||++||+.|++++.
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 58999999999776644 667777799999999999875
No 32
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=93.72 E-value=0.083 Score=41.36 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCCEEEccccccCCCCC-----cHHHHHHHHHHHHHHHHHHH
Q 033121 58 VKNLFLAGSYTKQDYID-----IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 58 ~~~L~lAGd~t~~~~pa-----tmeGAv~SG~~AA~~Il~~~ 94 (126)
+++||+||..+...+.. +.-|=+.||++||+.|++.+
T Consensus 212 ~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 212 VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 58999999999766644 66677779999999999875
No 33
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.37 E-value=0.39 Score=40.80 Aligned_cols=39 Identities=31% Similarity=0.421 Sum_probs=26.6
Q ss_pred CCCCC-CCCCCCEEEccccccCCCCC-cHHHHHHHHHHHHHHHH
Q 033121 50 FRPDQ-KTQVKNLFLAGSYTKQDYID-IMEGASLSGRQASAYIC 91 (126)
Q Consensus 50 ~rp~~-~tp~~~L~lAGd~t~~~~pa-tmeGAv~SG~~AA~~Il 91 (126)
.||.. +||++|||+||+.|+ || .+.|+..|+...+..+.
T Consensus 440 ~rp~~~~t~i~~LYl~Ga~t~---PG~Gv~g~~g~~~a~~~~~~ 480 (487)
T COG1233 440 FRPPPKSTPIKGLYLVGASTH---PGGGVPGVPGSAAAVALLID 480 (487)
T ss_pred CCCCCCCCCcCceEEeCCcCC---CCCCcchhhhhHHHHHhhhc
Confidence 34433 689999999999884 56 66666666555544443
No 34
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.80 E-value=0.15 Score=39.09 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=31.6
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNA 93 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~ 93 (126)
.++..+|||.+||-+.. .+..+.-|+..|+.||..|.+.
T Consensus 261 ~~t~~~~vya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 261 MRTSVPGVFAAGDVRDK-GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CccCCCCEEEeecccCc-chhhhhhhhhhHHHHHHHHHhh
Confidence 45667899999998853 3457889999999999988754
No 35
>PRK12831 putative oxidoreductase; Provisional
Probab=92.53 E-value=0.22 Score=41.99 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=33.8
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
.+|.+++||.+||-+.. |.++..|+..|+.||..|.+.+.
T Consensus 422 ~~Ts~pgVfAaGD~~~g--~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 422 GLTSKEGVFAGGDAVTG--AATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CccCCCCEEEeCCCCCC--chHHHHHHHHHHHHHHHHHHHhc
Confidence 56778999999998753 56889999999999999987753
No 36
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.28 E-value=0.24 Score=43.44 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=33.7
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
.+|.+++||.+||-+. .+.++.-|+..|+.||..|.+.+.
T Consensus 613 ~~Ts~~gVfAaGD~~~--g~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 613 YQTSNPKIFAGGDAVR--GADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cccCCCCEEEcCCcCC--CCcHHHHHHHHHHHHHHHHHHHhC
Confidence 4677899999999874 356889999999999999988754
No 37
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.27 E-value=0.21 Score=43.75 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=34.6
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHhhH
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAREEL 97 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~~~ 97 (126)
.+|.+++||.+||-+.. +.++--|+..|++||..|.+.+...
T Consensus 596 ~~Ts~~gVfA~GD~~~g--~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHG--ADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred cccCCCCEEEcCCCCCC--chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45777899999998743 5678999999999999999887543
No 38
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.19 E-value=0.24 Score=41.54 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNA 93 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~ 93 (126)
.+|.+++||.+||-+. -|.++.-|+..|+.||..|.+.
T Consensus 411 ~~Ts~~~VfA~GD~~~--g~~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 411 QRTSIPGVFAGGDIIL--GAATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CccCCCCEEEecCCCC--CcHHHHHHHHHHHHHHHHHHhh
Confidence 4677889999999984 2558889999999999998764
No 39
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=92.04 E-value=0.33 Score=40.88 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
..+|.+++||.+||-+.. +.++..|+..|+.||..|.+.+.
T Consensus 425 ~~~Ts~~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 425 AYQTSNPKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred cccCCCCCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999862 34788999999999999988764
No 40
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=91.41 E-value=0.25 Score=41.04 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=30.8
Q ss_pred CCCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHH
Q 033121 58 VKNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 58 ~~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~ 94 (126)
++||||||+-++-+-+. .++-|+.||..|+..+-..+
T Consensus 336 ~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 336 RPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred CCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999766553 89999999999998876543
No 41
>PLN02661 Putative thiazole synthesis
Probab=91.36 E-value=0.25 Score=40.94 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=32.5
Q ss_pred CCCEEEccccccCCCCC-----cHHHHHHHHHHHHHHHHHHHhh
Q 033121 58 VKNLFLAGSYTKQDYID-----IMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 58 ~~~L~lAGd~t~~~~pa-----tmeGAv~SG~~AA~~Il~~~~~ 96 (126)
+++||+||..+...+-+ +.-|=+.||++||+.|++.+..
T Consensus 286 ~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 286 VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 58999999999765533 6677778999999999999874
No 42
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.69 E-value=0.43 Score=41.07 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=34.1
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
..|.++|||.+||-+. .|.++-.|+..|++||..|.+.+.
T Consensus 405 ~~ts~~~Vfa~GD~~~--g~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 405 MMTGRPGVFAGGDMVP--GPRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred ccCCCCCEEeccCcCC--CchHHHHHHHHHHHHHHHHHHHHc
Confidence 4566789999999874 367899999999999999988875
No 43
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=90.66 E-value=0.24 Score=39.15 Aligned_cols=38 Identities=26% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCEEEccccccCCCCC-----cHHHHHHHHHHHHHHHHHHHh
Q 033121 58 VKNLFLAGSYTKQDYID-----IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 58 ~~~L~lAGd~t~~~~pa-----tmeGAv~SG~~AA~~Il~~~~ 95 (126)
.+|||+||..+...|-+ +.-|=+.||++||+.|++.+.
T Consensus 218 ~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 218 YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 58999999999766533 667777899999999998864
No 44
>PRK10262 thioredoxin reductase; Provisional
Probab=90.52 E-value=0.13 Score=40.69 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=34.3
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHhhHH
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAREELV 98 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~~~~ 98 (126)
.+|.+++||.|||-+...+ ..+-.|+..|..||..|.+.+..++
T Consensus 275 ~~t~~~~VyA~GD~~~~~~-~~~~~A~~~g~~Aa~~~~~~l~~~~ 318 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHIY-RQAITSAGTGCMAALDAERYLDGLA 318 (321)
T ss_pred cccCCCCEEECeeccCCCc-ceEEEEehhHHHHHHHHHHHHHhcc
Confidence 5778899999999986433 3333499999999999998876654
No 45
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.52 E-value=0.57 Score=39.54 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=32.5
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
.+|.+++||.+||-+.. +.++..|+..|+.||..|.+.++
T Consensus 427 ~~T~~~gVfa~GD~~~~--~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 427 YQTTNPKIFAGGDAVRG--ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred ccCCCCCEEEECCcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 45667899999998753 45778999999999999987653
No 46
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=90.23 E-value=0.45 Score=39.56 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=32.2
Q ss_pred CCEEEccccccCCCC-----CcHHHHHHHHHHHHHHHHHHHhh
Q 033121 59 KNLFLAGSYTKQDYI-----DIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 59 ~~L~lAGd~t~~~~p-----atmeGAv~SG~~AA~~Il~~~~~ 96 (126)
+|++++||.-...-| ..|.-|+.||+.||+.|.+.+..
T Consensus 295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~ 337 (428)
T PRK10157 295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKS 337 (428)
T ss_pred CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhc
Confidence 699999999976544 38899999999999999887653
No 47
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=90.00 E-value=0.7 Score=37.19 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=32.6
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
.++..++||.+||-+. .|..+..|+..|+.||..|.+.+.
T Consensus 311 ~~t~~~~vyaiGD~~~--~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 311 HMTSREGVFAAGDVVT--GPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred cccCCCCEEEEccccc--CcchHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999874 366889999999999999987753
No 48
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=89.95 E-value=0.57 Score=43.49 Aligned_cols=41 Identities=22% Similarity=0.140 Sum_probs=34.8
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~~ 96 (126)
.+|++++||.+||-+. .|.++-.|+..|++||..|.+.+..
T Consensus 716 ~~Ts~pgVFAaGDv~~--G~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVT--GGATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcCC--CccHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999884 3568899999999999999988653
No 49
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=89.93 E-value=0.56 Score=39.80 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=33.0
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
.+|.+++||.|||-+. .+.+..-|+..|+.||..|.+.+.
T Consensus 440 ~~Ts~~gVfAaGD~~~--g~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRR--GQSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred ceECCCCEEEeeccCC--CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677889999999874 345778899999999999988764
No 50
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=89.82 E-value=0.59 Score=41.71 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=33.4
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
.+|.+++||.+||-+.. |.++.-|+..|++||..|.+.+.
T Consensus 711 ~~Ts~~gVfA~GD~~~g--~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 711 MQSSIPGIYAGGDIVRG--GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCCCEEEeCCccCC--cHHHHHHHHHHHHHHHHHHHHhc
Confidence 35777899999998853 56889999999999999988753
No 51
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.74 E-value=0.66 Score=38.76 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=32.9
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
.+|.+++||.+||-+.. +.++.-|+..|+.||..|.+.+.
T Consensus 413 ~~Ts~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 413 GRTSLPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CccCCCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHHh
Confidence 56677899999998842 45788899999999999988764
No 52
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=89.39 E-value=0.59 Score=40.45 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=30.3
Q ss_pred CCCCCEEEccccccCCCCC-------cHHHHHHHHHHHHHHHHHH
Q 033121 56 TQVKNLFLAGSYTKQDYID-------IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 56 tp~~~L~lAGd~t~~~~pa-------tmeGAv~SG~~AA~~Il~~ 93 (126)
++++|||-||+.+.....+ ++-+|+.+|++|++.+.+.
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~ 395 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEY 395 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 6899999999987543333 6788999999999987654
No 53
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.35 E-value=0.65 Score=40.51 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=31.0
Q ss_pred CCCCCCEEEccccccCCCCC-------cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTKQDYID-------IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~~pa-------tmeGAv~SG~~AA~~Il~~ 93 (126)
.++++|||-||+.+.+...+ ++-.|+..|++|++.+.+.
T Consensus 382 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 427 (598)
T PRK09078 382 DAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEV 427 (598)
T ss_pred CCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 36899999999987643333 7888999999999987664
No 54
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.11 E-value=0.75 Score=40.55 Aligned_cols=41 Identities=24% Similarity=0.207 Sum_probs=34.4
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~~ 96 (126)
.+|..++||.+||-+. .|.+...|+..|+.||..|.+.+..
T Consensus 462 ~~Ts~pgVfA~GDv~~--g~~~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 462 LQTSVAGVFAGGDCVT--GADIAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CcCCCCCEEEcCCcCC--CchHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567789999999874 3668889999999999999888753
No 55
>PRK13984 putative oxidoreductase; Provisional
Probab=88.99 E-value=0.77 Score=39.78 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=31.4
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
.+|++++||.+||-+.. + .+-.|+..|+.||..|.+.+.
T Consensus 564 ~~Ts~~gVfAaGD~~~~--~-~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHG--P-DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CccCCCCEEEecCcCCc--h-HHHHHHHHHHHHHHHHHHHhc
Confidence 56778999999999853 3 345689999999999988753
No 56
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=88.83 E-value=0.62 Score=43.01 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=34.6
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~~ 96 (126)
.+|.+++||.+||-+.. +.++--|+..|++||..|.+.+.-
T Consensus 588 ~~Ts~pgVFAaGD~~~G--~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 588 QRTSIKGVYSGGDAARG--GSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred CccCCCCEEEEEcCCCC--hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46778899999999853 448899999999999999887765
No 57
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.65 E-value=0.85 Score=39.51 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=32.2
Q ss_pred CCCC-CCCEEEccccccCCCCC-------cHHHHHHHHHHHHHHHHHHH
Q 033121 54 QKTQ-VKNLFLAGSYTKQDYID-------IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 54 ~~tp-~~~L~lAGd~t~~~~pa-------tmeGAv~SG~~AA~~Il~~~ 94 (126)
.+++ ++|||-||+...+.+.+ ++-+++..|++|++.+.+..
T Consensus 355 ~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 403 (566)
T PRK06452 355 GRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFL 403 (566)
T ss_pred CCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4566 99999999987644433 78889999999999886653
No 58
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=88.38 E-value=0.81 Score=38.68 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEccccccCC-----CCC--cHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQD-----YID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~-----~pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
..+++++|||-||+.+... |.+ ++-.|+.+|++|++.+.+.
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 4568899999999986432 333 6788999999999988754
No 59
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.21 E-value=0.8 Score=39.76 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=30.9
Q ss_pred CCCCCCEEEccccccCCCCC-------cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTKQDYID-------IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~~pa-------tmeGAv~SG~~AA~~Il~~ 93 (126)
.++++|||-||+.+...+.+ ++-.|+..|++|++.+.+.
T Consensus 372 ~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 417 (583)
T PRK08205 372 TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEY 417 (583)
T ss_pred CCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHH
Confidence 36799999999987644333 7888999999999887654
No 60
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.83 E-value=0.96 Score=38.80 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=31.8
Q ss_pred CCCCCCCCEEEccccccCC----CCC--cHHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQD----YID--IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~----~pa--tmeGAv~SG~~AA~~Il~~~ 94 (126)
..+|+++|||-||+.+... |.+ ++-.|+.+|+.|++.+.+..
T Consensus 356 ~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 356 DCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred CCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 3458999999999976432 222 67789999999999887653
No 61
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=87.77 E-value=0.88 Score=40.16 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCCCCEEEccccccCCCCC-------cHHHHHHHHHHHHHHHHHH
Q 033121 56 TQVKNLFLAGSYTKQDYID-------IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 56 tp~~~L~lAGd~t~~~~pa-------tmeGAv~SG~~AA~~Il~~ 93 (126)
++++|||-||+-+.....+ ++-.|+..|++|++.+.+.
