BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033124
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STN5|Y4833_ARATH Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis
thaliana GN=At4g08330 PE=1 SV=1
Length = 164
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 5 YSCKECGTNLNLNTSHLYPATV---YFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
YSC CG LNL++++ +T+ Y + G +SF ID +F E + P F
Sbjct: 38 YSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPHFSRY 97
Query: 62 DYWGIQRKRTKIKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR 121
WG+ R RTK+ C C +G + P Q S I +Y ++ ++L+
Sbjct: 98 S-WGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSPRIGSVTKYDIRIRSLQ 156
Query: 122 IST 124
S+
Sbjct: 157 PSS 159
>sp|Q9CMB1|MSRB_PASMU Peptide methionine sulfoxide reductase MsrB OS=Pasteurella
multocida (strain Pm70) GN=msrB PE=3 SV=1
Length = 130
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGPP 91
LD + + R RT+I+C C A LG++++DGPP
Sbjct: 74 LDDYTLSRPRTEIRCGQCDAHLGHVFEDGPP 104
>sp|Q8PWF5|MSRB_METMA Peptide methionine sulfoxide reductase MsrB OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=msrB PE=3 SV=1
Length = 140
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
IY+C CG L+ + F +G + +I S + RL +++ +F
Sbjct: 46 IYTCAACG-------QELFSSDTKFESGTGWPSFYDVISSDRVRLHEDN---SYF----- 90
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
KR ++ C+ CG+ LG++++DGP
Sbjct: 91 ----MKRIEVVCSRCGSHLGHVFEDGP 113
>sp|Q63V23|MSRB_BURPS Peptide methionine sulfoxide reductase MsrB OS=Burkholderia
pseudomallei (strain K96243) GN=msrB PE=3 SV=1
Length = 143
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 21/90 (23%)
Query: 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
A IY C CGT L + + F +G F ID E +
Sbjct: 50 AGIYHCVVCGTAL-------FESGAKFHSGCGWPSYFKPIDGEVID-----------EKM 91
Query: 62 DY-WGIQRKRTKIKCNNCGALLGYIYDDGP 90
DY G+ R +++CN CGA LG++++DGP
Sbjct: 92 DYTHGMTR--VEVRCNQCGAHLGHVFEDGP 119
>sp|A1V4U8|MSRB_BURMS Peptide methionine sulfoxide reductase MsrB OS=Burkholderia mallei
(strain SAVP1) GN=msrB PE=3 SV=1
Length = 143
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 21/90 (23%)
Query: 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
A IY C CGT L + + F +G F ID E +
Sbjct: 50 AGIYHCVVCGTAL-------FESGAKFHSGCGWPSYFKPIDGEVID-----------EKM 91
Query: 62 DY-WGIQRKRTKIKCNNCGALLGYIYDDGP 90
DY G+ R +++CN CGA LG++++DGP
Sbjct: 92 DYTHGMTR--VEVRCNQCGAHLGHVFEDGP 119
>sp|Q62JM6|MSRB_BURMA Peptide methionine sulfoxide reductase MsrB OS=Burkholderia mallei
(strain ATCC 23344) GN=msrB PE=3 SV=1
Length = 143
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 21/90 (23%)
Query: 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
A IY C CGT L + + F +G F ID E +
Sbjct: 50 AGIYHCVVCGTAL-------FESGAKFHSGCGWPSYFKPIDGEVID-----------EKM 91
Query: 62 DY-WGIQRKRTKIKCNNCGALLGYIYDDGP 90
DY G+ R +++CN CGA LG++++DGP
Sbjct: 92 DYTHGMTR--VEVRCNQCGAHLGHVFEDGP 119
>sp|A2SBI6|MSRB_BURM9 Peptide methionine sulfoxide reductase MsrB OS=Burkholderia mallei
(strain NCTC 10229) GN=msrB PE=3 SV=1
Length = 143
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 21/90 (23%)
Query: 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
A IY C CGT L + + F +G F ID E +
Sbjct: 50 AGIYHCVVCGTAL-------FESGAKFHSGCGWPSYFKPIDGEVID-----------EKM 91
Query: 62 DY-WGIQRKRTKIKCNNCGALLGYIYDDGP 90
DY G+ R +++CN CGA LG++++DGP
Sbjct: 92 DYTHGMTR--VEVRCNQCGAHLGHVFEDGP 119
>sp|A0K833|MSRB_BURCH Peptide methionine sulfoxide reductase MsrB OS=Burkholderia
cenocepacia (strain HI2424) GN=msrB PE=3 SV=1
Length = 143
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 19/21 (90%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R +++CNNCGA LG++++DGP
Sbjct: 99 RVEVRCNNCGAHLGHVFEDGP 119
>sp|Q1BH71|MSRB_BURCA Peptide methionine sulfoxide reductase MsrB OS=Burkholderia
