Query 033124
Match_columns 126
No_of_seqs 119 out of 1020
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 16:33:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0o_A Peptide methionine sulf 100.0 8.7E-41 3E-45 252.5 7.7 84 1-121 39-123 (144)
2 3mao_A Methionine-R-sulfoxide 100.0 8.9E-41 3E-45 241.3 6.7 84 1-121 10-95 (105)
3 3hcj_A MSRB, peptide methionin 100.0 7E-41 2.4E-45 255.3 6.0 86 1-122 47-133 (154)
4 2k8d_A Peptide methionine sulf 100.0 7.3E-41 2.5E-45 254.5 4.2 86 1-122 58-144 (151)
5 2l1u_A MSRB2, methionine-R-sul 100.0 2.4E-40 8.2E-45 249.8 6.1 86 1-122 34-127 (143)
6 2kv1_A Methionine-R-sulfoxide 100.0 7.8E-40 2.7E-44 242.2 8.6 84 1-121 17-102 (124)
7 3hcg_A Peptide methionine sulf 100.0 1.6E-40 5.6E-45 251.4 4.7 85 1-121 40-126 (146)
8 2kao_A Methionine-R-sulfoxide 100.0 1.1E-39 3.9E-44 241.3 8.5 85 1-122 17-103 (124)
9 3cxk_A Methionine-R-sulfoxide 100.0 7.9E-40 2.7E-44 251.6 6.6 86 1-122 70-157 (164)
10 3e0m_A Peptide methionine sulf 100.0 5.9E-37 2E-41 254.6 6.2 86 1-122 206-293 (313)
11 1dl6_A Transcription factor II 74.8 1.8 6.3E-05 27.0 2.3 28 2-39 28-55 (58)
12 1pft_A TFIIB, PFTFIIBN; N-term 73.4 3.2 0.00011 24.5 3.1 28 2-39 22-49 (50)
13 2apo_B Ribosome biogenesis pro 65.7 3.3 0.00011 26.6 2.0 23 7-29 21-43 (60)
14 3h0g_I DNA-directed RNA polyme 57.8 2.4 8.1E-05 29.6 0.2 19 69-87 69-87 (113)
15 3fac_A Putative uncharacterize 46.7 17 0.00059 24.6 3.2 20 70-89 65-84 (118)
16 1twf_I B12.6, DNA-directed RNA 46.0 3.2 0.00011 29.3 -0.7 19 68-86 68-86 (122)
17 2aus_D NOP10, ribosome biogene 45.2 8.3 0.00029 24.7 1.3 22 7-28 20-41 (60)
18 1x6m_A GFA, glutathione-depend 44.6 32 0.0011 25.5 4.7 21 69-89 95-115 (196)
19 4ayb_P DNA-directed RNA polyme 35.4 17 0.00057 22.5 1.5 12 3-14 2-13 (48)
20 3qt1_I DNA-directed RNA polyme 34.5 7.8 0.00027 28.0 -0.2 18 69-86 89-106 (133)
21 2lo3_A SAGA-associated factor 32.0 14 0.00047 22.5 0.7 11 6-16 19-29 (44)
22 1qyp_A RNA polymerase II; tran 29.7 18 0.00062 21.8 1.0 16 69-84 12-27 (57)
23 1vq8_1 50S ribosomal protein L 26.2 20 0.00068 22.9 0.7 17 69-85 14-30 (57)
24 2m0f_A Zinc finger and BTB dom 24.0 25 0.00086 16.0 0.7 12 3-14 1-12 (29)
25 3h0g_L DNA-directed RNA polyme 23.2 22 0.00076 22.8 0.5 14 3-16 20-33 (63)
26 3k7a_M Transcription initiatio 21.8 30 0.001 27.8 1.2 28 2-39 40-67 (345)
27 3k1f_M Transcription initiatio 21.1 17 0.00058 28.3 -0.4 29 2-40 40-68 (197)
28 6rxn_A Rubredoxin; electron tr 20.5 32 0.0011 20.6 0.8 11 4-14 4-14 (46)
29 1dxg_A Desulforedoxin; non-hem 20.0 39 0.0013 18.8 1.1 12 3-14 5-16 (36)
No 1
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=100.00 E-value=8.7e-41 Score=252.49 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=79.1
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG 79 (126)
Q Consensus 1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg 79 (126)
.+|+|+|++||+|| |+|++||+||| |||||+ +|++ +|+.+.|.++ +|.||||+|++||
T Consensus 39 ~~G~Y~C~~Cg~pL-------F~S~~KfdSg~-GWPSF~~pi~~-~v~~~~D~s~------------gm~RtEV~C~~Cg 97 (144)
T 3e0o_A 39 EEGLYVDIVSGKPL-------FTSKDKFDSQC-GWPSFTKPIEE-EVEEKLDTSH------------GMIRTEVRSRTAD 97 (144)
T ss_dssp CSEEEEETTTCCEE-------EETTTBCCCTT-SSCEESCCSTT-TEEEEEECCT------------TSCEEEEEETTTC
T ss_pred CCEEEEeCCCCccc-------ccCcccccCCC-CCcccCchhcc-ceEEeecCCC------------CceEEEEEcCCCC
Confidence 37999999999999 99999999999 999999 8977 9999999887 7799999999999