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~ 465 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEI 465 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 6899999999987543333 7888999999999987654
No 62
>PRK06175 L-aspartate oxidase; Provisional
Probab=87.46 E-value=1.2 Score=37.16 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=31.6
Q ss_pred CCCCCCCCEEEccccccCC-----CCC--cHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQD-----YID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~-----~pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
..+++++|||-||+-+... |.+ ++-.++..|++|++.+...
T Consensus 339 ~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~ 386 (433)
T PRK06175 339 NSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred CccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 4458999999999987532 333 6788899999999988543
No 63
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=87.34 E-value=0.39 Score=44.73 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=33.9
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~~ 96 (126)
.+|..+|||.+||-+. .|.++..|+..|+.||..|+.....
T Consensus 801 ~~Ts~pgVFAaGD~a~--GP~tVv~AIaqGr~AA~nIl~~~~~ 841 (1012)
T TIGR03315 801 GETNITNVFVIGDANR--GPATIVEAIADGRKAANAILSREGL 841 (1012)
T ss_pred CccCCCCEEEEeCcCC--CccHHHHHHHHHHHHHHHHhccccC
Confidence 4567789999999864 4789999999999999999865443
No 64
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=87.08 E-value=1.1 Score=38.98 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=31.8
Q ss_pred CCCCCCCCEEEccccccCCC-----CC--cHHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDY-----ID--IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~-----pa--tmeGAv~SG~~AA~~Il~~~ 94 (126)
..+|+++|||-|||-+...+ .+ ++-.|+.+|++|++.+....
T Consensus 366 ~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 366 NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred CCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 34688999999999765332 22 67889999999999876643
No 65
>PRK09077 L-aspartate oxidase; Provisional
Probab=86.99 E-value=1 Score=38.67 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=32.1
Q ss_pred CCCCCCCCEEEccccccCCCC-----C--cHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYI-----D--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~p-----a--tmeGAv~SG~~AA~~Il~~ 93 (126)
..+|+++|||-||+.+..... + ++-.|+..|++|++.+...
T Consensus 361 ~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 361 HGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred CCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 346889999999998753333 2 7888999999999988764
No 66
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=86.92 E-value=0.81 Score=38.12 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCCCCEEEccccccC-----CCCC--cHHHHHHHHHHHHHHHHHHHh
Q 033121 56 TQVKNLFLAGSYTKQ-----DYID--IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 56 tp~~~L~lAGd~t~~-----~~pa--tmeGAv~SG~~AA~~Il~~~~ 95 (126)
+|++|||-||+-+.. .|++ ++-.|+.+|+.|++.+.....
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 489999999987543 4554 677889999999998876543
No 67
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=86.49 E-value=1.1 Score=39.43 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=30.4
Q ss_pred CCCCCCEEEccccccCCC-----CC--cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTKQDY-----ID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~~-----pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
.++++|||-||+.+.... .+ ++-.++..|++|++.+.+.
T Consensus 399 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~ 444 (617)
T PTZ00139 399 DKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEI 444 (617)
T ss_pred CCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 457999999999875332 22 7888999999999988664
No 68
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=86.26 E-value=1.2 Score=38.36 Aligned_cols=39 Identities=26% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCCCCEEEccccccCCCC-----C--cHHHHHHHHHHHHHHHHHHH
Q 033121 56 TQVKNLFLAGSYTKQDYI-----D--IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 56 tp~~~L~lAGd~t~~~~p-----a--tmeGAv~SG~~AA~~Il~~~ 94 (126)
|+++|||-||+-+..... + ++-+|+.+|++|++.+.+..
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 889999999997753222 2 68889999999999886643
No 69
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=86.26 E-value=1.1 Score=41.90 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=34.1
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
.+|..++||.+||-+. .|.++..|+..|+.||+.|+....
T Consensus 803 lqTs~pgVFAaGD~a~--Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 803 GETSLTNVYMIGDVQR--GPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred cccCCCCEEEEecccc--CchHHHHHHHHHHHHHHHHhhhcC
Confidence 4667789999999873 478999999999999999987655
No 70
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=85.86 E-value=1.2 Score=38.79 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=31.7
Q ss_pred CCCCCCCCEEEccccccCCCC-----C--cHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYI-----D--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~p-----a--tmeGAv~SG~~AA~~Il~~ 93 (126)
..+|+++|||-|||....... + ++-+|+..|++|++.+...
T Consensus 365 ~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 365 NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 456889999999998654322 2 7788999999999987654
No 71
>PRK08071 L-aspartate oxidase; Provisional
Probab=85.70 E-value=1.3 Score=37.74 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=31.4
Q ss_pred CCCCCCCCEEEccccccCCC-----CC--cHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDY-----ID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~-----pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
..+|+++|||-||+.+.+.. .+ ++-.++..|++|++.+...
T Consensus 340 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 340 DGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred CCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 34688999999999875322 22 7788899999999988654
No 72
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=85.63 E-value=0.78 Score=38.46 Aligned_cols=32 Identities=28% Similarity=0.168 Sum_probs=25.7
Q ss_pred CCCCEEEccccccCCCCC---cHHHHHHHHHHHHH
Q 033121 57 QVKNLFLAGSYTKQDYID---IMEGASLSGRQASA 88 (126)
Q Consensus 57 p~~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~ 88 (126)
.++||||||+-++-+-+. .++-|+.||..|++
T Consensus 374 ~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 374 LVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 468999999999766653 79999999999985
No 73
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.61 E-value=1.5 Score=38.24 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=30.4
Q ss_pred CCCCCCCEEEccccccC----CCCC--cHHHHHHHHHHHHHHHHHH
Q 033121 54 QKTQVKNLFLAGSYTKQ----DYID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~----~~pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
.+|+++|||-||+.... ++.+ ++-.|+..|++|++.+.+.
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~ 409 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEY 409 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 57889999999997632 2222 6788999999999887654
No 74
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.58 E-value=1.3 Score=38.39 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCCCCCEEEccccccCCCC-----C--cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTKQDYI-----D--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~~p-----a--tmeGAv~SG~~AA~~Il~~ 93 (126)
.++++|||-||+-+..... + ++-.|+.+|++|++.+...
T Consensus 367 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~ 412 (575)
T PRK05945 367 DGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEY 412 (575)
T ss_pred CCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 3578999999998764322 2 6888999999999987654
No 75
>PRK10015 oxidoreductase; Provisional
Probab=85.42 E-value=1.3 Score=36.85 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=31.4
Q ss_pred CCEEEccccccCCCC-----CcHHHHHHHHHHHHHHHHHHHh
Q 033121 59 KNLFLAGSYTKQDYI-----DIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 59 ~~L~lAGd~t~~~~p-----atmeGAv~SG~~AA~~Il~~~~ 95 (126)
+|+.++||.-....| ..|.-|+.||+.||+.|.+.+.
T Consensus 295 ~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~ 336 (429)
T PRK10015 295 DGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKE 336 (429)
T ss_pred CCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHh
Confidence 699999999977543 3788899999999999988765
No 76
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=85.34 E-value=1.6 Score=36.58 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=30.3
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHH
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYIC 91 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il 91 (126)
.+|.+++||.+||-+.. +...+-|+..|+.||+.|+
T Consensus 291 ~~T~~p~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGK--VELTPVAIAAGRKLSERLF 326 (450)
T ss_pred CcCCCCCEEEEEecCCC--cccHHHHHHHHHHHHHHHh
Confidence 56778899999998853 4578899999999999886
No 77
>PRK06116 glutathione reductase; Validated
Probab=85.33 E-value=1.6 Score=36.26 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=30.8
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.++|||.+||-+. .+...+-|+..|+.||+.|..
T Consensus 290 ~~~Ts~~~IyA~GD~~~--~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 290 YQNTNVPGIYAVGDVTG--RVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCCcCCCCEEEEeecCC--CcCcHHHHHHHHHHHHHHHhC
Confidence 34677899999999874 345788999999999998863
No 78
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.09 E-value=1.2 Score=38.52 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=29.1
Q ss_pred CCCCCEEEccccccCCCC-----C--cHHHHHHHHHHHHHHHHHH
Q 033121 56 TQVKNLFLAGSYTKQDYI-----D--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 56 tp~~~L~lAGd~t~~~~p-----a--tmeGAv~SG~~AA~~Il~~ 93 (126)
+|++|||-||+.+..... + ++-.|+.+|++|++.+.+.
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~ 413 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEY 413 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 348999999998763322 2 6788899999999887654
No 79
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.95 E-value=1.6 Score=38.02 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=29.7
Q ss_pred CCCCCEEEccccccCC-----CCC--cHHHHHHHHHHHHHHHHHH
Q 033121 56 TQVKNLFLAGSYTKQD-----YID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 56 tp~~~L~lAGd~t~~~-----~pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
++++|||-||+-+... |.+ ++-+|+..|++|++.+.+.
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 422 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQES 422 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 6899999999987633 222 6788999999999987654
No 80
>PRK07512 L-aspartate oxidase; Provisional
Probab=84.88 E-value=1.6 Score=37.26 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=30.9
Q ss_pred CCCCCCCCEEEccccccCCCCC-------cHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYID-------IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~pa-------tmeGAv~SG~~AA~~Il~~ 93 (126)
..+|+++|||-||+.+.....+ ++-.|+..|++|++.+...
T Consensus 349 ~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 349 DGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred CCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999987433322 5777888999999988664
No 81
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=84.57 E-value=1.5 Score=36.42 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=30.9
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYIC 91 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il 91 (126)
..+|.++|||.+||-+. +|....-|+..|+.||+.|+
T Consensus 297 ~~~t~~~~IyAiGD~~~--~~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 297 NYQTAVPHIYAVGDVIG--FPSLASASMDQGRIAAQHAV 333 (461)
T ss_pred CcccCCCCEEEeeecCC--CcccHhHHHHHHHHHHHHHc
Confidence 34667899999999874 56678899999999999886
No 82
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=84.41 E-value=3.3 Score=33.91 Aligned_cols=37 Identities=24% Similarity=0.119 Sum_probs=32.4
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHHh
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~~ 95 (126)
+|+.+.||......|- .|.-|+.||..||+.|.+...
T Consensus 269 ~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~ 308 (396)
T COG0644 269 DGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALE 308 (396)
T ss_pred CCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999766653 889999999999999999865
No 83
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=84.37 E-value=1.9 Score=35.38 Aligned_cols=37 Identities=19% Similarity=0.037 Sum_probs=32.3
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHHh
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~~ 95 (126)
+|+.++||.-....|- .|.-|+.||+.||+.+.+.+.
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 6899999999888873 889999999999999987653
No 84
>PRK08401 L-aspartate oxidase; Provisional
Probab=84.32 E-value=1.8 Score=36.46 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCCCCCCEEEccccccCCC-----CC--cHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDY-----ID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~-----pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
..+|+++|||-||+-+.... .+ ++-.++..|++|++.+.+.
T Consensus 318 ~~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 318 FYRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CCcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 34688999999999875222 22 5666889999999988653
No 85
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=84.07 E-value=1.7 Score=37.61 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=31.1
Q ss_pred CCCCCCEEEcccccc----CCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK----QDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~----~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
..||+|||-||+.+. ..||+ ++-.|+.+|+.|++.+.+.
T Consensus 521 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 566 (574)
T PRK12842 521 GTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGV 566 (574)
T ss_pred CCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhh
Confidence 457899999998754 34554 7888999999999988755
No 86
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=83.98 E-value=1.4 Score=38.15 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCCCCCEEEcccccc----CCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK----QDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~----~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
..||+|||-||+.+. ..|++ ++-.|+.+|+.|++.+..
T Consensus 511 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 511 GSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 457999999998874 34653 677899999999998754
No 87
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.98 E-value=2 Score=37.25 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=29.5
Q ss_pred CCCCCEEEccccccCC-----CCC--cHHHHHHHHHHHHHHHHHH
Q 033121 56 TQVKNLFLAGSYTKQD-----YID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 56 tp~~~L~lAGd~t~~~-----~pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
++++|||-||+.+... +.+ ++-.|+.+|++|++.+.+.
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 404 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKA 404 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 5799999999987533 222 6788999999999887654
No 88
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=83.93 E-value=1.3 Score=37.50 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.9
Q ss_pred CCCCEEEcccccc-CCCCC--cHHHHHHHHHHHHHHHHHH
Q 033121 57 QVKNLFLAGSYTK-QDYID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 57 p~~~L~lAGd~t~-~~~pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
.+++|||||+-++ +.|-| .+.-|+.||..|+..+...
T Consensus 367 ~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~ 406 (408)
T COG2081 367 KVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAW 406 (408)
T ss_pred cCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhh
Confidence 3689999999885 44545 8899999999999887654
No 89
>PRK12839 hypothetical protein; Provisional
Probab=83.44 E-value=1.5 Score=38.09 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=31.6
Q ss_pred CCCCCCEEEcccccc----CCCC--C-cHHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK----QDYI--D-IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~----~~~p--a-tmeGAv~SG~~AA~~Il~~~ 94 (126)
..||+|||-||+.+. ..|| + ++-.|+.+|+.|++.+.+..
T Consensus 522 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~ 568 (572)
T PRK12839 522 DTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGST 568 (572)
T ss_pred CCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 457899999998653 3565 3 78899999999999887653
No 90
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=83.42 E-value=1.4 Score=37.93 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
..+.++|||.|||-. .|-+.+..|-..|..+|+.|+++..
T Consensus 445 ~~t~i~gLy~aGdGA--G~argI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 445 LSTSIKGLYPAGDGA--GLARGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred ceeeecceEEccccc--cccchhHHHhhhhHHHHHHHHHHhc
Confidence 567789999999876 4677999999999999999998754
No 91
>PRK14727 putative mercuric reductase; Provisional
Probab=83.35 E-value=1.7 Score=36.70 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=31.2
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.+++||-+||-+. .|..++-|+..|+.||+.|+.
