Query 033132
Match_columns 126
No_of_seqs 142 out of 1017
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 16:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033132.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033132hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjd2 f.23.11.1 (D:196-241) 8.2 1.2E+02 0.009 14.9 2.2 23 41-63 10-32 (46)
2 d1q90r_ f.23.12.1 (R:) ISP sub 5.0 2.1E+02 0.016 13.5 2.6 20 63-82 4-23 (39)
3 d1b0na1 a.34.1.1 (A:74-108) Si 4.5 2.1E+02 0.015 13.0 1.6 14 25-38 8-21 (35)
4 d1rh5b_ f.23.28.1 (B:) Preprot 4.1 2.9E+02 0.021 14.0 3.2 18 65-82 17-34 (56)
5 d3cx5d2 f.23.11.1 (D:261-307) 2.9 3.8E+02 0.027 13.0 2.2 22 42-63 11-32 (47)
6 d1w53a_ a.186.1.2 (A:) Phospho 2.5 5.4E+02 0.039 13.9 2.4 20 23-42 31-50 (84)
7 d3bula1 a.46.1.1 (A:651-740) M 2.3 2.7E+02 0.019 15.4 0.8 20 26-45 29-48 (90)
8 d1ei6a_ c.76.1.4 (A:) Phosphon 1.9 3.3E+02 0.024 17.0 0.9 18 97-114 60-77 (406)
9 d1dsza_ g.39.1.2 (A:) Retinoic 1.6 5.4E+02 0.039 13.3 1.3 9 28-36 61-69 (75)
10 d1fftc_ f.25.1.1 (C:) Cytochro 1.6 9.4E+02 0.069 14.0 3.0 28 1-28 72-99 (185)
No 1
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.23 E-value=1.2e+02 Score=14.87 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 033132 41 FYSNAFASLVLLPASLLFHRSQI 63 (126)
Q Consensus 41 ~~R~~~A~l~L~~~~~~~~r~~~ 63 (126)
..+.++...++..++++..|..|
T Consensus 10 G~Kv~~~l~~l~~l~yy~KR~~W 32 (46)
T d1ppjd2 10 GLKMLLMMGLLLPLVYAMKRHKW 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555666666666555444
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.96 E-value=2.1e+02 Score=13.53 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=13.6
Q ss_pred CCCCCHHHHHHHHHHHHhhc
Q 033132 63 IPPLTLPILSAFFLLGFLGY 82 (126)
Q Consensus 63 ~~~~~~~~~~~l~llg~~G~ 82 (126)
.|...+|++..++++|..+.
T Consensus 4 VpDMgrR~~MNLll~G~~~~ 23 (39)
T d1q90r_ 4 VPDMNKRNIMNLILAGGAGL 23 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhccch
Confidence 35556788888887776554
No 3
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=4.53 E-value=2.1e+02 Score=13.04 Aligned_cols=14 Identities=29% Similarity=0.340 Sum_probs=9.9
Q ss_pred HHHHHHhCCCCHHH
Q 033132 25 AGKAAMSDGMSNLV 38 (126)
Q Consensus 25 ~~k~~l~~g~~p~~ 38 (126)
++|-|++.|+|--.
T Consensus 8 lVkeAM~SGvSK~Q 21 (35)
T d1b0na1 8 LVRDAMTSGVSKKQ 21 (35)
T ss_dssp HHHHHHHSCCCHHH
T ss_pred HHHHHHHccCCHHH
Confidence 56778888887654
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.13 E-value=2.9e+02 Score=14.01 Aligned_cols=18 Identities=22% Similarity=-0.027 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 033132 65 PLTLPILSAFFLLGFLGY 82 (126)
Q Consensus 65 ~~~~~~~~~l~llg~~G~ 82 (126)
+++++++.+.......|.
