BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033124
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEZ|A Chain A, Crystal Structure Of Methionine-R-Sulfoxide Reductase From
Burkholderia Pseudomallei
pdb|3CEZ|B Chain B, Crystal Structure Of Methionine-R-Sulfoxide Reductase From
Burkholderia Pseudomallei
pdb|3CXK|A Chain A, 1.7 A Crystal Structure Of Methionine-R-Sulfoxide
Reductase From Burkholderia Pseudomallei:
Crystallization In A Microfluidic Crystal Card.
pdb|3CXK|B Chain B, 1.7 A Crystal Structure Of Methionine-R-Sulfoxide
Reductase From Burkholderia Pseudomallei:
Crystallization In A Microfluidic Crystal Card
Length = 164
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Query: 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
A IY C CGT L + Y + +P+ F ID E +
Sbjct: 71 AGIYHCVVCGTAL-FESGAKYHSGCGWPS------YFKPIDGEVID-----------EKM 112
Query: 62 DY-WGIQRKRTKIKCNNCGALLGYIYDDGP 90
DY G+ R +++CN CGA LG++++DGP
Sbjct: 113 DYTHGM--TRVEVRCNQCGAHLGHVFEDGP 140
>pdb|2K8D|A Chain A, Solution Structure Of A Zinc-Binding Methionine Sulfoxide
Reductase
Length = 151
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
IY C CGT+L + + F +G + ++ +L +ED+
Sbjct: 61 IYRCICCGTDL-------FDSETKFDSGTGWPSFYDVVSEHNIKL-REDR---------- 102
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
+ R ++ C C A LG+++DDGP
Sbjct: 103 -SLGMVRCEVLCARCDAHLGHVFDDGP 128
>pdb|3HCI|A Chain A, Structure Of Msrb From Xanthomonas Campestris
(Complex-Like Form)
pdb|3HCI|B Chain B, Structure Of Msrb From Xanthomonas Campestris
(Complex-Like Form)
Length = 154
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 19/91 (20%)
Query: 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFET 60
+ +Y+C+ CG L + + F +G FA D R ++
Sbjct: 47 LDGVYTCRLCGLPL-------FRSNAKFDSGTGWPSFFAPYDPAHVREIRDTS------- 92
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGPP 91
+G+ RT+I C C + LG+++ DGPP
Sbjct: 93 ---YGM--VRTEIVCARCDSHLGHVFPDGPP 118
>pdb|3HCJ|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Oxidized
Form)
pdb|3HCJ|B Chain B, Structure Of Msrb From Xanthomonas Campestris (Oxidized
Form)
Length = 154
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 19/91 (20%)
Query: 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFET 60
+ +Y+C+ CG L + + F +G FA D R +IR
Sbjct: 47 LDGVYTCRLCGLPL-------FRSNAKFDSGTGWPSFFAPYDPAHVR-----EIR----D 90
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGPP 91
Y I RT+I C C + LG+++ DGPP
Sbjct: 91 TSYGMI---RTEIVCARCDSHLGHVFPDGPP 118
>pdb|2L1U|A Chain A, Structure-Functional Analysis Of Mammalian Msrb2 Protein
Length = 143
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R ++ C C A LG+++ DGP
Sbjct: 91 RMEVVCKQCEAHLGHVFPDGP 111
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 42 DSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVD 94
D T FRL +R E +++ GI+R R K+ + L+ Y+ D G +D
Sbjct: 279 DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEAD---LILYLLDLGTERLD 328
>pdb|2FE7|A Chain A, The Crystal Structure Of A Probable N-Acetyltransferase
From Pseudomonas Aeruginosa
pdb|2FE7|B Chain B, The Crystal Structure Of A Probable N-Acetyltransferase
From Pseudomonas Aeruginosa
Length = 166
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 75 CNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRISTE 125
N+CG L + D PA+D P + RYRL +ALR E
Sbjct: 119 ANDCGRLEWSVLDWNQPAIDFYRSIGALPQD---EWVRYRLDGEALRKMAE 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,035,362
Number of Sequences: 62578
Number of extensions: 160448
Number of successful extensions: 223
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 8
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)