Q ss_pred CccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124 80 ALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR 121 (126)
Q Consensus 80 ~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~ 121 (126)
+||||||+|||+||| +|||||++||+
T Consensus 98 ~HLGHVF~DGP~ptg----------------~RyCiNS~sL~ 123 (144)
T 3e0o_A 98 SHLGHVFNDGPGPNG----------------LRYCINSAALR 123 (144)
T ss_dssp CEEEEEESCCSSTTC----------------CEEEECGGGEE
T ss_pred CccCCccCCCCCCCC----------------CEeeeceeeEe
Confidence 999999999998876 79999999997
No 2
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=100.00 E-value=8.9e-41 Score=241.33 Aligned_cols=84 Identities=23% Similarity=0.559 Sum_probs=77.3
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG 79 (126)
Q Consensus 1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg 79 (126)
.+|+|+|++||+|| |+|++||+||| |||||+ +|++++|+..+|.+ .|.||||+|++||
T Consensus 10 ~~G~Y~C~~Cg~pL-------F~S~~KFdSg~-GWPSF~~pi~~~~v~~~~D~~-------------~~~RtEV~C~~C~ 68 (105)
T 3mao_A 10 EPGVYVCAKCGYEL-------FSSRSKYAHSS-PWPAFTETIHADSVAKRPEHN-------------RSEALKVSCGKCG 68 (105)
T ss_dssp CSEEEEETTTCCEE-------EEGGGEECCSS-SSCEESCCSSTTSEEEEECTT-------------STTEEEEEETTTC
T ss_pred CCEEEEcCCCCCcc-------ccCCcccCCCC-CChhhccccCCCceEEEecCC-------------CCCEEEEEeCCCC
Confidence 37999999999999 99999999999 999999 89889999888754 3479999999999
Q ss_pred Ccccccc-CCCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124 80 ALLGYIY-DDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR 121 (126)
Q Consensus 80 ~HLGhvF-~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~ 121 (126)
+|||||| +|||+||| +|||||++||+
T Consensus 69 ~HLGHVF~~DGP~ptg----------------~RyCiNS~sL~ 95 (105)
T 3mao_A 69 NGLGHEFLNDGPKPGQ----------------SRFSIFSSSLK 95 (105)
T ss_dssp CEEEEEETTCSSSTTC----------------CEEEECGGGEE
T ss_pred CccCcccCCCCcCCCC----------------CEEeeCeeeEE
Confidence 9999999 79998876 79999999997
No 3
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=100.00 E-value=7e-41 Score=255.27 Aligned_cols=86 Identities=30% Similarity=0.624 Sum_probs=80.9
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG 79 (126)
Q Consensus 1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg 79 (126)
.+|+|+|++||+|| |+|++||+||| |||||+ +|++++|+.+.|.++ +|.||||+|++||
T Consensus 47 ~~G~Y~C~~Cg~pL-------F~S~~KFdSg~-GWPSF~~pi~~~~v~~~~D~s~------------gm~RtEV~C~~Cg 106 (154)
T 3hcj_A 47 LDGVYTCRLCGLPL-------FRSNAKFDSGT-GWPSFFAPYDPAHVREIRDTSY------------GMIRTEIVCARCD 106 (154)
T ss_dssp SSEEEEETTTCCEE-------EEECTTCCCCT-TSSTTEEESCGGGEEEECCTTT------------TTSCEEEEETTTC
T ss_pred CCEEEEccCCCCcc-------ccCcccccCCC-CCcccccccCccceEEeecCCC------------CceEEEEEeCCCC
Confidence 36999999999999 99999999999 999999 998889999999887 7799999999999
Q ss_pred CccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124 80 ALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI 122 (126)
Q Consensus 80 ~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p 122 (126)
+||||||+|||+||| +|||||++||+=
T Consensus 107 ~HLGHVF~DGP~ptg----------------~RyCiNS~sL~F 133 (154)
T 3hcj_A 107 SHLGHVFPDGPPPTG----------------ERHCLNSVSLAF 133 (154)
T ss_dssp CEEEEEESCSCTTTT----------------CEEEECGGGEEE
T ss_pred CccCCccCCCCCCCC----------------CEeeeceeeEEe
Confidence 999999999998886 799999999973
No 4
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=7.3e-41 Score=254.54 Aligned_cols=86 Identities=31% Similarity=0.689 Sum_probs=80.9
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG 79 (126)