T Consensus 308 ~~~Ts~~~IyA~GD~~~--~~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 308 AMETSAPDIYAAGDCSD--LPQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred CeecCCCCEEEeeecCC--cchhhhHHHHHHHHHHHHHcC
Confidence 35677899999999884 466788899999999998863
No 92
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=83.33 E-value=2.7 Score=34.79 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=33.1
Q ss_pred CCCCCEEEccccccC---CCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 56 TQVKNLFLAGSYTKQ---DYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 56 tp~~~L~lAGd~t~~---~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
+..+|||.+||-+.. .+|.+..-|+..|..+|+.|.+.+.
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 467899999998863 3566888899999999999988764
No 93
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.25 E-value=1.9 Score=37.17 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=32.9
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~~ 96 (126)
.+|.++|||.+||-+.. .+..+..|+..|+.||..|.+.+..
T Consensus 269 ~~Ts~p~IyAaGDv~~~-~~~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 269 METNVPGVYAAGDLRPK-ELRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred cccCCCCEEEceeccCC-CcchheeHHhhHHHHHHHHHHHHHh
Confidence 45677899999997643 2345678999999999999887655
No 94
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=82.54 E-value=2 Score=37.13 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCCCCEEEcccccc----CCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK----QDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~----~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
..||+|||-||+-+. ..||+ ++-.|+.+|+.|++.+...
T Consensus 504 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 504 GSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred CCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 457899999998764 44553 7889999999999987654
No 95
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=82.38 E-value=1.6 Score=37.85 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCCCCCEEEcccccc----CCCC--C-cHHHHHHHHHHHHHHHHHHHh
Q 033121 55 KTQVKNLFLAGSYTK----QDYI--D-IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~----~~~p--a-tmeGAv~SG~~AA~~Il~~~~ 95 (126)
..||+|||-||+.+. ..|| + ++-.|+.+|+.|++.+.+...
T Consensus 525 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 525 GQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred CCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 457899999997552 3454 3 788899999999998876543
No 96
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=82.30 E-value=9.7 Score=28.70 Aligned_cols=32 Identities=25% Similarity=0.087 Sum_probs=27.1
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYI 90 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~I 90 (126)
+|+++.||.-+..-|- .|+-|+.+|..||+.|
T Consensus 261 ~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 261 GNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 7999999988766664 8999999999998764
No 97
>PLN02815 L-aspartate oxidase
Probab=82.29 E-value=2.5 Score=37.08 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=32.0
Q ss_pred CCCCCCCCCEEEccccccCCCC-----C--cHHHHHHHHHHHHHHHHHH
Q 033121 52 PDQKTQVKNLFLAGSYTKQDYI-----D--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 52 p~~~tp~~~L~lAGd~t~~~~p-----a--tmeGAv~SG~~AA~~Il~~ 93 (126)
...+|+++|||-||+-+.+... + ++-.++..|++|++.+...
T Consensus 384 ~~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~ 432 (594)
T PLN02815 384 LQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 432 (594)
T ss_pred CCCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999998754322 2 6788888999999987653
No 98
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.22 E-value=1.2 Score=37.91 Aligned_cols=43 Identities=23% Similarity=0.148 Sum_probs=31.7
Q ss_pred CCCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 52 PDQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 52 p~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
+..+|.++|||.|||-+...+. .+.-|+..|..||..+.+.+.
T Consensus 470 ~~l~Ts~p~IyAaGDv~~~~~k-~~~~A~~eG~~Aa~~~~~~l~ 512 (517)
T PRK15317 470 ARGATSVPGVFAAGDCTTVPYK-QIIIAMGEGAKAALSAFDYLI 512 (517)
T ss_pred cCCCCCCCCEEECccccCCCCC-EEEEhhhhHHHHHHHHHHHHh
Confidence 3466778999999999864332 466777888888877776654
No 99
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.19 E-value=2 Score=37.47 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=30.0
Q ss_pred CCCCCEEEccccccCCCC-----C--cHHHHHHHHHHHHHHHHHH
Q 033121 56 TQVKNLFLAGSYTKQDYI-----D--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 56 tp~~~L~lAGd~t~~~~p-----a--tmeGAv~SG~~AA~~Il~~ 93 (126)
++++|||-||+.+..... + ++-.|+..|++|++.+.+.
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 378999999998764333 2 7888999999999987654
No 100
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=82.15 E-value=2.9 Score=35.25 Aligned_cols=37 Identities=19% Similarity=0.020 Sum_probs=31.8
Q ss_pred CCCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHH
Q 033121 58 VKNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 58 ~~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~ 94 (126)
.+|+++.||......|- .|.-|+.||+.||+.|.+.+
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 36899999998777764 88999999999999998765
No 101
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=82.08 E-value=3.2 Score=33.15 Aligned_cols=42 Identities=12% Similarity=-0.019 Sum_probs=32.2
Q ss_pred CCC-CCCCEEEccccccCC---CCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 54 QKT-QVKNLFLAGSYTKQD---YIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 54 ~~t-p~~~L~lAGd~t~~~---~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
.++ ..+|||.+||-+... .|.+..-|+..|+.+|+.|.+.+.
T Consensus 266 l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~ 311 (364)
T TIGR03169 266 LQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLR 311 (364)
T ss_pred cccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhc
Confidence 454 678999999998532 233667799999999999987753
No 102
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=81.96 E-value=2.4 Score=36.95 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCCCCCEEEcccccc----CCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK----QDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~----~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
..||+|||-||+.+. ..|++ ++-.|+.+|+.|++.+.+.
T Consensus 524 g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~ 569 (584)
T PRK12835 524 DSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAV 569 (584)
T ss_pred CCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHh
Confidence 458999999998764 34554 5788999999999988665
No 103
>PRK13748 putative mercuric reductase; Provisional
Probab=81.77 E-value=2.1 Score=36.58 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=30.8
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYIC 91 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il 91 (126)
..+|.++|||.+||-+. .|..+.-|+..|+.||..|.
T Consensus 390 ~~~Ts~~~IyA~GD~~~--~~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 390 GMRTSVPHIYAAGDCTD--QPQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred CcccCCCCEEEeeecCC--CccchhHHHHHHHHHHHHHc
Confidence 35677899999999985 36678889999999999886
No 104
>PRK07804 L-aspartate oxidase; Provisional
Probab=81.65 E-value=2.7 Score=36.15 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCCCCCCCEEEccccccCC-----CCC--cHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQD-----YID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~-----~pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
..+|+++|||-|||-+... +.+ ++-.++..|++|++.+.+.
T Consensus 365 ~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~ 412 (541)
T PRK07804 365 YGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAH 412 (541)
T ss_pred CCcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568899999999987532 222 5677888999999887654
No 105
>PRK07121 hypothetical protein; Validated
Probab=81.50 E-value=2 Score=36.20 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=29.8
Q ss_pred CCCCCCEEEcccccc----CCCCC--cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK----QDYID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~----~~~pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
..|++|||-||+.+. ..|++ ++-.|+.+|+.|++.+.+.
T Consensus 446 g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 446 GAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 457899999998764 33433 7888999999999987643
No 106
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=81.24 E-value=7.3 Score=32.75 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=35.9
Q ss_pred HHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCC-CCCEEEccccccCCCCCcHHHHHHHHHHHHHHHH
Q 033121 13 AKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQ-VKNLFLAGSYTKQDYIDIMEGASLSGRQASAYIC 91 (126)
Q Consensus 13 l~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp-~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il 91 (126)
..++-+..|......++.+-....- .|..+|-. .+.+++. ++||||||+-+.+ -|+.|.|. +|..|+--+.
T Consensus 314 Q~~~~r~IpGLe~a~~~r~Gy~~ey--~~v~~~~l---~~~l~~k~~~~lf~AGqi~G~--~Gy~eaaa-~G~~ag~na~ 385 (392)
T PF01134_consen 314 QKRIFRSIPGLENAEILRPGYAHEY--DFVDPPQL---LNTLETKKIPGLFFAGQINGT--EGYEEAAA-QGLIAGINAA 385 (392)
T ss_dssp HHHHHTTSTTTTT--EEE--EEEEE--EEE-GGGB---BTTSBBSSSBTEEE-GGGGTB---SHHHHHH-HHHHHHHHHH
T ss_pred HHHHhhcCCChhcChhhheEEeeee--eEEehhhc---ccceEECCCCCceECCCCcch--hHHHHHHH-HHHHHHHHHH
Confidence 3444455677644444433211111 12223322 2355555 7899999988865 44555554 7887775554
Q ss_pred HH
Q 033121 92 NA 93 (126)
Q Consensus 92 ~~ 93 (126)
+.
T Consensus 386 ~~ 387 (392)
T PF01134_consen 386 RR 387 (392)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 107
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=80.90 E-value=2.6 Score=36.91 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCCCCCCCEEEccccccCCC----CC--cHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDY----ID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~----pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
..+|.++|||.||+.....+ .+ ++-.++..|++|++.+...
T Consensus 378 ~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~ 424 (603)
T TIGR01811 378 DQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPN 424 (603)
T ss_pred CCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999753323 12 7788999999999887654
No 108
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=80.79 E-value=2.9 Score=34.79 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=30.9
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.++|||.+||-+.. +...+-|+..|+.||+.|+.
T Consensus 288 ~~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 288 YSRTSIPSIYAVGDVTDR--INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CCccCCCCEEEeeccCCC--ccchhHHHHHHHHHHHHHhc
Confidence 457778999999999853 44778999999999988863
No 109
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=80.79 E-value=3.3 Score=33.61 Aligned_cols=37 Identities=19% Similarity=0.011 Sum_probs=32.2
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHHh
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~~ 95 (126)
+|++++||.-....|- .|.-|+.||..||+.|.+.+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999887774 889999999999999987754
No 110
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=80.77 E-value=2.4 Score=34.30 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=30.2
Q ss_pred CCCCCCCCEEEccccccCC-C-CCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQD-Y-IDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~-~-patmeGAv~SG~~AA~~Il~ 92 (126)
..+|..+|||.|||-.... . ...+..|+.+|+.+|+-|+.
T Consensus 260 ~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 260 YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLG 301 (377)
T ss_pred CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcC
Confidence 3567789999999988532 1 13577799999999988864
No 111
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=80.62 E-value=2.5 Score=35.11 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.++|||.+||-+. ++....-|+..|+.||..|..
T Consensus 293 ~~~ts~~~IyA~GD~~~--~~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 293 HTQTSVPGIYAAGDVNG--KPPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred CcccCCCCEEEEEecCC--CccchhHHHHHHHHHHHHhcC
Confidence 45677899999999985 355678899999999998864
No 112
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=80.59 E-value=2.7 Score=36.44 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=30.3
Q ss_pred CCCCCCEEEcccccc----CCCCC---cHHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK----QDYID---IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~----~~~pa---tmeGAv~SG~~AA~~Il~~~ 94 (126)
..|++|||-||..+. ..||+ ++-.|+.+|+.|++.+....
T Consensus 526 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 526 GQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred CCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 457899999997764 44553 56779999999998886553
No 113
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=80.51 E-value=1.3 Score=36.54 Aligned_cols=31 Identities=29% Similarity=0.199 Sum_probs=25.9
Q ss_pred CCCCEEEccccccCCCCC---cHHHHHHHHHHHH
Q 033121 57 QVKNLFLAGSYTKQDYID---IMEGASLSGRQAS 87 (126)
Q Consensus 57 p~~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA 87 (126)
-++||||||+-++-+-+. .++-|+.||..|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 358999999999765543 8999999999886
No 114
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=80.44 E-value=7.9 Score=33.04 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=22.1
Q ss_pred CCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 033121 58 VKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNA 93 (126)
Q Consensus 58 ~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~ 93 (126)
++||||||.-+.. -|+ +-|+.+|..|+..+.+.
T Consensus 330 ~~~l~~AGqi~g~--~Gy-~ea~a~G~~Ag~n~~~~ 362 (436)
T PRK05335 330 RPNLFFAGQITGV--EGY-VESAASGLLAGINAARL 362 (436)
T ss_pred CCCEEeeeeecCc--hHH-HHHHHHHHHHHHHHHHH
Confidence 5899999988854 223 35666777776555443
No 115
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=80.38 E-value=2.2 Score=37.09 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=29.8
Q ss_pred CCCCCCEEEcccccc----CCCCC---cHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK----QDYID---IMEGASLSGRQASAYIC 91 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~----~~~pa---tmeGAv~SG~~AA~~Il 91 (126)
..||+|||-||+.+. ..||+ ++-.|+.+|+.|++.+.
T Consensus 519 g~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 519 GSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred CCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 458999999998764 35664 78889999999998764
No 116
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=80.34 E-value=2.5 Score=37.12 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=30.2
Q ss_pred CCCCCCEEEccccccCCC-----CC-cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTKQDY-----ID-IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~~-----pa-tmeGAv~SG~~AA~~Il~~ 93 (126)
.|+++|||-||+-....| ++ ++-+|+..|++|++.+.+.
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~ 446 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADY 446 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHH
Confidence 478999999999754222 33 7888999999999887654
No 117
>PRK14694 putative mercuric reductase; Provisional
Probab=80.33 E-value=2.7 Score=35.24 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=30.6
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYIC 91 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il 91 (126)
..+|.+++||.+||-+. .|..+.-|+..|+.||..|+
T Consensus 297 ~~~Ts~~~IyA~GD~~~--~~~~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 297 HLQTTVSGIYAAGDCTD--QPQFVYVAAAGGSRAAINMT 333 (468)
T ss_pred CcccCCCCEEEEeecCC--CcccHHHHHHHHHHHHHHhc
Confidence 35677899999999985 35678889999999998875
No 118
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=80.14 E-value=2.2 Score=35.11 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=31.5
Q ss_pred CCCCCCCCEEEccccccC--------CCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQ--------DYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~--------~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|..+|||-+||-+.. .++...+.|...|+.+|+.|..
T Consensus 269 ~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 269 YGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred CcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcC
Confidence 456778999999999863 2355778899999999988763
No 119
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.14 E-value=2.7 Score=35.35 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.+++||.+||-+. .|...+-|+..|+.||+.|..
