Query 033131
Match_columns 126
No_of_seqs 145 out of 1267
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_Y 50S ribosomal protein L 100.0 6.8E-44 2.3E-48 255.8 12.0 106 1-106 5-110 (110)
2 3bbo_W Ribosomal protein L24; 100.0 8.3E-46 2.8E-50 286.5 -4.2 123 1-125 67-189 (191)
3 3r8s_U 50S ribosomal protein L 100.0 2.2E-41 7.5E-46 240.0 11.9 100 1-102 2-102 (102)
4 2ftc_N Mitochondrial ribosomal 100.0 2.7E-40 9.1E-45 232.2 12.2 96 6-102 1-96 (96)
5 2zjr_R 50S ribosomal protein L 100.0 4.2E-41 1.4E-45 242.8 2.4 102 1-103 14-115 (115)
6 1vq8_T 50S ribosomal protein L 99.9 1.7E-25 5.6E-30 162.4 5.3 71 1-82 41-111 (120)
7 3j21_U 50S ribosomal protein L 99.9 3.8E-24 1.3E-28 155.5 6.5 72 1-83 44-115 (121)
8 2zkr_t 60S ribosomal protein L 99.9 3.5E-23 1.2E-27 154.4 5.9 80 1-94 47-127 (145)
9 3u5e_Y L33, YL33, 60S ribosoma 99.9 1.2E-22 4.2E-27 148.6 7.2 66 1-77 48-113 (127)
10 4a17_S RPL26, 60S ribosomal pr 99.9 1.7E-22 5.7E-27 149.1 7.1 66 1-77 47-112 (135)
11 3iz5_Y 60S ribosomal protein L 99.9 3.8E-22 1.3E-26 149.4 7.6 66 1-77 47-112 (150)
12 1nz9_A Transcription antitermi 98.2 1.6E-06 5.5E-11 54.2 4.9 35 2-36 4-38 (58)
13 3p8b_B Transcription antitermi 97.7 3.5E-05 1.2E-09 56.1 5.0 58 2-74 91-148 (152)
14 2e6z_A Transcription elongatio 97.4 5.9E-05 2E-09 47.6 2.1 32 2-35 7-38 (59)
15 2jvv_A Transcription antitermi 97.2 0.00045 1.5E-08 51.3 5.2 35 2-36 127-161 (181)
16 2do3_A Transcription elongatio 97.2 0.00053 1.8E-08 45.0 4.5 38 2-40 17-54 (69)
17 2ckk_A KIN17; beta barrel, rib 96.8 0.0014 4.9E-08 47.1 4.8 33 4-36 72-104 (127)
18 2xhc_A Transcription antitermi 96.3 0.0052 1.8E-07 50.8 5.5 35 2-36 298-332 (352)
19 1m1h_A Transcription antitermi 95.8 0.0015 5.1E-08 51.7 0.0 35 2-36 194-228 (248)
20 4a18_F RPL14; ribosome, eukary 94.6 0.066 2.3E-06 38.6 5.5 36 3-39 7-42 (126)
21 3izc_N 60S ribosomal protein R 93.1 0.079 2.7E-06 38.8 3.6 36 3-39 15-50 (138)
22 2joy_A 50S ribosomal protein L 93.1 0.078 2.7E-06 36.2 3.3 36 3-39 4-39 (96)
23 4a18_N RPL27, ribosomal protei 93.0 0.16 5.5E-06 37.4 5.2 39 3-41 5-49 (144)
24 3iz5_N 60S ribosomal protein L 92.9 0.087 3E-06 38.4 3.5 36 3-39 7-42 (134)
25 3j21_5 50S ribosomal protein L 92.1 0.11 3.7E-06 34.8 2.9 37 2-39 3-39 (83)
26 2e70_A Transcription elongatio 91.3 0.23 7.8E-06 32.5 3.8 30 5-36 20-49 (71)
27 3iz5_G 60S ribosomal protein L 82.3 0.76 2.6E-05 35.9 2.6 62 3-70 75-139 (219)
28 1qp2_A Protein (PSAE protein); 79.6 2.1 7.3E-05 27.9 3.6 38 3-40 2-45 (70)
29 3iz6_D 40S ribosomal protein S 78.5 2.7 9.4E-05 33.6 4.7 30 2-31 174-203 (265)
30 4a18_E RPL6; ribosome, eukaryo 77.6 2.6 8.9E-05 32.3 4.2 64 2-71 44-110 (191)
31 3izc_G 60S ribosomal protein R 76.4 1.7 5.9E-05 32.9 2.9 62 3-70 34-98 (176)
32 2oug_A Transcriptional activat 73.5 0.0076 2.6E-07 43.6 -10.5 29 2-30 109-137 (162)
33 3kbg_A 30S ribosomal protein S 72.8 3.8 0.00013 31.8 4.0 35 2-36 138-176 (213)
34 2xzm_W 40S ribosomal protein S 71.6 7.5 0.00026 30.9 5.6 35 2-36 176-213 (260)
35 3j20_E 30S ribosomal protein S 70.6 3.2 0.00011 32.7 3.3 36 2-37 178-217 (243)
36 3u5c_E RP5, S7, YS6, 40S ribos 66.5 3.3 0.00011 33.0 2.6 30 2-31 174-203 (261)
37 1at0_A 17-hedgehog; developmen 60.2 16 0.00054 25.7 5.0 25 2-26 91-116 (145)
38 1zuy_A Myosin-5 isoform; SH3 d 57.3 12 0.00043 21.3 3.4 16 1-16 18-33 (58)
39 1jb0_E Photosystem 1 reaction 55.0 19 0.00066 23.5 4.3 27 3-29 1-29 (75)
40 1sem_A SEM-5; SRC-homology 3 ( 55.0 9.4 0.00032 22.0 2.6 15 1-15 19-33 (58)
41 2g6f_X RHO guanine nucleotide 54.2 9.8 0.00033 22.1 2.6 15 1-15 21-35 (59)
42 2ew3_A SH3-containing GRB2-lik 53.7 9.6 0.00033 23.2 2.6 15 1-15 20-34 (68)
43 3izc_a 60S ribosomal protein R 52.1 0.92 3.2E-05 33.1 -2.7 39 3-41 5-49 (136)
44 2bzy_A CRK-like protein, CRKL 50.1 12 0.00041 22.4 2.6 15 1-15 20-34 (67)
45 1zuu_A BZZ1 protein; SH3 domai 50.0 17 0.00057 20.8 3.2 16 1-16 18-33 (58)
46 2ak5_A RHO guanine nucleotide 49.6 13 0.00043 21.9 2.6 15 1-15 23-37 (64)
47 1ruw_A Myosin-3 isoform, MYO3; 48.9 19 0.00066 21.4 3.4 15 1-15 20-34 (69)
48 2a28_A BZZ1 protein; SH3 domai 48.3 26 0.00089 19.8 3.8 15 1-15 17-31 (54)
49 2ege_A Uncharacterized protein 47.8 13 0.00045 22.8 2.6 13 1-13 31-43 (75)
50 2xmf_A Myosin 1E SH3; motor pr 47.8 14 0.00048 21.4 2.6 15 1-15 22-36 (60)
51 2zzd_A Thiocyanate hydrolase s 47.6 16 0.00055 26.1 3.3 26 2-27 36-71 (126)
52 1w70_A Neutrophil cytosol fact 47.3 14 0.0005 21.4 2.6 14 2-15 22-35 (60)
53 2gnc_A SLIT-ROBO RHO GTPase-ac 47.1 15 0.0005 21.4 2.6 14 1-14 23-36 (60)
54 2yuo_A CIP85, RUN and TBC1 dom 46.7 14 0.00049 22.7 2.6 13 1-13 24-36 (78)
55 2x3w_D Syndapin I, protein kin 46.5 20 0.00069 20.6 3.2 14 1-14 20-33 (60)
56 4e8b_A Ribosomal RNA small sub 46.1 20 0.0007 27.5 3.9 34 1-34 32-65 (251)
57 1x2k_A OSTF1, osteoclast stimu 46.0 17 0.00058 21.7 2.8 14 1-14 24-37 (68)
58 3iz5_a 60S ribosomal protein L 46.0 0.96 3.3E-05 33.0 -3.5 39 3-41 5-49 (136)
59 3c0c_A Endophilin-A2; endocyto 45.9 15 0.00052 22.3 2.6 15 1-15 30-44 (73)
60 2eyx_A V-CRK sarcoma virus CT1 45.9 12 0.00041 22.5 2.1 13 2-14 26-38 (67)
61 2iim_A Proto-oncogene tyrosine 45.7 19 0.00065 21.0 3.0 14 1-14 23-36 (62)
62 1vhy_A Hypothetical protein HI 45.2 21 0.00072 27.5 3.9 35 1-35 34-68 (257)
63 1j3t_A Intersectin 2; beta bar 44.8 14 0.00049 22.5 2.4 14 1-14 27-40 (74)
64 2dl3_A Sorbin and SH3 domain-c 44.6 19 0.00066 21.3 2.9 14 1-14 24-37 (68)
65 1uhc_A KIAA1010 protein; beta 44.4 18 0.00063 22.2 2.9 15 1-15 30-44 (79)
66 2dl8_A SLIT-ROBO RHO GTPase-ac 44.3 17 0.00056 22.1 2.6 13 1-13 26-38 (72)
67 3eg3_A Proto-oncogene tyrosine 43.5 18 0.00062 20.9 2.6 13 1-13 22-34 (63)
68 1k1z_A VAV; SH3, proto-oncogen 42.9 31 0.0011 21.0 3.8 14 1-14 35-48 (78)
69 1csk_A C-SRC SH3 domain; phosp 42.7 21 0.00073 21.3 2.9 13 1-13 28-40 (71)
70 3qyh_B CO-type nitrIle hydrata 42.6 19 0.00066 27.7 3.2 26 2-27 130-165 (219)
71 1vhk_A Hypothetical protein YQ 42.2 27 0.00091 27.1 4.1 30 1-30 35-64 (268)
72 4a17_P RPL21, 60S ribosomal pr 42.0 25 0.00086 25.9 3.7 46 3-48 34-99 (157)
73 2ydl_A SH3 domain-containing k 41.8 19 0.00065 21.9 2.6 14 1-14 19-32 (69)
74 1gcq_C VAV proto-oncogene; SH3 41.8 34 0.0012 20.3 3.8 14 1-14 27-40 (70)
75 2ysq_A RHO guanine nucleotide 41.7 22 0.00074 22.0 2.9 14 1-14 27-40 (81)
76 3hht_B NitrIle hydratase beta 41.6 21 0.00072 27.7 3.3 26 2-27 141-176 (229)
77 3dcl_A TM1086; SAD, structural 41.5 41 0.0014 27.0 5.0 32 5-36 86-117 (284)
78 3kw2_A Probable R-RNA methyltr 41.4 25 0.00087 27.1 3.8 34 1-34 31-64 (257)
79 1z85_A Hypothetical protein TM 41.3 26 0.00089 26.8 3.8 35 1-35 39-73 (234)
80 2jz2_A SSL0352 protein; SH3-li 41.1 40 0.0014 21.5 4.0 39 3-41 2-42 (66)
81 1w1f_A Tyrosine-protein kinase 40.9 20 0.00067 21.0 2.5 14 1-14 24-37 (65)
82 2k9g_A SH3 domain-containing k 40.1 21 0.00072 21.5 2.6 14 1-14 26-39 (73)
83 1uhf_A Intersectin 2; beta bar 39.6 25 0.00085 21.1 2.9 13 1-13 25-37 (69)
84 2ebp_A SAM and SH3 domain-cont 39.5 25 0.00086 21.5 2.9 15 1-15 28-42 (73)
85 1vq8_Q 50S ribosomal protein L 38.9 26 0.0009 23.8 3.1 34 3-36 34-77 (96)
86 2epd_A RHO GTPase-activating p 38.4 19 0.00064 22.1 2.2 13 2-14 28-40 (76)
87 2dmo_A Neutrophil cytosol fact 38.3 21 0.00072 21.3 2.4 14 1-14 24-37 (68)
88 2dl7_A KIAA0769 protein; SH3 d 38.2 23 0.0008 21.3 2.6 14 1-14 25-38 (73)
89 1ugp_B NitrIle hydratase beta 37.8 26 0.0009 27.1 3.3 26 2-27 138-173 (226)
90 3udc_A Small-conductance mecha 37.3 30 0.001 26.7 3.6 23 2-29 128-150 (285)
91 2lcs_A NAP1-binding protein 2; 37.2 29 0.00098 21.2 2.9 14 1-14 22-35 (73)
92 2fei_A CD2-associated protein; 36.6 18 0.00062 21.7 1.8 14 1-14 18-31 (65)
93 2d8h_A SH3YL1 protein; SH3 dom 36.4 36 0.0012 20.8 3.3 14 2-15 35-48 (80)
94 1yn8_A NBP2, NAP1-binding prot 36.4 25 0.00086 20.0 2.4 13 1-13 18-30 (59)
95 1i07_A Epidermal growth factor 36.0 25 0.00086 20.3 2.4 14 1-14 18-31 (60)
96 2dlp_A KIAA1783 protein; SH3 d 36.0 24 0.00082 22.1 2.4 13 1-13 25-37 (85)
97 1x69_A Cortactin isoform A; SH 35.7 26 0.0009 21.5 2.6 14 1-14 34-47 (79)
98 2vkn_A Protein SSU81; membrane 35.5 38 0.0013 20.2 3.2 13 1-13 24-36 (70)
99 2enm_A Sorting nexin-9; SH3-li 34.9 47 0.0016 20.1 3.7 14 1-14 27-40 (77)
100 1v6z_A Hypothetical protein TT 34.9 45 0.0015 25.1 4.2 33 1-35 27-59 (228)
101 2l0a_A STAM-1, signal transduc 34.4 26 0.00088 21.7 2.3 13 1-13 34-46 (72)
102 2oi3_A Tyrosine-protein kinase 34.4 27 0.00092 21.7 2.5 13 2-14 43-55 (86)
103 1nm7_A Peroxisomal membrane pr 34.2 40 0.0014 20.7 3.3 15 1-15 25-39 (69)
104 2da9_A SH3-domain kinase bindi 33.9 28 0.00094 20.8 2.4 14 1-14 24-37 (70)
105 2ega_A SH3 and PX domain-conta 33.8 21 0.00072 21.3 1.8 14 1-14 25-38 (70)
106 2oqk_A Putative translation in 33.1 53 0.0018 22.5 4.0 29 2-30 70-98 (117)
107 2bz8_A SH3-domain kinase bindi 33.0 36 0.0012 19.4 2.8 16 1-16 18-33 (58)
108 3gqh_A Preneck appendage prote 32.7 13 0.00045 27.7 0.8 34 70-103 5-38 (163)
109 1wxt_A Hypothetical protein FL 32.7 38 0.0013 20.1 2.9 13 1-13 24-36 (68)
110 2v1r_A Peroxisomal membrane pr 32.3 39 0.0013 20.6 2.9 15 1-15 32-46 (80)
111 4fm4_B NitrIle hydratase beta 31.9 34 0.0012 26.0 3.1 26 2-27 118-153 (206)
112 4bbr_M Transcription initiatio 31.3 20 0.0007 28.8 1.8 45 67-114 19-69 (345)
113 1u5s_A Cytoplasmic protein NCK 30.7 38 0.0013 20.1 2.7 13 2-14 24-36 (71)
114 2lj0_A Sorbin and SH3 domain-c 30.7 36 0.0012 20.6 2.5 17 1-17 23-39 (65)
115 1jqq_A PEX13P, peroxisomal mem 30.2 42 0.0015 21.1 2.9 15 1-15 32-46 (92)
116 1jo8_A ABP1P, actin binding pr 30.2 41 0.0014 19.1 2.7 14 1-14 17-30 (58)
117 2csi_A RIM-BP2, RIM binding pr 29.9 59 0.002 19.7 3.5 13 2-14 32-44 (76)
118 1x6g_A Megakaryocyte-associate 29.8 62 0.0021 19.9 3.7 14 1-14 34-47 (81)
119 2dl5_A KIAA0769 protein; SH3 d 29.8 49 0.0017 20.2 3.1 14 2-15 31-44 (78)
120 1gbq_A GRB2; complex (signal t 29.8 44 0.0015 20.2 2.9 15 1-15 26-40 (74)
121 1ugv_A KIAA0621, olygophrenin- 29.4 20 0.00068 21.7 1.1 13 1-13 27-39 (72)
122 3rnj_A Brain-specific angiogen 29.1 54 0.0018 19.2 3.1 13 2-14 26-38 (67)
123 2egv_A UPF0088 protein AQ_165; 28.9 37 0.0013 25.6 2.8 29 1-30 27-55 (229)
124 1k4u_S Phagocyte NADPH oxidase 28.8 40 0.0014 19.5 2.4 14 1-14 22-35 (62)
125 1cka_A C-CRK N-terminal SH3 do 28.8 44 0.0015 18.9 2.6 14 1-14 18-31 (57)
126 1uti_A GRB2-related adaptor pr 28.6 46 0.0016 18.9 2.7 14 1-14 18-31 (58)
127 3iz5_U 60S ribosomal protein L 28.1 32 0.0011 25.6 2.2 33 3-35 34-76 (164)
128 2yup_A Vinexin; sorbin and SH3 28.0 38 0.0013 21.3 2.4 14 1-14 34-47 (90)
129 2nwm_A Vinexin; cell adhesion; 28.0 48 0.0016 19.7 2.8 16 1-16 18-33 (65)
130 2vwf_A Growth factor receptor- 27.8 48 0.0017 18.7 2.7 14 1-14 19-32 (58)
131 2v1q_A SLA1, cytoskeleton asse 27.8 37 0.0013 19.3 2.1 14 1-14 19-32 (60)
132 2fpe_A C-JUN-amino-terminal ki 27.8 45 0.0015 19.3 2.5 14 1-14 20-33 (62)
133 2drm_A Acanthamoeba myosin IB; 27.6 51 0.0017 18.6 2.7 15 1-15 20-34 (58)
134 1wx6_A Cytoplasmic protein NCK 27.4 71 0.0024 19.9 3.6 14 1-14 34-47 (91)
135 1uj0_A Signal transducing adap 27.2 49 0.0017 19.1 2.7 14 1-14 22-35 (62)
136 1oot_A Hypothetical 40.4 kDa p 27.0 39 0.0013 19.3 2.1 15 1-15 20-34 (60)
137 1wi7_A SH3-domain kinase bindi 26.9 31 0.0011 20.4 1.7 13 1-13 24-36 (68)
138 2csq_A RIM-BP2, RIM binding pr 26.8 75 0.0026 20.2 3.8 13 1-13 42-54 (97)
139 2oaw_A Spectrin alpha chain, b 26.7 51 0.0017 19.0 2.7 14 1-14 18-31 (65)
140 1gl5_A Tyrosine-protein kinase 26.6 49 0.0017 19.4 2.6 15 1-15 19-33 (67)
141 2fpf_A C-JUN-amino-terminal ki 26.6 47 0.0016 19.8 2.5 15 1-15 23-37 (71)
142 1y0m_A 1-phosphatidylinositol- 26.5 52 0.0018 18.9 2.7 15 1-15 20-34 (61)
143 2rf0_A Mitogen-activated prote 26.5 54 0.0019 20.9 3.0 14 1-14 46-59 (89)
144 2k52_A Uncharacterized protein 26.3 1.1E+02 0.0038 18.7 4.4 23 3-35 46-68 (80)
145 2j05_A RAS GTPase-activating p 26.0 50 0.0017 19.3 2.5 14 1-14 23-36 (65)
146 1x6b_A RHO guanine exchange fa 26.0 36 0.0012 20.9 1.9 12 2-13 35-46 (79)