Q Consensus 1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg 79 (126)
.+|+|+|++||+|| |+|++||+||| |||||+ +|++++|+.+.|.++ +|.||||+|++||
T Consensus 58 ~~G~Y~C~~Cg~pL-------F~S~~KFdSg~-GWPSF~~pi~~~~V~~~~D~s~------------gm~RtEV~C~~Cg 117 (151)
T 2k8d_A 58 DDGIYRCICCGTDL-------FDSETKFDSGT-GWPSFYDVVSEHNIKLREDRSL------------GMVRCEVLCARCD 117 (151)
T ss_dssp SCSEEEETTTTEEE-------EEGGGSCCSTT-CCSEESCCSCTTSEECCCCBTT------------SSCEEEEEETTEE
T ss_pred CCEEEEecCCCCcc-------cCCcccccCCC-CCcccCcccCCCceEEeeCCCC------------CceEEEEEeCCCC
Confidence 36999999999999 99999999999 999999 998889999999887 7899999999999
Q ss_pred CccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124 80 ALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI 122 (126)
Q Consensus 80 ~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p 122 (126)
+||||||+|||+||| +|||||++||+=
T Consensus 118 ~HLGHVF~DGP~ptg----------------~RyCINS~sL~F 144 (151)
T 2k8d_A 118 AHLGHVFDDGPRPTG----------------KRYCMNSAALKF 144 (151)
T ss_dssp EEEEEEEECSSSSSC----------------EEEEECSTTEEE
T ss_pred CcCCcccCCCCCCCC----------------CEEeeceeeecc
Confidence 999999999998876 899999999973
No 5
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=100.00 E-value=2.4e-40 Score=249.84 Aligned_cols=86 Identities=24% Similarity=0.540 Sum_probs=80.1
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccC-------CCCeEEeecCCcccccccccccCCCceEEE
Q 033124 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MID-------STKFRLEKEDKIRPFFETLDYWGIQRKRTK 72 (126)
Q Consensus 1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~-------~~~v~~~~d~~~~p~f~~~~s~g~~~~Rte 72 (126)
.+|+|+|++||.|| |+|++||+||| |||||+ +|+ +++|+...|.++ +|.|||
T Consensus 34 ~~G~Y~C~~Cg~pL-------F~S~~KFdSg~-GWPSF~~pi~~~~~~~~~~~V~~~~D~s~------------gm~RtE 93 (143)
T 2l1u_A 34 ETGMYHCVCCDSPL-------FSSEKKYCSGT-GWPSFSEAYGSKGSDESHTGILRRLDTSL------------GCPRME 93 (143)
T ss_dssp CCEEEEESSSSCEE-------EEGGGBCTTTT-CCSBBSSCCSCCTTHHHHTCEEEEEECTT------------SSCEEE
T ss_pred CCeEEEeCCCCCee-------ecCcccccCCC-CChhhchhhccccccCCCCceEEeecccC------------CceEEE
Confidence 37999999999999 99999999999 999999 886 779999999886 779999
Q ss_pred EecCccCCccccccCCCCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124 73 IKCNNCGALLGYIYDDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI 122 (126)
Q Consensus 73 v~C~~Cg~HLGhvF~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p 122 (126)
|+|++||+||||||+|||+||| +|||||++||+=
T Consensus 94 V~C~~Cg~HLGHVF~DGP~ptg----------------~RyCINS~sL~F 127 (143)
T 2l1u_A 94 VVCKQCEAHLGHVFPDGPKPTG----------------QRFCINSVALKF 127 (143)
T ss_dssp EEESSSCCCCEEEECCSSCGGG----------------CEEEECCTTEEE
T ss_pred EEECCCCCcCCcccCCCCCCCC----------------CEEEeeeeEEec
Confidence 9999999999999999998876 799999999973
No 6
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=100.00 E-value=7.8e-40 Score=242.19 Aligned_cols=84 Identities=21% Similarity=0.506 Sum_probs=77.9
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG 79 (126)
Q Consensus 1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg 79 (126)
.+|+|+|++||+|| |+|++||+||| |||||+ +|++++|+.++|.+ +|+||||+|++||
T Consensus 17 e~G~Y~C~~Cg~pL-------F~S~~KfdSg~-GWPSF~~~i~~~~v~~~~d~~-------------~~~r~Ev~C~~Cg 75 (124)
T 2kv1_A 17 EPGVYVCAKCSYEL-------FSSHSKYAHSS-PWPAFTETIHPDSVTKCPEKN-------------RPEALKVSCGKCG 75 (124)
T ss_dssp CCEEEEETTTCCBC-------CCTTSCCCCCS-SSCCBSCCCCCSSCEEEECSS-------------STTCEEEECTTTT