T Consensus 299 ~~~t~~p~VyAiGDv~~--~~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 299 QCRTNVPHIFAIGDIVG--QPMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred CcccCCCCEEEehhhcC--CcccHHHHHHHHHHHHHHHcC
Confidence 34677899999999874 355789999999999998863
No 120
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=79.62 E-value=3.4 Score=35.23 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=31.4
Q ss_pred CCCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 52 PDQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 52 p~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
+..+|.++|||.+||-+.. |...+-|+..|+.||+.|+.
T Consensus 312 ~~l~Ts~~~IyA~GDv~~~--~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 312 EFSRTNVPNIYAIGDVTDR--VMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CCCcCCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 3456778999999999853 45777899999999998863
No 121
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=79.54 E-value=3 Score=34.04 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=31.1
Q ss_pred CCCCCCCCEEEccccccCCCC-------CcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYI-------DIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~p-------atmeGAv~SG~~AA~~Il~ 92 (126)
..+|..+|||.+||-....++ .+.+-|...|+.||+.|+.
T Consensus 262 ~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 262 ACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred CCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcC
Confidence 456778999999998854332 3568899999999998863
No 122
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.49 E-value=0.92 Score=38.67 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=31.0
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~ 94 (126)
..+|.++|||.|||-+...+. ...-|+..|..||..|.+.+
T Consensus 472 ~~~Ts~p~IyAaGDv~~~~~~-~~~~A~~~G~~Aa~~i~~~~ 512 (515)
T TIGR03140 472 RGRTSVPGIFAAGDVTTVPYK-QIIIAMGEGAKAALSAFDYL 512 (515)
T ss_pred CCCCCCCCEEEcccccCCccc-eEEEEEccHHHHHHHHHHHH
Confidence 356778999999999865332 34568889999998887754
No 123
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=79.23 E-value=4.6 Score=35.40 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=32.6
Q ss_pred CCCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 033121 52 PDQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 52 p~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~ 94 (126)
...+|.++|||-|||-.....+....+++..|+.|++.+.+..
T Consensus 389 ~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~ 431 (608)
T PRK06854 389 YNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYI 431 (608)
T ss_pred cccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999998865444566778888888887776554
No 124
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=79.11 E-value=4.5 Score=35.85 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=30.8
Q ss_pred CCC-CCCCEEEccccccCCCCC-------cHHHHHHHHHHHHHHHHHHH
Q 033121 54 QKT-QVKNLFLAGSYTKQDYID-------IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 54 ~~t-p~~~L~lAGd~t~~~~pa-------tmeGAv~SG~~AA~~Il~~~ 94 (126)
.++ +++|||-||+.+...+.+ ++-.|+..|++|++.+.+..
T Consensus 381 ~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~ 429 (657)
T PRK08626 381 GESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFC 429 (657)
T ss_pred CCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 455 589999999987643322 67889999999998876543
No 125
>PRK07395 L-aspartate oxidase; Provisional
Probab=79.00 E-value=3.1 Score=36.08 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=29.1
Q ss_pred CCCCCCCCEEEccccccCCCCC-------cHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYID-------IMEGASLSGRQASAYIC 91 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~pa-------tmeGAv~SG~~AA~~Il 91 (126)
..+|+++|||-||+-+.....+ ++-.++..|++|++.+.
T Consensus 355 ~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 355 NNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999987543332 55667788999988774
No 126
>PRK08275 putative oxidoreductase; Provisional
Probab=78.38 E-value=3.4 Score=35.56 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=31.1
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~ 94 (126)
..+|.+++||-|||...+. .-++-+|+..|++|++.+.+..
T Consensus 364 ~~~t~i~gl~a~Ge~~~~~-~~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 364 KAETTVPGLYAAGDMASVP-HNYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CCccCCCCEEECcccCCch-hHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999976432 2377788899999998876543
No 127
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.36 E-value=3.5 Score=34.27 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=31.4
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|..++||.+||-+. .|....-|+..|+.||+.|+.
T Consensus 296 ~~~t~~~~VyAiGD~~~--~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 296 QLRTNVPNIYAIGDIVG--GPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCccCCCCEEEeeecCC--CcchHHHHHHHHHHHHHHHcC
Confidence 34677899999999874 466889999999999998874
No 128
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.36 E-value=3.5 Score=34.47 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|..++||.+||-+. .+...+-|+..|+.||+.|..
T Consensus 298 ~~~Ts~p~IyAiGD~~~--~~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 298 YMRTNVPHIYAIGDVTA--KLQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred CcccCCCCEEEEeecCC--CcccHhHHHHHHHHHHHHHcC
Confidence 35677889999999985 355888999999999998863
No 129
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=78.08 E-value=3.6 Score=34.25 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=31.0
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.+++||.+||-+.. +....-|+..|+.||+.|+.
T Consensus 291 ~~~Ts~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 291 TLRTSNPGIYAAGDVTGG--LQLEYVAAKEGVVAAENALG 328 (463)
T ss_pred CccCCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHhcC
Confidence 356778999999998864 45778899999999998864
No 130
>PRK06370 mercuric reductase; Validated
Probab=77.78 E-value=4.2 Score=33.93 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=30.9
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.++|||.+||-+.. +...+.|...|+.||+.|+.
T Consensus 296 ~l~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 296 QLRTTNPGIYAAGDCNGR--GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCcCCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHhC
Confidence 456778999999998753 45778999999999998864
No 131
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=77.66 E-value=4.2 Score=33.59 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=29.1
Q ss_pred CCCCCCEEEcccccc-----CCCC-C-cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK-----QDYI-D-IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~-----~~~p-a-tmeGAv~SG~~AA~~Il~~ 93 (126)
..|++|||-||+-+. ..|. + ++-.|+.+|+.|++.+.+.
T Consensus 384 g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 384 AVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 457899999998653 2344 2 6788899999999887643
No 132
>PLN02507 glutathione reductase
Probab=77.65 E-value=4 Score=34.81 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=31.4
Q ss_pred CCCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 52 PDQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 52 p~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
+..+|.++|||.+||-+.. +...+-|+..|+.||+-|+.
T Consensus 324 ~~~~Ts~p~IyAiGDv~~~--~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 324 EYSRTNIPSIWAIGDVTNR--INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCCcCCCCCEEEeeEcCCC--CccHHHHHHHHHHHHHHHcC
Confidence 3457778999999999853 44778999999999988753
No 133
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=77.56 E-value=3.5 Score=38.15 Aligned_cols=38 Identities=24% Similarity=0.126 Sum_probs=31.3
Q ss_pred CCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 033121 56 TQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 56 tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~~ 96 (126)
|.+++||.|||-+.. ..+..|+..|+.||..|...++.
T Consensus 436 t~v~gVyaaGD~~g~---~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 436 DAVQGCILAGAANGL---FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCCeEEeeccCCc---cCHHHHHHHHHHHHHHHHHHcCC
Confidence 457899999997742 47788999999999999888764
No 134
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=77.48 E-value=3.8 Score=34.93 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
.+|.++|||-+||.+...+ .-+-|..-|+.||+.|+.
T Consensus 298 ~~Tnvp~IyA~GDV~~~~~--Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 298 MTTNVPGIYAIGDVIGGPM--LAHVAMAEGRIAAENIAG 334 (454)
T ss_pred cccCCCCEEEeeccCCCcc--cHhHHHHHHHHHHHHHhC
Confidence 4555899999999987633 789999999999999886
No 135
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=77.21 E-value=3.7 Score=34.98 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCCCCCEEEccccccCC----CCC--cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTKQD----YID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~----~pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
.+|+++||-||+-+... |++ ++-.|+.+|+.|++.+...
T Consensus 458 g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~ 502 (506)
T PRK06481 458 GSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEF 502 (506)
T ss_pred CCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 36899999999976433 322 6778899999999988654
No 136
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=77.06 E-value=2.4 Score=34.16 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=32.4
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~~~ 95 (126)
..+|.+++||-|||-+...+- .+-.|.-.|-.||..+.+.+.
T Consensus 260 ~~~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 260 EMETSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred CcccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhh
Confidence 368889999999999976544 566677778888887777654
No 137
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=76.79 E-value=3.1 Score=36.19 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=34.5
Q ss_pred CCCCCCCCEEEccccccCCCCC-------cHHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYID-------IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~pa-------tmeGAv~SG~~AA~~Il~~~ 94 (126)
.-+|.+++||-+|+-..+...| |+--++..|.+||+.|....
T Consensus 349 ~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 349 NGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred CCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 4578899999999999988766 56667778999999998764
No 138
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=76.76 E-value=4.2 Score=34.20 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=30.6
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.+++||.+||-+.. |....-|+..|+.||+.|..
T Consensus 309 ~~~Ts~~~VyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 309 HCRTNVPNVYAIGDVVRG--PMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CCccCCCCEEEEEeccCC--cchHHHHHHHHHHHHHHHcC
Confidence 346778899999998853 45778899999999998863
No 139
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=76.30 E-value=2.8 Score=35.75 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=29.8
Q ss_pred CCCCCCEEEcccccc----CCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK----QDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~----~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
..||+|||-||+-+. ..||+ ++-.|+.+|+.|++.+..
T Consensus 466 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 466 GRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 457899999999763 45653 589999999999987743
No 140
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=76.02 E-value=6.6 Score=33.39 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=32.0
Q ss_pred HHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCC-CCCEEEccccccCCCCCcHHHHHHHHHHH
Q 033121 15 QVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQ-VKNLFLAGSYTKQDYIDIMEGASLSGRQA 86 (126)
Q Consensus 15 ~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp-~~~L~lAGd~t~~~~patmeGAv~SG~~A 86 (126)
.+-+..|+...++++.+-+... -.|..+|.. +.+.+++. ++||||||--+.+ -||.|.|. +|..|
T Consensus 289 ~~~r~ipgle~a~~~r~g~~~~--~~~i~~p~~--L~~~l~~k~~~~lf~AGQi~G~--~GY~Eaaa-~Gl~a 354 (433)
T TIGR00137 289 RVFRLIPGLENAEFVRMGVMHR--NTFINSPQL--LTASLHFKDRQTLFFAGQLTGV--EGYVASTA-GGWLA 354 (433)
T ss_pred HHHhcCcCccceEEeecceEEe--eeeeCCHHH--hhHHhccCCCCCEEECcccccc--hHHHHHHH-HHHHH
Confidence 3344557654344443322211 113334443 34444443 4799999955533 45777664 44444
No 141
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=75.95 E-value=4.6 Score=33.45 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=30.9
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNA 93 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~ 93 (126)
.++.+++||.+||-+. .|....-|+..|+.||+.|...
T Consensus 295 l~t~~~~IyaiGD~~~--~~~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 295 MRTNVPGIYAIGDVIG--GPMLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred cccCCCCEEEeeecCC--CcccHHHHHHHHHHHHHHHcCC
Confidence 4566789999999875 3557889999999999998743
No 142
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=75.74 E-value=4.2 Score=33.97 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHH
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYIC 91 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il 91 (126)
.+|.++|||.+||-+. ++...+-|+..|+.||..+.
T Consensus 293 ~~ts~~~VyA~GD~~~--~~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 293 MQTNVPHIYACGDVIG--GIQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred eecCCCCEEEEeecCC--CcccHHHHHHHHHHHHHHHc
Confidence 4566789999999884 46678899999999998875
No 143
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=75.62 E-value=3.5 Score=34.79 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=36.8
Q ss_pred CCCCCC-CCCEEEccccccCC----CCCcHHHHHHHHHHHHHHHHHHHhh
Q 033121 52 PDQKTQ-VKNLFLAGSYTKQD----YIDIMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 52 p~~~tp-~~~L~lAGd~t~~~----~patmeGAv~SG~~AA~~Il~~~~~ 96 (126)
|.++.+ .++||.+||-..-. .|.+-+.|...|+.+|+-|.+.+..
T Consensus 284 ~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 284 PTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 434443 57999999988655 4789999999999999999998776
No 144
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=75.31 E-value=7.1 Score=32.39 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEE-EccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 14 KQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLF-LAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 14 ~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~-lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
++|.++|... .+...+.| .+-|.+.|.. ..|+.... +||| ..|-+- .-++||-+..+|+.+|..+.+
T Consensus 279 ~~L~~lF~~~-----~~~~~~~W-~AYP~~~p~~--~~~~~~L~-~glyY~n~iE~---~aStME~sai~akNvA~L~~~ 346 (368)
T PF07156_consen 279 EFLSQLFSSY-----SEVKRKEW-LAYPHYSPPE--KFPPFKLH-DGLYYTNAIES---AASTMETSAIAAKNVALLIYD 346 (368)
T ss_pred HHHHHHhhcc-----CceeeeeE-eCCCCCCCCC--CCCCeEee-CCeeEchhHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3566667432 33556778 3334444322 12222111 5776 444322 235999999999999999988
Q ss_pred HHhh
Q 033121 93 AREE 96 (126)
Q Consensus 93 ~~~~ 96 (126)
.+..
T Consensus 347 ~~~~ 350 (368)
T PF07156_consen 347 RWNG 350 (368)
T ss_pred HHhh
Confidence 7755
No 145
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=75.22 E-value=3.7 Score=35.28 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=28.5
Q ss_pred CCCCCCEEEcccccc------CCC---CC-cHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTK------QDY---ID-IMEGASLSGRQASAYICN 92 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~------~~~---pa-tmeGAv~SG~~AA~~Il~ 92 (126)
-.|++|||-||+-+. ..| ++ ++-.|+.+|+.|++.+.+
T Consensus 501 g~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 501 GTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 457899999998874 112 13 678899999999987753
No 146
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=75.10 E-value=5.3 Score=33.88 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.+++||.+||-+.. .+...+-|+..|+.+|+.|+.
T Consensus 305 ~~~Ts~p~IyA~GDv~~~-~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 305 EEQTNVPYIYAVGDILED-KQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CcccCCCCEEEEEEecCC-CccchHHHHHHHHHHHHHHhc
Confidence 356778999999998852 345667899999999998864
No 147
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=73.41 E-value=5.7 Score=33.33 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=30.6
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.++|||.+||-+. .+...+-|...|+.||+.++.