147 4a4f_A SurviVal of motor neuro 26.0 1.1E+02 0.0038 18.3 5.0 34 2-35 8-42 (64)
148 1zx6_A YPR154WP; SH3 domain, p 25.7 51 0.0017 18.7 2.5 14 1-14 19-32 (58)
149 2jte_A CD2-associated protein; 25.3 43 0.0015 19.4 2.1 14 1-14 23-36 (64)
150 2vv5_A MSCS, small-conductance 25.1 43 0.0015 25.9 2.6 23 2-29 129-151 (286)
151 3i5r_A Phosphatidylinositol 3- 25.1 82 0.0028 19.3 3.6 13 1-13 22-34 (83)
152 1whl_A Cylindromatosis tumor s 24.8 81 0.0028 20.9 3.6 27 2-28 7-34 (95)
153 4glm_A Dynamin-binding protein 24.7 54 0.0018 19.3 2.5 17 1-17 30-46 (72)
154 1zlm_A Osteoclast stimulating 24.5 60 0.0021 18.4 2.7 14 1-14 20-33 (58)
155 4e6r_A Cytoplasmic protein NCK 24.5 57 0.002 18.3 2.5 16 1-16 18-33 (58)
156 3izc_U 60S ribosomal protein R 24.5 58 0.002 24.0 3.1 33 3-35 34-76 (160)
157 3ulr_B SRC substrate cortactin 24.4 59 0.002 18.7 2.7 17 1-17 26-42 (65)
158 2j6f_A CD2-associated protein; 24.4 55 0.0019 18.9 2.5 14 1-14 18-31 (62)
159 3k1f_M Transcription initiatio 24.4 56 0.0019 24.9 3.0 52 67-121 19-78 (197)
160 4b6m_A Tubulin-specific chaper 24.4 66 0.0023 21.1 3.1 24 2-28 5-28 (84)
161 1d7q_A Translation initiation 24.4 90 0.0031 22.5 4.1 31 1-31 68-98 (143)
162 1b07_A Protein (proto-oncogene 24.1 58 0.002 19.2 2.6 14 1-14 20-33 (65)
163 2i0n_A Class VII unconventiona 24.0 66 0.0023 19.7 2.9 17 1-17 27-43 (80)
164 3cqt_A P59-FYN, proto-oncogene 23.8 59 0.002 20.1 2.7 15 1-15 22-36 (79)
165 4esr_A Jouberin; AHI-1, AHI1, 23.7 56 0.0019 19.2 2.5 15 1-15 23-37 (69)
166 2djq_A SH3 domain containing r 23.7 63 0.0021 18.9 2.7 14 1-14 24-37 (68)
167 1x2p_A Protein arginine N-meth 23.5 62 0.0021 19.0 2.7 15 1-15 24-38 (68)
168 3h0h_A Proto-oncogene tyrosine 23.5 60 0.0021 19.2 2.6 15 1-15 32-46 (73)
169 1jt8_A EIF-1A, probable transl 23.4 60 0.0021 22.0 2.8 28 2-29 58-86 (102)
170 1ue9_A Intersectin 2; beta bar 23.2 56 0.0019 19.8 2.5 15 1-15 24-38 (80)
171 3ngp_A Spectrin alpha chain, b 23.0 67 0.0023 18.2 2.7 16 1-16 23-38 (62)
172 4f14_A Nebulette; SH3 domain, 22.9 61 0.0021 18.5 2.5 15 1-15 23-37 (64)
173 2cuc_A SH3 domain containing r 22.9 50 0.0017 19.4 2.1 14 1-14 24-37 (70)
174 2jt4_A Cytoskeleton assembly c 22.5 67 0.0023 18.9 2.7 14 1-14 23-36 (71)
175 1wyx_A CRK-associated substrat 22.3 52 0.0018 19.4 2.1 15 1-15 20-34 (69)
176 2pqh_A Spectrin alpha chain, b 22.3 66 0.0022 19.7 2.7 16 1-16 19-34 (80)
177 2k2m_A EPS8-like protein 1; al 21.8 54 0.0019 19.4 2.1 13 1-13 25-37 (68)
178 1wxb_A Epidermal growth factor 21.7 55 0.0019 19.3 2.1 13 1-13 24-36 (68)
179 2zkr_q 60S ribosomal protein L 21.6 36 0.0012 25.2 1.4 34 3-36 34-77 (160)
180 2ct4_A CDC42-interacting prote 21.4 56 0.0019 19.3 2.1 14 1-14 24-37 (70)
181 2kxd_A 11-MER peptide, SH3 dom 21.3 72 0.0025 19.1 2.7 15 1-15 16-30 (73)
182 3u23_A CD2-associated protein; 21.3 58 0.002 18.7 2.1 14 1-14 24-37 (65)
183 2ke9_A Caskin-2; SH3 domain, A 21.3 55 0.0019 20.5 2.2 16 1-16 36-51 (83)
184 1tuc_A Alpha-spectrin; capping 21.2 75 0.0026 18.5 2.7 16 1-16 6-21 (63)
185 2b86_A Cytoplasmic protein NCK 20.6 59 0.002 19.6 2.1 13 1-13 21-33 (67)
186 2dl4_A Protein STAC; SH3 domai 20.4 80 0.0027 18.6 2.7 13 1-13 24-36 (68)
187 2jw4_A Cytoplasmic protein NCK 20.2 60 0.0021 19.4 2.1 13 1-13 24-36 (72)
188 2ct3_A Vinexin; SH3 domian, st 20.1 58 0.002 19.1 2.0 13 2-14 25-37 (70)
No 1
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=100.00 E-value=6.8e-44 Score=255.82 Aligned_cols=106 Identities=36% Similarity=0.570 Sum_probs=101.1
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecCCCCeee
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASR 80 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~~~~~~r 80 (126)
|+|++||+|+||+|+|||++|+|++|++++++|+|||+|++++|+||++++.+|||+++|+|||+|||+|+||.+++|||
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~tR 84 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTR 84 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCTTTCSBCC
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcCcCCCccE
Confidence 58999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EEEEEccCCcEEEEEcccCcccccch
Q 033131 81 VGHKVLDDGTRVRYLIKTGEIIDSAE 106 (126)
Q Consensus 81 v~~~~~~dG~kvRv~k~sg~~i~~p~ 106 (126)
|+|++++||+++|||++||++|+.||
T Consensus 85 vg~~~~edG~kvRv~kk~g~~i~~~~ 110 (110)
T 3v2d_Y 85 VRKKFLENGKKIRVCAKCGGALDTEE 110 (110)
T ss_dssp EEEEECSSCCEEEEESSSCCBCC---
T ss_pred EEEEECCCCcEEEEEecCCCccCCCC
Confidence 99999999999999999999999875
No 2
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=8.3e-46 Score=286.47 Aligned_cols=123 Identities=63% Similarity=0.972 Sum_probs=103.5
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecCCCCeee
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASR 80 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~~~~~~r 80 (126)
|+|++||+|+||+|+||||+|+|++|++++++|+|||+|++++|+||++.+.+|||+++|+|||+|||+|+||.+++|+|
T Consensus 67 mkIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~Lvdp~~gkptR 146 (191)
T 3bbo_W 67 RHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADR 146 (191)
T ss_dssp CCSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSSSSCCCCC
T ss_pred CeeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeCCEEEEEecCCcccCCCCCEEEEecCcCHHHeEEEeccCCCceE
Confidence 46999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EEEEEccCCcEEEEEcccCcccccchhhhhhhhcccceeeeeecc
Q 033131 81 VGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATA 125 (126)
Q Consensus 81 v~~~~~~dG~kvRv~k~sg~~i~~p~~~~~~~k~~~~~~~~~~~~ 125 (126)
|+|++++||+|+|||++||++|+.|+.|+++.+++. +||++.|
T Consensus 147 Vg~k~~edGkKVRv~KksGe~I~~p~~~~~~~~~~~--~~~~~~~ 189 (191)
T 3bbo_W 147 VGHKILEDVRKVRYLIKTGEIVDTPDRWKEIQNKKE--SETAVAV 189 (191)
T ss_dssp CCCCSSSCCCCCSSSCCSSSCCCCCC-------------------
T ss_pred EEEEEccCCcEEEEEecCCCCcCChhHHHHHHhccc--chhhhhh
Confidence 999998899999999999999999999999999964 4565554
No 3
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=100.00 E-value=2.2e-41 Score=239.98 Aligned_cols=100 Identities=36% Similarity=0.606 Sum_probs=96.5
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcc-cCCceEEEEeecCcCCCeeeeecCCCCee
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE-EEQGQIIKIEAPIHSSNVMLYSKEMEVAS 79 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~-~~~ggi~~~e~pI~~SNV~Lv~p~~~~~~ 79 (126)
++|++||+|+||+|+|||++|+|++|+++ ++|+|||+|+.++|++|+++ +.+|||+++|+|||+|||||+||++++||
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~t 80 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKAD 80 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEETTTTEEE
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcCcCCCce
Confidence 38999999999999999999999999999 99999999999999999876 78999999999999999999999999999
Q ss_pred eEEEEEccCCcEEEEEcccCccc
Q 033131 80 RVGHKVLDDGTRVRYLIKTGEII 102 (126)
Q Consensus 80 rv~~~~~~dG~kvRv~k~sg~~i 102 (126)
||+|+ ++||+++|||++||++|
T Consensus 81 rvg~~-~edG~kvRv~k~~g~~i 102 (102)
T 3r8s_U 81 RVGFR-FEDGKKVRFFKSNSETI 102 (102)
T ss_dssp CEEEE-EETTEEEEEETTTTEEC
T ss_pred EEEEE-eCCCeEEEEEeecCcCC
Confidence 99999 79999999999999876
No 4
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=100.00 E-value=2.7e-40 Score=232.18 Aligned_cols=96 Identities=30% Similarity=0.499 Sum_probs=93.5
Q ss_pred CCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecCCCCeeeEEEEE
Q 033131 6 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKV 85 (126)
Q Consensus 6 GD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~~~~~~rv~~~~ 85 (126)
||+|+||+|+|||++|+|++|++++++|+|||+|+.++|+||++ +.+|||+++|+|||+|||||+||.+++|+|++|++
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN~~kkh~kp~~-~~~Ggiv~~e~pIh~SNV~lv~p~~~k~tRvg~~~ 79 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRF 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCCEEEEEEcCCCC-CCCCCEEEEecCcCHHHEEEEeCcCCCceEEEEEE
Confidence 89999999999999999999999999999999999999999987 77899999999999999999999999999999999
Q ss_pred ccCCcEEEEEcccCccc
Q 033131 86 LDDGTRVRYLIKTGEII 102 (126)
Q Consensus 86 ~~dG~kvRv~k~sg~~i 102 (126)
++||+++|||++||++|
T Consensus 80 ~~dg~kvR~~kk~g~~i 96 (96)
T 2ftc_N 80 TEAGERVRVSTRSGRII 96 (96)
T ss_pred ccCCcEEEEEeccCCCC
Confidence 99999999999999876
No 5
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=100.00 E-value=4.2e-41 Score=242.84 Aligned_cols=102 Identities=35% Similarity=0.543 Sum_probs=97.7
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecCCCCeee
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASR 80 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~~~~~~r 80 (126)
|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++|+||++.+.+|||+++|+|||+|||+|+||++++|||
T Consensus 14 m~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p~~~k~tR 93 (115)
T 2zjr_R 14 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATR 93 (115)
T ss_dssp CSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSSSBCCCC
T ss_pred CcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEeccCCCceE
Confidence 68999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EEEEEccCCcEEEEEcccCcccc
Q 033131 81 VGHKVLDDGTRVRYLIKTGEIID 103 (126)
Q Consensus 81 v~~~~~~dG~kvRv~k~sg~~i~ 103 (126)
++|++ +||+++|||++||++|+
T Consensus 94 vg~~~-~dG~kvR~~kk~g~~i~ 115 (115)
T 2zjr_R 94 VRKQI-VDGKKVRVAVASGKTID 115 (115)
T ss_dssp CCCCC-SCTTSCCCCSSSCCC--
T ss_pred EEEEE-cCCCEEEEEeecCCCcC
Confidence 99998 89999999999999883
No 6
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=99.91 E-value=1.7e-25 Score=162.45 Aligned_cols=71 Identities=32% Similarity=0.522 Sum_probs=66.0
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecCCCCeee
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASR 80 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~~~~~~r 80 (126)
|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+ ++ + +|| ++|+|||+|||+|++|.+++++|
T Consensus 41 ~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~-kK---~-----~Gg--~~e~pIh~SNV~i~~~~~~k~~R 109 (120)
T 1vq8_T 41 VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTL-EK---T-----DGE--EVPRPLDTSNVRVTDLDLEDEKR 109 (120)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEE-EC---S-----SSC--EEECCBCGGGEEEEECCCCCHHH
T ss_pred ccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEe-Ec---C-----CCC--EEEeeechHHEEEEeccCCCchh
Confidence 5799999999999999999999999999999999999999 53 2 456 99999999999999999999999
Q ss_pred EE
Q 033131 81 VG 82 (126)
Q Consensus 81 v~ 82 (126)
++
T Consensus 110 v~ 111 (120)
T 1vq8_T 110 EA 111 (120)
T ss_dssp HH
T ss_pred he
Confidence 87
No 7
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.90 E-value=3.8e-24 Score=155.47 Aligned_cols=72 Identities=29% Similarity=0.473 Sum_probs=65.9
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecCCCCeee
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASR 80 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~~~~~~r 80 (126)
|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++| | .++|+|||+|||+|+||.+++++|
T Consensus 44 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~~k~~---------G--~~~e~pIh~SNV~l~~~~~~d~~R 112 (121)
T 3j21_U 44 LPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTN---------G--TEVFYPIHPSNVMIIELNLEDEKR 112 (121)
T ss_dssp EECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEECSS---------S--CEEECCBCGGGEEEEECCCCCHHH
T ss_pred cccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEEEecC---------C--cEEEcccCHHHeEEEcCccCCcHH
Confidence 57999999999999999999999999999999999999999731 2 289999999999999999999988
Q ss_pred EEE
Q 033131 81 VGH 83 (126)
Q Consensus 81 v~~ 83 (126)
+++
T Consensus 113 ~~~ 115 (121)
T 3j21_U 113 KKI 115 (121)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 8
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.88 E-value=3.5e-23 Score=154.39 Aligned_cols=80 Identities=24% Similarity=0.514 Sum_probs=65.4