T Consensus 17 KP~~~Ef~~ia~v~~iG~ 34 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGI 34 (56)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 467888777644444443
No 5
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.88 E-value=3.8e+02 Score=13.03 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 033132 42 YSNAFASLVLLPASLLFHRSQI 63 (126)
Q Consensus 42 ~R~~~A~l~L~~~~~~~~r~~~ 63 (126)
...++...++..++++.+|.+|
T Consensus 11 ~K~~~i~s~l~~~~~y~KR~kW 32 (47)
T d3cx5d2 11 LKTVIILSSLYLLSIWVKKFKW 32 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444454555555555444333
No 6
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=2.47 E-value=5.4e+02 Score=13.94 Aligned_cols=20 Identities=0% Similarity=-0.052 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 033132 23 MFAGKAAMSDGMSNLVFVFY 42 (126)
Q Consensus 23 ~v~~k~~l~~g~~p~~l~~~ 42 (126)
-=++|.+++++++|-.++-.
T Consensus 31 ~~fsre~iek~IsPEeIV~i 50 (84)
T d1w53a_ 31 QKFSRKTIEHQIPPEEIISI 50 (84)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 34678888989999987654
No 7
>d3bula1 a.46.1.1 (A:651-740) Methionine synthase domain {Escherichia coli [TaxId: 562]}
Probab=2.28 E-value=2.7e+02 Score=15.43 Aligned_cols=20 Identities=5% Similarity=-0.175 Sum_probs=13.3
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q 033132 26 GKAAMSDGMSNLVFVFYSNA 45 (126)
Q Consensus 26 ~k~~l~~g~~p~~l~~~R~~ 45 (126)
++.++++|.+|..+.-==+.
T Consensus 29 v~~al~~g~~p~~Ii~~~Li 48 (90)
T d3bula1 29 TEEARQQATRPCEVIEGPLM 48 (90)
T ss_dssp HHHHHHHSSSTTHHHHTHHH
T ss_pred HHHHHHhcchHHHHHHHHHH
Confidence 56677778888876654333
No 8
>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas fluorescens [TaxId: 294]}
Probab=1.92 E-value=3.3e+02 Score=16.98 Aligned_cols=18 Identities=6% Similarity=-0.142 Sum_probs=13.5
Q ss_pred hhcchHHHHHHHHHhHHH
Q 033132 97 FDYNKFSCFYSFTCGIYC 114 (126)
Q Consensus 97 l~~tsa~~a~ii~~~~Pv 114 (126)
-..|+|+.+++++...|-
T Consensus 60 ~~~c~PsrasllTG~yp~ 77 (406)
T d1ei6a_ 60 PSFTNPNNLSIVTGAPPS 77 (406)
T ss_dssp SCCHHHHHHHHHHTSCHH
T ss_pred CCccHHHHHHHHhCCCHH
Confidence 356778888888887774
No 9
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.61 E-value=5.4e+02 Score=13.28 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=4.9
Q ss_pred HHHhCCCCH
Q 033132 28 AAMSDGMSN 36 (126)
Q Consensus 28 ~~l~~g~~p 36 (126)
..++.||+|
T Consensus 61 KCl~~GM~~ 69 (75)
T d1dsza_ 61 KCFEVGMSK 69 (75)
T ss_dssp HHHHTTCCG
T ss_pred HHHHhCCCH
Confidence 345556655
No 10
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=1.55 E-value=9.4e+02 Score=14.05 Aligned_cols=28 Identities=14% Similarity=-0.044 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 033132 1 MGKVGLAPVIGMMMAECAQVGLMFAGKA 28 (126)
Q Consensus 1 m~~~~~~~~l~ll~~~~~wg~~~v~~k~ 28 (126)
+++++.+.....+..+.+-|..|+..|.
T Consensus 72 ~~~~~~~~~~~~L~~t~~lG~~Fl~~q~ 99 (185)
T d1fftc_ 72 MYKNNKSQVISWLALTWLFGAGFIGMEI 99 (185)
T ss_dssp TTTCCGGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!