T Consensus 299 ~~~Ts~~~IyA~GD~~~--~~~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 299 VSRTSVPGIYAAGDCTG--VLPLASVAAMQGRIAMYHALG 336 (466)
T ss_pred CcccCCCCEEEEeeccC--CccchhHHHHHHHHHHHHHcC
Confidence 45677899999999985 345778999999999887763
No 148
>PTZ00052 thioredoxin reductase; Provisional
Probab=73.32 E-value=5.6 Score=33.84 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
+|.+++||.+||-+. ..|...+-|+..|+.+|+.|+.
T Consensus 304 ~Ts~p~IyAiGDv~~-~~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 304 CTNIPNIFAVGDVVE-GRPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred cCCCCCEEEEEEecC-CCcccHHHHHHHHHHHHHHHhC
Confidence 577889999999774 2456788999999999988863
No 149
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=72.46 E-value=4.6 Score=33.57 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=28.1
Q ss_pred CCCCCCCCEEEccccccCC--------CCCcHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQD--------YIDIMEGASLSGRQASAYIC 91 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~--------~patmeGAv~SG~~AA~~Il 91 (126)
..+|..+|||.+||-+... ++...+.|...|+.+|+.|.
T Consensus 264 ~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 264 KFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred CcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhc
Confidence 4567789999999998632 22345668888888887775
No 150
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=71.40 E-value=6.3 Score=33.06 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=31.2
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.+++||.+||-+.. |...+-|...|+.||+.|+.
T Consensus 300 ~~~Ts~~~IyA~GD~~~~--~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 300 HHRTSVPGVWVIGDVTSG--PMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred CeecCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 356778999999999853 55789999999999988864
No 151
>PLN02546 glutathione reductase
Probab=70.89 E-value=6.8 Score=34.15 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=30.9
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.+++||-+||-+.. +....-|+..|+.+|+-|+.
T Consensus 375 ~l~Ts~p~IYAaGDv~~~--~~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 375 YSRTSVPSIWAVGDVTDR--INLTPVALMEGGALAKTLFG 412 (558)
T ss_pred CceeCCCCEEEeeccCCC--cccHHHHHHHHHHHHHHHcC
Confidence 457778999999999853 45778899999999988764
No 152
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=70.84 E-value=5.6 Score=36.49 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNA 93 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~ 93 (126)
..+|.++|||-|||-....+ .++-+|+..|++|++.+.+.
T Consensus 369 ~~~T~v~GLfAaGE~a~~~~-nsl~~a~v~G~~Ag~~a~~~ 408 (897)
T PRK13800 369 HARTTVPGLYAAGDLACVPH-NYMIGAFVFGDLAGAHAAGT 408 (897)
T ss_pred CCcccCCCeEechhccCcch-hhhhhHHHhHHHHHHHHHHH
Confidence 35778999999999765422 37778888999999988654
No 153
>PTZ00058 glutathione reductase; Provisional
Probab=69.47 E-value=8.3 Score=33.65 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=32.2
Q ss_pred CCCCCCCCEEEccccccCC--------------------------------CCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQD--------------------------------YIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~--------------------------------~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.+++||-+||-+... ++...+-|+..|+.||+.|+.
T Consensus 360 ~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 360 NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 4677889999999999732 255778999999999998864
No 154
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=69.35 E-value=7.7 Score=32.48 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=29.7
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.+++||.+||-+.. +...+-|...|+.+|+-|+.
T Consensus 290 ~~~Ts~~~IyA~GD~~~~--~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 290 YGRTSARGVWALGDVSSP--YQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred CcccCCCCEEEeecccCc--ccChhHHHHHHHHHHHHhcC
Confidence 356778999999998853 34567788999999988864
No 155
>PRK07846 mycothione reductase; Reviewed
Probab=69.05 E-value=8.1 Score=32.36 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.++|||.+||-+.. +...+-|...|+.+|+-|+.
T Consensus 287 ~~~Ts~p~IyA~GD~~~~--~~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 287 YQRTSAEGVFALGDVSSP--YQLKHVANHEARVVQHNLLH 324 (451)
T ss_pred CcccCCCCEEEEeecCCC--ccChhHHHHHHHHHHHHHcC
Confidence 356778999999998853 44667889999998888763
No 156
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=68.90 E-value=5.8 Score=32.58 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=30.0
Q ss_pred CCCCCCCEEEccccccCC--------CCCcHHHHHHHHHHHHHHHHH
Q 033121 54 QKTQVKNLFLAGSYTKQD--------YIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~--------~patmeGAv~SG~~AA~~Il~ 92 (126)
.+|..++||.+||-+... ++.....|...|+.||+.|..
T Consensus 257 ~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 257 FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 456778999999998632 233668899999999988853
No 157
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=67.63 E-value=10 Score=33.54 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=27.0
Q ss_pred CCCCCCCCEEEccccccCCCCC-------cHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYID-------IMEGASLSGRQASAY 89 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~pa-------tmeGAv~SG~~AA~~ 89 (126)
..+|.++|||-||+.. ....+ ++-+|+..|++|++.
T Consensus 414 ~~~T~i~GLyAaGE~~-~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 414 NLMSTIPGLFVIGEAN-FSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred CCccccCCEEECcccc-ccCCCcccccchhHHHHHHHHHHHhHH
Confidence 3468899999999964 33333 477889999998765
No 158
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=66.86 E-value=30 Score=30.54 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=19.8
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQ 85 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~ 85 (126)
+++||+||..+...|- .|+-++.-+..
T Consensus 340 gRVfLaGDAAH~hsP~~GQGmN~giqDA~n 369 (634)
T PRK08294 340 PRVFIAGDACHTHSAKAGQGMNVSMQDGFN 369 (634)
T ss_pred CCEEEEecCccCCCCccccchhhHHHHHHH
Confidence 6999999999887774 56666555443
No 159
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=66.69 E-value=6.8 Score=37.07 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=29.5
Q ss_pred CCCCCCEEEccccccCC----CCC--cHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTKQD----YID--IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~----~pa--tmeGAv~SG~~AA~~Il~~ 93 (126)
..|++|||-||+-+... |++ ++-.|+.+|+.|++.+...
T Consensus 857 ~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~ 901 (1167)
T PTZ00306 857 RRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATI 901 (1167)
T ss_pred CceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 35899999999976432 333 5667899999999887665
No 160
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=66.41 E-value=10 Score=31.76 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=29.5
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYIC 91 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il 91 (126)
..++..++||.+||-+. .|...+-|+..|+.||+.|.
T Consensus 305 ~l~ts~~~IyAiGD~~~--~~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 305 FCQTKERHIYAIGDVIG--EPQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred CcccCCCCEEEeeecCC--CcccHHHHHHHHHHHHHHHc
Confidence 34566789999999874 25578889999999998875
No 161
>PRK07045 putative monooxygenase; Reviewed
Probab=66.27 E-value=17 Score=29.30 Aligned_cols=36 Identities=17% Similarity=-0.002 Sum_probs=29.9
Q ss_pred CCEEEccccccCCCC--C-cHHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYI--D-IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 59 ~~L~lAGd~t~~~~p--a-tmeGAv~SG~~AA~~Il~~~ 94 (126)
+|++++||..+.--| | .++-|+..+...|+.+....
T Consensus 285 grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~ 323 (388)
T PRK07045 285 RNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHL 323 (388)
T ss_pred CCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhc
Confidence 799999999987666 3 89999999999988886543
No 162
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=66.09 E-value=10 Score=33.55 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=24.0
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
..+|.++|||-|||-..+...+..-+++..|..|+..+.+
T Consensus 401 ~~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~ 440 (614)
T TIGR02061 401 NRMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVR 440 (614)
T ss_pred CCccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHH
Confidence 3467899999999977654333233344445555544433
No 163
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=66.05 E-value=10 Score=31.34 Aligned_cols=37 Identities=14% Similarity=0.033 Sum_probs=28.6
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYIC 91 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il 91 (126)
..+|.++|||-+||-+.. +...+-|...|+.+++.|+
T Consensus 279 ~~~Ts~~~IyA~GD~~~~--~~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 279 YLHTTADNIWAMGDVTGG--LQFTYISLDDYRIVRDELL 315 (441)
T ss_pred CcccCCCCEEEeeecCCC--ccchhHHHHHHHHHHHHHc
Confidence 357778999999999864 3456678888888888764
No 164
>PRK06185 hypothetical protein; Provisional
Probab=65.17 E-value=12 Score=30.24 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=36.4
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNAREELVALRKQLAAFESQ 110 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~~~~~~~~~~~~~~~~~ 110 (126)
+|+.+.||..+...|- .|+-|++.+...|+.+...+.......+-|..+|..
T Consensus 284 ~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~ 338 (407)
T PRK06185 284 PGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRR 338 (407)
T ss_pred CCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 6899999999888874 899999999988887776542211122445444443
No 165
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=64.17 E-value=14 Score=28.44 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=29.2
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHHh
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~~ 95 (126)
+++.+.||..+.-.|- .++-|+.++...|+.|.....
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~ 330 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALK 330 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhc
Confidence 5899999999877664 789999999999988877654
No 166
>PRK11445 putative oxidoreductase; Provisional
Probab=63.25 E-value=13 Score=29.80 Aligned_cols=36 Identities=22% Similarity=0.036 Sum_probs=30.9
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~ 94 (126)
+|+++.||.-....|- .+..|+.+|..+|+.|.+..
T Consensus 264 ~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~ 302 (351)
T PRK11445 264 DNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP 302 (351)
T ss_pred CCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc
Confidence 6899999999877775 88999999999999997653
No 167
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=62.54 E-value=16 Score=32.11 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=30.4
Q ss_pred CCCCCCEEEccccccCCC-----CC--cHHHHHHHHHHHHHHHHHHHh
Q 033121 55 KTQVKNLFLAGSYTKQDY-----ID--IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~~-----pa--tmeGAv~SG~~AA~~Il~~~~ 95 (126)
.+.+++||.|||.+.... ++ ++-+++.+|+.|+....+...
T Consensus 366 ~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~ 413 (562)
T COG1053 366 ETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAK 413 (562)
T ss_pred ccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHHH
Confidence 445789999999996443 22 889999999988876655543
No 168
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=59.54 E-value=19 Score=29.09 Aligned_cols=35 Identities=20% Similarity=0.070 Sum_probs=28.7
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
+|++|+||.-+...|- .|+-|+..+...|+.+...
T Consensus 279 grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~ 316 (392)
T PRK08243 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEF 316 (392)
T ss_pred CCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 6899999999877764 8888999888888777654
No 169
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=58.73 E-value=62 Score=26.09 Aligned_cols=75 Identities=23% Similarity=0.153 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCC-CCCCCCEEEccccccCCCCCcHHHHHHHHH
Q 033121 6 DEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQ-KTQVKNLFLAGSYTKQDYIDIMEGASLSGR 84 (126)
Q Consensus 6 eel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~-~tp~~~L~lAGd~t~~~~patmeGAv~SG~ 84 (126)
.+..+.+.+.+.++||......+. ..| .+.+.++|.. .|.. ..|.+|||+|.=+... .+--|-.+|+
T Consensus 326 ~~~~~~l~~~~~~~~P~l~~~~~~----~~w-~G~r~~t~D~---~PiIG~~~~~gl~~a~G~~g~----G~~~ap~~g~ 393 (416)
T PRK00711 326 PARRETLEMVVRDLFPGGGDLSQA----TFW-TGLRPMTPDG---TPIVGATRYKNLWLNTGHGTL----GWTMACGSGQ 393 (416)
T ss_pred HHHHHHHHHHHHHHCCCccccccc----cee-eccCCCCCCC---CCEeCCcCCCCEEEecCCchh----hhhhhhhHHH
Confidence 445677788899999975322322 223 2223333332 2211 1235799988633221 4555666788
Q ss_pred HHHHHHHH
Q 033121 85 QASAYICN 92 (126)
Q Consensus 85 ~AA~~Il~ 92 (126)
..|+.|+.
T Consensus 394 ~la~li~g 401 (416)
T PRK00711 394 LLADLISG 401 (416)
T ss_pred HHHHHHcC
Confidence 88887764
No 170
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=58.58 E-value=16 Score=29.10 Aligned_cols=35 Identities=9% Similarity=-0.072 Sum_probs=29.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
+|++++||..+...|- .|+-|+..+...|+.+...
T Consensus 276 ~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~ 313 (382)
T TIGR01984 276 PRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDA 313 (382)
T ss_pred CCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHh
Confidence 6999999998877763 8899999998888877654
No 171
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=58.52 E-value=10 Score=32.37 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 033121 55 KTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNA 93 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~ 93 (126)
+|.++++|.+||-+.. .+.+--|+..|+.||+.|...
T Consensus 413 ~ts~~~vfa~gD~~~g--~~~vv~ai~eGr~aak~i~~~ 449 (457)
T COG0493 413 QTSIPGVFAGGDAVRG--AALVVWAIAEGREAAKAIDKE 449 (457)
T ss_pred cccCCCeeeCceeccc--hhhhhhHHhhchHHHHhhhHH
Confidence 6777889999999973 469999999999999999844
No 172
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=58.31 E-value=64 Score=27.51 Aligned_cols=30 Identities=10% Similarity=-0.051 Sum_probs=22.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASA 88 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~ 88 (126)
+++||+||.-+...|. .|+-+++-+..-|.