cenocepacia (strain AU 1054) GN=msrB PE=3 SV=1
Length = 143
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 19/21 (90%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R +++CNNCGA LG++++DGP
Sbjct: 99 RVEVRCNNCGAHLGHVFEDGP 119
>sp|Q46EH1|MSRB_METBF Peptide methionine sulfoxide reductase MsrB OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=msrB PE=3 SV=1
Length = 142
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
+Y+C CG L+ + F +G + +I S + RL KED +F
Sbjct: 46 VYTCAACG-------QELFSSDTKFESGTGWPSFYDVISSDRVRL-KEDT--SYF----- 90
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
R ++ C+ CG+ LG++++DGP
Sbjct: 91 ----MNRIEVVCSRCGSHLGHVFEDGP 113
>sp|Q2SWN9|MSRB_BURTA Peptide methionine sulfoxide reductase MsrB OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=msrB PE=3 SV=1
Length = 143
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Query: 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
A IY C CGT L + + + +G F ID+ E +
Sbjct: 50 AGIYHCVVCGTAL-------FESGAKYHSGCGWPSYFKPIDAEVID-----------EKM 91
Query: 62 DY-WGIQRKRTKIKCNNCGALLGYIYDDGP 90
DY G+ R +++CN CGA LG++++DGP
Sbjct: 92 DYTHGMTR--VEVRCNQCGAHLGHVFEDGP 119
>sp|Q3JRF0|MSRB_BURP1 Peptide methionine sulfoxide reductase MsrB OS=Burkholderia
pseudomallei (strain 1710b) GN=msrB PE=1 SV=1
Length = 143
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
Query: 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
A IY C CGT L + Y + +P+ F ID E +
Sbjct: 50 AGIYHCVVCGTAL-FESGAKYHSGCGWPS------YFKPIDGEVID-----------EKM 91
Query: 62 DY-WGIQRKRTKIKCNNCGALLGYIYDDGP 90
DY G+ R +++CN CGA LG++++DGP
Sbjct: 92 DYTHGM--TRVEVRCNQCGAHLGHVFEDGP 119
>sp|Q8INK9|MSRB_DROME Methionine-R-sulfoxide reductase B1 OS=Drosophila melanogaster
GN=SelR PE=1 SV=3
Length = 208
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
+Y C C +L ++ Y + +PA N ++D K L ++ I L
Sbjct: 90 VYQCIVCHQDL-FSSETKYDSGCGWPAFND------VLDKGKVTLHRDASIPGGNILLLI 142
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
+R RT+++C C A +G++++DGP
Sbjct: 143 AHPERIRTEVRCARCNAHMGHVFEDGP 169
>sp|Q8UGX7|MSRB_AGRT5 Peptide methionine sulfoxide reductase MsrB OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=msrB PE=3 SV=1
Length = 135
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 70 RTKIKCNNCGALLGYIYDDGPP 91
RT+I+C NCG LG+++ DGPP
Sbjct: 96 RTEIRCANCGGHLGHVFPDGPP 117
>sp|Q47EU6|MSRB_DECAR Peptide methionine sulfoxide reductase MsrB OS=Dechloromonas
aromatica (strain RCB) GN=msrB PE=3 SV=1
Length = 132
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 19/21 (90%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
RT++ C++CGA LG+++DDGP
Sbjct: 91 RTEVTCHDCGAHLGHVFDDGP 111
>sp|B1YRN6|MSRB_BURA4 Peptide methionine sulfoxide reductase MsrB OS=Burkholderia
ambifaria (strain MC40-6) GN=msrB PE=3 SV=1
Length = 143
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R +++CN+CGA LG++++DGP
Sbjct: 99 RVEVRCNHCGAHLGHVFEDGP 119
>sp|B1JTT6|MSRB_BURCC Peptide methionine sulfoxide reductase MsrB OS=Burkholderia
cenocepacia (strain MC0-3) GN=msrB PE=3 SV=1
Length = 143
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R +++CN+CGA LG++++DGP
Sbjct: 99 RVEVRCNHCGAHLGHVFEDGP 119
>sp|B4EBK9|MSRB_BURCJ Peptide methionine sulfoxide reductase MsrB OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=msrB PE=3 SV=1
Length = 143
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R +++CN+CGA LG++++DGP
Sbjct: 99 RVEVRCNHCGAHLGHVFEDGP 119
>sp|A4JEZ1|MSRB_BURVG Peptide methionine sulfoxide reductase MsrB OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=msrB PE=3 SV=1
Length = 143
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R +++CN+CGA LG++++DGP
Sbjct: 99 RVEVRCNHCGAHLGHVFEDGP 119
>sp|Q39FG2|MSRB_BURS3 Peptide methionine sulfoxide reductase MsrB OS=Burkholderia sp.