T ss_pred CCEEEEecCCCCcc-------cccCCcccCCC-CCceeecccccceEEEEeccC-------------CceEEEEEEecCC
Confidence 36999999999999 99999999999 999999 99999999888865 4579999999999
Q ss_pred Ccccccc-CCCCCCCCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124 80 ALLGYIY-DDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALR 121 (126)
Q Consensus 80 ~HLGhvF-~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~ 121 (126)
+|||||| +|||+||+ +|||||++||+
T Consensus 76 ~HLGHVF~~DGP~ptg----------------~RyCINS~sL~ 102 (124)
T 2kv1_A 76 NGLGHEFLNDGPKRGQ----------------SRFCIFSSSLK 102 (124)
T ss_dssp CCCEEECTTSCTTTTC----------------SCEECCTTTEE
T ss_pred CccCCccCCCCCCCCC----------------CEEeecceeeE
Confidence 9999999 89999886 79999999997
No 7
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=100.00 E-value=1.6e-40 Score=251.44 Aligned_cols=85 Identities=24% Similarity=0.410 Sum_probs=79.6
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG 79 (126)
Q Consensus 1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg 79 (126)
.+|+|+|++||+|| |+|++||+||| |||||+ +|++++|+.+.|.++ +|.||||+|++||
T Consensus 40 ~~G~Y~C~~Cg~pL-------F~S~~KFdSg~-GWPSF~~pi~~~~v~~~~D~s~------------gm~RtEV~C~~Cg 99 (146)
T 3hcg_A 40 KPGIYVDVVSGEPL-------FSSADKYDSGC-GWPSFTRPIDAKSVTEHDDFSY------------NMRRTEVRSHAAD 99 (146)
T ss_dssp CSEEEEETTTCCEE-------EEGGGEECCSS-SSCEESSCSSGGGEEEEEEEET------------TEEEEEEEETTTC
T ss_pred CCEEEEecCCCccc-------ccCcccccCCC-CChhhccccCCCceEEeecCCC------------CcEEEEEEeCCCC
Confidence 37999999999999 99999999999 999999 998899999999887 7899999999999
Q ss_pred CccccccCCCCCC-CCCCCCcCCCCCCCCCCCceeEeecccee
Q 033124 80 ALLGYIYDDGPPA-VDTPGQFHFGPSQVIPRYPRYRLKTKALR 121 (126)
Q Consensus 80 ~HLGhvF~Dgp~p-t~~~~~~~~~~~~~~~~~~rY~i~~~AL~ 121 (126)
+||||||+|||+| || +|||||++||+
T Consensus 100 ~HLGHVF~DGP~~~tg----------------~RyCiNS~sL~ 126 (146)
T 3hcg_A 100 SHLGHVFPDGPRDKGG----------------LRYCINGASLK 126 (146)
T ss_dssp CEEEEEESCSCGGGTS----------------CEEEECGGGEE
T ss_pred CccCceeCCCCCCCCC----------------CEEeeeeEEEE
Confidence 9999999999974 55 89999999997
No 8
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=100.00 E-value=1.1e-39 Score=241.32 Aligned_cols=85 Identities=21% Similarity=0.504 Sum_probs=77.7
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG 79 (126)
Q Consensus 1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg 79 (126)
.+|+|+|++||+|| |+|++||+||| |||||+ +|++++|+..+|.+ .|.||||+|++||
T Consensus 17 ~~GiY~C~~Cg~pL-------F~S~~KFdSG~-GWPSF~~pi~~~~v~~~~D~~-------------~~~RtEV~C~~Cg 75 (124)
T 2kao_A 17 EPGVYVCAKCSYEL-------FSSHSKYAHSS-PWPAFTETIHPDSVTKCPEKN-------------RPEALKVSCGKCG 75 (124)
T ss_dssp CCCEEEESSSCCCC-------CCTTTSCCCCC-SSCCBSCCCCCSSCEEEECSS-------------CTTCEEEECTTTT
T ss_pred CCEEEEeCCCCCcc-------ccCcccccCCC-CChhhCccCCccceEEEecCC-------------CCCEEEEEeCCCC
Confidence 37999999999999 99999999999 999999 89888999888854 3469999999999
Q ss_pred Ccccccc-CCCCCCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124 80 ALLGYIY-DDGPPAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI 122 (126)
Q Consensus 80 ~HLGhvF-~Dgp~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p 122 (126)
+|||||| +|||+||| +|||||++||+=
T Consensus 76 ~HLGHVF~~DGP~ptg----------------~RyCINS~sL~F 103 (124)
T 2kao_A 76 NGLGHEFLNDGPKRGQ----------------SRFCIFSSSLKF 103 (124)
T ss_dssp CCCEEECCSSCSSSSC----------------CCEECCSSSEEE