T Consensus 299 gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~Law 331 (547)
T PRK08132 299 GRVLFAGDAAHQVSPFGARGANSGIQDADNLAW 331 (547)
T ss_pred ccEEEEecccccCCCcccccccchHHHHHHHHH
Confidence 7999999999877774 66666666654443
No 173
>PRK06184 hypothetical protein; Provisional
Probab=55.63 E-value=17 Score=30.65 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=23.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYI 90 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~I 90 (126)
+++|++||.-+...|- .|+-++..+..-|..+
T Consensus 281 gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkL 315 (502)
T PRK06184 281 GRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKL 315 (502)
T ss_pred CcEEEeccccccCCCcccccccchHHHHHHHHHHH
Confidence 7999999999877764 6666776666544433
No 174
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=54.41 E-value=24 Score=31.51 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCCCCCC-CCCEEEccccccCCCCCcHHHHHHHHHHHHH
Q 033121 51 RPDQKTQ-VKNLFLAGSYTKQDYIDIMEGASLSGRQASA 88 (126)
Q Consensus 51 rp~~~tp-~~~L~lAGd~t~~~~patmeGAv~SG~~AA~ 88 (126)
.+...+. ++||||||+-..+ ...+.|..+|..|+-
T Consensus 349 ~~~le~k~~~gLf~AGqi~Gt---~Gy~eAaa~Gl~Ag~ 384 (617)
T TIGR00136 349 KPTLETKLIQGLFFAGQINGT---TGYEEAAAQGLMAGI 384 (617)
T ss_pred chhheeCCCCCeEEccccCCc---chHHHHHHHHHHHHH
Confidence 3455555 6899999986543 335567777877663
No 175
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=54.08 E-value=7.9 Score=31.88 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=23.5
Q ss_pred CCCCCEEEccccccCCC----C-C-cHHHHHHHHHHHH
Q 033121 56 TQVKNLFLAGSYTKQDY----I-D-IMEGASLSGRQAS 87 (126)
Q Consensus 56 tp~~~L~lAGd~t~~~~----p-a-tmeGAv~SG~~AA 87 (126)
+|++|||-||+-+...| + + ++-.|+.+|+.|+
T Consensus 401 ~~IpGLyAaG~~~gg~~g~~~~~G~~~~~~~~~GriAg 438 (439)
T TIGR01813 401 KPIPGLFAAGEVTGGVHGANRLGGNAIADCIVFGRIAG 438 (439)
T ss_pred CEecccEEeeecccccCCCCCCchhhhhhhhhhhHhhc
Confidence 57999999999764332 2 2 6677888888875
No 176
>PLN02463 lycopene beta cyclase
Probab=53.99 E-value=1.4e+02 Score=25.34 Aligned_cols=37 Identities=5% Similarity=-0.048 Sum_probs=32.5
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHHh
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~~ 95 (126)
+++...||.-...+|. ++-.++.+|..+|+.|.+.+.
T Consensus 294 ~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~ 333 (447)
T PLN02463 294 QRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLG 333 (447)
T ss_pred CCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999888886 788899999999999988765
No 177
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=53.46 E-value=23 Score=27.99 Aligned_cols=35 Identities=11% Similarity=-0.105 Sum_probs=28.8
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
+++++.||..+.-.|- .++-|+..+...|+.+...
T Consensus 276 ~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~ 313 (385)
T TIGR01988 276 PRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDA 313 (385)
T ss_pred CceEEEecccccCCccccchhhhhHHHHHHHHHHHHHH
Confidence 6999999998766664 8888899999888888654
No 178
>PRK09126 hypothetical protein; Provisional
Probab=53.30 E-value=19 Score=28.80 Aligned_cols=36 Identities=14% Similarity=-0.100 Sum_probs=29.9
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~ 94 (126)
++++++||.-+...|- .++-|+.++...|+.+....
T Consensus 280 ~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~ 318 (392)
T PRK09126 280 KRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAA 318 (392)
T ss_pred cceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHH
Confidence 7999999998877773 78889999999988886643
No 179
>PLN02852 ferredoxin-NADP+ reductase
Probab=53.12 E-value=15 Score=31.74 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=31.8
Q ss_pred CCCCCCEEEccccccCCCCC-cHHHHHHHHHHHHHHHHHHHhh
Q 033121 55 KTQVKNLFLAGSYTKQDYID-IMEGASLSGRQASAYICNAREE 96 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~~pa-tmeGAv~SG~~AA~~Il~~~~~ 96 (126)
.|++++||.|||-... |. .|-.++..+..+|+.|++.+..
T Consensus 383 ~T~ipGvyAaGDi~~G--p~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 383 ADTEPGLYVVGWLKRG--PTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ccCCCCEEEeeeEecC--CCCeeeecHhhHHHHHHHHHHHHHc
Confidence 3678899999998852 43 6777888889999999988654
No 180
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=52.99 E-value=17 Score=30.66 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=28.1
Q ss_pred CCCCEEEccccccCCCCC---cHHH-HHHHHHHHHHHHHHHH
Q 033121 57 QVKNLFLAGSYTKQDYID---IMEG-ASLSGRQASAYICNAR 94 (126)
Q Consensus 57 p~~~L~lAGd~t~~~~pa---tmeG-Av~SG~~AA~~Il~~~ 94 (126)
.++|||.+|+-+...-|. |=+| |+.||..||+.|.+..
T Consensus 379 ~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 379 VIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred eccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 478999999998654443 3333 7779999999998653
No 181
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=51.84 E-value=13 Score=29.58 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=32.6
Q ss_pred CCCCCCEEEccccccCCCCC-----cHHHHHHHHHHHHHHHHHHHhhH
Q 033121 55 KTQVKNLFLAGSYTKQDYID-----IMEGASLSGRQASAYICNAREEL 97 (126)
Q Consensus 55 ~tp~~~L~lAGd~t~~~~pa-----tmeGAv~SG~~AA~~Il~~~~~~ 97 (126)
+.-++|.+++|.+++..-.+ |.-+-+.||..||+++++.++..
T Consensus 273 revvpgMiv~GMEvaE~DGanRMGPTFGaMm~SG~kAaq~aLk~f~~~ 320 (328)
T KOG2960|consen 273 REVVPGMIVAGMEVAELDGANRMGPTFGAMMLSGVKAAQQALKHFAAP 320 (328)
T ss_pred hhccCceEEeeeeeeeccCCcccCcchhhhhhcchhHHHHHHHHhcCc
Confidence 44578999999998643222 66666779999999999987764
No 182
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=51.36 E-value=44 Score=29.86 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCCCCCCC-CCCEEEccccccCCCCCcHHHHH---HHHHHHHHHH
Q 033121 50 FRPDQKTQ-VKNLFLAGSYTKQDYIDIMEGAS---LSGRQASAYI 90 (126)
Q Consensus 50 ~rp~~~tp-~~~L~lAGd~t~~~~patmeGAv---~SG~~AA~~I 90 (126)
+.|.+.+. ++||||||--.. --||.|.|. ..|..||..+
T Consensus 350 L~~~Le~k~~~~lf~AGQinG--t~GYeEaaaqGl~AgiNaa~~~ 392 (618)
T PRK05192 350 LKPTLETKKIKGLFFAGQING--TTGYEEAAAQGLIAGINAALKV 392 (618)
T ss_pred cchhheecCCCCeEECcccCC--ChHHHHHHHHHHHHHHHHHHHh
Confidence 45656664 589999994443 345666664 2455555443
No 183
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=50.81 E-value=28 Score=28.75 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=25.7
Q ss_pred CCCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYIC 91 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il 91 (126)
..+|.++|||.+||-+.. +...+-|+..|+.+++.+.
T Consensus 278 ~~~t~~~~IyaiGD~~~~--~~~~~~a~~~~~~~~~~~~ 314 (438)
T PRK07251 278 YCQTSVPGVFAVGDVNGG--PQFTYISLDDFRIVFGYLT 314 (438)
T ss_pred CcccCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHHc
Confidence 356778999999998743 3455666767776666554
No 184
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=50.24 E-value=50 Score=29.50 Aligned_cols=71 Identities=23% Similarity=0.387 Sum_probs=36.7
Q ss_pred HHHHHHHhCCCCCCCCeeEEEEEEeCCc-cccCCCCCCCCCCCCCCC-CCCEEEccccccCCCCCcHHHHH---HHHHHH
Q 033121 12 VAKQVLALFPSSQGLEVIWSSVVKIGQS-LYHEGPGKDPFRPDQKTQ-VKNLFLAGSYTKQDYIDIMEGAS---LSGRQA 86 (126)
Q Consensus 12 vl~~L~~~fp~~~~~~~~~~~v~r~~~a-~~~~~pG~~~~rp~~~tp-~~~L~lAGd~t~~~~patmeGAv---~SG~~A 86 (126)
|..++.+-.|+.. ..++.|..++ .|.+.+. ..+.|.+.|. +.|||||| .-+.-.|+=|.|- ..|..|
T Consensus 317 VQ~~~irsipGlE-----na~i~rpgYAIEYD~v~p-~qL~~tLEtK~I~GLf~AG--QINGTtGYEEAAaQGliAGiNA 388 (621)
T COG0445 317 VQEQIIRSIPGLE-----NAEILRPGYAIEYDYVDP-RQLKPTLETKKIKGLFFAG--QINGTTGYEEAAAQGLIAGINA 388 (621)
T ss_pred HHHHHHHhCcccc-----cceeeccceeeeecccCh-hhcccchhhceecceEEcc--cccCCchhHHHHhhhHHHHHHH
Confidence 3444455556653 2335555543 2344221 1256766665 58999999 3333344555553 355555
Q ss_pred HHHH
Q 033121 87 SAYI 90 (126)
Q Consensus 87 A~~I 90 (126)
|..+
T Consensus 389 al~~ 392 (621)
T COG0445 389 ALKV 392 (621)
T ss_pred HHHh
Confidence 5444
No 185
>PRK06847 hypothetical protein; Provisional
Probab=48.82 E-value=35 Score=27.05 Aligned_cols=34 Identities=9% Similarity=-0.073 Sum_probs=27.1
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
++++|+||..+.-.|- .++-|++.+...|+.+.+
T Consensus 282 grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~ 318 (375)
T PRK06847 282 GRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR 318 (375)
T ss_pred CeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh
Confidence 6899999999877774 788888888877776643
No 186
>PRK07538 hypothetical protein; Provisional
Probab=48.00 E-value=35 Score=27.80 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=27.8
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
+++.|.||.-+.-+|- .++-|++.+...|+.+.+
T Consensus 297 grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~ 333 (413)
T PRK07538 297 GRVTLLGDAAHPMYPVGSNGASQAILDARALADALAA 333 (413)
T ss_pred CcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 6899999999988885 677788888877777654
No 187
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=47.39 E-value=1.4e+02 Score=23.99 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCCcHHHHHHHHH
Q 033121 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYIDIMEGASLSGR 84 (126)
Q Consensus 5 deel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~patmeGAv~SG~ 84 (126)
+.+..+.+++.+.++||......+ ...| .+.+.++|...+.. -..|.+|+|+|.=+.. . .+--|-.+|+
T Consensus 308 ~~~~~~~l~~~~~~~~P~l~~~~~----~~~w-~G~~~~t~D~~PiI--g~~~~~gl~~a~G~~g---~-G~~~ap~~G~ 376 (407)
T TIGR01373 308 NLPTLEHVLAAILEMFPILSRVRM----LRSW-GGIVDVTPDGSPII--GKTPLPNLYLNCGWGT---G-GFKATPASGT 376 (407)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCCe----EEEe-ccccccCCCCCcee--CCCCCCCeEEEeccCC---c-chhhchHHHH
Confidence 345677889999999997643332 2345 33344444332211 1223579998852221 2 3444555688
Q ss_pred HHHHHHHH
Q 033121 85 QASAYICN 92 (126)
Q Consensus 85 ~AA~~Il~ 92 (126)
..|+.|..
T Consensus 377 ~la~li~~ 384 (407)
T TIGR01373 377 VFAHTLAR 384 (407)
T ss_pred HHHHHHhC
Confidence 88888764
No 188
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=47.19 E-value=29 Score=27.67 Aligned_cols=34 Identities=9% Similarity=-0.115 Sum_probs=28.5
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
++++++||..+...|- .++-|+.++...|+.+..
T Consensus 282 grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~ 318 (395)
T PRK05732 282 HRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQ 318 (395)
T ss_pred CcEEEEeecccccCCccccccchHHHHHHHHHHHHHH
Confidence 6999999999877774 788899999888888754
No 189
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=47.10 E-value=36 Score=27.21 Aligned_cols=36 Identities=14% Similarity=-0.037 Sum_probs=31.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~ 94 (126)
+|+.+.||.-....|. ++.-|++++..+|+.+.+.+
T Consensus 262 ~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~ 300 (388)
T TIGR01790 262 QRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQAL 300 (388)
T ss_pred CCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHh
Confidence 6899999998877775 88999999999999986654
No 190
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=45.67 E-value=34 Score=30.63 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=27.5
Q ss_pred CCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHH
Q 033121 58 VKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 58 ~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~ 92 (126)
+++||.+||-+. .|...+-|...|+.||+.|..
T Consensus 462 v~~IYAiGDv~g--~~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 462 YDNIFCIGDANG--KQMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred CCCEEEEEecCC--CccCHHHHHHHHHHHHHHHcC
Confidence 579999999874 355789999999999998864
No 191
>PRK06753 hypothetical protein; Provisional
Probab=45.47 E-value=52 Score=26.08 Aligned_cols=33 Identities=9% Similarity=-0.029 Sum_probs=27.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYIC 91 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il 91 (126)
+++.+.||..+.-.|- .++-|+..+...++.+.
T Consensus 270 ~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~ 305 (373)
T PRK06753 270 GRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLN 305 (373)
T ss_pred CCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence 6899999999877774 78888888887777663
No 192
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=45.11 E-value=1.4e+02 Score=24.88 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCC-C-CCCCEEEccccccCCCCC-cHHHHHHHH
Q 033121 7 EIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQK-T-QVKNLFLAGSYTKQDYID-IMEGASLSG 83 (126)
Q Consensus 7 el~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~-t-p~~~L~lAGd~t~~~~pa-tmeGAv~SG 83 (126)
...+.+.+.+.++||......+ .+.|.- ...++|.. .|..- . ..+|||+|.= |-+ .+--|..+|
T Consensus 318 ~~~~~l~~~~~~~fP~L~~~~i----~~~W~G-~~~~t~D~---~P~iG~~~~~~gl~~a~G-----~~G~Gv~~a~~~G 384 (460)
T TIGR03329 318 PYEALLTRSLRKFFPALAEVPI----AASWNG-PSDRSVTG---LPFFGRLNGQPNVFYGFG-----YSGNGVAPSRMGG 384 (460)
T ss_pred HHHHHHHHHHHHhCCCcCCCee----eEEEec-eeCCCCCC---CceeeeecCCCCEEEEeC-----cCCCChhHHHHHH
Confidence 3456788889999997643222 345652 22233332 23211 1 2479998852 333 566677789
Q ss_pred HHHHHHHHH
Q 033121 84 RQASAYICN 92 (126)
Q Consensus 84 ~~AA~~Il~ 92 (126)
+..|+.|+.