Q ss_pred CCcccCCEEEEeecCCCCeE-eEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecCCCCee
Q 033131 1 MHVKAGDTVKVIAGCDKGKI-GEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVAS 79 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~-G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~~~~~~ 79 (126)
|+|++||+|+||+|+|||++ |+|++|++++++|+|||+|+. +|+ | +++|+|||+|||+|+||.+++++
T Consensus 47 ~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~~----Kp~-----G--~~~e~PIh~SNV~lv~~~~~k~~ 115 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQRE----KAN-----G--TTVHVGIHPSKVVITRLKLDKDR 115 (145)
T ss_dssp CBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEEE----CSS-----C--CEEECCBCGGGEEECC-CCCHHH
T ss_pred cccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEeE----cCC-----C--ceEEeccCHHHEEEEcCcCCchH
Confidence 68999999999999999999 999999999999999999993 454 3 79999999999999999999998
Q ss_pred eEEEEEccCCcEEEE
Q 033131 80 RVGHKVLDDGTRVRY 94 (126)
Q Consensus 80 rv~~~~~~dG~kvRv 94 (126)
+ .+++...+.|.
T Consensus 116 k---~~le~k~~~r~ 127 (145)
T 2zkr_t 116 K---KILERKAKSRQ 127 (145)
T ss_dssp H---HHHHC------
T ss_pred H---HHhhcccccch
Confidence 6 33555444454
No 9
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=99.87 E-value=1.2e-22 Score=148.58 Aligned_cols=66 Identities=23% Similarity=0.467 Sum_probs=60.3
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecCCCC
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEV 77 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~~~~ 77 (126)
|+|++||+|+||+|+|||++|+|++|++++++|+|||||+.+ ++ |+ ++|+|||+|||+|++|.+++
T Consensus 48 ~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K----~~-----G~--~~e~pIh~SNV~i~~~~~dk 113 (127)
T 3u5e_Y 48 LPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEK----VN-----GA--SVPINLHPSKLVITKLHLDK 113 (127)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEEEC----SS-----SC--EEECCBCGGGEEEEECCCCH
T ss_pred ccccCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEEEC----CC-----Cc--EEEcccchHHEEEEccccCc
Confidence 589999999999999999999999999999999999999986 32 32 88999999999999999864
No 10
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=99.87 E-value=1.7e-22 Score=149.14 Aligned_cols=66 Identities=26% Similarity=0.469 Sum_probs=60.5
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecCCCC
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEV 77 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~~~~ 77 (126)
|+|++||+|+||+|+|||++|+|++|++++++|+|||||+.+ ++ |+ ++|+|||+|||+|++|.+++
T Consensus 47 ~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K----~~-----G~--~~e~pIh~SNV~i~~~k~dk 112 (135)
T 4a17_S 47 MPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKNK----LN-----GA--PYQIPLSASQLVLTKLKLDK 112 (135)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCEEE----TT-----TE--EECCCBCGGGEEEEECCCCH
T ss_pred ccccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEEEc----CC-----CC--EEEcccchHHEEEEcccCCc
Confidence 589999999999999999999999999999999999999986 32 32 88999999999999999864
No 11
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=99.86 E-value=3.8e-22 Score=149.37 Aligned_cols=66 Identities=24% Similarity=0.497 Sum_probs=60.3
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecCCCC
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEV 77 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~~~~ 77 (126)
|+|++||+|+||+|+|||++|+|++|++++++|+|||||+++. + |. +.|+|||+|||+|++|.+++
T Consensus 47 ~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEGVN~~K~----~-----G~--~~eapIh~SNV~i~~~k~dk 112 (150)
T 3iz5_Y 47 IPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKV----N-----GS--TVNVGIHPSKVVVTKLKLDK 112 (150)
T ss_dssp EECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECT----T-----SC--EEECCBCGGGEEEEECCCCS
T ss_pred cccCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeCcEEEeC----C-----CC--EEecccchHHEEEEcccCCh
Confidence 5899999999999999999999999999999999999999972 2 22 78999999999999999865
No 12
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=98.23 E-value=1.6e-06 Score=54.17 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=32.7
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEe
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 36 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 36 (126)
.+.+||+|.|++|+++|..|.|.+++++++++.|.
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~ 38 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE
Confidence 57899999999999999999999999998888876
No 13
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=97.74 E-value=3.5e-05 Score=56.11 Aligned_cols=58 Identities=33% Similarity=0.371 Sum_probs=47.0
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceeeeEEEecCCcccCCceEEEEeecCcCCCeeeeecC
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKE 74 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv~p~ 74 (126)
.+.+||.|.|++|+++|-.|.|.+++.+++++.|.-.- .+. +.+..|++|+|..++.+
T Consensus 91 ~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~----------~gr-----~tpvel~~~~v~~i~~~ 148 (152)
T 3p8b_B 91 GLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFID----------AIV-----PIPVTIKGDYVRLISKL 148 (152)
T ss_dssp TCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESS----------CSS-----CCEEEEEGGGEEEEECC
T ss_pred cCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEe----------cce-----eEEEEECHHHEEEeccc
Confidence 46899999999999999999999999999998877211 122 34678899999998754
No 14
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=5.9e-05 Score=47.61 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=27.8
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCCeEEE
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 35 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~V 35 (126)
.+.+||.|.|++|+++|-.|+|.+|+.+ +|.|
T Consensus 7 ~f~~GD~V~V~~Gpf~g~~G~V~evd~e--~v~V 38 (59)
T 2e6z_A 7 GFQPGDNVEVCEGELINLQGKILSVDGN--KITI 38 (59)
T ss_dssp SCCTTSEEEECSSTTTTCEEEECCCBTT--EEEE
T ss_pred cCCCCCEEEEeecCCCCCEEEEEEEeCC--EEEE
Confidence 4789999999999999999999999875 5443
No 15
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=97.20 E-value=0.00045 Score=51.33 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=31.5
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEe
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 36 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 36 (126)
.+..||+|.|+.|+++|-.|.|.+++.+++++.|.
T Consensus 127 ~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~ 161 (181)
T 2jvv_A 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181)
T ss_dssp CCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 46799999999999999999999999988887665
No 16
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=97.16 E-value=0.00053 Score=45.04 Aligned_cols=38 Identities=37% Similarity=0.537 Sum_probs=29.3
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEeceee
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINL 40 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~ 40 (126)
+++.||-|.||+|++.|..|-|++|... .-+++-+.++
T Consensus 17 ~F~~GDHVkVi~G~~~getGlVV~v~~d-~v~v~SD~t~ 54 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFEGDTGLIVRVEEN-FVILFSDLTM 54 (69)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEECSS-CEEEEESSSC
T ss_pred eccCCCeEEEeccEEcCceEEEEEEeCC-EEEEEeCCCC
Confidence 5789999999999999999999999743 2334444443
No 17
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.84 E-value=0.0014 Score=47.11 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=30.4
Q ss_pred ccCCEEEEeecCCCCeEeEEEEEEccCCeEEEe
Q 033131 4 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 36 (126)
Q Consensus 4 ~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 36 (126)
++||+|+|+.|+++|..|++++++.++..++|+
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~ 104 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIV 104 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEE
Confidence 689999999999999999999999987777766
No 18
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=96.31 E-value=0.0052 Score=50.82 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=31.7
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEe
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 36 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 36 (126)
.+..||+|.|++|+++|..|.|.+++.+++++.|.
T Consensus 298 ~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~ 332 (352)
T 2xhc_A 298 GFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN 332 (352)
T ss_dssp CCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEE
Confidence 46689999999999999999999999988888775
No 19
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=95.82 E-value=0.0015 Score=51.73 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEe
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 36 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 36 (126)
.+..||.|.|++|+++|-.|.|.+|+++++++.|.
T Consensus 194 ~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~ 228 (248)
T 1m1h_A 194 EFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM 228 (248)
T ss_dssp -----------------------------------
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 36789999999999999999999999988877665
No 20
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=94.57 E-value=0.066 Score=38.65 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=31.2
Q ss_pred cccCCEEEEeecCCCCeEeEEEEEEccCCeEEEecee
Q 033131 3 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 39 (126)
Q Consensus 3 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN 39 (126)
+..|=.|.+..|++.|+...|..|.-+ |+|+|+|-.
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~-nrvLVdGp~ 42 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ-NRILIDGEH 42 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT-TEEEEEETT
T ss_pred eecceEEEEccCCccCCEEEEEEEecC-CeEEEeCCC
Confidence 456778999999999999999999754 799999876
No 21
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=93.12 E-value=0.079 Score=38.78 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=31.6
Q ss_pred cccCCEEEEeecCCCCeEeEEEEEEccCCeEEEecee
Q 033131 3 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 39 (126)
Q Consensus 3 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN 39 (126)
+..|-.|.+..|+|.|+...|++|.. .++|+|+|-.
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD-~~rVLVDGp~ 50 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIID-QKKVLIDGPK 50 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECS-SSEEEEECSS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEec-CCEEEEEcCC
Confidence 56888999999999999999999975 5799999863
No 22
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=93.06 E-value=0.078 Score=36.20 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=31.5
Q ss_pred cccCCEEEEeecCCCCeEeEEEEEEccCCeEEEecee
Q 033131 3 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 39 (126)
Q Consensus 3 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN 39 (126)
+..|-.|.+++|+|+|+.-.|+++. +.+.++|.|-.
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~i-D~~~vLV~gp~ 39 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDII-DDNFVLVTGPK 39 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEEC-SSSCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEe-CCCEEEEECCc
Confidence 6789999999999999999999997 45799998753
No 23
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=93.04 E-value=0.16 Score=37.41 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=34.4
Q ss_pred cccCCEEEEeecCCCCeEeEEEEEEccC------CeEEEeceeee
Q 033131 3 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLK 41 (126)
Q Consensus 3 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~------~~V~VeGvN~~ 41 (126)
+.+|=.|.|++|++.|+...|+++..+. ++++|.|+...