T ss_pred CcCCccCCCCCcCCCC----------------CEeeeCeEEEEe
Confidence 9999999 79998876 799999999974
No 9
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=100.00 E-value=7.9e-40 Score=251.58 Aligned_cols=86 Identities=33% Similarity=0.634 Sum_probs=80.4
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG 79 (126)
Q Consensus 1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg 79 (126)
.+|+|+|++||.|| |+|++||+||| |||||+ +|++++|+..+|.++ +|.||||+|++||
T Consensus 70 ~~GiY~C~~Cg~pL-------F~S~~KFdSGc-GWPSF~~pi~~~~V~~~~D~s~------------gm~RtEV~C~~Cg 129 (164)
T 3cxk_A 70 DAGIYHCVVCGTAL-------FESGAKYHSGC-GWPSYFKPIDGEVIDEKMDYTH------------GMTRVEVRCNQCG 129 (164)
T ss_dssp CSEEEEETTTCCEE-------EEGGGBCCCCS-SSCEESSCSSTTSEEEEEECGG------------GCCEEEEEETTTC
T ss_pred CCeEEEccCCCccc-------cCCchhccCCC-CCcccCcccCCCceEEeECCCC------------CcEEEEEEeCCCC
Confidence 36999999999999 99999999999 999999 998889999999886 7799999999999
Q ss_pred CccccccCCCC-CCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124 80 ALLGYIYDDGP-PAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI 122 (126)
Q Consensus 80 ~HLGhvF~Dgp-~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p 122 (126)
+||||||+||| +|+| +|||||++||+=
T Consensus 130 ~HLGHVF~DGP~~ptg----------------~RyCINS~sL~F 157 (164)
T 3cxk_A 130 AHLGHVFEDGPRDKTG----------------LRYCINSAALNF 157 (164)
T ss_dssp CEEEEEESCSCTTTTS----------------CEEEECGGGEEE
T ss_pred CccCcccCCCCCCCCC----------------CEEeeceeeEee
Confidence 99999999999 7776 799999999974
No 10
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=5.9e-37 Score=254.61 Aligned_cols=86 Identities=26% Similarity=0.379 Sum_probs=80.2
Q ss_pred CCcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc-ccCCCCeEEeecCCcccccccccccCCCceEEEEecCccC
Q 033124 1 MASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA-MIDSTKFRLEKEDKIRPFFETLDYWGIQRKRTKIKCNNCG 79 (126)
Q Consensus 1 ~~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~-~i~~~~v~~~~d~~~~p~f~~~~s~g~~~~Rtev~C~~Cg 79 (126)
.+|+|+|++||.|| |+|++||+||| |||||+ +|++++|+.+.|.++ +|.||||+|++||
T Consensus 206 ~~G~Y~c~~cg~pL-------F~S~~KfdSg~-GWPSF~~~i~~~~v~~~~D~s~------------gm~RtEv~c~~c~ 265 (313)
T 3e0m_A 206 EEGIYVDITTGEPL-------FFAKDKFASGC-GWPSFSRPLSKELIHYYKDLSH------------GMERIEVRSRSGS 265 (313)
T ss_dssp CSEEEEETTTCCEE-------EEGGGBCCCCS-SSCEESSCSSGGGEEEEEECCT------------TCCEEEEEESSSC
T ss_pred CCeEEEecCCCccc-------cCCCccccCCC-CCcccCcccCCCceEEeecCCC------------CcEEEEEECCCCC
Confidence 37999999999999 99999999999 999999 998899999999887 7799999999999
Q ss_pred CccccccCCCC-CCCCCCCCcCCCCCCCCCCCceeEeeccceee
Q 033124 80 ALLGYIYDDGP-PAVDTPGQFHFGPSQVIPRYPRYRLKTKALRI 122 (126)
Q Consensus 80 ~HLGhvF~Dgp-~pt~~~~~~~~~~~~~~~~~~rY~i~~~AL~p 122 (126)
+||||||+||| +||| +|||||++||+=
T Consensus 266 ~HLGHVF~DGp~~ptg----------------~RyCiNs~sL~F 293 (313)
T 3e0m_A 266 AHLGHVFTDGPRELGG----------------LRYCINSASLRF 293 (313)
T ss_dssp CEEEEEESCSCTTTTS----------------CEEEECGGGEEE
T ss_pred CccCcccCCCCCCCCC----------------CEEeeceeeEee
Confidence 99999999999 5665 899999999973
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=74.84 E-value=1.8 Score=27.02 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.2
Q ss_pred CcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc
Q 033124 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA 39 (126)
Q Consensus 2 ~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~ 39 (126)
.|.+.|..||.-| .+.-.+.|- -|.+|.
