Query 033132
Match_columns 126
No_of_seqs 142 out of 1017
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:44:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 93.9 0.75 2.6E-05 29.6 9.2 46 76-125 34-83 (110)
2 2i68_A Protein EMRE; transmemb 92.1 0.18 6.2E-06 34.1 4.1 46 76-125 34-83 (137)
3 3arc_Y Protein YCF12; PSII, me 30.0 54 0.0019 16.0 3.0 19 105-123 8-26 (29)
4 3bz1_y Protein YCF12; electron 22.0 1E+02 0.0036 16.6 3.0 19 105-123 25-43 (46)
5 1q90_R Cytochrome B6-F complex 10.9 2.3E+02 0.0078 15.3 2.6 20 63-82 6-25 (49)
6 2k9p_A Pheromone alpha factor 8.8 2.8E+02 0.0096 16.6 2.7 15 42-57 27-41 (80)
7 2yiu_B Cytochrome C1, heme pro 6.6 3.3E+02 0.011 20.1 2.7 20 48-67 238-257 (263)
8 3mp7_B Preprotein translocase 5.4 5E+02 0.017 14.5 3.1 10 65-74 24-33 (61)
9 3tij_A NUPC family protein; me 5.0 9E+02 0.031 19.0 4.5 36 41-77 9-44 (424)
10 2qjy_B Cytochrome C1; cytochro 5.0 3.5E+02 0.012 20.0 2.0 32 40-71 229-260 (269)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=93.93 E-value=0.75 Score=29.56 Aligned_cols=46 Identities=9% Similarity=-0.032 Sum_probs=37.7
Q ss_pred HHHHhhcchhHHHHHHHHHHHhhcchHHHHHHH-HHhHHHHHHH---HHHhhhh
Q 033132 76 LLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSF-TCGIYCVTVL---VIIKDVV 125 (126)
Q Consensus 76 llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii-~~~~Pv~~~l---~~~~~~~ 125 (126)
+.+..+. .....++..++++.+.+.+..+ .+..|+++.+ +.++|+.
T Consensus 34 ~~~~~~~----~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~ 83 (110)
T 3b5d_A 34 VGTIICY----CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL 83 (110)
T ss_pred HHHHHHH----HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence 4566666 7888899999999999999888 7999999987 5667764
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=92.06 E-value=0.18 Score=34.10 Aligned_cols=46 Identities=9% Similarity=-0.032 Sum_probs=31.7
Q ss_pred HHHHhhcchhHHHHHHHHHHHhhcchHHHHHHH-HHhHHHHHHH---HHHhhhh
Q 033132 76 LLGFLGYAKFYFFDLVAGFFLFDYNKFSCFYSF-TCGIYCVTVL---VIIKDVV 125 (126)
Q Consensus 76 llg~~G~~~~~~~~~~~~~~gl~~tsa~~a~ii-~~~~Pv~~~l---~~~~~~~ 125 (126)
++|+++. .+.++++..++++.+++.+..+ .++.|+++.+ ++++|+.
T Consensus 34 ~l~i~~~----~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~l 83 (137)
T 2i68_A 34 VGTIICY----CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL 83 (137)
T ss_dssp CHHHHHH----HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHH----HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4566666 7889999999999999999888 8999999988 5667764
No 3
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=30.03 E-value=54 Score=16.03 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=15.6
Q ss_pred HHHHHHhHHHHHHHHHHhh
Q 033132 105 FYSFTCGIYCVTVLVIIKD 123 (126)
Q Consensus 105 a~ii~~~~Pv~~~l~~~~~ 123 (126)
.+++...-|+++++++.|+
T Consensus 8 l~lIv~aGP~VI~lLa~r~ 26 (29)
T 3arc_Y 8 IAMIGIAGPMIIFLLAVRR 26 (29)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCChheeehhhhc
Confidence 4467888899999999885
No 4
>3bz1_y Protein YCF12; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 3bz2_y* 3kzi_y* 3prq_y* 3prr_y*
Probab=22.05 E-value=1e+02 Score=16.64 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=15.7
Q ss_pred HHHHHHhHHHHHHHHHHhh
Q 033132 105 FYSFTCGIYCVTVLVIIKD 123 (126)
Q Consensus 105 a~ii~~~~Pv~~~l~~~~~ 123 (126)
.+++...-|+++++++.|+
T Consensus 25 LalIv~aGPlVI~LLa~R~ 43 (46)
T 3bz1_y 25 IAMIGIAGPMIIFLLAVRR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHhhhHHhhc
Confidence 4477888899999999885
No 5
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=10.89 E-value=2.3e+02 Score=15.35 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHHHhhc
Q 033132 63 IPPLTLPILSAFFLLGFLGY 82 (126)
Q Consensus 63 ~~~~~~~~~~~l~llg~~G~ 82 (126)
.|..++|++...+++|..+.