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdry 49 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERS 49 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEEC
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccC
Confidence 6788899999999999999999998764 79999998644
No 24
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=92.88 E-value=0.087 Score=38.36 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=32.1
Q ss_pred cccCCEEEEeecCCCCeEeEEEEEEccCCeEEEecee
Q 033131 3 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 39 (126)
Q Consensus 3 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN 39 (126)
+..|-.|.|..|+|.|+...|.+|.- .++|+|+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD-~~rvLVdG~~ 42 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD-QNRALVDAPD 42 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS-SSEEEEEETT
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC-CCeEEEeCCC
Confidence 56888999999999999999999975 4799999976
No 25
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.06 E-value=0.11 Score=34.76 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=31.4
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEecee
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 39 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN 39 (126)
-+..|-.|.+.+|+|+|+...|+++.. .++|+|.|-.
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD-~~~vlV~g~~ 39 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIID-KNFVLVTGAG 39 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECS-SSCEEEECCT
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcC-CCEEEEECCc
Confidence 367899999999999999999999864 4699998863
No 26
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.32 E-value=0.23 Score=32.51 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=24.7
Q ss_pred cCCEEEEeecCCCCeEeEEEEEEccCCeEEEe
Q 033131 5 AGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 36 (126)
Q Consensus 5 kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 36 (126)
.|-+|.|..|++||-.|.|..+... .+.||
T Consensus 20 iGktV~I~kGpyKG~~GiVkd~t~~--~~RVE 49 (71)
T 2e70_A 20 IGQTVRISQGPYKGYIGVVKDATES--TARVE 49 (71)
T ss_dssp TTSEEEECSSTTTTCEEEEEEECSS--CEEEE
T ss_pred CCCEEEEeccCCCCeEEEEEECCCC--eEEEE
Confidence 5779999999999999999888654 55555
No 27
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=82.34 E-value=0.76 Score=35.92 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=44.8
Q ss_pred cccCCEEEEeecCCCCeEeEEEEEEccCCeEEEece---eeeEEEecCCcccCCceEEEEeecCcCCCeee
Q 033131 3 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDI---NLKTKHVKKREEEEQGQIIKIEAPIHSSNVML 70 (126)
Q Consensus 3 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGv---N~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~L 70 (126)
|.+|..+++++|+++|+.-.+++++ +++.++|.|= |-+..+. -.+.-++...--|++|+|.+
T Consensus 75 i~pGtVlIil~Gr~~GKrvVfLkqL-~sgllLVtGP~~lNgVplrR-----~~qk~viaTstkIdIs~Vki 139 (219)
T 3iz5_G 75 ITPGTVLILLAGRYMGKRVVFLKQL-QSGLLLITGPFKINGVPIRR-----VNQAYVIATSTKVDISKVNV 139 (219)
T ss_dssp CSCCSCEECSSSSSSCCEECEEEES-SSSSEEECCCCSSSCCCCEE-----ESSSSCEECSCCCSCSSCCC
T ss_pred ccCCCEEEEeccccCCcEEEEEEec-CCCeEEEcCCccccCCccEE-----echhhEEecceEeecCcccc
Confidence 6789999999999999999999986 5789999883 3332111 11233445556788999887
No 28
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=79.57 E-value=2.1 Score=27.87 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=29.7
Q ss_pred cccCCEEEEeecC--CCCeEeEEEEEEccC----CeEEEeceee
Q 033131 3 VKAGDTVKVIAGC--DKGKIGEITKVFRHN----STVMVKDINL 40 (126)
Q Consensus 3 I~kGD~V~Vi~Gk--dKGK~G~V~~V~~~~----~~V~VeGvN~ 40 (126)
|.+|+.|.|++=. +-+.+|+|.+|+... --|..|++|-
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy 45 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNY 45 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCS
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEeccccc
Confidence 7899999999964 578999999998864 2455566664
No 29
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.50 E-value=2.7 Score=33.57 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=26.2
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCC
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNS 31 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~ 31 (126)
++..|-.+.|+.|.+-|.+|+|..+.+..+
T Consensus 174 kfe~Gnl~mvtgG~n~GriG~I~~ie~~~g 203 (265)
T 3iz6_D 174 KFDVGNVVMVTGGRNTGRVGVIKNREKHKG 203 (265)
T ss_dssp CCSTTCEEEECSSSSCSCEEEEEEEECCSS
T ss_pred EccCCCEEEEEcCCcceEEEEEEEEEEecC
Confidence 567899999999999999999999987543
No 30
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=77.59 E-value=2.6 Score=32.25 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=46.8
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCCeEEEec---eeeeEEEecCCcccCCceEEEEeecCcCCCeeee
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD---INLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLY 71 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeG---vN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~Lv 71 (126)
.|.+|..|++++|++.|+.-.+++.+. ++.++|-| +|-+... --.+.-++.-..-|++|+|.+-
T Consensus 44 si~pGtVlIiL~Gr~~GKrvV~LKql~-sgllLVtGP~~vn~vplr-----rvn~~~vi~TstkvDis~vki~ 110 (191)
T 4a18_E 44 DIAPGTVLILLAGRFRGKRVVFLKQLK-SGLLLVTGPYKVNGVPLK-----RVNQAYTLSTSTKVDLTGVNTA 110 (191)
T ss_dssp TCCTTEEEEECSSTTTTBEEEEEEECT-TSCEEEECCTTTSSCCSE-----EECGGGEEEEEEECCCTTCCGG
T ss_pred cccCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCccccCCceE-----EEeeeeEEeeeeEeeccccccc
Confidence 477899999999999999999999875 57888888 3311100 0123456677778999999873
No 31
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=76.40 E-value=1.7 Score=32.85 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=44.3
Q ss_pred cccCCEEEEeecCCCCeEeEEEEEEccCCeEEEec---eeeeEEEecCCcccCCceEEEEeecCcCCCeee
Q 033131 3 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD---INLKTKHVKKREEEEQGQIIKIEAPIHSSNVML 70 (126)
Q Consensus 3 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeG---vN~~kkh~k~~~~~~~ggi~~~e~pI~~SNV~L 70 (126)
|.+|..+++++|.++|+.-..++.. +++-++|-| +|-+..+- -.+.-++.-..-|++|+|.+
T Consensus 34 i~pGtvlIil~Gr~~GkrvVfLKql-~sglllVTGP~~lNgvplrR-----~~q~~vIaTstkidis~vki 98 (176)
T 3izc_G 34 LVPGTVLILLAGRFRGKRVVYLKHL-EDNTLLISGPFKVNGVPLRR-----VNARYVIATSTKVSVEGVNV 98 (176)
T ss_dssp CCCCSCEECCSSSSSCCCBEEEEES-SSSSEEEECCCSSSCCCCEE-----ESSSSCEECSCCCSSSSCCC
T ss_pred CCCCCEEEEeccccCCCEEEEEEec-CCCeEEEecCceecCCccee-----eecceEEeeeeeeecccccc
Confidence 6789999999999999999999987 467888877 33221110 11233455566789999987
No 32
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=73.52 E-value=0.0076 Score=43.62 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=21.2
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccC
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHN 30 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~ 30 (126)
.+..||+|.|++|+++|-.|.|.+++.++
T Consensus 109 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k 137 (162)
T 2oug_A 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA 137 (162)
T ss_dssp ------CTTHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCCCCEEEEcccCCCCcEEEEEEECCCC
Confidence 36789999999999999999999987664
No 33
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=72.82 E-value=3.8 Score=31.76 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=29.1
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccC----CeEEEe
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHN----STVMVK 36 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~----~~V~Ve 36 (126)
++..|-.++|+.|+.-|.+|+|..+.+.. +.|.|+
T Consensus 138 kf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~ 176 (213)
T 3kbg_A 138 KMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ 176 (213)
T ss_dssp CCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET
T ss_pred EcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE
Confidence 56789999999999999999999997643 456666
No 34
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=71.58 E-value=7.5 Score=30.93 Aligned_cols=35 Identities=26% Similarity=0.547 Sum_probs=27.7
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccC---CeEEEe
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVK 36 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~---~~V~Ve 36 (126)
++..|-.+.|+.|.+-|.+|+|.++.+.. +.|.|+
T Consensus 176 kfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vk 213 (260)
T 2xzm_W 176 HLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVK 213 (260)
T ss_dssp BCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEE
T ss_pred EecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEE
Confidence 56789999999999999999999865543 345544
No 35
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.57 E-value=3.2 Score=32.72 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=28.7
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccC----CeEEEec
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHN----STVMVKD 37 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~----~~V~VeG 37 (126)
++..|-.+.|+.|+.-|.+|+|..+.+.. +.|.|++
T Consensus 178 kf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d 217 (243)
T 3j20_E 178 PFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIED 217 (243)
T ss_dssp ECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEE
T ss_pred eccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEc
Confidence 46689999999999999999999887532 4566653
No 36
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=66.47 E-value=3.3 Score=33.03 Aligned_cols=30 Identities=37% Similarity=0.563 Sum_probs=24.8
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccCC
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNS 31 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~ 31 (126)
++..|-.+.|+.|.+-|.+|+|..+.+..+
T Consensus 174 kfe~Gnl~mvtgG~n~GriG~I~~ie~~~g 203 (261)
T 3u5c_E 174 KFDAGKLVYVTGGRNLGRIGTIVHKERHDG 203 (261)
T ss_dssp CCCSSCCEEECSSTTTTCBCCCCEEECCTT
T ss_pred EccCCCEEEEEcCCcceEEEEEEEEEEecC
Confidence 566788899999999999999998876543
No 37
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=60.24 E-value=16 Score=25.68 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=16.2
Q ss_pred CcccCCEEEEeecCC-CCeEeEEEEE
Q 033131 2 HVKAGDTVKVIAGCD-KGKIGEITKV 26 (126)
Q Consensus 2 ~I~kGD~V~Vi~Gkd-KGK~G~V~~V 26 (126)
.|+.||.|.+..|.. .=..-+|.+|
T Consensus 91 ~l~~GD~v~~~~~~~~~~~~~~V~~v 116 (145)
T 1at0_A 91 RIEEKNQVLVRDVETGELRPQRVVKV 116 (145)
T ss_dssp GCCTTCEEEEECTTTCCEEEEEEEEE
T ss_pred HCcCCCEEEEecCCCCCEEEEEEEEE
Confidence 578999999998732 1123455555
No 38
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=57.30 E-value=12 Score=21.35 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=12.1
Q ss_pred CCcccCCEEEEeecCC
Q 033131 1 MHVKAGDTVKVIAGCD 16 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gkd 16 (126)
+.+++||.|.|+.-.+
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (58)
T 1zuy_A 18 LPLKKGDVIYITREEP 33 (58)
T ss_dssp CCBCTTCEEEEEEECT
T ss_pred CCCCCCCEEEEEEecC
Confidence 3578999999987543
No 39
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=55.04 E-value=19 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.2
Q ss_pred cccCCEEEEeecC--CCCeEeEEEEEEcc
Q 033131 3 VKAGDTVKVIAGC--DKGKIGEITKVFRH 29 (126)
Q Consensus 3 I~kGD~V~Vi~Gk--dKGK~G~V~~V~~~ 29 (126)
|.+||.|.|++=. .-..+|+|.+|+..
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~s 29 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQT 29 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECCC
T ss_pred CCCCCEEEEccccceeecCcceEEEEecC
Confidence 5799999999963 56789999999986
No 40
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=55.01 E-value=9.4 Score=21.97 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=11.7
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 19 Ls~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 19 LAFKRGDVITLINKD 33 (58)
T ss_dssp CCBCTTCEEEEEECS
T ss_pred cCCCCCCEEEEEEec
Confidence 357899999998853
No 41
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=54.16 E-value=9.8 Score=22.09 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=11.4
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.+.|+.-.
T Consensus 21 Ls~~~Gd~i~v~~~~ 35 (59)
T 2g6f_X 21 LSFSKGDVIHVTRVE 35 (59)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred cCCCCCCEEEEEEec
Confidence 357889999988743
No 42
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=53.70 E-value=9.6 Score=23.18 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=11.6
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 20 Lsf~~Gd~i~v~~~~ 34 (68)
T 2ew3_A 20 LGFKEGDIITLTNQI 34 (68)
T ss_dssp CCBCTTCEEEEEEES
T ss_pred cCCCCCCEEEEEEec
Confidence 357899999998843
No 43
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=52.08 E-value=0.92 Score=33.05 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=32.3
Q ss_pred cccCCEEEEeecCCCCeEeEEEEEEccC------CeEEEeceeee
Q 033131 3 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLK 41 (126)
Q Consensus 3 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~------~~V~VeGvN~~ 41 (126)
+++|=.|.|++|.+.|+...|++.+.+. +.++|-|+...
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdry 49 (136)
T 3izc_a 5 LKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERY 49 (136)
T ss_dssp CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSS
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccC
Confidence 6789999999999999999999886554 27889997644
No 44
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=50.06 E-value=12 Score=22.37 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=11.4
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.+.|+.-.
T Consensus 20 Lsf~~Gd~i~v~~~~ 34 (67)
T 2bzy_A 20 LALEVGDIVKVTRMN 34 (67)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred cccCCCCEEEEEEec
Confidence 357889999988743
No 45
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=50.02 E-value=17 Score=20.81 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=12.0
Q ss_pred CCcccCCEEEEeecCC
Q 033131 1 MHVKAGDTVKVIAGCD 16 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gkd 16 (126)
+.+++||.|.|+.-.+
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 18 ITITPGDKISLVARDT 33 (58)
T ss_dssp CCBCTTCCEEEEECCS
T ss_pred ccCCCCCEEEEeEcCC
Confidence 3578899999987543
No 46
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=49.56 E-value=13 Score=21.90 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.+.|+.-.
T Consensus 23 Ls~~~Gd~i~v~~~~ 37 (64)
T 2ak5_A 23 LSFSKGDVIHVTRVE 37 (64)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred ccCCCCCEEEEeEec
Confidence 357889999988743
No 47
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=48.93 E-value=19 Score=21.43 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=11.4
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (69)
T 1ruw_A 20 LPLKKGDIVFISRDE 34 (69)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred ccCCCCCEEEEEEec
Confidence 357889999998743
No 48
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=48.32 E-value=26 Score=19.75 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=11.7
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 17 Ls~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 17 ISIDPGDIITVIRGD 31 (54)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred ccCCCCCEEEEEEec
Confidence 357899999998754
No 49
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.83 E-value=13 Score=22.81 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=10.2
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 31 Lsf~~Gd~i~v~~ 43 (75)
T 2ege_A 31 LALRAGDVVMVYG 43 (75)
T ss_dssp CCBCTTCEEEEES
T ss_pred ceECCCCEEEEeE
Confidence 3578899998885
No 50
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=47.79 E-value=14 Score=21.43 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.+.|+.-.
T Consensus 22 Ls~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 22 LSFNANDIIDIIKED 36 (60)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred cCCCCCCEEEEEEec
Confidence 357889999988743
No 51
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=47.60 E-value=16 Score=26.06 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=20.3
Q ss_pred CcccCCEEEEee----------cCCCCeEeEEEEEE
Q 033131 2 HVKAGDTVKVIA----------GCDKGKIGEITKVF 27 (126)
Q Consensus 2 ~I~kGD~V~Vi~----------GkdKGK~G~V~~V~ 27 (126)
.+..||+|.|.. |.-+|++|.|..+.