T Consensus 28 ~ge~vC~~CGlVl---------~e~~iD~gp-EWR~F~ 55 (58)
T 1dl6_A 28 AGDMICPECGLVV---------GDRVIDVGS-EWRTFS 55 (58)
T ss_dssp SCCEECTTTCCEE---------CCSCCCCCC-SCCCSC
T ss_pred CCeEEeCCCCCEE---------eccccccCC-cccccC
Confidence 5889999999998 445667776 799996
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=73.43 E-value=3.2 Score=24.52 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=17.6
Q ss_pred CcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc
Q 033124 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA 39 (126)
Q Consensus 2 ~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~ 39 (126)
.|.+.|..||..+ .....+.+- -|.+|.
T Consensus 22 ~gelvC~~CG~v~---------~e~~id~~~-ewr~f~ 49 (50)
T 1pft_A 22 RGEIVCAKCGYVI---------EENIIDMGP-EWRAFD 49 (50)
T ss_dssp TTEEEESSSCCBC---------CCCCCCCCS-SSSCCC
T ss_pred CCeEECcccCCcc---------cccccccCC-cccccC
Confidence 4667777787775 233345555 677774
No 13
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=65.72 E-value=3.3 Score=26.58 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=18.3
Q ss_pred ecccccccCCCCCCCCCCCCccC
Q 033124 7 CKECGTNLNLNTSHLYPATVYFP 29 (126)
Q Consensus 7 C~~Cg~~Lnlsss~~f~S~~Kf~ 29 (126)
|..||.++.-.--+||+.++||-
T Consensus 21 CP~CG~~T~~~hParfSp~Dky~ 43 (60)
T 2apo_B 21 CPKCGEKTVIPKPPKFSLEDRWG 43 (60)
T ss_dssp CSSSCSBCBCCCCCCCCTTCTTH
T ss_pred CcCCCCcCCCCCCCCCCCCcchH
Confidence 88888888777778888888763
No 14
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=57.78 E-value=2.4 Score=29.57 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=14.3
Q ss_pred eEEEEecCccCCccccccC
Q 033124 69 KRTKIKCNNCGALLGYIYD 87 (126)
Q Consensus 69 ~Rtev~C~~Cg~HLGhvF~ 87 (126)
.||++.|.+||..-..-|.
T Consensus 69 p~~~~~Cp~C~~~~a~~~q 87 (113)
T 3h0g_I 69 PRSDKECPRCHQHEAVFYQ 87 (113)
T ss_dssp CBCCSCCSSSCCSCEEEEC
T ss_pred CCcccCCCCCCCceEEEEE
Confidence 6888999999976544443
No 15
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=46.75 E-value=17 Score=24.55 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=15.0
Q ss_pred EEEEecCccCCccccccCCC
Q 033124 70 RTKIKCNNCGALLGYIYDDG 89 (126)
Q Consensus 70 Rtev~C~~Cg~HLGhvF~Dg 89 (126)
.+...|++||.+|-+...+.