T Consensus 6 ~pdm~RRqfln~l~~G~~a~ 25 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGGAGL 25 (49)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 45567888888888777665
No 6
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=8.78 E-value=2.8e+02 Score=16.55 Aligned_cols=15 Identities=7% Similarity=0.020 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 033132 42 YSNAFASLVLLPASLL 57 (126)
Q Consensus 42 ~R~~~A~l~L~~~~~~ 57 (126)
.|... +++++++.+.
T Consensus 27 ~~iGA-s~llliil~l 41 (80)
T 2k9p_A 27 VRSGA-AALTLIVVWI 41 (80)
T ss_dssp HHHHH-HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHH
Confidence 34444 4444444333
No 7
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=6.56 E-value=3.3e+02 Score=20.07 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhcCCCCCC
Q 033132 48 SLVLLPASLLFHRSQIPPLT 67 (126)
Q Consensus 48 ~l~L~~~~~~~~r~~~~~~~ 67 (126)
.+++..++++.+|+.|..++
T Consensus 238 L~il~~l~y~~kr~~W~~vk 257 (263)
T 2yiu_B 238 LIVLAALLYLTNKKLWQPIK 257 (263)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 34445555555565555443
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.40 E-value=5e+02 Score=14.52 Aligned_cols=10 Identities=0% Similarity=-0.203 Sum_probs=5.5
Q ss_pred CCCHHHHHHH
Q 033132 65 PLTLPILSAF 74 (126)
Q Consensus 65 ~~~~~~~~~l 74 (126)
+++++++.+.
T Consensus 24 KPd~~Ef~~i 33 (61)
T 3mp7_B 24 KPNWATYKRA 33 (61)
T ss_dssp CCCTTHHHHH
T ss_pred CCCHHHHHHH
Confidence 3456666554
No 9
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=5.03 E-value=9e+02 Score=19.04 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 033132 41 FYSNAFASLVLLPASLLFHRSQIPPLTLPILSAFFLL 77 (126)
Q Consensus 41 ~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~~~l~ll 77 (126)
..+.+++.++++.+++.. -++++++++|.....+.+
T Consensus 9 ~l~sl~Gi~v~l~ia~l~-S~nrk~I~wr~V~~gl~l 44 (424)
T 3tij_A 9 LFMSLIGMAVLLGIAVLL-SSNRKAINLRTVGGAFAI 44 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH-CSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hCCcccCChHHHHHHHHH
No 10
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=4.99 E-value=3.5e+02 Score=20.03 Aligned_cols=32 Identities=9% Similarity=-0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 033132 40 VFYSNAFASLVLLPASLLFHRSQIPPLTLPIL 71 (126)
Q Consensus 40 ~~~R~~~A~l~L~~~~~~~~r~~~~~~~~~~~ 71 (126)
..+..++-.+++..++++.+|+.|..++.|..
T Consensus 229 lG~~Vl~fL~il~~l~y~~kr~~W~~vk~~~~ 260 (269)
T 2qjy_B 229 AGFTAVMFLTVLSVLLYLTNKRLWAGVKGKKK 260 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccce
Done!