T Consensus 36 rF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~ 71 (126)
T 2zzd_A 36 KFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV 71 (126)
T ss_dssp SSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE
T ss_pred ccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe
Confidence 478999999965 44579999997765
No 52
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=47.31 E-value=14 Score=21.44 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=10.9
Q ss_pred CcccCCEEEEeecC
Q 033131 2 HVKAGDTVKVIAGC 15 (126)
Q Consensus 2 ~I~kGD~V~Vi~Gk 15 (126)
.+++||.+.|+.-.
T Consensus 22 s~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 22 NFKAGDVIFLLSRI 35 (60)
T ss_dssp CBCTTCEEEEEEEC
T ss_pred cCCCCCEEEEEEeC
Confidence 57889999988743
No 53
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=47.11 E-value=15 Score=21.41 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=10.9
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 23 LSFKKGASLLLYHR 36 (60)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 35788999998874
No 54
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.72 E-value=14 Score=22.67 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=10.8
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (78)
T 2yuo_A 24 LGFRKNDIITIIS 36 (78)
T ss_dssp CCBCTTCEEEEEE
T ss_pred ccCCCCCEEEEEE
Confidence 3578999999987
No 55
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=46.54 E-value=20 Score=20.59 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=10.6
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 20 Ls~~~Gd~i~v~~~ 33 (60)
T 2x3w_D 20 LSFKAGDELTKLGE 33 (60)
T ss_dssp CCBCTTCEEEECSC
T ss_pred ccCCCCCEEEEEEc
Confidence 35788999888863
No 56
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=46.14 E-value=20 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=25.7
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEE
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVM 34 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~ 34 (126)
|+++.||.|.+..|...=-.++|.++.++.-.+.
T Consensus 32 LR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~ 65 (251)
T 4e8b_A 32 LRMGPGQALQLFDGSNQVFDAEITSASKKSVEVK 65 (251)
T ss_dssp SCCCSCCEEEEECSSSEEEEEEEEEECSSCEEEE
T ss_pred CcCCCCCEEEEEeCCCcEEEEEEEEeecceEEEE
Confidence 5789999999999875545688988876654443
No 57
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.03 E-value=17 Score=21.67 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=10.6
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 1x2k_A 24 LYFEEGDIIYITDM 37 (68)
T ss_dssp CCCCSSCEEEEEEC
T ss_pred ccCCCCCEEEEEEc
Confidence 35788898888864
No 58
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=46.01 E-value=0.96 Score=32.97 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=31.9
Q ss_pred cccCCEEEEeecCCCCeEeEEEEEEccC------CeEEEeceeee
Q 033131 3 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLK 41 (126)
Q Consensus 3 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~------~~V~VeGvN~~ 41 (126)
+++|=.|.|++|.+.|+...|++.+.+. +.++|-|+...
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdry 49 (136)
T 3iz5_a 5 LKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKY 49 (136)
T ss_dssp CCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTT
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccC
Confidence 6789999999999999999998886554 26888887543
No 59
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=45.86 E-value=15 Score=22.30 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.+.|+.-.
T Consensus 30 Ls~~~Gd~i~v~~~~ 44 (73)
T 3c0c_A 30 LGFREGDLITLTNQI 44 (73)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred ccCcCCCEEEEEEec
Confidence 357889999988743
No 60
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=45.86 E-value=12 Score=22.46 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=9.9
Q ss_pred CcccCCEEEEeec
Q 033131 2 HVKAGDTVKVIAG 14 (126)
Q Consensus 2 ~I~kGD~V~Vi~G 14 (126)
.+++||.|.|+.-
T Consensus 26 s~~~Gd~i~v~~~ 38 (67)
T 2eyx_A 26 ALEVGELVKVTKI 38 (67)
T ss_dssp CBCSSEEEEEEEE
T ss_pred ccCCCCEEEEEEe
Confidence 5778888888764
No 61
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=45.67 E-value=19 Score=20.97 Aligned_cols=14 Identities=7% Similarity=0.501 Sum_probs=11.1
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (62)
T 2iim_A 23 LGFEKGEQLRILEQ 36 (62)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEc
Confidence 35788999999874
No 62
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=45.18 E-value=21 Score=27.53 Aligned_cols=35 Identities=11% Similarity=0.289 Sum_probs=25.6
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEE
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 35 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~V 35 (126)
|+++.||.|.|..|...=-.++|.++.++.-.+.+
T Consensus 34 LRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i 68 (257)
T 1vhy_A 34 LRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEI 68 (257)
T ss_dssp SCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEE
T ss_pred hccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEE
Confidence 57899999999988644455888888766544443
No 63
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=44.84 E-value=14 Score=22.48 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=10.6
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (74)
T 1j3t_A 27 LNFSKHDIITVLEQ 40 (74)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEec
Confidence 35788999888863
No 64
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=44.60 E-value=19 Score=21.30 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=10.9
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 2dl3_A 24 LPLQKGDIVYIYKQ 37 (68)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred ccCCCCCEEEEeEe
Confidence 35788999998874
No 65
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=44.39 E-value=18 Score=22.25 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=11.4
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.=.
T Consensus 30 Ls~~~Gd~i~vl~~~ 44 (79)
T 1uhc_A 30 LSVSANQKLKILEFK 44 (79)
T ss_dssp CCBCTTCEEEEEESC
T ss_pred cCCCCCCEEEEEECC
Confidence 357889999998743
No 66
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.30 E-value=17 Score=22.05 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=10.1
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 26 Ls~~~Gd~i~v~~ 38 (72)
T 2dl8_A 26 LSFKKGASLLLYQ 38 (72)
T ss_dssp CCBCTTCEEEEEE
T ss_pred eccCCCCEEEEEe
Confidence 3578889888886
No 67
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=43.49 E-value=18 Score=20.93 Aligned_cols=13 Identities=15% Similarity=0.667 Sum_probs=10.3
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.+.|+.
T Consensus 22 Ls~~~Gd~i~v~~ 34 (63)
T 3eg3_A 22 LSITKGEKLRVLG 34 (63)
T ss_dssp CCBCTTCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 3578899998887
No 68
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=42.90 E-value=31 Score=21.03 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.4
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 35 Lsf~~Gd~i~v~~~ 48 (78)
T 1k1z_A 35 LRLNPGDIVELTKA 48 (78)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEc
Confidence 35789999999886
No 69
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=42.70 E-value=21 Score=21.35 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=10.4
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.+.|+.
T Consensus 28 Ls~~~Gd~i~v~~ 40 (71)
T 1csk_A 28 LPFCKGDVLTIVA 40 (71)
T ss_dssp CCBCTTCEEEEEE
T ss_pred CCCCCCCEEEEeE
Confidence 3578899988887
No 70
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=42.56 E-value=19 Score=27.70 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=20.1
Q ss_pred CcccCCEEEEee----------cCCCCeEeEEEEEE
Q 033131 2 HVKAGDTVKVIA----------GCDKGKIGEITKVF 27 (126)
Q Consensus 2 ~I~kGD~V~Vi~----------GkdKGK~G~V~~V~ 27 (126)
+++.||+|.|.. |.-+|++|+|..+.
T Consensus 130 ~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 130 RFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDH 165 (219)
T ss_dssp CCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEE
T ss_pred CCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEe
Confidence 578999999954 44579999997664
No 71
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=42.20 E-value=27 Score=27.12 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccC
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHN 30 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~ 30 (126)
|+++.||.|.|..|...=-.++|.++.++.
T Consensus 35 LRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~ 64 (268)
T 1vhk_A 35 MRMNEGDQIICCSQDGFEAKCELQSVSKDK 64 (268)
T ss_dssp TCCCTTCEEEEECTTSCEEEEEEEEECSSE
T ss_pred hcCCCCCEEEEEeCCCCEEEEEEEEecCCE
Confidence 578999999999887665668888886654
No 72
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=41.96 E-value=25 Score=25.93 Aligned_cols=46 Identities=26% Similarity=0.491 Sum_probs=31.0
Q ss_pred cccCCEEEEee------c----CCCCeEeEEEEEEcc----------CCeEEEeceeeeEEEecCC
Q 033131 3 VKAGDTVKVIA------G----CDKGKIGEITKVFRH----------NSTVMVKDINLKTKHVKKR 48 (126)
Q Consensus 3 I~kGD~V~Vi~------G----kdKGK~G~V~~V~~~----------~~~V~VeGvN~~kkh~k~~ 48 (126)
.++||.|-|.. | .+-|++|.|..|... +++++..-+|+.-.|++++
T Consensus 34 yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~s 99 (157)
T 4a17_P 34 YKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRPS 99 (157)
T ss_dssp CCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred hcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeECCEeeeeEEEEeHHHcccc
Confidence 57899998842 2 256899999765433 3555566677777777654
No 73
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=41.80 E-value=19 Score=21.89 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.1
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.=
T Consensus 19 Ls~~~Gd~i~vl~~ 32 (69)
T 2ydl_A 19 LTIKEGDIVTLINK 32 (69)
T ss_dssp CCBCTTCEEEEEES
T ss_pred cccCCCCEEEEEEc
Confidence 36789999999864
No 74
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=41.75 E-value=34 Score=20.27 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 27 Lsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 27 LRLNPGDIVELTKA 40 (70)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCcCCCCEEEEEeC
Confidence 35789999999885
No 75
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.68 E-value=22 Score=22.01 Aligned_cols=14 Identities=43% Similarity=0.755 Sum_probs=11.1
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (81)
T 2ysq_A 27 LAFKAGDVIKVLDA 40 (81)
T ss_dssp CCCCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEE
Confidence 35789999999874
No 76
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=41.57 E-value=21 Score=27.69 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=20.2
Q ss_pred CcccCCEEEEee----------cCCCCeEeEEEEEE
Q 033131 2 HVKAGDTVKVIA----------GCDKGKIGEITKVF 27 (126)
Q Consensus 2 ~I~kGD~V~Vi~----------GkdKGK~G~V~~V~ 27 (126)
+++.||+|.|.. |.-+|++|+|..+.
T Consensus 141 ~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 141 RFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVY 176 (229)
T ss_dssp SCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEE
T ss_pred CCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEe
Confidence 578999999954 44579999997763
No 77
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=41.49 E-value=41 Score=27.05 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=26.3
Q ss_pred cCCEEEEeecCCCCeEeEEEEEEccCCeEEEe
Q 033131 5 AGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 36 (126)
Q Consensus 5 kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 36 (126)
.|.+..|++|.-||..|.|+-=.---+.|+|+
T Consensus 86 iGN~A~VvSG~AKG~~G~VtGkHGGieHVlV~ 117 (284)
T 3dcl_A 86 IGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVH 117 (284)
T ss_dssp BTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred cCceeEEeecccCCCcceEecccCCeeeEEEE
Confidence 48899999999999999998665555667765
No 78
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=41.36 E-value=25 Score=27.15 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=24.8
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEE
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVM 34 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~ 34 (126)
++++.||.|.+..|...--.++|.++.++.-.+.
T Consensus 31 LRl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~ 64 (257)
T 3kw2_A 31 LRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVS 64 (257)
T ss_dssp SCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEE
T ss_pred ccCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEE
Confidence 4788999999999874434588888876544443
No 79
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=41.34 E-value=26 Score=26.79 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=25.7
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEE
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 35 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~V 35 (126)
|+++.||.|.+..|...=-.++|.++.++.-.+.+
T Consensus 39 LRl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i 73 (234)
T 1z85_A 39 VRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKI 73 (234)
T ss_dssp TTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEE
T ss_pred hcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEE
Confidence 57899999999988755556788888766544433
No 80
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=41.12 E-value=40 Score=21.48 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=32.9
Q ss_pred cccCCEEEEeecC--CCCeEeEEEEEEccCCeEEEeceeee
Q 033131 3 VKAGDTVKVIAGC--DKGKIGEITKVFRHNSTVMVKDINLK 41 (126)
Q Consensus 3 I~kGD~V~Vi~Gk--dKGK~G~V~~V~~~~~~V~VeGvN~~ 41 (126)
|.+|-.|.|+.-. +-|-+|.|.+|...+--|+.||=|--
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWD 42 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWD 42 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCE
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCce
Confidence 7799999999885 67999999999887778898986644
No 81
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=40.90 E-value=20 Score=21.02 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=10.6
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (65)
T 1w1f_A 24 LSFKKGEKMKVLEE 37 (65)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred CCCCCCCEEEEEEc
Confidence 35788998888773
No 82
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=40.06 E-value=21 Score=21.50 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=10.9
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 26 Ls~~~Gd~i~v~~~ 39 (73)
T 2k9g_A 26 LTIKEGDIVTLINK 39 (73)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred eeECCCCEEEEEEC
Confidence 35788999998874
No 83
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=39.58 E-value=25 Score=21.06 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=10.2
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.+.|+.
T Consensus 25 Ls~~~Gd~i~v~~ 37 (69)
T 1uhf_A 25 LTFTEGEEILVTQ 37 (69)
T ss_dssp CCBCTTCEEEECE
T ss_pred cCCCCCCEEEEEE
Confidence 3578899998876
No 84
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=39.53 E-value=25 Score=21.47 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=11.2
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 28 Ls~~~Gd~i~v~~~~ 42 (73)
T 2ebp_A 28 LKLKKGDIIDIISKP 42 (73)
T ss_dssp CCBCSSCEEEEEECC
T ss_pred cCCCCCCEEEEEEeC
Confidence 357889999888743
No 85
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=38.86 E-value=26 Score=23.78 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=25.0
Q ss_pred cccCCEEEEee------c----CCCCeEeEEEEEEccCCeEEEe
Q 033131 3 VKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMVK 36 (126)
Q Consensus 3 I~kGD~V~Vi~------G----kdKGK~G~V~~V~~~~~~V~Ve 36 (126)
.++||.|-|.- | .+-|++|.|..+...--.|+|.
T Consensus 34 yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vn 77 (96)
T 1vq8_Q 34 FDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIV 77 (96)
T ss_dssp CCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEE
T ss_pred cCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEe
Confidence 57899998873 5 2458999999887765555554
No 86
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.36 E-value=19 Score=22.10 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=10.0
Q ss_pred CcccCCEEEEeec
Q 033131 2 HVKAGDTVKVIAG 14 (126)
Q Consensus 2 ~I~kGD~V~Vi~G 14 (126)
.+++||.+.|+.-
T Consensus 28 s~~~Gd~i~v~~~ 40 (76)
T 2epd_A 28 SFRRGDVLRLHER 40 (76)
T ss_dssp EECTTCEEEEEEE
T ss_pred CCCCCCEEEEEEe
Confidence 4678888888864
No 87
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.29 E-value=21 Score=21.29 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=10.7
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.=
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 2dmo_A 24 LQVMPGNIVFVLKK 37 (68)
T ss_dssp CCCCTTCEEEECEE
T ss_pred CCCCCCCEEEEEEe
Confidence 35788999988863
No 88
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.24 E-value=23 Score=21.34 Aligned_cols=14 Identities=7% Similarity=0.432 Sum_probs=11.1
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 25 LSFPEGAIIRILNK 38 (73)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEC
Confidence 35789999999874
No 89
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=37.80 E-value=26 Score=27.06 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=20.4
Q ss_pred CcccCCEEEEee----------cCCCCeEeEEEEEE
Q 033131 2 HVKAGDTVKVIA----------GCDKGKIGEITKVF 27 (126)
Q Consensus 2 ~I~kGD~V~Vi~----------GkdKGK~G~V~~V~ 27 (126)
+++.||+|.|.. |.-+||+|+|..+.