T Consensus 65 ~~r~FC~~CGs~l~~~~~~~ 84 (118)
T 3fac_A 65 AKHWFCRTCGIYTHHQRRSN 84 (118)
T ss_dssp SEEEEETTTCCEEEEECSSC
T ss_pred EeeEECCCCCccccCccCCC
Confidence 36789999999987665433
No 16
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=46.01 E-value=3.2 Score=29.26 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=14.1
Q ss_pred ceEEEEecCccCCcccccc
Q 033124 68 RKRTKIKCNNCGALLGYIY 86 (126)
Q Consensus 68 ~~Rtev~C~~Cg~HLGhvF 86 (126)
..||++.|.+||.+--.-|
T Consensus 68 ~p~t~~~Cp~C~~~~a~~~ 86 (122)
T 1twf_I 68 LPRSDRECPKCHSRENVFF 86 (122)
T ss_dssp SCCCCCCCTTTCCCCEEEE
T ss_pred ccccCCCCCCCCCCEEEEE
Confidence 3678999999997654444
No 17
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=45.21 E-value=8.3 Score=24.72 Aligned_cols=22 Identities=14% Similarity=0.462 Sum_probs=14.3
Q ss_pred ecccccccCCCCCCCCCCCCcc
Q 033124 7 CKECGTNLNLNTSHLYPATVYF 28 (126)
Q Consensus 7 C~~Cg~~Lnlsss~~f~S~~Kf 28 (126)
|..||.++.-.--+||+.++||
T Consensus 20 CP~CG~~t~~ahParfSP~Dky 41 (60)
T 2aus_D 20 CPVCGEKTKVAHPPRFSPEDPY 41 (60)
T ss_dssp CTTTCSBCEESSCCCCCSCCTT
T ss_pred CcCCCCccCCCCCCCCCCCCch
Confidence 6667777655566666666655
No 18
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=44.58 E-value=32 Score=25.54 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=16.3
Q ss_pred eEEEEecCccCCccccccCCC
Q 033124 69 KRTKIKCNNCGALLGYIYDDG 89 (126)
Q Consensus 69 ~Rtev~C~~Cg~HLGhvF~Dg 89 (126)
.-....|+.||.+|-+...+.
T Consensus 95 ~~~r~FC~~CGs~l~~~~~~~ 115 (196)
T 1x6m_A 95 PIQRHRCRDCGVHMYGRIENR 115 (196)
T ss_dssp SEEEEEETTTCCEEEEEECCT
T ss_pred CeeeEECCCCCCcCCcccccC
Confidence 346789999999997776553
No 19
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=35.36 E-value=17 Score=22.53 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=8.5
Q ss_pred cEEEeccccccc
Q 033124 3 SIYSCKECGTNL 14 (126)
Q Consensus 3 G~Y~C~~Cg~~L 14 (126)
-+|.|..||...
T Consensus 2 ~iY~C~rCg~~f 13 (48)
T 4ayb_P 2 AVYRCGKCWKTF 13 (48)
T ss_dssp ---CCCCTTTTC
T ss_pred cEEEeeccCCCc
Confidence 379999999996
No 20
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=34.49 E-value=7.8 Score=27.97 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=0.0
Q ss_pred eEEEEecCccCCcccccc
Q 033124 69 KRTKIKCNNCGALLGYIY 86 (126)
Q Consensus 69 ~Rtev~C~~Cg~HLGhvF 86 (126)
.|+++.|.+||..--..|
T Consensus 89 p~t~~~CpkCg~~~a~f~ 106 (133)
T 3qt1_I 89 PRSDRECPKCHSRENVFF 106 (133)
T ss_dssp ------------------
T ss_pred CcccCCCCCCCCceEEEE
Confidence 688999999997655444
No 21
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=32.01 E-value=14 Score=22.50 Aligned_cols=11 Identities=45% Similarity=1.147 Sum_probs=9.2
Q ss_pred EecccccccCC
Q 033124 6 SCKECGTNLNL 16 (126)
Q Consensus 6 ~C~~Cg~~Lnl 16 (126)
.|..||.|+-|
T Consensus 19 vC~~CgkPi~l 29 (44)
T 2lo3_A 19 VCEKCGKPLAL 29 (44)
T ss_dssp ECTTTCCEEET
T ss_pred hhcccCCcchH
Confidence 79999999944
No 22
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=29.73 E-value=18 Score=21.80 Aligned_cols=16 Identities=44% Similarity=0.858 Sum_probs=12.4
Q ss_pred eEEEEecCccCCcccc
Q 033124 69 KRTKIKCNNCGALLGY 84 (126)
Q Consensus 69 ~Rtev~C~~Cg~HLGh 84 (126)
.++++.|.+||.+--.
