RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 033131
(126 letters)
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 98.6 bits (246), Expect = 8e-29
Identities = 35/97 (36%), Positives = 55/97 (56%)
Query: 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIE 60
MHVK GDTV V +G KG++G++ +V V+V+ +N+ K V+ + QG I+ E
Sbjct: 4 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKE 63
Query: 61 APIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIK 97
AP+H+S V +RV K L++G ++R K
Sbjct: 64 APLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAK 100
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 110
Score = 94.0 bits (234), Expect = 8e-27
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIE 60
+H K GDTV V++G KG+ G++ + V+V+ +N+ TK+VK QG + E
Sbjct: 11 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRE 70
Query: 61 APIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 100
+H+S V L E A+RV ++ DG +VR + +G+
Sbjct: 71 LALHASKVALVDPETGKATRVRKQI-VDGKKVRVAVASGK 109
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 88.2 bits (219), Expect = 1e-24
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 3 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKR-EEEEQGQIIKIEA 61
++ D V V+ G DKGK G++ V V+V+ INL KH K + G I++ EA
Sbjct: 2 IRRDDEVIVLTGKDKGKRGKVKNVLSSG-KVIVEGINLVKKHQKPVPALNQPGGIVEKEA 60
Query: 62 PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 100
I SNV +++ A RVG + +DG +VR+ E
Sbjct: 61 AIQVSNVAIFNAATGKADRVGFR-FEDGKKVRFFKSNSE 98
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 69.7 bits (171), Expect = 3e-17
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 1 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIE 60
+ V AGDTV+V+ G G+ GE+ V + + V+D+ L+ + ++
Sbjct: 40 VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGE-----------EVP 88
Query: 61 APIHSSNVMLYSKEMEVASRVGHKVLDDGT 90
P+ +SNV + ++E R +D +
Sbjct: 89 RPLDTSNVRVTDLDLEDEKREARLESEDDS 118
>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre
{Rhodobacter sphaeroides [TaxId: 1063]}
Length = 213
Score = 27.8 bits (62), Expect = 0.34
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 1 MHVKAGDTVK--VIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 58
HV AG + GCD G++ ++ M + + ++ K R Q ++
Sbjct: 105 FHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQ 164
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 25.8 bits (57), Expect = 0.55
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 2 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVM 34
+ K GD VKVIAG +G G I +V + +
Sbjct: 10 YFKMGDHVKVIAGRFEGDTGLIVRVEENFVILF 42
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
NusG, C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 58
Score = 24.9 bits (55), Expect = 1.0
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 4 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 35
+ GD V+VI G G + +V + V
Sbjct: 6 EKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV 37
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 58
Score = 24.9 bits (55), Expect = 1.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 4 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 35
+ GD V+V++G G +T++ V V
Sbjct: 6 REGDQVRVVSGPFADFTGTVTEINPERGKVKV 37
>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol
dehydrogenase) {Silverleaf whitefly (Bemisia
argentifolii) [TaxId: 77855]}
Length = 178
Score = 25.7 bits (55), Expect = 1.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1 MHVKAGDTVKVIAGC 15
KA +T+KV+ C
Sbjct: 162 ARKKADNTIKVMISC 176
>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain
{Thermus thermophilus [TaxId: 274]}
Length = 214
Score = 24.9 bits (54), Expect = 2.8
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 42 TKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLD-DGTRVRYLIKTGE 100
+ R +I+K+ A H + E K T+VR L++ G+
Sbjct: 136 AHRIFDRLPPLGIEIVKVGAVFHCPLCGGIASERTCPEGHREKRTAISMTKVRALLREGK 195
Query: 101 II 102
Sbjct: 196 AP 197
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
aureus [TaxId: 1280]}
Length = 270
Score = 24.6 bits (53), Expect = 4.0
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 5 AGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQII 57
D V AG G + NS ++ V ++ + G I
Sbjct: 182 LTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQI 234
>d3c5zd2 d.19.1.1 (D:1-120) Class II MHC beta chain, N-terminal
domain {Mouse (Mus musculus), I-AB [TaxId: 10090]}
Length = 120
Score = 23.5 bits (51), Expect = 5.7
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 104 SAENWKKLKEANRQEKTEVAT 124
AE W E + + E+ T
Sbjct: 83 DAEYWNSQPEILERTRAELDT 103
>d1klub2 d.19.1.1 (B:1-92) Class II MHC beta chain, N-terminal
domain {Human (Homo sapiens), HLA-DR1 [TaxId: 9606]}
Length = 92
Score = 22.6 bits (49), Expect = 9.5
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 104 SAENWKKLKEANRQEKTEVAT 124
AE W K+ Q + V T
Sbjct: 57 DAEYWNSQKDLLEQRRAAVDT 77
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
1314]}
Length = 365
Score = 23.5 bits (50), Expect = 10.0
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 31 STVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSN 67
S V+ +++LKTK + + PI ++
Sbjct: 24 SHVLPNEVDLKTKLADN---------LTLNIPIITAA 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.349
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,062
Number of extensions: 18762
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 31
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.4 bits)