T Consensus 138 ~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~ 173 (226)
T 1ugp_B 138 KFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHH 173 (226)
T ss_dssp SCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEE
T ss_pred cCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEe
Confidence 578999999965 34578999998765
No 90
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=37.30 E-value=30 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.9
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEcc
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRH 29 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~ 29 (126)
+++.||.|.+ -|..|.|.++.-.
T Consensus 128 pf~vGD~I~i-----~~~~G~V~~I~l~ 150 (285)
T 3udc_A 128 QFSVGDYVTI-----NGISGTVEEIGLR 150 (285)
T ss_dssp SCCTTCEEEE-----TTEEEEEEEECSS
T ss_pred CccCCCEEEE-----CCEEEEEEEeeee
Confidence 6899999998 3688999988643
No 91
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=37.16 E-value=29 Score=21.22 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=10.6
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 22 Ls~~~Gd~i~v~~~ 35 (73)
T 2lcs_A 22 LRLAEGDIVFISYK 35 (73)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCcCCCEEEEEEE
Confidence 35788999988763
No 92
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=36.62 E-value=18 Score=21.73 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=10.9
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (65)
T 2fei_A 18 LELKVGDIIDINEE 31 (65)
T ss_dssp CCCCTTCEEECCCC
T ss_pred cCCCCCCEEEEEEe
Confidence 35789999998863
No 93
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.44 E-value=36 Score=20.84 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=10.8
Q ss_pred CcccCCEEEEeecC
Q 033131 2 HVKAGDTVKVIAGC 15 (126)
Q Consensus 2 ~I~kGD~V~Vi~Gk 15 (126)
.+++||.|.|+.-.
T Consensus 35 sf~~Gd~i~v~~~~ 48 (80)
T 2d8h_A 35 NFQAGDRITVISKT 48 (80)
T ss_dssp EECTTCEEEEEECC
T ss_pred eEcCCCEEEEeECc
Confidence 57889998888754
No 94
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=36.41 E-value=25 Score=20.02 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=10.3
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 18 Ls~~~Gd~i~v~~ 30 (59)
T 1yn8_A 18 LRLAEGDIVFISY 30 (59)
T ss_dssp CCBCTTCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 3578899998876
No 95
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=36.00 E-value=25 Score=20.28 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=10.8
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (60)
T 1i07_A 18 LSVMKDDVLEILDD 31 (60)
T ss_dssp CCBCTTCEEEECGG
T ss_pred ccCCCCCEEEEEEc
Confidence 35788999999863
No 96
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.96 E-value=24 Score=22.05 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.5
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.+.|+.
T Consensus 25 Lsf~~Gd~i~v~~ 37 (85)
T 2dlp_A 25 LSFHRGDLIKLLP 37 (85)
T ss_dssp CCBCTTCEEEECC
T ss_pred ccCcCCCEEEEEE
Confidence 3578899999986
No 97
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.71 E-value=26 Score=21.48 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=10.7
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 34 Ls~~~Gd~i~v~~~ 47 (79)
T 1x69_A 34 ISFDPDDIITNIEM 47 (79)
T ss_dssp CCCCTTCEEEEEEE
T ss_pred cCcCCCCEEEEeEe
Confidence 35788999988864
No 98
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=35.48 E-value=38 Score=20.18 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=9.9
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 24 Lsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 24 ISFEQNEILQVSD 36 (70)
T ss_dssp CCBCTTCEEEEEC
T ss_pred ccCCCCCEEEEEE
Confidence 3578899888875
No 99
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.94 E-value=47 Score=20.07 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=10.3
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (77)
T 2enm_A 27 LTVTEGEIITVTNP 40 (77)
T ss_dssp CCCCTTCEEEEEES
T ss_pred ecCCCCCEEEEeEc
Confidence 35778888888874
No 100
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=34.92 E-value=45 Score=25.13 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=24.9
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCCeEEE
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 35 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~V 35 (126)
|+++.||.|.+..|.. =-.++|.++.+ .-.+.+
T Consensus 27 lRl~~Gd~v~l~dg~g-~~~a~i~~~~~-~~~~~i 59 (228)
T 1v6z_A 27 LRARVGDRFTVFDGER-EALAEVVDLGP-PLRYRV 59 (228)
T ss_dssp SCCCTTCEEEEECSSC-EEEEEEEECCS-SCEEEE
T ss_pred ccCCCCCEEEEEeCCc-EEEEEEEECCC-eEEEEE
Confidence 5789999999999876 55588888876 544444
No 101
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=34.38 E-value=26 Score=21.66 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=10.5
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.+.|+.
T Consensus 34 Lsf~~Gd~i~Vl~ 46 (72)
T 2l0a_A 34 LTFKAGEIITVLD 46 (72)
T ss_dssp CCBCTTCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 3578899999987
No 102
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=34.37 E-value=27 Score=21.65 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=9.8
Q ss_pred CcccCCEEEEeec
Q 033131 2 HVKAGDTVKVIAG 14 (126)
Q Consensus 2 ~I~kGD~V~Vi~G 14 (126)
.+++||.+.|+.-
T Consensus 43 s~~~Gd~i~v~~~ 55 (86)
T 2oi3_A 43 SFQKGDQMVVLEE 55 (86)
T ss_dssp CCCTTCEEEEEEE
T ss_pred cCCCCCEEEEEEc
Confidence 5678888888763
No 103
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=34.25 E-value=40 Score=20.66 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=11.5
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.+.|+.=.
T Consensus 25 Lsf~~Gd~i~Vl~~~ 39 (69)
T 1nm7_A 25 VALKKGDLMAILSKK 39 (69)
T ss_dssp CCCCTTCEEEECCSS
T ss_pred cCCCCCCEEEEEecC
Confidence 357899999998743
No 104
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.89 E-value=28 Score=20.76 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=10.0
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (70)
T 2da9_A 24 LTIKEGDIVTLINK 37 (70)
T ss_dssp CCCCTTEEEEEEEC
T ss_pred eeEcCCCEEEEEEC
Confidence 35678888888764
No 105
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.85 E-value=21 Score=21.31 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=10.8
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 25 Ls~~~Gd~i~v~~~ 38 (70)
T 2ega_A 25 LSLQAGEVVDVIEK 38 (70)
T ss_dssp CCCCTTCBCEEEEE
T ss_pred ccCCCCCEEEEEEc
Confidence 35788999988874
No 106
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=33.13 E-value=53 Score=22.53 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=20.6
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEccC
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHN 30 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~ 30 (126)
.|.+||.|.|---++-...|.|..+++..
T Consensus 70 ~i~~GD~V~ve~~~~~~~kG~I~~~~~r~ 98 (117)
T 2oqk_A 70 WVNPGDIVLVSLRDFQDSKGDIILKYTPD 98 (117)
T ss_dssp CCCTTCEEEEEECTTCTTEEEEEEECCHH
T ss_pred cCCCCCEEEEEEEcCCCCeEEEEEEechH
Confidence 46799999986544334478888887654
No 107
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=33.04 E-value=36 Score=19.40 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=12.2
Q ss_pred CCcccCCEEEEeecCC
Q 033131 1 MHVKAGDTVKVIAGCD 16 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gkd 16 (126)
+.+++||.|.|+.-.+
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (58)
T 2bz8_A 18 LTISVGEIITNIRKED 33 (58)
T ss_dssp CCBCTTCEEEEEECCT
T ss_pred eeECCCCEEEEEEeCC
Confidence 3578999999988543
No 108
>3gqh_A Preneck appendage protein; beta barrel, viral protein; 1.80A {Bacillus phage PHI29} PDB: 3gqk_A*
Probab=32.71 E-value=13 Score=27.69 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=27.0
Q ss_pred eeecCCCCeeeEEEEEccCCcEEEEEcccCcccc
Q 033131 70 LYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 103 (126)
Q Consensus 70 Lv~p~~~~~~rv~~~~~~dG~kvRv~k~sg~~i~ 103 (126)
++...+|+|.++||-++-+|.|+|.+.....+|.
T Consensus 5 ~FEs~dG~~I~~Gy~Vtl~g~KIR~A~~~D~ilG 38 (163)
T 3gqh_A 5 YFESLGGQVIETGYLVTLEKGKIRKAEKGEKIIG 38 (163)
T ss_dssp EEEBTTSSCCCTTCEEEEETTEEEECCTTCCCCE
T ss_pred heeccCCCcccCCeEEEecCCEEEecCCCCcEEE
Confidence 4566788999999887778999999997766543
No 109
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=32.71 E-value=38 Score=20.06 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=9.9
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (68)
T 1wxt_A 24 LTVVQGEKLEVLD 36 (68)
T ss_dssp CCBCTTCEEEEEE
T ss_pred CCCCCCCEEEEEE
Confidence 3577888888886
No 110
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=32.26 E-value=39 Score=20.56 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=11.1
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 32 Ls~~~Gd~i~v~~~~ 46 (80)
T 2v1r_A 32 VALKKGDLMAILSKK 46 (80)
T ss_dssp CCBCTTCEEEEEEEE
T ss_pred ecCCCCCEEEEEECC
Confidence 357888988888743
No 111
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=31.86 E-value=34 Score=25.98 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=19.4
Q ss_pred CcccCCEEEEeec----------CCCCeEeEEEEEE
Q 033131 2 HVKAGDTVKVIAG----------CDKGKIGEITKVF 27 (126)
Q Consensus 2 ~I~kGD~V~Vi~G----------kdKGK~G~V~~V~ 27 (126)
.++.||+|.|..= .-+|++|+|..+.
T Consensus 118 ~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~ 153 (206)
T 4fm4_B 118 GFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGIS 153 (206)
T ss_dssp CCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEC
T ss_pred CCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEe
Confidence 3678999999752 3468899988763
No 112
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=31.27 E-value=20 Score=28.78 Aligned_cols=45 Identities=16% Similarity=0.421 Sum_probs=30.5
Q ss_pred CeeeeecCCCC-eeeEEEEEccCCcEEEEEcccCcccccc-----hhhhhhhhc
Q 033131 67 NVMLYSKEMEV-ASRVGHKVLDDGTRVRYLIKTGEIIDSA-----ENWKKLKEA 114 (126)
Q Consensus 67 NV~Lv~p~~~~-~~rv~~~~~~dG~kvRv~k~sg~~i~~p-----~~~~~~~k~ 114 (126)
|+.+.||+|+. ++.+-+.+ ..|. -||..||.+|..- .-|.-+-.|
T Consensus 19 ~~~~~Cp~C~~~~~~lv~D~-~~G~--~vC~~CGlVl~e~~iD~g~EWR~f~~d 69 (345)
T 4bbr_M 19 NIVLTCPECKVYPPKIVERF-SEGD--VVCALCGLVLSDKLVDTRSEWRTFSND 69 (345)
T ss_dssp ---CCCSSCCCSSCCEEEEG-GGTE--EEETTTCBEEESCCBCHHHHHTTTSCS
T ss_pred ccCCcCCCCCCCCCceeEEC-CCCc--EEeCCCCCCccCcccccCccccCCCcc
Confidence 55678999987 67776653 5675 8999999987531 247777654
No 113
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=30.69 E-value=38 Score=20.09 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=9.8
Q ss_pred CcccCCEEEEeec
Q 033131 2 HVKAGDTVKVIAG 14 (126)
Q Consensus 2 ~I~kGD~V~Vi~G 14 (126)
.+++||.+.|+.-
T Consensus 24 s~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 24 NFEKGETMEVIEK 36 (71)
T ss_dssp CCCSSCCEEEEEC
T ss_pred cCCCCCEEEEEEC
Confidence 5678888888774
No 114
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=30.68 E-value=36 Score=20.64 Aligned_cols=17 Identities=35% Similarity=0.853 Sum_probs=12.7
Q ss_pred CCcccCCEEEEeecCCC
Q 033131 1 MHVKAGDTVKVIAGCDK 17 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdK 17 (126)
+.+++||.|.|+.-.+-
T Consensus 23 Ls~~~Gd~i~v~~~~~~ 39 (65)
T 2lj0_A 23 LELRDGDIVDVMEKCDD 39 (65)
T ss_dssp CCBCTTCEEEEEEECTT
T ss_pred cCCCCCCEEEEeEeCCC
Confidence 46889999999864443
No 115
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=30.23 E-value=42 Score=21.06 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 32 Lsf~~Gd~i~v~~~~ 46 (92)
T 1jqq_A 32 VALKKGDLMAILSKK 46 (92)
T ss_dssp CCBCTTCEEEEEEEE
T ss_pred cCCCCCCEEEEEECC
Confidence 357889999888753
No 116
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=30.23 E-value=41 Score=19.13 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=11.2
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 17 Ls~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 17 LTFVENDKIINIEF 30 (58)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cccCCCCEEEEEEe
Confidence 35789999999884
No 117
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.89 E-value=59 Score=19.69 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.3
Q ss_pred CcccCCEEEEeec
Q 033131 2 HVKAGDTVKVIAG 14 (126)
Q Consensus 2 ~I~kGD~V~Vi~G 14 (126)
.+++||.|.|+.-
T Consensus 32 sf~~Gd~i~v~~~ 44 (76)
T 2csi_A 32 TFCTGDIITVFGE 44 (76)
T ss_dssp CCCTTCEEEEESS
T ss_pred cCCCCCEEEEeEe
Confidence 5788998888874
No 118
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.83 E-value=62 Score=19.93 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=10.7
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 34 Lsf~~Gd~i~v~~~ 47 (81)
T 1x6g_A 34 LAFRKGDVVTILEA 47 (81)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEec
Confidence 35788898888874
No 119
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.81 E-value=49 Score=20.19 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=10.1
Q ss_pred CcccCCEEEEeecC
Q 033131 2 HVKAGDTVKVIAGC 15 (126)
Q Consensus 2 ~I~kGD~V~Vi~Gk 15 (126)
.+++||.|.|+.-.