(strain 383) GN=msrB PE=3 SV=1
Length = 143
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R +++CN+CGA LG++++DGP
Sbjct: 99 RVEVRCNHCGAHLGHVFEDGP 119
>sp|Q0BEH0|MSRB_BURCM Peptide methionine sulfoxide reductase MsrB OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=msrB PE=3 SV=1
Length = 143
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R +++CN+CGA LG++++DGP
Sbjct: 99 RVEVRCNHCGAHLGHVFEDGP 119
>sp|Q8BU85|MSRB3_MOUSE Methionine-R-sulfoxide reductase B3, mitochondrial OS=Mus musculus
GN=Msrb3 PE=1 SV=2
Length = 253
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
IY C CGT L + + F +G+ G +F + S++ E D
Sbjct: 143 IYKCVVCGTPL-------FKSETKFDSGS-GWPAFHDVISSEA-----------IEFTDD 183
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
+ R + C+ CGA LG+I+DDGP
Sbjct: 184 FSYGMHRVETSCSQCGAHLGHIFDDGP 210
>sp|Q8XYL1|MSRB_RALSO Peptide methionine sulfoxide reductase MsrB OS=Ralstonia
solanacearum (strain GMI1000) GN=msrB PE=3 SV=1
Length = 128
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
IY C CGT L + ++ F AG FA I+ + EK D
Sbjct: 43 IYHCVCCGTPL-------FESSTKFDAGCGWPSYFAPING-EVIAEKTDHSHGMV----- 89
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
R +++C CGA LG++++DGP
Sbjct: 90 ------RIEVQCKQCGAHLGHVFEDGP 110
>sp|A9AJS6|MSRB_BURM1 Peptide methionine sulfoxide reductase MsrB OS=Burkholderia
multivorans (strain ATCC 17616 / 249) GN=msrB PE=3 SV=1
Length = 143
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R +++CN+CGA LG++++DGP
Sbjct: 99 RVEVRCNHCGAHLGHVFEDGP 119
>sp|Q5R930|MSRB3_PONAB Methionine-R-sulfoxide reductase B3 OS=Pongo abelii GN=MSRB3 PE=2
SV=2
Length = 190
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
IY C CGT L + + F +G+ G SF + S++ F + Y
Sbjct: 81 IYKCVVCGTPL-------FKSETKFDSGS-GWPSFHDVISSE--------AITFTDDFSY 124
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
G+ R T C+ CGA LG+I+DDGP
Sbjct: 125 -GMHRVETS--CSQCGAHLGHIFDDGP 148
>sp|Q8IXL7|MSRB3_HUMAN Methionine-R-sulfoxide reductase B3 OS=Homo sapiens GN=MSRB3 PE=1
SV=2
Length = 192
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 21/88 (23%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
IY C CGT L + + F +G+ +I+S T D+
Sbjct: 83 IYKCVVCGTPL-------FKSETKFDSGSGWPSFHDVINSEAITF-----------TDDF 124
Query: 64 -WGIQRKRTKIKCNNCGALLGYIYDDGP 90
+G+ R T C+ CGA LG+I+DDGP
Sbjct: 125 SYGMHRVETS--CSQCGAHLGHIFDDGP 150
>sp|A4G5V5|MSRB_HERAR Peptide methionine sulfoxide reductase MsrB OS=Herminiimonas
arsenicoxydans GN=msrB PE=3 SV=1
Length = 137
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 70 RTKIKCNNCGALLGYIYDDGPP 91
RT++ CN C A LG++++DGPP
Sbjct: 92 RTEVICNVCDAHLGHVFNDGPP 113
>sp|Q9I016|MSRB_PSEAE Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=msrB PE=3 SV=1
Length = 132
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
IY C CGT L + + + +G+ F +D+ R LD
Sbjct: 44 IYHCTCCGTAL-------FDSDAKYDSGSGWPSYFQPVDAEAVR------------ELDD 84
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
+ R +++C C A LG+++ DGP
Sbjct: 85 FSHGMHRIEVRCGRCDAHLGHVFPDGP 111
>sp|Q02NZ0|MSRB_PSEAB Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=msrB PE=3 SV=1
Length = 132
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
IY C CGT L + + + +G+ F +D+ R LD
Sbjct: 44 IYHCTCCGTAL-------FDSDAKYDSGSGWPSYFQPVDAEAVR------------ELDD 84
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
+ R +++C C A LG+++ DGP
Sbjct: 85 FSHGMHRIEVRCGRCDAHLGHVFPDGP 111
>sp|B7UUZ9|MSRB_PSEA8 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas
aeruginosa (strain LESB58) GN=msrB PE=3 SV=1
Length = 132
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
IY C CGT L + + + +G+ F +D+ R LD
Sbjct: 44 IYHCTCCGTAL-------FDSDAKYDSGSGWPSYFQPVDAEAVR------------ELDD 84
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
+ R +++C C A LG+++ DGP
Sbjct: 85 FSHGMHRIEVRCGRCDAHLGHVFPDGP 111
>sp|Q8DJK9|MSRB_THEEB Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus
elongatus (strain BP-1) GN=msrB PE=3 SV=1
Length = 135
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
+YSC CGT L + + + +G + +D R+E++ L +
Sbjct: 44 LYSCVCCGTPL-------FRSETKYDSGTGWPSFWQPLDPNNIRMERD---------LSH 87
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGPP 91
+ RT++ C C A LG++++DGPP
Sbjct: 88 GMV---RTEVLCAVCDAHLGHVFEDGPP 112
>sp|Q92RA4|MSRB1_RHIME Peptide methionine sulfoxide reductase MsrB 1 OS=Rhizobium meliloti
(strain 1021) GN=msrB1 PE=3 SV=2
Length = 135
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 70 RTKIKCNNCGALLGYIYDDGPP 91
RT+I+C +C A LG+++ DGPP
Sbjct: 96 RTEIRCADCDAHLGHVFPDGPP 117
>sp|Q6ADJ8|MSRB_LEIXX Peptide methionine sulfoxide reductase MsrB OS=Leifsonia xyli
subsp. xyli (strain CTCB07) GN=msrB PE=3 SV=1
Length = 139
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRP-FFET 60
A +Y+C CG + L+ + F +G G SF + +RP E
Sbjct: 48 AGVYACAACG-------AELFRSGTKFDSGC-GWPSFY------------ESVRPEAVEL 87
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDG 89
L+ + RT+++C NCG+ LG+++ DG
Sbjct: 88 LEDTRLGITRTEVRCANCGSHLGHVFPDG 116
>sp|Q3K935|MSRB_PSEPF Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=msrB PE=3 SV=1
Length = 131
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 70 RTKIKCNNCGALLGYIYDDGPP 91
RT++KC C A LG+++ DGPP
Sbjct: 91 RTEVKCAKCDAHLGHVFPDGPP 112
>sp|O26807|MSRB_METTH Peptide methionine sulfoxide reductase MsrB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=msrB PE=1 SV=1
Length = 151
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
IY C CGT+L + + F +G + ++ +L +ED+
Sbjct: 61 IYRCICCGTDL-------FDSETKFDSGTGWPSFYDVVSEHNIKL-REDR---------- 102
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
+ R ++ C C A LG+++DDGP
Sbjct: 103 -SLGMVRCEVLCARCDAHLGHVFDDGP 128
>sp|B0BYW4|MSRB_ACAM1 Peptide methionine sulfoxide reductase MsrB OS=Acaryochloris marina
(strain MBIC 11017) GN=msrB PE=3 SV=1
Length = 131
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETL 61
A Y C CGT L + + F +G +A D T EK D R F
Sbjct: 42 AGTYQCVCCGTEL-------FTSDTKFDSGTGWPSFWAPADKTHVE-EKTD--RSLFMV- 90
Query: 62 DYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
RT++ C C A LG++++DGP
Sbjct: 91 --------RTEVLCAVCDAHLGHVFNDGP 111
>sp|Q2SJP9|MSRB_HAHCH Peptide methionine sulfoxide reductase MsrB OS=Hahella chejuensis
(strain KCTC 2396) GN=msrB PE=3 SV=1
Length = 139
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
RT+I C+ C A LG+++DDGP
Sbjct: 91 RTEILCSKCDAHLGHVFDDGP 111
>sp|A2SGN7|MSRB_METPP Peptide methionine sulfoxide reductase MsrB OS=Methylibium
petroleiphilum (strain PM1) GN=msrB PE=3 SV=1
Length = 138
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
R +++C +CGA LG+++ DGP
Sbjct: 98 RVEVRCQDCGAHLGHVFPDGP 118
>sp|B5F860|MSRB_SALA4 Peptide methionine sulfoxide reductase MsrB OS=Salmonella agona
(strain SL483) GN=msrB PE=3 SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
+D + +R +I+C NC A LG+++ DGP
Sbjct: 81 IDDFSHGMQRVEIRCGNCDAHLGHVFPDGP 110