T Consensus 12 ~~~~~~Cp~Cg~~~~~ 27 (57)
T 1qyp_A 12 PTTKITCPKCGNDTAY 27 (57)
T ss_dssp CEEECCCTTTCCSEEE
T ss_pred CceEeECCCCCCCEEE
Confidence 5779999999984433
No 23
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=26.17 E-value=20 Score=22.85 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.2
Q ss_pred eEEEEecCccCCccccc
Q 033124 69 KRTKIKCNNCGALLGYI 85 (126)
Q Consensus 69 ~Rtev~C~~Cg~HLGhv 85 (126)
.+|.++|++||.+-=|+
T Consensus 14 ~ktH~~CrRCG~~syH~ 30 (57)
T 1vq8_1 14 TTTHTKCRRCGEKSYHT 30 (57)
T ss_dssp CCCEEECTTTCSEEEET
T ss_pred CCccccccccCChhhhc
Confidence 46899999999986666
No 24
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.03 E-value=25 Score=15.96 Aligned_cols=12 Identities=33% Similarity=1.016 Sum_probs=9.4
Q ss_pred cEEEeccccccc
Q 033124 3 SIYSCKECGTNL 14 (126)
Q Consensus 3 G~Y~C~~Cg~~L 14 (126)
+.|.|..|+...
T Consensus 1 ~~~~C~~C~k~f 12 (29)
T 2m0f_A 1 GPLKCRECGKQF 12 (29)
T ss_dssp CCEECTTTSCEE
T ss_pred CCccCCCCCCcc
Confidence 358999999874
No 25
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.25 E-value=22 Score=22.80 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=11.3
Q ss_pred cEEEecccccccCC
Q 033124 3 SIYSCKECGTNLNL 16 (126)
Q Consensus 3 G~Y~C~~Cg~~Lnl 16 (126)
-.|.|+.||.+..|
T Consensus 20 v~Y~C~~Cg~~~~l 33 (63)
T 3h0g_L 20 MIYLCADCGARNTI 33 (63)
T ss_dssp CCCBCSSSCCBCCC
T ss_pred eEEECCCCCCeeec
Confidence 46999999999743
No 26
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=21.84 E-value=30 Score=27.76 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=15.6
Q ss_pred CcEEEecccccccCCCCCCCCCCCCccCCCCCcccccc
Q 033124 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFA 39 (126)
Q Consensus 2 ~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~ 39 (126)
.|.++|..||.-| .+.-.+.+. -|-+|.
T Consensus 40 ~G~~vC~~CG~Vl---------~e~~id~~~-EwR~F~ 67 (345)
T 3k7a_M 40 EGDVVCALCGLVL---------SDKLVDTRS-EWRTFS 67 (345)
T ss_dssp SCSCCCSSSCCCC---------CCCCCCTTC-CCCCC-
T ss_pred CCCEecCCCCeEc---------ccccccCCc-cccccc
Confidence 4666777777766 333445444 566664
No 27
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=21.14 E-value=17 Score=28.32 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=23.2
Q ss_pred CcEEEecccccccCCCCCCCCCCCCccCCCCCccccccc
Q 033124 2 ASIYSCKECGTNLNLNTSHLYPATVYFPAGNKGTLSFAM 40 (126)
Q Consensus 2 ~G~Y~C~~Cg~~Lnlsss~~f~S~~Kf~sg~~GwpSF~~ 40 (126)
.|.++|..||.-| .+.--|.|- -|.+|..
T Consensus 40 rGE~VCsdCGLVL---------EEriID~GP-EWRAFsn 68 (197)
T 3k1f_M 40 EGDVVCALCGLVL---------SDKLVDTRS-EWRTFSN 68 (197)
T ss_dssp GTEEEETTTCBBC---------CCCCBCHHH-HHHHHHC
T ss_pred CCEEEEcCCCCCc---------CCceeECCC-CCcCcCC
Confidence 5889999999998 445567776 8999974
No 28
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.49 E-value=32 Score=20.61 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=9.4
Q ss_pred EEEeccccccc
Q 033124 4 IYSCKECGTNL 14 (126)
Q Consensus 4 ~Y~C~~Cg~~L 14 (126)
.|.|..||+--
T Consensus 4 ~y~C~vCGyvy 14 (46)
T 6rxn_A 4 KYVCNVCGYEY 14 (46)
T ss_dssp CEEETTTCCEE
T ss_pred EEECCCCCeEE
Confidence 69999999874
No 29
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=20.04 E-value=39 Score=18.79 Aligned_cols=12 Identities=33% Similarity=1.085 Sum_probs=9.9
Q ss_pred cEEEeccccccc
Q 033124 3 SIYSCKECGTNL 14 (126)
Q Consensus 3 G~Y~C~~Cg~~L 14 (126)
.+|.|..||+-+
T Consensus 5 ~fY~C~~CGniv 16 (36)
T 1dxg_A 5 DVYKCELCGQVV 16 (36)
T ss_dssp CEEECTTTCCEE
T ss_pred cEEEcCCCCcEE
Confidence 479999998876
Done!