T Consensus 31 s~~~Gd~i~v~~~~ 44 (78)
T 2dl5_A 31 TIEEHEVLEVIEDG 44 (78)
T ss_dssp CBCSSEEEEEEECC
T ss_pred CCCCCCEEEEEecc
Confidence 56778888887743
No 120
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=29.76 E-value=44 Score=20.17 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=11.4
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 26 Ls~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 26 LSFKRGDILKVLNEE 40 (74)
T ss_dssp CCBCTTCEEECCBCS
T ss_pred eeEcCCCEEEEeEec
Confidence 357889999988743
No 121
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=29.42 E-value=20 Score=21.74 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=10.0
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.+.|+.
T Consensus 27 Lsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 27 LSFTAGTVFDNVH 39 (72)
T ss_dssp CCBCTTCEEBSCC
T ss_pred eCCcCCCEEEEEE
Confidence 3578899888875
No 122
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=29.10 E-value=54 Score=19.21 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=10.0
Q ss_pred CcccCCEEEEeec
Q 033131 2 HVKAGDTVKVIAG 14 (126)
Q Consensus 2 ~I~kGD~V~Vi~G 14 (126)
.+++||.+.|+..
T Consensus 26 sf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 26 SFKEGDLITLLVP 38 (67)
T ss_dssp CBCTTCEEEECSS
T ss_pred cCCCCCEEEEeec
Confidence 5788888888854
No 123
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=28.90 E-value=37 Score=25.61 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=21.8
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccC
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHN 30 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~ 30 (126)
|+++.||.|.+ .|...=-.++|.++.++.
T Consensus 27 lRl~~Gd~v~l-dg~g~~~~a~i~~~~~~~ 55 (229)
T 2egv_A 27 RRIEKDEEFGV-IHEGKIYVCKVRREDKRE 55 (229)
T ss_dssp TTCCTTCCEEE-EETTEEEEEEEEEECSSE
T ss_pred hcCCCCCEEEE-eCCCCEEEEEEEEecCCE
Confidence 57899999999 886554557888886543
No 124
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=28.80 E-value=40 Score=19.50 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.1
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 22 Ls~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 22 LEFQEGDIILVLSK 35 (62)
T ss_dssp CCBCSSCEEEEEEE
T ss_pred ccCCCCCEEEEEEe
Confidence 35788999999874
No 125
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=28.76 E-value=44 Score=18.86 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.0
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (57)
T 1cka_A 18 LPFKKGDILRIRDK 31 (57)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEe
Confidence 35788999998874
No 126
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=28.58 E-value=46 Score=18.87 Aligned_cols=14 Identities=21% Similarity=0.608 Sum_probs=11.2
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (58)
T 1uti_A 18 LGFRSGEVVEVLDS 31 (58)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEE
Confidence 35789999999874
No 127
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=28.13 E-value=32 Score=25.58 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=22.3
Q ss_pred cccCCEEEEee------c----CCCCeEeEEEEEEccCCeEEE
Q 033131 3 VKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMV 35 (126)
Q Consensus 3 I~kGD~V~Vi~------G----kdKGK~G~V~~V~~~~~~V~V 35 (126)
.++||.|-|.. | .+-|++|.|..|...--.|+|
T Consensus 34 yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~AvgV~V 76 (164)
T 3iz5_U 34 YKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEI 76 (164)
T ss_dssp CCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSSSEEEEE
T ss_pred hCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCCEEEEEE
Confidence 57899998852 3 256999999877654434443
No 128
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.02 E-value=38 Score=21.31 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=10.9
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 34 Lsf~~Gd~i~v~~~ 47 (90)
T 2yup_A 34 LSFRKGEHICLIRK 47 (90)
T ss_dssp CCCCTTCEEEESSC
T ss_pred CCCCCCCEEEEEEE
Confidence 35788999999863
No 129
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=27.99 E-value=48 Score=19.68 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.2
Q ss_pred CCcccCCEEEEeecCC
Q 033131 1 MHVKAGDTVKVIAGCD 16 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gkd 16 (126)
+.+++||.|.|+.-.+
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (65)
T 2nwm_A 18 LTLQKGDIVYIHKEVD 33 (65)
T ss_dssp CCBCTTCEEEEEECCT
T ss_pred cCCcCCCEEEEEEecC
Confidence 3578999999987543
No 130
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=27.84 E-value=48 Score=18.71 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=11.2
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 19 Ls~~~Gd~i~v~~~ 32 (58)
T 2vwf_A 19 LGFRRGDFIHVMDN 32 (58)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEc
Confidence 35789999999874
No 131
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=27.84 E-value=37 Score=19.34 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 19 Ls~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 19 LTIKSGDKVYILDD 32 (60)
T ss_dssp CCBCTTCEEEEEES
T ss_pred ccCCCCCEEEEEeC
Confidence 36789999999874
No 132
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=27.80 E-value=45 Score=19.26 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=10.7
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 20 Ls~~~Gd~i~v~~~ 33 (62)
T 2fpe_A 20 LELEVDDPLLVELQ 33 (62)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred CcCCCCCEEEEEEe
Confidence 35788999998854
No 133
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=27.58 E-value=51 Score=18.62 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 20 LTFKEGDTIIVHQKD 34 (58)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEec
Confidence 357889999888743
No 134
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=27.38 E-value=71 Score=19.91 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=10.8
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 34 Ls~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 34 LNFEKGETMEVIEK 47 (91)
T ss_dssp CCCCTTCEEEEEEC
T ss_pred ccCCCCCEEEEEEC
Confidence 35788999888874
No 135
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=27.18 E-value=49 Score=19.11 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=11.1
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 22 Ls~~~Gd~i~v~~~ 35 (62)
T 1uj0_A 22 LTFKHGELITVLDD 35 (62)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEe
Confidence 35789999999874
No 136
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=26.95 E-value=39 Score=19.35 Aligned_cols=15 Identities=13% Similarity=0.514 Sum_probs=11.9
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 20 LPFRKGDVITILKKS 34 (60)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred eeEcCCCEEEEEEeC
Confidence 357899999998754
No 137
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=26.94 E-value=31 Score=20.39 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.1
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (68)
T 1wi7_A 24 LELKVGDIIEVVG 36 (68)
T ss_dssp CCBCTTCEECCCE
T ss_pred ccCcCCCEEEEEE
Confidence 3578899988875
No 138
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.81 E-value=75 Score=20.24 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=10.2
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 42 Lsf~~Gd~i~vl~ 54 (97)
T 2csq_A 42 LPFKEGQIIKVYG 54 (97)
T ss_dssp CCBCTTCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 3578899999984
No 139
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=26.72 E-value=51 Score=18.96 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=11.2
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (65)
T 2oaw_A 18 VTMKKGDILTLLNS 31 (65)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEc
Confidence 36789999999884
No 140
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=26.64 E-value=49 Score=19.44 Aligned_cols=15 Identities=7% Similarity=0.290 Sum_probs=11.6
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 19 Ls~~~Gd~i~v~~~~ 33 (67)
T 1gl5_A 19 LRLERGQEYIILEKN 33 (67)
T ss_dssp CCBCTTCEEEEEECS
T ss_pred ecCCcCCEEEEEEcc
Confidence 357889999998853
No 141
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=26.63 E-value=47 Score=19.78 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 23 Ls~~~Gd~i~v~~~~ 37 (71)
T 2fpf_A 23 LELEVDDPLLVELQA 37 (71)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred ccCcCCcEEEEeEec
Confidence 357899999998543
No 142
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=26.52 E-value=52 Score=18.89 Aligned_cols=15 Identities=0% Similarity=0.087 Sum_probs=11.5
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.+.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (61)
T 1y0m_A 20 LTFTKSAIIQNVEKQ 34 (61)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cCCcCCCEEEEEEec
Confidence 357889999998753
No 143
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=26.46 E-value=54 Score=20.95 Aligned_cols=14 Identities=29% Similarity=0.683 Sum_probs=10.8
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 46 Lsf~~GD~I~Vl~~ 59 (89)
T 2rf0_A 46 LTLRRGDRVQVLSQ 59 (89)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cccCCCCEEEEEec
Confidence 35788999888874
No 144
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=26.34 E-value=1.1e+02 Score=18.70 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=15.4
Q ss_pred cccCCEEEEeecCCCCeEeEEEEEEccCCeEEE
Q 033131 3 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 35 (126)
Q Consensus 3 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~V 35 (126)
++.||+|.| +|++++++++++.+
T Consensus 46 ~~~Gd~V~v----------~V~~vd~~~~~i~l 68 (80)
T 2k52_A 46 LNVGDEIIV----------QAIDVRPEKREIDF 68 (80)
T ss_dssp CCTTCEEEE----------EEEEEETTTTEEEE
T ss_pred eCCCCEEEE----------EEEEEECCCCEEEE
Confidence 566777654 67777777666654
No 145
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=26.03 E-value=50 Score=19.29 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=11.0
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (65)
T 2j05_A 23 ISFLKGDMFIVHNE 36 (65)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred CcCCCCCEEEEeEe
Confidence 35788999998874
No 146
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.02 E-value=36 Score=20.89 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=9.0
Q ss_pred CcccCCEEEEee
Q 033131 2 HVKAGDTVKVIA 13 (126)
Q Consensus 2 ~I~kGD~V~Vi~ 13 (126)
.+++||.|.|+.
T Consensus 35 s~~~Gd~i~v~~ 46 (79)
T 1x6b_A 35 TLQQADVVLVLQ 46 (79)
T ss_dssp CCCTTEEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 567788888776
No 147
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=25.96 E-value=1.1e+02 Score=18.30 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=23.4
Q ss_pred CcccCCEEEEeec-CCCCeEeEEEEEEccCCeEEE
Q 033131 2 HVKAGDTVKVIAG-CDKGKIGEITKVFRHNSTVMV 35 (126)
Q Consensus 2 ~I~kGD~V~Vi~G-kdKGK~G~V~~V~~~~~~V~V 35 (126)
..++||.+...-- ..+=-.++|++|....+.+.|
T Consensus 8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V 42 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAI 42 (64)
T ss_dssp CCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEE
Confidence 5688999998852 222244999999976665544
No 148
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=25.72 E-value=51 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=11.0
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 19 Ls~~~Gd~i~v~~~ 32 (58)
T 1zx6_A 19 LGLKPGDKVQLLEK 32 (58)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred ccCCCCCEEEEEEe
Confidence 35789999999864
No 149
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=25.31 E-value=43 Score=19.42 Aligned_cols=14 Identities=14% Similarity=0.560 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (64)
T 2jte_A 23 LTFREGEIIHLISK 36 (64)
T ss_dssp CCBCTTCEEEEEES
T ss_pred cCCCCCCEEEEEEC
Confidence 36789999999864
No 150
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=25.10 E-value=43 Score=25.88 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.8
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEcc
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFRH 29 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~ 29 (126)
+++.||.|.+ .|..|.|.++.-.
T Consensus 129 pf~vGD~I~i-----~g~~G~V~~I~l~ 151 (286)
T 2vv5_A 129 PFRAGEYVDL-----GGVAGTVLSVQIF 151 (286)
T ss_dssp SSCTTCEEES-----SSCEEEEEEECSS
T ss_pred CccCCCEEEE-----CCEEEEEEEEEeE
Confidence 6899999987 2688999998653
No 151
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=25.10 E-value=82 Score=19.30 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=10.6
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+.+||.+.|+.
T Consensus 22 Ls~~~Gd~I~V~~ 34 (83)
T 3i5r_A 22 IDLHLGDILTVNK 34 (83)
T ss_dssp CCBCTTCEEEEEH
T ss_pred cccCCCCEEEEee
Confidence 3678999999984
No 152
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=24.79 E-value=81 Score=20.85 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=18.7
Q ss_pred CcccCCEEEEee-cCCCCeEeEEEEEEc
Q 033131 2 HVKAGDTVKVIA-GCDKGKIGEITKVFR 28 (126)
Q Consensus 2 ~I~kGD~V~Vi~-GkdKGK~G~V~~V~~ 28 (126)
.|..||+|.|.. |...+..|+|.-|=+
T Consensus 7 ~~~VG~rV~V~~~~~~~~~~GtVryvG~ 34 (95)
T 1whl_A 7 GIDVGCPVKVQLRSGEEKFPGVVRFRGP 34 (95)
T ss_dssp CCCSSCEEEEECSSSSCEEEEEEEEECC
T ss_pred cCcCCCEEEEecCCCccceeEEEEEeCc
Confidence 478999999973 433457788876643
No 153
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=24.69 E-value=54 Score=19.27 Aligned_cols=17 Identities=18% Similarity=0.602 Sum_probs=12.2
Q ss_pred CCcccCCEEEEeecCCC
Q 033131 1 MHVKAGDTVKVIAGCDK 17 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdK 17 (126)
+.+++||.+.|+.-.+.
T Consensus 30 Ls~~~Gd~i~v~~~~~~ 46 (72)
T 4glm_A 30 LDFEVGDKIRILATLED 46 (72)
T ss_dssp CCBCTTCEEEEEEECST
T ss_pred CCCCCCCEEEEEEccCC
Confidence 35788999998875443
No 154
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=24.55 E-value=60 Score=18.39 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=11.0
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 20 Ls~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 20 LYFEEGDIIYITDM 33 (58)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred ccCCCCCEEEEEEe
Confidence 35788999999874
No 155
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=24.53 E-value=57 Score=18.27 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=11.8
Q ss_pred CCcccCCEEEEeecCC
Q 033131 1 MHVKAGDTVKVIAGCD 16 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gkd 16 (126)
+.+++||.+.|+.-.+
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (58)
T 4e6r_A 18 LSLVXGSRVTVMEXCS 33 (58)
T ss_dssp CCBCTTCEEEEEEECT
T ss_pred eeEeCCCEEEEeEcCC
Confidence 3578899999886443
No 156
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=24.52 E-value=58 Score=24.01 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=22.6
Q ss_pred cccCCEEEEee------c----CCCCeEeEEEEEEccCCeEEE
Q 033131 3 VKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMV 35 (126)
Q Consensus 3 I~kGD~V~Vi~------G----kdKGK~G~V~~V~~~~~~V~V 35 (126)
.++||.|-|.. | .+-|++|.|..|....--|+|
T Consensus 34 yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiV 76 (160)
T 3izc_U 34 YKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVII 76 (160)
T ss_dssp CCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEE
T ss_pred hcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEE
Confidence 57899998842 3 255999999887655434444
No 157
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=24.43 E-value=59 Score=18.71 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=12.2
Q ss_pred CCcccCCEEEEeecCCC
Q 033131 1 MHVKAGDTVKVIAGCDK 17 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdK 17 (126)
+.+++||.+.|+.-.+.