>sp|P65449|MSRB_SALTY Peptide methionine sulfoxide reductase MsrB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=msrB PE=3 SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
+D + +R +I+C NC A LG+++ DGP
Sbjct: 81 IDDFSHGMQRVEIRCGNCDAHLGHVFPDGP 110
>sp|P65450|MSRB_SALTI Peptide methionine sulfoxide reductase MsrB OS=Salmonella typhi
GN=msrB PE=3 SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
+D + +R +I+C NC A LG+++ DGP
Sbjct: 81 IDDFSHGMQRVEIRCGNCDAHLGHVFPDGP 110
>sp|B4TUA8|MSRB_SALSV Peptide methionine sulfoxide reductase MsrB OS=Salmonella
schwarzengrund (strain CVM19633) GN=msrB PE=3 SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
+D + +R +I+C NC A LG+++ DGP
Sbjct: 81 IDDFSHGMQRVEIRCGNCDAHLGHVFPDGP 110
>sp|A9N292|MSRB_SALPB Peptide methionine sulfoxide reductase MsrB OS=Salmonella paratyphi
B (strain ATCC BAA-1250 / SPB7) GN=msrB PE=3 SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
+D + +R +I+C NC A LG+++ DGP
Sbjct: 81 IDDFSHGMQRVEIRCGNCDAHLGHVFPDGP 110
>sp|B4T3Y1|MSRB_SALNS Peptide methionine sulfoxide reductase MsrB OS=Salmonella newport
(strain SL254) GN=msrB PE=3 SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
+D + +R +I+C NC A LG+++ DGP
Sbjct: 81 IDDFSHGMQRVEIRCGNCDAHLGHVFPDGP 110
>sp|B4TGC8|MSRB_SALHS Peptide methionine sulfoxide reductase MsrB OS=Salmonella
heidelberg (strain SL476) GN=msrB PE=3 SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
+D + +R +I+C NC A LG+++ DGP
Sbjct: 81 IDDFSHGMQRVEIRCGNCDAHLGHVFPDGP 110
>sp|B5FJF9|MSRB_SALDC Peptide methionine sulfoxide reductase MsrB OS=Salmonella dublin
(strain CT_02021853) GN=msrB PE=3 SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
+D + +R +I+C NC A LG+++ DGP
Sbjct: 81 IDDFSHGMQRVEIRCGNCDAHLGHVFPDGP 110
>sp|A9MFH4|MSRB_SALAR Peptide methionine sulfoxide reductase MsrB OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrB PE=3
SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 61 LDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
+D + +R +I+C NC A LG+++ DGP
Sbjct: 81 IDDFSHGMQRVEIRCGNCDAHLGHVFPDGP 110
>sp|A6V3R3|MSRB_PSEA7 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas
aeruginosa (strain PA7) GN=msrB PE=3 SV=1
Length = 132
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 19/87 (21%)
Query: 4 IYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAMIDSTKFRLEKEDKIRPFFETLDY 63
+Y C CGT L + + + +G+ F +D R LD
Sbjct: 44 VYHCTCCGTAL-------FDSDAKYDSGSGWPSYFQPVDGEAVR------------ELDD 84
Query: 64 WGIQRKRTKIKCNNCGALLGYIYDDGP 90
+ R +++C C A LG+++ DGP
Sbjct: 85 FSHGMHRIEVRCGRCDAHLGHVFPDGP 111
>sp|Q32GC7|MSRB_SHIDS Peptide methionine sulfoxide reductase MsrB OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=msrB PE=3 SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 51 EDKIRPFFETLDYWGIQRKRTKIKCNNCGALLGYIYDDGP 90
E+ IR + + L + G+QR +I+C NC A LG+++ DGP
Sbjct: 75 EESIR-YIKDLSH-GVQR--IEIRCGNCDAHLGHVFPDGP 110
>sp|Q12AE4|MSRB_POLSJ Peptide methionine sulfoxide reductase MsrB OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=msrB PE=3 SV=1
Length = 136
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 70 RTKIKCNNCGALLGYIYDDGP 90
RT+ C NCGA LG+++ DGP
Sbjct: 97 RTETVCANCGAHLGHVFPDGP 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,856,319
Number of Sequences: 539616
Number of extensions: 2004951
Number of successful extensions: 5312
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 5166
Number of HSP's gapped (non-prelim): 191
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)