T Consensus 385 ~~lA~li~g 393 (460)
T TIGR03329 385 QILSSLVLG 393 (460)
T ss_pred HHHHHHhcC
Confidence 988888865
No 193
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=44.80 E-value=18 Score=20.04 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=12.7
Q ss_pred CCCCEEEccccccCCCC
Q 033121 57 QVKNLFLAGSYTKQDYI 73 (126)
Q Consensus 57 p~~~L~lAGd~t~~~~p 73 (126)
+.+|||++|.....+||
T Consensus 22 ~~GNiYv~G~T~~~~fp 38 (38)
T PF06739_consen 22 SNGNIYVTGYTNGNDFP 38 (38)
T ss_pred CCCCEEEEEeecCCCCC
Confidence 34799999977665665
No 194
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=44.19 E-value=35 Score=27.36 Aligned_cols=36 Identities=8% Similarity=-0.105 Sum_probs=28.7
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNAR 94 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~ 94 (126)
++++++||.-+...|- .++-|++.+...|+.+....
T Consensus 280 grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~ 318 (403)
T PRK07333 280 PRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAA 318 (403)
T ss_pred CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHH
Confidence 7999999998877764 78888888888887776543
No 195
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=42.56 E-value=24 Score=29.83 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=33.9
Q ss_pred hCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCCcHHHHH---HHHHHHHHHHH
Q 033121 19 LFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYIDIMEGAS---LSGRQASAYIC 91 (126)
Q Consensus 19 ~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~patmeGAv---~SG~~AA~~Il 91 (126)
+.|....+.++.+-+. ++-+|...|.....--..+ .-+||||||--|.. =|++|+|. ..|+.||+..+
T Consensus 298 mIPgLeNAefvRyGvm--HRNtfinSP~lL~~tl~lk-~~p~l~fAGQitG~--EGYveSaA~Gllag~naa~~~~ 368 (439)
T COG1206 298 MIPGLENAEFVRYGVM--HRNTFINSPKLLDPTLQLK-KRPNLFFAGQITGV--EGYVESAASGLLAGINAARLAL 368 (439)
T ss_pred hcCCcchhhhhhccce--ecccccCChhhhhHHhhcc-cCCCcEEeeeeecc--hhhhHHhhhhHHHhhHHHHHhc
Confidence 3455433444433322 2455666665321111111 12699999966632 34666654 45566665543
No 196
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=41.96 E-value=38 Score=31.19 Aligned_cols=40 Identities=8% Similarity=0.103 Sum_probs=28.6
Q ss_pred CCCCCCCCEEEccccccCCC--CCcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDY--IDIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~--patmeGAv~SG~~AA~~Il~ 92 (126)
..+|..++||.+||-+.... .+.+.-|...|+-||+.|+.
T Consensus 268 ~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 268 SCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred CCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcC
Confidence 35677899999999986422 23567777778777777653
No 197
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=41.90 E-value=41 Score=30.47 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCCCCCCCEEEccccccCCCC--CcHHHHHHHHHHHHHHHHH
Q 033121 53 DQKTQVKNLFLAGSYTKQDYI--DIMEGASLSGRQASAYICN 92 (126)
Q Consensus 53 ~~~tp~~~L~lAGd~t~~~~p--atmeGAv~SG~~AA~~Il~ 92 (126)
..+|..++||.+||-...... +.+.-|+..|+.+|+.|+.
T Consensus 259 ~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 259 SMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICG 300 (785)
T ss_pred CcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcC
Confidence 356778899999999864322 3566678888888887753
No 198
>PRK07190 hypothetical protein; Provisional
Probab=41.61 E-value=43 Score=28.46 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=19.5
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQ 85 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~ 85 (126)
+++|||||..+...|. .||-++.-...
T Consensus 275 gRV~LaGDAAH~h~P~gGQGmN~giqDA~n 304 (487)
T PRK07190 275 DRIFLAGDACHIHSVNGGQGLNTGLADAFN 304 (487)
T ss_pred CcEEEEecccccCCCccccchhhhHHHHHH
Confidence 7999999999887773 56655554443
No 199
>PRK08244 hypothetical protein; Provisional
Probab=41.43 E-value=29 Score=29.13 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=24.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYIC 91 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il 91 (126)
+|++++||.-+...|- .|+-++..+...|..+.
T Consensus 272 gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La 307 (493)
T PRK08244 272 GRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLA 307 (493)
T ss_pred CcEEEeecceeccCCccccccccchhhHHHHHHHHH
Confidence 6999999999887774 66666766655554443
No 200
>PRK06996 hypothetical protein; Provisional
Probab=39.57 E-value=55 Score=26.55 Aligned_cols=34 Identities=3% Similarity=-0.101 Sum_probs=28.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
++++++||.-+...|- .++-|++.+...|+.+..
T Consensus 291 grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~ 327 (398)
T PRK06996 291 GRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD 327 (398)
T ss_pred CCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh
Confidence 6999999999888875 788888888888877743
No 201
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=39.49 E-value=2e+02 Score=23.19 Aligned_cols=37 Identities=11% Similarity=-0.087 Sum_probs=27.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHHHh
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNARE 95 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~~~ 95 (126)
++++|+||.-+.-.|- .+|=|++-...-|+.+.+...
T Consensus 278 ~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~ 317 (387)
T COG0654 278 GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR 317 (387)
T ss_pred CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 6899999999988874 666666666666666655543
No 202
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=38.91 E-value=36 Score=27.24 Aligned_cols=34 Identities=6% Similarity=-0.222 Sum_probs=28.6
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
+|++++||.-+...|- .|+-|++.+...|+.+..
T Consensus 280 ~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~ 316 (388)
T PRK07494 280 GRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVED 316 (388)
T ss_pred CceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHh
Confidence 7999999999888875 888888888888877754
No 203
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=37.48 E-value=1.4e+02 Score=23.00 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCC-C-CCCCEEEccccccCCCCCcHHHHHHH
Q 033121 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQK-T-QVKNLFLAGSYTKQDYIDIMEGASLS 82 (126)
Q Consensus 5 deel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~-t-p~~~L~lAGd~t~~~~patmeGAv~S 82 (126)
+++..+.+++.+.++||.....++. ..|. +.+...+. ..|... . ..+|+|+++=+-.. .|--+-..
T Consensus 258 ~~~~~~~l~~~~~~~~P~l~~~~~~----~~~~-g~r~~t~D---~~piig~~~~~~~~~~~~g~~g~----G~~~~p~~ 325 (337)
T TIGR02352 258 TLGGIKELLRDAYTILPALKEARLL----ETWA-GLRPGTPD---NLPYIGEHPEDRRLLIATGHYRN----GILLAPAT 325 (337)
T ss_pred CHHHHHHHHHHHHHhCCCcccCcHH----Hhee-cCCCCCCC---CCCEeCccCCCCCEEEEcccccC----ceehhhHH
Confidence 3456778899999999976322322 1221 11222222 233222 1 13689988633221 34444457
Q ss_pred HHHHHHHHHH
Q 033121 83 GRQASAYICN 92 (126)
Q Consensus 83 G~~AA~~Il~ 92 (126)
|+..|+.|+.
T Consensus 326 g~~la~~i~~ 335 (337)
T TIGR02352 326 AEVIADLILG 335 (337)
T ss_pred HHHHHHHHhc
Confidence 8888887763
No 204
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=37.14 E-value=1.6e+02 Score=23.23 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCC-CC-CCCEEEccccccCCCCCcHHHHHHHH
Q 033121 6 DEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQK-TQ-VKNLFLAGSYTKQDYIDIMEGASLSG 83 (126)
Q Consensus 6 eel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~-tp-~~~L~lAGd~t~~~~patmeGAv~SG 83 (126)
++..+.+++.+.++||... .+. ..| .+.+..+|. ..|... .| ++|||+|.=+... .+--|-..|
T Consensus 285 ~~~~~~l~~~~~~~~P~~~--~~~----~~~-~g~~~~t~D---~~P~ig~~~~~~gl~~~~G~~g~----G~~~ap~~g 350 (376)
T PRK11259 285 AEDGAELRPFLRNYLPGVG--PCL----RGA-ACTYTNTPD---EHFIIDTLPGHPNVLVASGCSGH----GFKFASVLG 350 (376)
T ss_pred HHHHHHHHHHHHHHCCCCC--ccc----cce-EEecccCCC---CCceeecCCCCCCEEEEecccch----hhhccHHHH
Confidence 5567888999999999653 222 122 122223332 233221 22 5799988533221 334444578
Q ss_pred HHHHHHHHHH
Q 033121 84 RQASAYICNA 93 (126)
Q Consensus 84 ~~AA~~Il~~ 93 (126)
+..|+.|+..
T Consensus 351 ~~la~li~~~ 360 (376)
T PRK11259 351 EILADLAQDG 360 (376)
T ss_pred HHHHHHHhcC
Confidence 8888887654
No 205
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=37.10 E-value=98 Score=25.14 Aligned_cols=34 Identities=18% Similarity=0.016 Sum_probs=28.5
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
++++|.||.-+.-.|- .++-|++.+...|+.+.+
T Consensus 279 grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~ 315 (390)
T TIGR02360 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLE 315 (390)
T ss_pred CCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHH
Confidence 7899999999877774 888899998888887754
No 206
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=36.72 E-value=68 Score=25.86 Aligned_cols=35 Identities=11% Similarity=-0.065 Sum_probs=28.8
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
+|+++.||..+...|- .|+-|++.+...|+.+...
T Consensus 294 ~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~ 331 (415)
T PRK07364 294 HRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTA 331 (415)
T ss_pred CcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHH
Confidence 6999999999877773 8888998888888877543
No 207
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=36.43 E-value=28 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=13.7
Q ss_pred CCCCCCCCCEEEcccccc
Q 033121 52 PDQKTQVKNLFLAGSYTK 69 (126)
Q Consensus 52 p~~~tp~~~L~lAGd~t~ 69 (126)
+..++.++|||.|||-+.
T Consensus 181 ~~~~t~~~~Iya~GD~a~ 198 (201)
T PF07992_consen 181 ENLQTSVPGIYAAGDCAG 198 (201)
T ss_dssp TTSBBSSTTEEE-GGGBE
T ss_pred cccccccccccccccccc
Confidence 456777899999999874
No 208
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=35.92 E-value=62 Score=25.89 Aligned_cols=35 Identities=14% Similarity=-0.084 Sum_probs=28.6
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
+|+.++||.-+...|- .++-|++.+...|+.+.+.
T Consensus 281 ~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~ 318 (391)
T PRK08020 281 PGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNA 318 (391)
T ss_pred CcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHH
Confidence 7999999999888874 8888888888877777654
No 209
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=35.72 E-value=61 Score=26.06 Aligned_cols=35 Identities=6% Similarity=-0.165 Sum_probs=28.2
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
+|++|+||.-+.-.|- .++-|++.+...|+.+.+.
T Consensus 282 ~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~ 319 (392)
T PRK08773 282 GRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQA 319 (392)
T ss_pred CcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHH
Confidence 6999999999888874 7888888888777766544
No 210
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=35.17 E-value=60 Score=27.68 Aligned_cols=33 Identities=12% Similarity=-0.029 Sum_probs=25.1
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYIC 91 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il 91 (126)
+|++|+||.-+...|- .|+-+++.+...|..+.
T Consensus 286 gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa 321 (538)
T PRK06183 286 GRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLA 321 (538)
T ss_pred CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHH
Confidence 6999999999877774 77777777766665543
No 211
>PRK06126 hypothetical protein; Provisional
Probab=34.55 E-value=55 Score=27.84 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=24.7
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYIC 91 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il 91 (126)
+|++|+||.-+...|- .|+-++..+..-|..+.
T Consensus 303 gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La 338 (545)
T PRK06126 303 GRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLA 338 (545)
T ss_pred CCEEEechhhccCCCCcCcccchhHHHHHHHHHHHH
Confidence 7999999998877664 77777777766555543
No 212
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=34.07 E-value=85 Score=25.95 Aligned_cols=35 Identities=11% Similarity=-0.107 Sum_probs=28.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
+|++++||.-+...|- .|+-|+..+...|+.+...
T Consensus 333 ~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~ 370 (437)
T TIGR01989 333 KRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEA 370 (437)
T ss_pred CCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHH
Confidence 6999999999988885 7777788777777766544
No 213
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=33.86 E-value=52 Score=29.14 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=25.6
Q ss_pred CCCCCCCEEEccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 033121 54 QKTQVKNLFLAGSYTKQDYIDIMEGASLSGRQASAYICNA 93 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~patmeGAv~SG~~AA~~Il~~ 93 (126)
..+.+++||+||-... |-.+..++..|..||-....-
T Consensus 507 v~s~~~GIflAG~aqg---PkdI~~siaqa~aAA~kA~~~ 543 (622)
T COG1148 507 VDSNRDGIFLAGAAQG---PKDIADSIAQAKAAAAKAAQL 543 (622)
T ss_pred ccccCCcEEEeecccC---CccHHHHHHHhHHHHHHHHHH
Confidence 4566789999995543 457778887777766554444
No 214
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=32.54 E-value=73 Score=24.36 Aligned_cols=68 Identities=22% Similarity=0.202 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCC--CCCCCEEEccccccCCCCCcHHHHHHHHHHH
Q 033121 9 IRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQK--TQVKNLFLAGSYTKQDYIDIMEGASLSGRQA 86 (126)
Q Consensus 9 ~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~--tp~~~L~lAGd~t~~~~patmeGAv~SG~~A 86 (126)
.+.+++.+.+++|......+... | .+.+...|.. .|... ...+|||+++-+-. ..+.-|..+|+.+
T Consensus 288 ~~~l~~~~~~~~p~l~~~~v~~~----~-~g~r~~t~d~---~p~ig~~~~~~~l~~~~g~~~----~G~~~a~~~a~~~ 355 (358)
T PF01266_consen 288 IDELLERLARLLPGLGDAEVVRS----W-AGIRPFTPDG---RPIIGELPGSPNLYLAGGHGG----HGFTLAPGLAELL 355 (358)
T ss_dssp HHHHHHHHHHHSGGGGGSEEEEE----E-EEEEEEETTS---ECEEEEESSEEEEEEEECETT----CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHhhhcccccc----c-cceeeeccCC---CeeeeecCCCCCEEEEECCCc----hHHHHHHHHHHHH
Confidence 56899999999987643333322 1 1222223322 23211 22469999852221 2566677777777
Q ss_pred HH
Q 033121 87 SA 88 (126)
Q Consensus 87 A~ 88 (126)
|+
T Consensus 356 a~ 357 (358)
T PF01266_consen 356 AD 357 (358)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 215
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=32.48 E-value=81 Score=25.54 Aligned_cols=34 Identities=12% Similarity=-0.052 Sum_probs=27.7
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
++++++||.-+...|- .|+-|++.+..-|+.+..