T Consensus 26 Ls~~~Gd~i~v~~~~~~ 42 (65)
T 3ulr_B 26 ISFDPDDIITNIEMIDD 42 (65)
T ss_dssp CCBCTTCEEEEEECCSS
T ss_pred eeEecCCEEEEEEecCC
Confidence 35788999998875443
No 158
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=24.43 E-value=55 Score=18.91 Aligned_cols=14 Identities=7% Similarity=0.532 Sum_probs=11.1
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 18 LTIRVGEIIRNVKK 31 (62)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCcCCCEEEEEEe
Confidence 35789999999874
No 159
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=24.43 E-value=56 Score=24.92 Aligned_cols=52 Identities=13% Similarity=0.337 Sum_probs=35.7
Q ss_pred CeeeeecCCCC-eeeEEEEEccCCcEEEEEcccCccccc-----chhhhhhhhcc--cceeee
Q 033131 67 NVMLYSKEMEV-ASRVGHKVLDDGTRVRYLIKTGEIIDS-----AENWKKLKEAN--RQEKTE 121 (126)
Q Consensus 67 NV~Lv~p~~~~-~~rv~~~~~~dG~kvRv~k~sg~~i~~-----p~~~~~~~k~~--~~~~~~ 121 (126)
|+.+.||.|+. +..+-+-. +.|. .||..||.+|.. =.-|.-+..|. ++.+..
T Consensus 19 n~~~~CPECGs~~t~IV~D~-erGE--~VCsdCGLVLEEriID~GPEWRAFsnDD~~~dDpSR 78 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERF-SEGD--VVCALCGLVLSDKLVDTRSEWRTFSNXXXXXXXXXX 78 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEG-GGTE--EEETTTCBBCCCCCBCHHHHHHHHHCCCTTTTCSCC
T ss_pred ccCeECcCCCCcCCeEEEeC-CCCE--EEEcCCCCCcCCceeECCCCCcCcCCcccccccccc
Confidence 56678999987 46676543 5665 899999999754 13688887653 444443
No 160
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=24.40 E-value=66 Score=21.13 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=18.3
Q ss_pred CcccCCEEEEeecCCCCeEeEEEEEEc
Q 033131 2 HVKAGDTVKVIAGCDKGKIGEITKVFR 28 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~ 28 (126)
.|..||+|.|..| ++.|.|.-|=+
T Consensus 5 ~i~vG~Rv~v~~~---~~~G~VryvG~ 28 (84)
T 4b6m_A 5 TIHVGDRCLCRPG---DRLGSVRFVGR 28 (84)
T ss_dssp CCCTTCEEEETTT---TEEEEEEEEEE
T ss_pred CcccCCEEEEcCC---CeEEEEEEEec
Confidence 5789999999654 47788887754
No 161
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.36 E-value=90 Score=22.47 Aligned_cols=31 Identities=6% Similarity=0.117 Sum_probs=21.2
Q ss_pred CCcccCCEEEEeecCCCCeEeEEEEEEccCC
Q 033131 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNS 31 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~ 31 (126)
+.|.+||.|.|---++--..|.|+-++....
T Consensus 68 IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~de 98 (143)
T 1d7q_A 68 VWINTSDIILVGLRDYQDNKADVILKYNADE 98 (143)
T ss_dssp CCCCTTCEEEEECSSSSSSCCEEEEEECTTT
T ss_pred EEecCCCEEEEeeccCCCCeEEEEEEeCHHH
Confidence 3688999999965554434478877775544
No 162
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=24.10 E-value=58 Score=19.22 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.0
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.+.|+.-
T Consensus 20 Lsf~~Gd~i~v~~~ 33 (65)
T 1b07_A 20 LPFKKGDILRIRDK 33 (65)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCcCCCEEEEEEe
Confidence 35788999998874
No 163
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=23.96 E-value=66 Score=19.71 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=12.2
Q ss_pred CCcccCCEEEEeecCCC
Q 033131 1 MHVKAGDTVKVIAGCDK 17 (126)
Q Consensus 1 ~~I~kGD~V~Vi~GkdK 17 (126)
+.+++||.+.|+.-.+-
T Consensus 27 Lsf~~Gd~i~v~~~~~~ 43 (80)
T 2i0n_A 27 LPFKRNDIITITFKDQE 43 (80)
T ss_dssp CCBCSSEEEEEEEESSS
T ss_pred cCCCCCCEEEEEEecCC
Confidence 35788999888875443
No 164
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=23.79 E-value=59 Score=20.05 Aligned_cols=15 Identities=7% Similarity=0.445 Sum_probs=11.6
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 22 Ls~~~Gd~i~vl~~~ 36 (79)
T 3cqt_A 22 LSFHKGEKFQILNSS 36 (79)
T ss_dssp CCBCTTCEEEEEECT
T ss_pred CCCCCCCEEEEEEec
Confidence 357899999998743
No 165
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=23.74 E-value=56 Score=19.18 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=11.2
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.+.|+.-.
T Consensus 23 Ls~~~Gd~i~v~~~~ 37 (69)
T 4esr_A 23 LTIHRGDIIRVFFKD 37 (69)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred CCCCCCCEEEEEEec
Confidence 357889999888644
No 166
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=23.69 E-value=63 Score=18.95 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=10.8
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 2djq_A 24 LKFNKGDVILLRRQ 37 (68)
T ss_dssp CCCCTTCEEEEEEC
T ss_pred ccCCCCCEEEEEEe
Confidence 35788999988864
No 167
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.55 E-value=62 Score=18.98 Aligned_cols=15 Identities=7% Similarity=0.317 Sum_probs=11.1
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 24 Ls~~~Gd~i~v~~~~ 38 (68)
T 1x2p_A 24 LSFLRGEKILILRQT 38 (68)
T ss_dssp CCCCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEcC
Confidence 357888988888743
No 168
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=23.47 E-value=60 Score=19.20 Aligned_cols=15 Identities=7% Similarity=0.445 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 32 Ls~~~Gd~i~v~~~~ 46 (73)
T 3h0h_A 32 LSFHKGEKFQILNSS 46 (73)
T ss_dssp CCBCTTCEEEEEECS
T ss_pred ceEeCCCEEEEEEec
Confidence 357889999988643
No 169
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=23.40 E-value=60 Score=21.98 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=19.7
Q ss_pred CcccCCEEEEeecCCC-CeEeEEEEEEcc
Q 033131 2 HVKAGDTVKVIAGCDK-GKIGEITKVFRH 29 (126)
Q Consensus 2 ~I~kGD~V~Vi~GkdK-GK~G~V~~V~~~ 29 (126)
.|.+||.|.|---++- -..|.|.-++..
T Consensus 58 wI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~ 86 (102)
T 1jt8_A 58 WVREGDVVIVKPWEVQGDQKCDIIWRYTK 86 (102)
T ss_dssp CCCSCEEEEECCBCCTTSEEEEEEEESSC
T ss_pred EecCCCEEEEEeccCCCCceEEEEEEeCH
Confidence 5889999999554544 455888777644
No 170
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=23.24 E-value=56 Score=19.84 Aligned_cols=15 Identities=7% Similarity=0.315 Sum_probs=11.3
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 24 Ls~~~Gd~i~v~~~~ 38 (80)
T 1ue9_A 24 LSLAPGQLILILKKN 38 (80)
T ss_dssp CCCCTTCEEEEEEEC
T ss_pred CCCCCCCEEEEEEec
Confidence 357889999888753
No 171
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=22.95 E-value=67 Score=18.22 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=11.6
Q ss_pred CCcccCCEEEEeecCC
Q 033131 1 MHVKAGDTVKVIAGCD 16 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gkd 16 (126)
+.+++||.+.|+.-.+
T Consensus 23 Ls~~~Gd~i~v~~~~~ 38 (62)
T 3ngp_A 23 LTVKKGDILTLLNSTN 38 (62)
T ss_dssp CCBCTTCEEEEEECCS
T ss_pred ccCCCCCEEEEeEecC
Confidence 3578899988887543
No 172
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=22.94 E-value=61 Score=18.48 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=11.0
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.+.|+.-.
T Consensus 23 Ls~~~Gd~i~v~~~~ 37 (64)
T 4f14_A 23 VSFRDGDYIVNVQPI 37 (64)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred CCCCCCCEEEEEEeC
Confidence 357889998887643
No 173
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=22.86 E-value=50 Score=19.41 Aligned_cols=14 Identities=14% Similarity=0.612 Sum_probs=11.0
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (70)
T 2cuc_A 24 LDLQKGEGIRVLGK 37 (70)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred CCCCCCCEEEEEEe
Confidence 35789999999863
No 174
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=22.50 E-value=67 Score=18.87 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=11.0
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (71)
T 2jt4_A 23 LTIKSGDKVYILDD 36 (71)
T ss_dssp CCBCTTCEEEEEES
T ss_pred ccCCCCCEEEEEEC
Confidence 35788999999873
No 175
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=22.32 E-value=52 Score=19.38 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=11.8
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.+.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (69)
T 1wyx_A 20 LSFRKGDIMTVLEQD 34 (69)
T ss_dssp CCBCTTCEEEEEETT
T ss_pred cCCcCCCEEEEeECC
Confidence 357899999998754
No 176
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=22.29 E-value=66 Score=19.67 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=12.3
Q ss_pred CCcccCCEEEEeecCC
Q 033131 1 MHVKAGDTVKVIAGCD 16 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gkd 16 (126)
+.+++||.|.|+.-.+
T Consensus 19 Ls~~~Gd~i~v~~~~~ 34 (80)
T 2pqh_A 19 VTMKKGDILTLLNSTN 34 (80)
T ss_dssp CCBCTTCEEEEEECCS
T ss_pred cCCCCCCEEEEEEecC
Confidence 3578999999998543
No 177
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=21.81 E-value=54 Score=19.40 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=10.8
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 25 Ls~~~Gd~i~v~~ 37 (68)
T 2k2m_A 25 LSVKQRDVLEVLD 37 (68)
T ss_dssp CCBCTTCEEEEEE
T ss_pred ccCCCCCEEEEEE
Confidence 3578999999987
No 178
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.69 E-value=55 Score=19.33 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=10.7
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (68)
T 1wxb_A 24 LSVLKDEVLEVLE 36 (68)
T ss_dssp CCBCTTCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 3578999999986
No 179
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.58 E-value=36 Score=25.18 Aligned_cols=34 Identities=35% Similarity=0.667 Sum_probs=23.6
Q ss_pred cccCCEEEEee------c----CCCCeEeEEEEEEccCCeEEEe
Q 033131 3 VKAGDTVKVIA------G----CDKGKIGEITKVFRHNSTVMVK 36 (126)
Q Consensus 3 I~kGD~V~Vi~------G----kdKGK~G~V~~V~~~~~~V~Ve 36 (126)
.++||.|-|.- | .+-|++|.|..|...-..|+|.
T Consensus 34 yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVn 77 (160)
T 2zkr_q 34 YKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVN 77 (160)
T ss_dssp CCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEE
T ss_pred cCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEE
Confidence 57899997763 4 2468999998776554455554
No 180
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.38 E-value=56 Score=19.30 Aligned_cols=14 Identities=7% Similarity=0.434 Sum_probs=11.0
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~vl~~ 37 (70)
T 2ct4_A 24 ISMAEGEDLSLMEE 37 (70)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEec
Confidence 35789999999874
No 181
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=21.35 E-value=72 Score=19.06 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=11.5
Q ss_pred CCcccCCEEEEeecC
Q 033131 1 MHVKAGDTVKVIAGC 15 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gk 15 (126)
+.+++||.|.|+.-.
T Consensus 16 Ls~~~Gd~i~v~~~~ 30 (73)
T 2kxd_A 16 VTMKKGDILTLLNST 30 (73)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred eeEcCCCEEEEEEec
Confidence 357889999998743
No 182
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=21.29 E-value=58 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=10.9
Q ss_pred CCcccCCEEEEeec
Q 033131 1 MHVKAGDTVKVIAG 14 (126)
Q Consensus 1 ~~I~kGD~V~Vi~G 14 (126)
+.+++||.|.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (65)
T 3u23_A 24 LELKVGDIIDINEE 37 (65)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 35789999998863
No 183
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=21.28 E-value=55 Score=20.52 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=12.1
Q ss_pred CCcccCCEEEEeecCC
Q 033131 1 MHVKAGDTVKVIAGCD 16 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gkd 16 (126)
+.+++||.|.|+.-.+
T Consensus 36 Lsf~~GDiI~V~~~~~ 51 (83)
T 2ke9_A 36 LNVRAGDVITVLEQHP 51 (83)
T ss_dssp CCBCTTCEEEESCSSC
T ss_pred ccccCCCEEEEEEecC
Confidence 3578999999987543
No 184
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=21.18 E-value=75 Score=18.49 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=12.1
Q ss_pred CCcccCCEEEEeecCC
Q 033131 1 MHVKAGDTVKVIAGCD 16 (126)
Q Consensus 1 ~~I~kGD~V~Vi~Gkd 16 (126)
+.+++||.+.|+.-.+
T Consensus 6 Ls~~~Gd~i~v~~~~~ 21 (63)
T 1tuc_A 6 VTMKKGDILTLLNSTN 21 (63)
T ss_dssp CCBCTTCEEEEEECCS
T ss_pred cCCCCCCEEEEEEecC
Confidence 3578999999987443
No 185
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=20.57 E-value=59 Score=19.56 Aligned_cols=13 Identities=8% Similarity=0.376 Sum_probs=10.8
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.+.|+.
T Consensus 21 Lsf~~Gd~i~vl~ 33 (67)
T 2b86_A 21 LDIKKNERLWLLD 33 (67)
T ss_dssp CCBCTTCEEEEEE
T ss_pred cccCCCCEEEEEe
Confidence 3578999999987
No 186
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.41 E-value=80 Score=18.56 Aligned_cols=13 Identities=15% Similarity=0.675 Sum_probs=10.5
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.+.|+.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (68)
T 2dl4_A 24 LEMRPGDIITLLE 36 (68)
T ss_dssp CCCCTTCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 3578899999887
No 187
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=20.23 E-value=60 Score=19.42 Aligned_cols=13 Identities=8% Similarity=0.376 Sum_probs=11.0
Q ss_pred CCcccCCEEEEee
Q 033131 1 MHVKAGDTVKVIA 13 (126)
Q Consensus 1 ~~I~kGD~V~Vi~ 13 (126)
+.+++||.|.|+.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (72)
T 2jw4_A 24 LDIKKNERLWLLD 36 (72)
T ss_dssp CCCCTTCEEEEEE
T ss_pred ccCCCCCEEEEEE
Confidence 3578999999997
No 188
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.10 E-value=58 Score=19.13 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=9.7
Q ss_pred CcccCCEEEEeec
Q 033131 2 HVKAGDTVKVIAG 14 (126)
Q Consensus 2 ~I~kGD~V~Vi~G 14 (126)
.+++||.|.|+.-
T Consensus 25 s~~~Gd~i~v~~~ 37 (70)
T 2ct3_A 25 ELREGDRVDVMQQ 37 (70)
T ss_dssp CBCTTEEEEEEEE
T ss_pred cCCCCCEEEEEEE
Confidence 5778888888764
Done!