T Consensus 282 ~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~ 318 (405)
T PRK08850 282 ERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILA 318 (405)
T ss_pred CcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHH
Confidence 6999999999888874 888888888877776654
No 216
>PRK08163 salicylate hydroxylase; Provisional
Probab=32.25 E-value=1e+02 Score=24.65 Aligned_cols=33 Identities=9% Similarity=-0.208 Sum_probs=25.9
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYIC 91 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il 91 (126)
+++.+.||.-+.-.|- .++-|++.+...|+.+.
T Consensus 286 grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~ 321 (396)
T PRK08163 286 GRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALE 321 (396)
T ss_pred CcEEEEecccccCCcchhccHHHHHHHHHHHHHHHH
Confidence 6899999999877774 67777888777776654
No 217
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=32.19 E-value=61 Score=25.82 Aligned_cols=35 Identities=9% Similarity=-0.133 Sum_probs=29.1
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICNA 93 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~~ 93 (126)
+++++.||..+...|- .++-|++.+...|+.+...
T Consensus 280 ~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~ 317 (388)
T PRK07608 280 PRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGR 317 (388)
T ss_pred CceEEEeccccccCCccccccchhHHHHHHHHHHHHHh
Confidence 6899999999877774 8899999998888877543
No 218
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=32.07 E-value=1.1e+02 Score=24.87 Aligned_cols=33 Identities=6% Similarity=-0.119 Sum_probs=23.5
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYIC 91 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il 91 (126)
+++.|.||..+.--|- ..+-|++.+..-|+.+.
T Consensus 300 grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~ 335 (414)
T TIGR03219 300 GRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLG 335 (414)
T ss_pred CcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHH
Confidence 6999999999877775 55666666655555443
No 219
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=29.46 E-value=2e+02 Score=22.98 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhCCCC
Q 033121 7 EIIRRVAKQVLALFPSS 23 (126)
Q Consensus 7 el~~~vl~~L~~~fp~~ 23 (126)
+..+.+++.+.++||..
T Consensus 256 ~~~~~~~~~~~~~~P~l 272 (381)
T TIGR03197 256 ADHAENLERLAECLPAL 272 (381)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 44567788899999875
No 220
>PRK08013 oxidoreductase; Provisional
Probab=29.29 E-value=88 Score=25.39 Aligned_cols=34 Identities=12% Similarity=-0.056 Sum_probs=26.9
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
++++|+||.-+...|- .|+-|++.+..-|+.+..
T Consensus 282 grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~ 318 (400)
T PRK08013 282 HRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRR 318 (400)
T ss_pred CcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHH
Confidence 7999999999887774 788888887766666653
No 221
>smart00539 NIDO Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins.
Probab=28.60 E-value=1.5e+02 Score=21.50 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCcccc
Q 033121 4 PNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYH 42 (126)
Q Consensus 4 sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~ 42 (126)
++..+..++.+++++.|++...-++.+..+..|....+.
T Consensus 20 ~d~~~L~ra~~~v~~~f~~~~~F~a~~v~vvTW~~V~~~ 58 (152)
T smart00539 20 TDHAILDRATESVREGFTDMGGFRAKSVVIVTWENVAAY 58 (152)
T ss_pred CCHHHHHHHHHHHHHHCCCCcCcceeEEEEEECcCcccc
Confidence 567889999999999998643346778889999875443
No 222
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=28.08 E-value=3e+02 Score=21.64 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCC--CCCCCEEEccccccCCCCCcHHHHHHHHHH
Q 033121 8 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQK--TQVKNLFLAGSYTKQDYIDIMEGASLSGRQ 85 (126)
Q Consensus 8 l~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~--tp~~~L~lAGd~t~~~~patmeGAv~SG~~ 85 (126)
.....++.+.++||......+.. .|.-.-+...|.. .|..- .|.+|||+|.=+-.. .+--+-..|+.
T Consensus 291 ~~~~l~~~~~~~~P~l~~~~~~~----~w~g~~~~t~pd~---~P~iG~~~~~~~l~~a~G~~~~----G~~~~p~~g~~ 359 (387)
T COG0665 291 VIAELLRVARALLPGLADAGIEA----AWAGLRPPTTPDG---LPVIGRAAPLPNLYVATGHGGH----GFTLAPALGRL 359 (387)
T ss_pred hHHHHHHHHHHhCccccccccce----eeeccccCCCCCC---CceeCCCCCCCCEEEEecCCCc----ChhhccHHHHH
Confidence 35678889999999764223222 4432111111322 23221 225799988644322 34444457888
Q ss_pred HHHHHHHH
Q 033121 86 ASAYICNA 93 (126)
Q Consensus 86 AA~~Il~~ 93 (126)
+|+.|+..
T Consensus 360 lA~li~g~ 367 (387)
T COG0665 360 LADLILGG 367 (387)
T ss_pred HHHHHcCC
Confidence 98888764
No 223
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=28.07 E-value=1.2e+02 Score=24.46 Aligned_cols=34 Identities=12% Similarity=-0.059 Sum_probs=26.7
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
++++|.||.-+...|- .++-|++.+...|+.+..
T Consensus 285 ~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~ 321 (405)
T PRK05714 285 PGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLH 321 (405)
T ss_pred CCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHH
Confidence 6999999998877774 778888887777766643
No 224
>PLN02697 lycopene epsilon cyclase
Probab=27.94 E-value=4.1e+02 Score=23.15 Aligned_cols=80 Identities=10% Similarity=0.054 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCCCCCCCCEEEccccccCCCCC---cHHHH
Q 033121 3 LPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQKTQVKNLFLAGSYTKQDYID---IMEGA 79 (126)
Q Consensus 3 ~sdeel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~~tp~~~L~lAGd~t~~~~pa---tmeGA 79 (126)
++.+++.+++.+.|... +.. ...+.++..+.... |. ..|.. + +++...||.-...+|. ++-.+
T Consensus 330 l~~~~l~~~L~~~l~~~-Gi~------~~~i~~~E~g~iPm--~g--~~~~~--~-~~vl~vG~AAG~vhPsTGy~v~~~ 395 (529)
T PLN02697 330 MPFDLLKKRLMSRLETM-GIR------ILKTYEEEWSYIPV--GG--SLPNT--E-QKNLAFGAAASMVHPATGYSVVRS 395 (529)
T ss_pred CCHHHHHHHHHHHHHhC-CCC------cceEEEEEeeeecC--CC--CCccc--C-CCeeEeehhhcCCCCchhhhHHHH
Confidence 35567777777777653 311 12234444432211 11 12221 2 5788999999888887 67777
Q ss_pred HHHHHHHHHHHHHHHhh
Q 033121 80 SLSGRQASAYICNAREE 96 (126)
Q Consensus 80 v~SG~~AA~~Il~~~~~ 96 (126)
+.+|..+|+.|.+.+..
T Consensus 396 l~~A~~~A~~ia~~l~~ 412 (529)
T PLN02697 396 LSEAPKYASVIARILKN 412 (529)
T ss_pred HHhHHHHHHHHHHHhhC
Confidence 88999999988887753
No 225
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=27.13 E-value=2.5e+02 Score=22.67 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeeEEEEEEeCCccccCCCCCCCCCCCC-CCCCCCEEEccccccCCCCCcHHHHHHHHH
Q 033121 6 DEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYHEGPGKDPFRPDQ-KTQVKNLFLAGSYTKQDYIDIMEGASLSGR 84 (126)
Q Consensus 6 eel~~~vl~~L~~~fp~~~~~~~~~~~v~r~~~a~~~~~pG~~~~rp~~-~tp~~~L~lAGd~t~~~~patmeGAv~SG~ 84 (126)
.+..+.+++.+.++||...... +..| .+...++|... |.. +.+.+|||++.=+-+ ..+--|...|+
T Consensus 331 ~~~~~~l~~~~~~~~P~l~~~~-----~~~w-~G~r~~t~D~~---PiiG~~~~~~l~~~~G~~~----~G~~~ap~~g~ 397 (410)
T PRK12409 331 ADRIRPLVDWVRRNFPDVSTRR-----VVPW-AGLRPMMPNMM---PRVGRGRRPGVFYNTGHGH----LGWTLSAATAD 397 (410)
T ss_pred HHHHHHHHHHHHHhCCCCCccc-----ccee-cccCCCCCCCC---CeeCCCCCCCEEEecCCcc----cchhhcccHHH
Confidence 3567788899999999764221 2246 33333444322 211 123479887642211 14555666788
Q ss_pred HHHHHHHH
Q 033121 85 QASAYICN 92 (126)
Q Consensus 85 ~AA~~Il~ 92 (126)
..|+.|..
T Consensus 398 ~lA~~i~~ 405 (410)
T PRK12409 398 LVAQVVAQ 405 (410)
T ss_pred HHHHHHcC
Confidence 88877754
No 226
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.30 E-value=44 Score=28.56 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=17.9
Q ss_pred CCCCCCCEEEccccccCCCCC
Q 033121 54 QKTQVKNLFLAGSYTKQDYID 74 (126)
Q Consensus 54 ~~tp~~~L~lAGd~t~~~~pa 74 (126)
-.|.++++|-|||-|...|-.
T Consensus 475 g~TsvpGvFAAGD~T~~~yKQ 495 (520)
T COG3634 475 GETNVPGVFAAGDCTTVPYKQ 495 (520)
T ss_pred CCcCCCceeecCcccCCccce
Confidence 356789999999999998865
No 227
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=24.67 E-value=79 Score=26.86 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=27.8
Q ss_pred CCCCCCCC-CCCCEEEccccccCCCC---CcHHH-HHHHHHHHHHHHH
Q 033121 49 PFRPDQKT-QVKNLFLAGSYTKQDYI---DIMEG-ASLSGRQASAYIC 91 (126)
Q Consensus 49 ~~rp~~~t-p~~~L~lAGd~t~~~~p---atmeG-Av~SG~~AA~~Il 91 (126)
.+||...- +++|||.||.-+...-| +|=.| |+.||..||+.|+
T Consensus 372 ~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 372 QLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred ccCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 35663222 37999999987754333 13333 6779999998873
No 228
>PTZ00367 squalene epoxidase; Provisional
Probab=24.33 E-value=3.9e+02 Score=23.42 Aligned_cols=34 Identities=12% Similarity=-0.099 Sum_probs=27.8
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
+++.+.||.-+.-+|- .|+-|+..+..-|+.+..
T Consensus 337 ~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~ 373 (567)
T PTZ00367 337 KGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG 373 (567)
T ss_pred CCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 6899999999888883 788888888877777753
No 229
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=23.34 E-value=1.3e+02 Score=24.13 Aligned_cols=32 Identities=6% Similarity=-0.124 Sum_probs=25.6
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYI 90 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~I 90 (126)
+|+.+.||.-+.-.|- .++-|++.+...|+.+
T Consensus 273 grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L 307 (374)
T PRK06617 273 NRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIV 307 (374)
T ss_pred CCEEEEEcccccCCCCccccHHHHHHHHHHHHHHH
Confidence 7999999999988884 7777777777666654
No 230
>PRK07588 hypothetical protein; Provisional
Probab=23.18 E-value=1.5e+02 Score=23.74 Aligned_cols=34 Identities=9% Similarity=-0.109 Sum_probs=27.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHHHHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSGRQASAYICN 92 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG~~AA~~Il~ 92 (126)
+++.+.||..+.-.|- .++-|++.+..-|+.+..
T Consensus 279 grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~ 315 (391)
T PRK07588 279 GRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELAR 315 (391)
T ss_pred CCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHh
Confidence 6899999999877774 778888888777776653
No 231
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=22.73 E-value=1.7e+02 Score=26.16 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=16.4
Q ss_pred CCCCCCCC-CCCEEEccccccCCCCCcHHHH
Q 033121 50 FRPDQKTQ-VKNLFLAGSYTKQDYIDIMEGA 79 (126)
Q Consensus 50 ~rp~~~tp-~~~L~lAGd~t~~~~patmeGA 79 (126)
+.|.+.|. +++||||| .-+.-.|+=|.|
T Consensus 379 lk~sLeTkkV~GLF~AG--QINGTTGYEEAA 407 (679)
T KOG2311|consen 379 LKPSLETKKVQGLFFAG--QINGTTGYEEAA 407 (679)
T ss_pred cchhhhhhhccceEEee--eecCccchHHHH
Confidence 34555554 68999999 333334454544
No 232
>PRK06834 hypothetical protein; Provisional
Probab=20.25 E-value=1.2e+02 Score=25.68 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=18.0
Q ss_pred CCEEEccccccCCCCC---cHHHHHHHH
Q 033121 59 KNLFLAGSYTKQDYID---IMEGASLSG 83 (126)
Q Consensus 59 ~~L~lAGd~t~~~~pa---tmeGAv~SG 83 (126)
++++|+||.-+...|- .||-+++-+
T Consensus 265 gRV~LaGDAAH~~~P~gGQG~N~gi~DA 292 (488)
T PRK06834 265 GRVLLAGDAAHVHSPVGGQGLNTGVQDA 292 (488)
T ss_pred CcEEEEeeccccCCccccccccccHHHH
Confidence 7999999999887774 454444443
Done!